Psyllid ID: psy8712
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
No hits with e-value below 0.001 by BLAST
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 651 | ||||||
| FB|FBgn0015075 | 727 | Ddx1 "Dead-box-1" [Drosophila | 0.728 | 0.651 | 0.648 | 6.3e-225 | |
| UNIPROTKB|Q92499 | 740 | DDX1 "ATP-dependent RNA helica | 0.725 | 0.637 | 0.619 | 6.1e-183 | |
| UNIPROTKB|Q5NVJ8 | 740 | DDX1 "ATP-dependent RNA helica | 0.725 | 0.637 | 0.619 | 6.1e-183 | |
| RGD|619903 | 740 | Ddx1 "DEAD (Asp-Glu-Ala-Asp) b | 0.721 | 0.635 | 0.619 | 1.3e-182 | |
| UNIPROTKB|Q4R7L5 | 740 | DDX1 "ATP-dependent RNA helica | 0.725 | 0.637 | 0.617 | 1.6e-182 | |
| UNIPROTKB|Q0IIK5 | 740 | DDX1 "ATP-dependent RNA helica | 0.721 | 0.635 | 0.616 | 4.3e-182 | |
| MGI|MGI:2144727 | 740 | Ddx1 "DEAD (Asp-Glu-Ala-Asp) b | 0.725 | 0.637 | 0.609 | 1.8e-181 | |
| UNIPROTKB|A2VD92 | 740 | ddx1 "ATP-dependent RNA helica | 0.726 | 0.639 | 0.606 | 3.8e-181 | |
| UNIPROTKB|F6V659 | 740 | DDX1 "Uncharacterized protein" | 0.725 | 0.637 | 0.609 | 4.9e-181 | |
| UNIPROTKB|F1NV49 | 740 | DDX1 "ATP-dependent RNA helica | 0.725 | 0.637 | 0.613 | 1.6e-180 |
| FB|FBgn0015075 Ddx1 "Dead-box-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1615 (573.6 bits), Expect = 6.3e-225, Sum P(2) = 6.3e-225
Identities = 310/478 (64%), Positives = 363/478 (75%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
M AFEE GVLPE+G A +E+DW LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI
Sbjct: 1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
Query: 61 IQIVCETLKEIXXXXXXXXXXXX-VISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHG 119
+QIV ETL+++ ++P W +S +DR A+A+TP+GLRCQSRE KEWHG
Sbjct: 61 LQIVWETLRDLEEGKAGKGGAIGGAVTP-WTMSFFDRGNALAVTPDGLRCQSREFKEWHG 119
Query: 120 CRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQFD 179
CRA GV G+GK+Y+EATVTDEGLCRVGWST QA KKSNN+QFD
Sbjct: 120 CRATTGVRGKGKFYFEATVTDEGLCRVGWSTQQANLDLGTCRMGFGFGGTGKKSNNRQFD 179
Query: 180 NYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSF 239
+YGEAFG DVIGCLLDL N V+FTKNGQ+LG+AF + L FYPAVVLKNAEM F
Sbjct: 180 DYGEAFGKADVIGCLLDLKNQEVSFTKNGQNLGVAFRLPDNLAKETFYPAVVLKNAEMQF 239
Query: 240 NFGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAG-P-VKLVNNAPQAIIIEPSRELA 297
NFG T FK+ P ++ C A ++ K + +AG P K NAPQAII+EPSRELA
Sbjct: 240 NFGKTDFKYAPGNGFVGACQAGPEHSKANPITGPAAGAPSAKPAPNAPQAIIMEPSRELA 299
Query: 298 EQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL 357
EQT+NQI KFK +++P++R LL+IGGV +++Q + L G IVVGTPGR+E++I+ G +
Sbjct: 300 EQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTHIVVGTPGRLEEMINSGLV 359
Query: 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMA 417
LTHCRFFVLDEAD LLKQGY LIDR+HKQIPKITSDG+RLQM+VCSATLH F+VKKMA
Sbjct: 360 LLTHCRFFVLDEADALLKQGYTELIDRLHKQIPKITSDGRRLQMVVCSATLHAFEVKKMA 419
Query: 418 ERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPG 475
ERLM+FPTWVDLKGEDAVPETVHHVV +DPQ D TW LR I TDGVH RDN PG
Sbjct: 420 ERLMHFPTWVDLKGEDAVPETVHHVVCLVDPQMDTTWQSLRQPIGTDGVHDRDNVHPG 477
|
|
| UNIPROTKB|Q92499 DDX1 "ATP-dependent RNA helicase DDX1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1528 (542.9 bits), Expect = 6.1e-183, Sum P(2) = 6.1e-183
Identities = 298/481 (61%), Positives = 361/481 (75%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
IQIV ETLK E V++ W ++ +DR +A AI +GL CQSRE KEW
Sbjct: 61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119
Query: 118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
HGCRA KG+ +GK+YYE + D+GLCRVGWST QA KKS+NKQ
Sbjct: 120 HGCRATKGLM-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178
Query: 178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
FDNYGE F MHD IGC LD+D V F+KNG+ LGLAF I +KN A +PA VLKNAE+
Sbjct: 179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238
Query: 238 SFNFGATPFKHEPPKD-YIAVCNAPKQN-VKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
FNFG FK PPKD ++A+ AP VK S + K + NAP+A+I+EPSRE
Sbjct: 239 KFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE 297
Query: 296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
LAEQT N I +FKK+I +PK+RELLIIGGV +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct: 298 LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG 357
Query: 356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
L+L+ RF VLDEADGLL QGY + I+RMH QIP++TSDGKRLQ+IVCSATLH FDVKK
Sbjct: 358 KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK 417
Query: 416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D W RL +SHI+TD VHA+DN RP
Sbjct: 418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP 477
Query: 475 G 475
G
Sbjct: 478 G 478
|
|
| UNIPROTKB|Q5NVJ8 DDX1 "ATP-dependent RNA helicase DDX1" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 1528 (542.9 bits), Expect = 6.1e-183, Sum P(2) = 6.1e-183
Identities = 298/481 (61%), Positives = 361/481 (75%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
IQIV ETLK E V++ W ++ +DR +A AI +GL CQSRE KEW
Sbjct: 61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119
Query: 118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
HGCRA KG+ +GK+YYE + D+GLCRVGWST QA KKS+NKQ
Sbjct: 120 HGCRATKGLM-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178
Query: 178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
FDNYGE F MHD IGC LD+D V F+KNG+ LGLAF I +KN A +PA VLKNAE+
Sbjct: 179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238
Query: 238 SFNFGATPFKHEPPKD-YIAVCNAPKQN-VKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
FNFG FK PPKD ++A+ AP VK S + K + NAP+A+I+EPSRE
Sbjct: 239 KFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE 297
Query: 296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
LAEQT N I +FKK+I +PK+RELLIIGGV +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct: 298 LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG 357
Query: 356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
L+L+ RF VLDEADGLL QGY + I+RMH QIP++TSDGKRLQ+IVCSATLH FDVKK
Sbjct: 358 KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK 417
Query: 416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D W RL +SHI+TD VHA+DN RP
Sbjct: 418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRP 477
Query: 475 G 475
G
Sbjct: 478 G 478
|
|
| RGD|619903 Ddx1 "DEAD (Asp-Glu-Ala-Asp) box helicase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1526 (542.2 bits), Expect = 1.3e-182, Sum P(2) = 1.3e-182
Identities = 299/483 (61%), Positives = 365/483 (75%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
IQIV ETLK E V++ W ++ +DR +A AI +GL CQSRE KEW
Sbjct: 61 IQIVYETLKDQQEGKKGKATIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119
Query: 118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
HGCRA +G+ RGK+YYE + D+GLCRVGWST QA KKS+NKQ
Sbjct: 120 HGCRATRGLL-RGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178
Query: 178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
FDNYGE F MHD IGC LD+D V F+KNG+ LGLAF I +KN A +PA VLKNAE+
Sbjct: 179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAEL 238
Query: 238 SFNFGATPFKHEPPKD-YIAVCNAPKQNV---KHSESADVSAGPVKLVNNAPQAIIIEPS 293
FNFG FK PPKD ++A+ AP V +H+ +A VS K + NAP+A+I+EPS
Sbjct: 239 KFNFGEEEFKF-PPKDGFVALSKAPDSYVVKSQHTGNAQVSQ--TKFLPNAPKALIVEPS 295
Query: 294 RELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS 353
RELAEQT N + +FKK+I +PK+RELLIIGGV +DQ+SVL +GVDIVVGTPGR++DL+S
Sbjct: 296 RELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVS 355
Query: 354 GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDV 413
G L+L+ RF VLDEADGLL QGY + I+RMH QIP+ITSDGKRLQ+IVCSATLH FDV
Sbjct: 356 TGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITSDGKRLQVIVCSATLHSFDV 415
Query: 414 KKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNA 472
KK++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D W RL ++HI+TD VHA+DN
Sbjct: 416 KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNT 475
Query: 473 RPG 475
RPG
Sbjct: 476 RPG 478
|
|
| UNIPROTKB|Q4R7L5 DDX1 "ATP-dependent RNA helicase DDX1" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 1524 (541.5 bits), Expect = 1.6e-182, Sum P(2) = 1.6e-182
Identities = 297/481 (61%), Positives = 361/481 (75%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
IQIV ETLK E V++ W ++ +DR +A AI +GL CQSRE KEW
Sbjct: 61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119
Query: 118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
HGCRA KG+ +GK+YYE + D+GLCRVGWST QA KKS+NKQ
Sbjct: 120 HGCRATKGLM-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178
Query: 178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
FDNYGE F MHD IGC LD+D V F+KNG+ LGLAF I +KN A +PA VLKNAE+
Sbjct: 179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238
Query: 238 SFNFGATPFKHEPPKD-YIAVCNAPKQN-VKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
FNFG FK PPKD ++A+ AP VK S + K + NAP+A+I+EPSRE
Sbjct: 239 KFNFGEEEFKF-PPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRE 297
Query: 296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
LAEQT N I +FKK+I +PK+RELLIIGGV +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct: 298 LAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTG 357
Query: 356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
L+L+ RF VLDEADGLL QGY + I+RMH QIP++TSDGKRLQ+IVCSATLH FDVKK
Sbjct: 358 KLNLSQVRFLVLDEADGLLTQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKK 417
Query: 416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D W RL ++HI+TD VHA+DN RP
Sbjct: 418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRP 477
Query: 475 G 475
G
Sbjct: 478 G 478
|
|
| UNIPROTKB|Q0IIK5 DDX1 "ATP-dependent RNA helicase DDX1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1520 (540.1 bits), Expect = 4.3e-182, Sum P(2) = 4.3e-182
Identities = 298/483 (61%), Positives = 366/483 (75%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
IQIV ETLK E V++ W ++ +DR +A AI +GL CQSRE KEW
Sbjct: 61 IQIVYETLKDQQEGKKGKATIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119
Query: 118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
HGCRA KG+ +GK+YYE + D+GLCRVGWS+ QA KKS+NKQ
Sbjct: 120 HGCRATKGLT-KGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQ 178
Query: 178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
FDNYGE F MHD IGC LD+D V F+KNG+ LGLAF I +KN A +PA VLKNAE+
Sbjct: 179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238
Query: 238 SFNFGATPFKHEPPKD-YIAVCNAPKQNV---KHSESADVSAGPVKLVNNAPQAIIIEPS 293
FNFG FK PPKD ++A+ AP+ V +H+ SA V+ K + NAP+A+I+EPS
Sbjct: 239 KFNFGEEEFKF-PPKDGFVALSKAPESFVVKSQHTGSAQVAQ--TKFLPNAPKALIVEPS 295
Query: 294 RELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS 353
RELAEQT N + +FKK+I +PK+RELLIIGGV +DQ+SVL +GVDIVVGTPGR++DL+S
Sbjct: 296 RELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVS 355
Query: 354 GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDV 413
G L+L+ RF VLDEADGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDV
Sbjct: 356 TGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDV 415
Query: 414 KKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNA 472
KK++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D W RL +SHI+TD VHA+DN
Sbjct: 416 KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDEVHAKDNT 475
Query: 473 RPG 475
RPG
Sbjct: 476 RPG 478
|
|
| MGI|MGI:2144727 Ddx1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 1.8e-181, Sum P(2) = 1.8e-181
Identities = 293/481 (60%), Positives = 360/481 (74%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
IQIV ETLK E V++ W ++ +DR +A AI +GL CQSRE KEW
Sbjct: 61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119
Query: 118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
HGCR +G+ +GK+YYE + D+GLCRVGWST QA KKS+NKQ
Sbjct: 120 HGCRGTRGLL-KGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQ 178
Query: 178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
FDNYGE F MHD IGC LD+D V F+KNG+ LGLAF I +KN A +PA VLKNAE+
Sbjct: 179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAEL 238
Query: 238 SFNFGATPFKHEPPKD-YIAVCNAPKQN-VKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
FNFG FK PPKD ++A+ AP VK + + K + NAP+A+I+EPSRE
Sbjct: 239 KFNFGEEEFKF-PPKDGFVALSKAPDNYIVKSQHTGNAQVSQTKFLPNAPKALIVEPSRE 297
Query: 296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
LAEQT N + +FKK+I +PK+RELLIIGGV +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct: 298 LAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTG 357
Query: 356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
L+L+ RF VLDEADGLL QGY + I+RMH QIP+IT DGKRLQ+IVCSATLH FDVKK
Sbjct: 358 KLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITCDGKRLQVIVCSATLHSFDVKK 417
Query: 416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D+ W RL ++HI+TD VHA+DN RP
Sbjct: 418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRP 477
Query: 475 G 475
G
Sbjct: 478 G 478
|
|
| UNIPROTKB|A2VD92 ddx1 "ATP-dependent RNA helicase DDX1" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 3.8e-181, Sum P(2) = 3.8e-181
Identities = 291/480 (60%), Positives = 361/480 (75%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVCETLKEIXXXXXXXXX--XXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWH 118
IQIV ETLK+ + W ++ +DR +A AI +GL CQSRE KEWH
Sbjct: 61 IQIVYETLKDQQEGKKGKASVKTGSTVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH 120
Query: 119 GCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQF 178
GCR+ +GV +GKYYYE + D+GLCRVGWST A KKS+NKQF
Sbjct: 121 GCRSTRGV-NKGKYYYEVSCHDQGLCRVGWSTLSASLDLGTDKFGFGFGGTGKKSHNKQF 179
Query: 179 DNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMS 238
DNYGE F MHD IGC LD+DN V F+KNG+ LGLAF I +KN AF+ + VLKNAE+
Sbjct: 180 DNYGEEFTMHDTIGCYLDIDNSIVKFSKNGKDLGLAFQIPSHMKNQAFFTSCVLKNAELK 239
Query: 239 FNFGATPFKHEPPKD-YIAVCNAPKQNV-KHSESADVSAGPVKLVNNAPQAIIIEPSREL 296
FNFG FK PPKD ++A+ AP +V K + K + NAP+A+IIEPSREL
Sbjct: 240 FNFGEEDFKF-PPKDGFVALSKAPDGHVVKSQNTGSAQVSQTKSLPNAPKALIIEPSREL 298
Query: 297 AEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH 356
AEQT N + +FKK++ +PK+RELLIIGGV K+Q+++L +GVDIVVGTPGR++DLIS G
Sbjct: 299 AEQTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLTILENGVDIVVGTPGRIDDLISTGK 358
Query: 357 LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM 416
LSL+ RF VLDEADGLL QGY + I+R++ QIP+ITSDGKRLQ+IVCSATLH FDVKK+
Sbjct: 359 LSLSQVRFLVLDEADGLLSQGYSDFINRIYGQIPQITSDGKRLQVIVCSATLHSFDVKKL 418
Query: 417 AERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARPG 475
+E++M+FPTWVDLKGED+VPETVHHVVV ++P++D+ W +L ++HI+TDGVH +DN RPG
Sbjct: 419 SEKIMHFPTWVDLKGEDSVPETVHHVVVPVNPKKDKQWEKLAKNHIRTDGVHDKDNTRPG 478
|
|
| UNIPROTKB|F6V659 DDX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1510 (536.6 bits), Expect = 4.9e-181, Sum P(2) = 4.9e-181
Identities = 293/481 (60%), Positives = 360/481 (74%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVCETLK---EIXXXXXXXXXXXXVISPTWILSVWDRDTAMAITPEGLRCQSREQKEW 117
IQIV ETLK E V++ W ++ +DR +A AI +GL CQSRE KEW
Sbjct: 61 IQIVYETLKDQQEGKKGKTTIKTGASVLNK-WQMNPYDRGSAFAIGSDGLCCQSREVKEW 119
Query: 118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQ 177
HGCRA KG+ +GK+YYE + D+GLCRVGWS+ QA KKS+NKQ
Sbjct: 120 HGCRATKGLT-KGKHYYEVSCHDQGLCRVGWSSMQASLDLGTDKFGFGFGGTGKKSHNKQ 178
Query: 178 FDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEM 237
FDNYGE F MHD IGC LD+D V F+KNG+ LGLAF I +KN A +PA VLKNAE+
Sbjct: 179 FDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAEL 238
Query: 238 SFNFGATPFKHEPPKD-YIAVCNAPKQNV-KHSESADVSAGPVKLVNNAPQAIIIEPSRE 295
FNFG FK PPKD ++A+ A V K + + K + NAP+A+I+EPSRE
Sbjct: 239 KFNFGEEEFKF-PPKDGFVALAKASDSYVVKSQHTGNAQVAQTKFLPNAPKALIVEPSRE 297
Query: 296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
LAEQT N + +FKK+I +PK+RELLIIGGV +DQ+SVL +GVDIVVGTPGR++DL+S G
Sbjct: 298 LAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTG 357
Query: 356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
L+L+ RF VLDEADGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDVKK
Sbjct: 358 KLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKK 417
Query: 416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
++E++M+FPTWVDLKGED+VP+TVHHVVV ++P+ D W RL ++HI+TD VHA+DN RP
Sbjct: 418 LSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKADRLWERLGKNHIRTDDVHAKDNTRP 477
Query: 475 G 475
G
Sbjct: 478 G 478
|
|
| UNIPROTKB|F1NV49 DDX1 "ATP-dependent RNA helicase DDX1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1510 (536.6 bits), Expect = 1.6e-180, Sum P(2) = 1.6e-180
Identities = 295/481 (61%), Positives = 360/481 (74%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
MAAF EMGV+PEI +AVEEMDWLLPTD+QAE+IPLILGGGDVLMAAETGSGKTGAF +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 61 IQIVCETLKEIXXXXXXXXXXXX--VISPTWILSVWDRDTAMAITPEGLRCQSREQKEWH 118
IQIV ETLK+ + W ++ +DR +A AI +GL CQSRE KEWH
Sbjct: 61 IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH 120
Query: 119 GCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVXXXXXXXXXXXXXXXXKKSNNKQF 178
GCRA +GV +GKYYYE + D+GLCRVGWST QA KKS+NKQF
Sbjct: 121 GCRATRGVT-KGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQF 179
Query: 179 DNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMS 238
D+YGE F MHD IGC LD+D + F+KNG+ LGLAF ++N A + A VLKNAE+
Sbjct: 180 DSYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEFPPHIRNQALFAACVLKNAELK 239
Query: 239 FNFGATPFKHEPPKD-YIAVCNAPKQNVKHSESADVSAGPVKLVN--NAPQAIIIEPSRE 295
FNFG FK PPKD YI +C AP NV S+ +A V+ N NAP+A+I+EPSRE
Sbjct: 240 FNFGEEDFKF-PPKDGYIGLCKAPDGNVVKSQHTG-NAQVVQTQNLPNAPKALIVEPSRE 297
Query: 296 LAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG 355
LAEQT N + +FKK+I +PK+RELLIIGGV +DQ+SVL GVDIVVGTPGR++DL+S G
Sbjct: 298 LAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTG 357
Query: 356 HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415
L+L+ RF VLDEADGLL QGY + I+R+H QIP+ITSDGKRLQ+IVCSATLH FDVKK
Sbjct: 358 KLNLSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKK 417
Query: 416 MAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL-RSHIQTDGVHARDNARP 474
++E++M+FPTWVDLKGED+VPETVHHVVV ++P+ D+ W RL ++HI+TD VHA+DN RP
Sbjct: 418 LSEKIMHFPTWVDLKGEDSVPETVHHVVVIVNPKTDKLWERLGKNHIRTDEVHAKDNTRP 477
Query: 475 G 475
G
Sbjct: 478 G 478
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.946 |
| 3rd Layer | 3.6.4 | 0.963 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 651 | |||
| cd12873 | 155 | cd12873, SPRY_DDX1, SPRY domain associated with DE | 1e-100 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 3e-48 | |
| cd12884 | 176 | cd12884, SPRY_hnRNP, SPRY domain in heterogeneous | 2e-44 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 1e-36 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 4e-32 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 4e-29 | |
| smart00449 | 122 | smart00449, SPRY, Domain in SPla and the RYanodine | 1e-26 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 2e-26 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 7e-26 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 1e-25 | |
| cd11709 | 118 | cd11709, SPRY, SPRY domain | 2e-25 | |
| pfam00622 | 125 | pfam00622, SPRY, SPRY domain | 2e-25 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 1e-23 | |
| cd12872 | 149 | cd12872, SPRY_Ash2, SPRY domain in Ash2 | 5e-23 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-20 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 3e-20 | |
| cd12885 | 132 | cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi | 6e-20 | |
| cd12882 | 128 | cd12882, SPRY_RNF123, SPRY domain at N-terminus of | 7e-19 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-15 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 1e-15 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 1e-14 | |
| cd12909 | 153 | cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin | 2e-14 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 3e-14 | |
| cd12878 | 133 | cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryano | 7e-14 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 1e-13 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-13 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 3e-13 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 5e-13 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 6e-13 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 7e-12 | |
| cd12883 | 121 | cd12883, SPRY_RING, SPRY domain at N-terminus of R | 7e-12 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 2e-10 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 5e-09 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 1e-08 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 1e-08 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 2e-08 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 3e-08 | |
| cd12886 | 128 | cd12886, SPRY_like, SPRY domain-like in bacteria | 6e-08 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 1e-07 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 1e-07 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-07 | |
| cd12876 | 187 | cd12876, SPRY_SOCS3, SPRY domain in the suppressor | 1e-07 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 5e-07 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 6e-07 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-06 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 1e-05 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-05 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 2e-05 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 3e-05 | |
| cd12877 | 151 | cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryano | 4e-05 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 6e-05 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 1e-04 | |
| cd12889 | 172 | cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tri | 0.001 | |
| cd12906 | 174 | cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppre | 0.001 | |
| cd12875 | 171 | cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and | 0.001 | |
| cd12881 | 160 | cd12881, SPRY_HERC1, SPRY domain in HERC1 | 0.002 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 0.003 |
| >gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1 | Back alignment and domain information |
|---|
Score = 302 bits (775), Expect = e-100
Identities = 106/155 (68%), Positives = 129/155 (83%)
Query: 91 LSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWST 150
+S +DRD A+AI+P+GL CQSRE+K W GCRA KGV G+GKYYYE TVTDEGLCRVGWST
Sbjct: 1 MSPYDRDAALAISPDGLLCQSREEKGWQGCRATKGVKGKGKYYYEVTVTDEGLCRVGWST 60
Query: 151 SQAVRDLGTDRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQH 210
A DLGTD+FGFG+GGTGKKS+ +QF++YGE FG DVIGCLLDLDN T++F+KNG+
Sbjct: 61 EDASLDLGTDKFGFGYGGTGKKSHGRQFEDYGEPFGKGDVIGCLLDLDNGTISFSKNGKD 120
Query: 211 LGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATP 245
LG+AF+I +L+N A +PAV LKNAE+ FNFG P
Sbjct: 121 LGVAFDIPPKLRNQALFPAVCLKNAEVEFNFGDEP 155
|
This SPRY domain is associated with the DEAD box gene, DDX1, an RNA-dependent ATPase involved in HIV-1 Rev function and virus replication. It is suggested that DDX1 acts as a cellular cofactor by promoting oligomerization of Rev on the Rev response element (RRE). DDX1 RNA is overexpressed in breast cancer, data showing a strong and independent association between poor prognosis and deregulation of the DEAD box protein DDX1, thus potentially serving as an effective prognostic biomarker for early recurrence in primary breast cancer. DDX1 also interacts with RelA and enhances nuclear factor kappaB-mediated transcription. DEAD-box proteins are associated with all levels of RNA metabolism and function, and have been implicated in translation initiation, transcription, RNA splicing, ribosome assembly, RNA transport, and RNA decay. Length = 155 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 3e-48
Identities = 84/292 (28%), Positives = 132/292 (45%), Gaps = 66/292 (22%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
A+I+ P+RELA Q ++ K K + +R ++ GGV+++ Q+ L GVDIV
Sbjct: 97 RKYVSALILAPTRELAVQIAEELRKLGKNL--GGLRVAVVYGGVSIRKQIEALKRGVDIV 154
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
V TPGR+ DLI G L L+ VLDEAD +L G+ + I+++ K +P Q
Sbjct: 155 VATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP------PDRQT 208
Query: 402 IVCSATLHDFDVKKMAERLM--YFPTWVDLKGEDAVPETVHHVVVKIDPQ---------- 449
++ SAT D++++A R + V ++ + + + ++++ +
Sbjct: 209 LLFSAT-MPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKL 267
Query: 450 -QDETWG-------------RLRSHIQTDGVHA-----------RDN------------- 471
+DE G L ++ G RD
Sbjct: 268 LKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVL 327
Query: 472 ------ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
AR G+DI + +IN LP D +YVHRIGR GRA R G+AIS V+
Sbjct: 328 VATDVAAR-GLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVT 378
|
Length = 513 |
| >gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1 | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 2e-44
Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 16/144 (11%)
Query: 117 WHGCRANKGVYGRGKYYYEATVTDE-------------GLCRVGWSTSQAVRDLGTDRFG 163
W G RA GV GK +E V + + RVGWS + LG ++
Sbjct: 33 WAGARATYGVRK-GKVCFEVKVLENLPVKHLPTEETDPHVVRVGWSVDSSSLQLGEEKLS 91
Query: 164 FGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDN--MTVAFTKNGQHLGLAFNISQQL 221
+G+G TGKKS N +F++YGE FG DVIGC LDL++ + ++FTKNG+ LG+AF I ++L
Sbjct: 92 YGYGSTGKKSTNGKFEDYGEPFGEGDVIGCYLDLESEPVEISFTKNGKDLGVAFRIDKEL 151
Query: 222 KNSAFYPAVVLKNAEMSFNFGATP 245
+ A +P ++ KN + NFG
Sbjct: 152 EGKALFPHILTKNCAVEVNFGQKE 175
|
This domain, consisting of the distinct N-terminal PRY subdomain followed by the SPRY subdomain, is found at the C-terminus of heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1 (also known as HNRPUL1 ) which is a major constituent of nuclear matrix or scaffold and binds directly to DNA sequences through the N-terminal acidic region named serum amyloid P (SAP). Its function is specifically modulated by E1B-55kDa in adenovirus-infected cells. HNRPUL1 also participates in ATR protein kinase signaling pathways during adenovirus infection. Two transcript variants encoding different isoforms have been found for this gene. When associated with bromodomain-containing protein 7 (BRD7), it activates transcription of glucocorticoid-responsive promoter in the absence of ligand-stimulation. Length = 176 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-36
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
+ PQA+I+ P+RELA Q K K ++ ++I GG ++ Q+ L G IVV
Sbjct: 68 DGPQALILAPTRELALQIAEVARKLGKH---TNLKVVVIYGGTSIDKQIRKLKRGPHIVV 124
Query: 343 GTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
TPGR+ DL+ G L L+ ++ VLDEAD +L G+ + I + K +PK Q +
Sbjct: 125 ATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDR------QTL 178
Query: 403 VCSATLHDFDVKKMAERLM 421
+ SAT+ +V+ +A + +
Sbjct: 179 LFSATMPK-EVRDLARKFL 196
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-32
Identities = 90/297 (30%), Positives = 134/297 (45%), Gaps = 70/297 (23%)
Query: 280 LVNNAPQ--------AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM 331
L+ P A+I+ P+RELA Q + + K++ IR L++ GGV++ QM
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL---NIRSLVVFGGVSINPQM 119
Query: 332 SVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391
L GVD++V TPGR+ DL + L VLDEAD +L G+ + I R+ ++P
Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLP- 178
Query: 392 ITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ- 450
KR Q ++ SAT D D+K +AE+L++ P +++ + E V V +D ++
Sbjct: 179 ----AKR-QNLLFSATFSD-DIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRK 232
Query: 451 ---------DETW-------------GRLRSHIQTDGV-----H---------------- 467
W L + DG+ H
Sbjct: 233 RELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFK 292
Query: 468 --------ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516
A D A G+DI LP ++N LP+ +YVHRIGR GRA G A+SLV
Sbjct: 293 SGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349
|
Length = 456 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-29
Identities = 86/287 (29%), Positives = 127/287 (44%), Gaps = 64/287 (22%)
Query: 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
QA+++ P+RELA+Q +I + +FI P I+ L + GGV + Q+ L G I+VG
Sbjct: 72 RVQALVLCPTRELADQVAKEIRRLARFI--PNIKVLTLCGGVPMGPQIDSLEHGAHIIVG 129
Query: 344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
TPGR+ D + G L L VLDEAD +L G+ + ID + +Q P +R Q ++
Sbjct: 130 TPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA-----RR-QTLL 183
Query: 404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ-DETWGRLRSH-- 460
SAT + + +++R P V ++ +P + ++ P + RL H
Sbjct: 184 FSATYPE-GIAAISQRFQRDPVEVKVESTHDLP-AIEQRFYEVSPDERLPALQRLLLHHQ 241
Query: 461 --------------------IQTDGVHA-----------RD-------N----------- 471
+ G A RD N
Sbjct: 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDV 301
Query: 472 -ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
AR G+DI L +IN L D +VHRIGR GRA GLA+SLV+
Sbjct: 302 AAR-GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVA 347
|
Length = 460 |
| >gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-26
Identities = 48/123 (39%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 129 RGKYYYEATVTDEGLCRVGWSTSQAVRD----LGTDRFGFGFGGT-GKKSNNKQFDNYGE 183
G++Y+E + D G RVG +T R LG D+ +G+ G GKK +N YG
Sbjct: 1 SGRHYFEVEIGDGGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGL 60
Query: 184 AFGMH-DVIGCLLDLDNMTVAFTKNGQHL-GLAFNISQQLKNS-AFYPAVVLKNAE-MSF 239
DVIGC LDL+ T++F KNG++L GLAF +K S YPA L + +
Sbjct: 61 PLQEPGDVIGCFLDLEAGTISFYKNGKYLHGLAF---FDVKFSGPLYPAFSLGSGNSVRL 117
Query: 240 NFG 242
NFG
Sbjct: 118 NFG 120
|
Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. Length = 122 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 86/306 (28%), Positives = 142/306 (46%), Gaps = 68/306 (22%)
Query: 269 ESADVSAGPVKLVN---NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGV 325
++A ++L++ NA QA+I+ P+RELA+Q ++ ++ K+R +GG
Sbjct: 78 KTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYL---KVRCHACVGGT 134
Query: 326 NVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRM 385
V+D ++ L +GV +VVGTPGR+ D+I HL + + F+LDEAD +L +G+ I +
Sbjct: 135 VVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDV 194
Query: 386 HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVV- 444
K++P +Q+ + SAT+ + ++ ++ + M P + +K ++ E + V
Sbjct: 195 FKKLPP------DVQVALFSATMPN-EILELTTKFMRDPKRILVKKDELTLEGIRQFYVA 247
Query: 445 ------KIDPQQD--ETWG----------RLRSHIQTDGVHARDN--------------- 471
K D D ET R + T +H RD
Sbjct: 248 VEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRD 307
Query: 472 --------------------ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGL 511
AR GID+ + +IN LP NY+HRIGR GR R G+
Sbjct: 308 LIMREFRSGSTRVLITTDLLAR-GIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGV 366
Query: 512 AISLVS 517
AI+ V+
Sbjct: 367 AINFVT 372
|
Length = 401 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-26
Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 11/129 (8%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG-VDI 340
PQA+++ P+RELAEQ + + KK +R L+ GG ++K+Q L G DI
Sbjct: 43 KGGPQALVLAPTRELAEQIYEE---LKKLFKILGLRVALLTGGTSLKEQARKLKKGKADI 99
Query: 341 VVGTPGRMEDLISGGHLSLTH-CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRL 399
+VGTPGR+ DL+ G L L + VLDEA LL G+G+ ++ + ++P
Sbjct: 100 LVGTPGRLLDLLRRGKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP------PDR 153
Query: 400 QMIVCSATL 408
Q+++ SATL
Sbjct: 154 QILLLSATL 162
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-25
Identities = 80/286 (27%), Positives = 124/286 (43%), Gaps = 61/286 (21%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG-VDIVVG 343
P+A+II P+REL Q K+ + + +GG++ Q+ L + DI+V
Sbjct: 163 PRALIIAPTRELVVQIAKDAAALTKY---TGLNVMTFVGGMDFDKQLKQLEARFCDILVA 219
Query: 344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
TPGR+ D G + L VLDEAD +L G+ + ++ +Q P+ +R Q ++
Sbjct: 220 TPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPR---KEER-QTLL 275
Query: 404 CSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH---HVVVKIDPQQ-------DET 453
SAT D DV +A++ P V+++ E+ +TV + V D +
Sbjct: 276 FSATFTD-DVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNP 334
Query: 454 WG-------------RLRSHIQTDGVH-----------------------------ARDN 471
W R+ + DG++ A D
Sbjct: 335 WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDV 394
Query: 472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
A GI I G+ +IN TLP+D +YVHRIGR GRA G++IS
Sbjct: 395 AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAG 440
|
Length = 475 |
| >gnl|CDD|240451 cd11709, SPRY, SPRY domain | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-25
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 130 GKYYYEATV--TDEGLCRVGWSTSQAVRD----LGTDRFGFGFGGTGKKSNNKQ-FDNYG 182
GK+YYE V + GL +VGW+T D +G D +GF G+ + + + G
Sbjct: 1 GKWYYEVRVDSGNGGLIQVGWATKSFSLDGERGVGDDEGSWGFDGSRLRKGHGGSSEPGG 60
Query: 183 EAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVL-KNAEMSFN 240
+ DV+GCLLDLD T++F+ NG LG+AF K YPAV L ++ N
Sbjct: 61 RPWKSGDVVGCLLDLDAGTLSFSLNGVDLGVAFENL-FRKGGPLYPAVSLGSGQGVTIN 118
|
SPRY domains, first identified in the SP1A kinase of Dictyostelium and rabbit Ryanodine receptor (hence the name), are homologous to B30.2. SPRY domains have been identified in at least 11 protein families, covering a wide range of functions, including regulation of cytokine signaling (SOCS), RNA metabolism (DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha), intracellular calcium release (ryanodine receptors or RyR) and regulatory and developmental processes (HERC1 and Ash2L). B30.2 also contains residues in the N-terminus that form a distinct PRY domain structure; i.e. B30.2 domain consists of PRY and SPRY subdomains. B30.2 domains comprise the C-terminus of three protein families: BTNs (receptor glycoproteins of immunoglobulin superfamily); several TRIM proteins (composed of RING/B-box/coiled-coil or RBCC core); Stonutoxin (secreted poisonous protein of the stonefish Synanceia horrida). While SPRY domains are evolutionarily ancient, B30.2 domains are a more recent adaptation where the SPRY/PRY combination is a possible component of immune defense. Mutations found in the SPRY-containing proteins have shown to cause Mediterranean fever and Opitz syndrome. Length = 118 |
| >gnl|CDD|216029 pfam00622, SPRY, SPRY domain | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-25
Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 129 RGKYYYEATVTD--EGLCRVGWSTSQAVRD----LGTDRFGFGFGGT-GKKSNNKQFDNY 181
GK+Y+E V G RVGW+T + LG D +G+ G+ G K +N + + Y
Sbjct: 1 SGKHYFEVEVDTGGGGHVRVGWATKSVKKPGFRLLGDDEGSWGYDGSGGSKYHNGESEPY 60
Query: 182 GEAFGMHDVIGCLLDLDNMTVAFTKNGQHL-GLAFNISQQLKNSAFYPAVVLK--NAEMS 238
G F DVIGC LDL+ ++FTKNG+ L G F YPAV L +
Sbjct: 61 GLKFQEGDVIGCFLDLEEGEISFTKNGKDLGGYTF--RNVEFGGPLYPAVSLGSTGEAVQ 118
Query: 239 FNFGATP 245
FNFG
Sbjct: 119 FNFGQLK 125
|
SPRY Domain is named from SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. Length = 125 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 1e-23
Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 13/162 (8%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGV-DI 340
+ +++ P+RELAEQ + KK ++ + + GG + ++Q+ L SG DI
Sbjct: 52 GKGGRVLVLVPTRELAEQWAEE---LKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDI 108
Query: 341 VVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400
+V TPGR+ DL+ LSL++ +LDEA LL G+G+ ++++ K +P K +Q
Sbjct: 109 LVTTPGRLLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP------KNVQ 162
Query: 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHV 442
+++ SAT + +++ + E + P V + E +
Sbjct: 163 LLLLSATPPE-EIENLLELFLNDP--VFIDVGFTPLEPIEQF 201
|
Length = 201 |
| >gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2 | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 5e-23
Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 16/145 (11%)
Query: 108 RCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGL----CRVGWSTSQAVRD--LGTDR 161
R +K + RAN GV GK+Y+E + + G RVGWS +A +G D+
Sbjct: 7 RLTVTGEKGYRMARANHGVR-EGKWYFEVKILEGGGETGHVRVGWSRREASLQAPVGYDK 65
Query: 162 FGFGFGG-TGKKSNNKQFDNYGE-AFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAF-NIS 218
+ + + G+K + + YGE F DVIGCL+ L + F KNG+ G+AF +I
Sbjct: 66 YSYAYRDKDGEKFHLSRGKPYGEPGFKEGDVIGCLITLP--KIEFFKNGKSQGVAFEDIY 123
Query: 219 QQLKNSAFYPAVVL-KNAEMSFNFG 242
+YPAV L A + NFG
Sbjct: 124 GTG---GYYPAVSLYMGATVRLNFG 145
|
This SPRY domain is found at the C-terminus of Ash2 (absent, small, or homeotic discs 2) -like proteins, core components of all mixed-lineage leukemia (MLL) family histone methyltransferases. Ash2 is a member of the trithorax group of transcriptional regulators of the Hox genes. Recent studies show that the SPRY domain of Ash2 mediates the interaction with RbBP5 and has an important role in regulating the methyltransferase activity of MLL complexes. In yeast, Ash2 is involved in histone methylation and is required for the earliest stages of embryogenesis. Length = 149 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-20
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
Q +++ P+RELA Q ++ K + I+ +IGG ++K Q +LS DIV
Sbjct: 28 LKGGQVLVLAPTRELANQVAERL----KELFGEGIKVGYLIGGTSIKQQEKLLSGKTDIV 83
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
VGTPGR+ D + LSL +LDEA LL QG+G L ++ ++PK Q+
Sbjct: 84 VGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD------RQV 137
Query: 402 IVCSATL 408
++ SAT
Sbjct: 138 LLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 3e-20
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
FEE+G+ PE+ + + + + PT +QA AIP +L G DV+ A+TGSGKT AF +PI++
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILE- 59
Query: 64 VCETLKEIQAGKGQGKAKAQVISPT 88
++ + +A +++PT
Sbjct: 60 ------KLDPSPKKDGPQALILAPT 78
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3 | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 6e-20
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 121 RANKGV-YGRGKYYYEATVTD---EGLCRVGWSTS--QAVRDLGTDRFGFGF-GGTGKK- 172
RA+ + +Y+E T+ D +G+ +G+ TS R G + +G+ G G+
Sbjct: 4 RADHPIPPKVPVFYFEVTILDLGEKGIVSIGFCTSGFPLNRMPGWEDGSYGYHGDDGRVY 63
Query: 173 SNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVL 232
+ +NYG FG DV+GC ++ + FTKNG+ LG AF + + YP V L
Sbjct: 64 LGGGEGENYGPPFGTGDVVGCGINFKTGEIFFTKNGELLGTAF---ENVVKGRLYPTVGL 120
Query: 233 --KNAEMSFNFG 242
++ NFG
Sbjct: 121 GSPGVKVRVNFG 132
|
This family includes SPRY domains found in Ran binding proteins (RBP or RanBPM) 9 and 10, SSH4 (suppressor of SHR3 null mutation protein 4), SPRY domain-containing protein 3 (SPRYD3) as well as HECT, a C-terminal catalytic domain of a subclass of ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as androgen receptor (AR) coactivators. Both consist of the N-terminal proline- and glutamine-rich regions, the SPRY domain, and LisH-CTLH and CRA motifs. The SPRY domain in SSH4 may be involved in cargo recognition, either directly or by combination with other adaptors, possibly leading to a higher selectivity. SPRYD3 is highly expressed in most tissues in humans, possibly involved in important cellular processes. HECT E3 mediates the direct transfer of ubiquitin from E2 to substrate. Length = 132 |
| >gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger protein 123 | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 7e-19
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 6/127 (4%)
Query: 121 RANKGVYGRGKYYYEATVTDEGLCRVGWSTSQ----AVRDLGTDRFGFGFGGTGKKSNNK 176
RAN VY GK+ YE T+ +G+ ++GW+T +G + + G + N
Sbjct: 3 RANACVYK-GKWMYEVTLGTKGIMQIGWATISCRFTQEEGVGDTPDSYAYDGNRVRKWNV 61
Query: 177 QFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAE 236
YGE + DVIGC +DLD T++F +NG+ LG+AF+ ++ A++PAV L E
Sbjct: 62 STQKYGEPWVAGDVIGCCIDLDEGTISFYRNGRSLGVAFDNVRRGPGLAYFPAVSLSFGE 121
Query: 237 M-SFNFG 242
NFG
Sbjct: 122 SVELNFG 128
|
This SPRY domain is found at the N-terminus of RING finger protein 123 domain (also known as E3 ubiquitin-protein ligase RNF123). The ring finger domain motif is present in a variety of functionally distinct proteins and known to be involved in protein-protein and protein-DNA interactions. RNF123 displays E3 ubiquitin ligase activity toward the cyclin-dependent kinase inhibitor p27 (Kip1). Length = 128 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-15
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
F +G+ PE+ +A++++ + PT +Q AIPLIL G DVL A+TG+GKT AF LP+
Sbjct: 28 PPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPL 87
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPT 88
+Q +I + A +++PT
Sbjct: 88 LQ-------KILKSVERKYVSALILAPT 108
|
Length = 513 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVG 343
P+ +I+ P+RELA Q +Q + K T I I GGV + V S DIVV
Sbjct: 73 PPRILILTPTRELAMQVADQARELAKH-THLDI--ATITGGVAYMNHAEVFSENQDIVVA 129
Query: 344 TPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
TPGR+ I + +LDEAD +L G+ I+ + + R Q ++
Sbjct: 130 TPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETR------WRKQTLL 183
Query: 404 CSATLHDFDVKKMAERLMYFPTWVD 428
SATL V+ AERL+ P V+
Sbjct: 184 FSATLEGDAVQDFAERLLNDPVEVE 208
|
Length = 434 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Query: 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
N P+A+I+ P+RELA Q + ++ L GG Q+ VL SGVDI++
Sbjct: 82 NQPRALIMAPTRELAVQIHADA---EPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILI 138
Query: 343 GTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402
GT GR+ D H++L + VLDEAD + G+ I + +++P RL M+
Sbjct: 139 GTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQ---RLNML 195
Query: 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGE 432
SATL + V+++A M P +V+++ E
Sbjct: 196 F-SATL-SYRVRELAFEHMNNPEYVEVEPE 223
|
Length = 423 |
| >gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10 | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 41/132 (31%), Positives = 56/132 (42%), Gaps = 32/132 (24%)
Query: 130 GKYYYEATVTD---EGLCRVGWSTSQAVRDL--------------GTDRFGFGFGGTGKK 172
G YY+E + +G +G ST +L G D F GTGK
Sbjct: 34 GIYYFEVKILSKGRDGYIGIGLSTKGV--NLNRLPGWEKHSWGYHGDDGHSFSSSGTGKP 91
Query: 173 SNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVL 232
YG F DVIGC ++ + T+ +TKNG +LG AF + L + YP V L
Sbjct: 92 --------YGPTFTTGDVIGCGINFVDNTIFYTKNGVNLGTAF---RDLPDKNLYPTVGL 140
Query: 233 K--NAEMSFNFG 242
+ + NFG
Sbjct: 141 RTPGEHVEANFG 152
|
This family includes SPRY domain in Ran binding protein (RBP or RanBPM) 9 and 10, and similar proteins. RanBP9 (also known as RanBPM), a binding partner of Ran, is a small Ras-like GTPase that exerts multiple functions via interactions with various proteins. RanBP9 and RanBP10 also act as androgen receptor (AR) coactivators. Both consist of the N-terminal proline- and glutamine-rich regions, the SPRY domain, and LisH-CTLH and CRA motifs. SPRY domain of RanBPM forms a complex with CD39, a prototypic member of the NTPDase family, thus down-regulating activity substantially. RanBP10 enhances the transcriptional activity of AR in a ligand-dependent manner and exhibits a protein expression pattern different from RanBPM in various cell lines. RanBP10 is highly expressed in AR-positive prostate cancer LNCaP cells, while RanBPM is abundant in WI-38 and MCF-7 cells. Length = 153 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-14
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
P+A+I+ P+RELA Q +KF D +R L+ GGV+ Q +L GVD+++ T
Sbjct: 85 PRALILAPTRELAIQIHKDAVKFG---ADLGLRFALVYGGVDYDKQRELLQQGVDVIIAT 141
Query: 345 PGRMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
PGR+ D + +SL C VLDEAD + G+ I + +++P+ + Q ++
Sbjct: 142 PGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTR----QTLL 197
Query: 404 CSATL 408
SATL
Sbjct: 198 FSATL 202
|
Length = 572 |
| >gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor (RyR) | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 7e-14
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 129 RGKYYYEATVTDEGLCRVGWS--TSQAVRDLGTDRFGFGFGG-TGKKSNNKQFDNYGEAF 185
GK+Y+E V G RVGW+ + +LG+D + F G +K + +++G+ +
Sbjct: 13 SGKWYFEFEVLTSGYMRVGWARPGFRPDLELGSDDLSYAFDGFLARKWHQGS-ESFGKQW 71
Query: 186 GMHDVIGCLLDLDNMTVAFTKNGQHL 211
DV+GC+LDL + T++FT NG+ L
Sbjct: 72 QPGDVVGCMLDLVDRTISFTLNGELL 97
|
This SPRY domain (SPRY2) is the second of three structural repeats in all three isoforms of the ryanodine receptor (RyR), which are the major Ca2+ release channels in the membranes of sarcoplasmic reticulum (SR). There are three RyR genes in mammals; the skeletal RyR1, the cardiac RyR2 and the brain RyR3. The three SPRY domains are located in the N-terminal part of the cytoplasmic region of the RyRs, The SPRY2 domain has been shown to bind to the dihydropryidine receptor (DHPR) II-III loop and the ASI region of RyR1. Length = 133 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 31/86 (36%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
+F+ +G+ P+I +AV E + PT +Q +AIP +L G D++ +A+TG+GKT F LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 63 IVCETLKEIQAGKGQGKAKAQVISPT 88
+ + KG+ +A +++PT
Sbjct: 62 HL---ITRQPHAKGRRPVRALILTPT 84
|
Length = 456 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 270 SADVSAGPVKLVNN------APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIG 323
S +A + L++N APQ +++ P+RELA Q + F K + + + + G
Sbjct: 54 SGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHM--RGVNVVALYG 111
Query: 324 GVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLID 383
G Q+ L G IVVGTPGR+ D + G L L+ VLDEAD +L+ G+ ++
Sbjct: 112 GQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVE 171
Query: 384 RMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427
+ QIP + Q + SAT+ + ++++ R M P V
Sbjct: 172 TIMAQIP------EGHQTALFSATMPE-AIRRITRRFMKEPQEV 208
|
Length = 629 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 11/169 (6%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
P A+++ P+REL Q +Q K + + L++GG + Q+ + GV+++
Sbjct: 194 QRNPLAMVLTPTRELCVQVEDQAKVLGKGL---PFKTALVVGGDAMPQQLYRIQQGVELI 250
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
VGTPGR+ DL+S + L + VLDE D +L++G+ Q+ +I + Q+
Sbjct: 251 VGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGF-------RDQVMQIFQALSQPQV 303
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ 450
++ SAT+ +V+K A L + + + + V + + ++ +Q
Sbjct: 304 LLFSATVSP-EVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ 351
|
Length = 518 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-13
Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 26 TDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVI 85
T +QA+AIP IL G DVL+ A TGSGKT AF LPI+Q + Q A V+
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQALLPKKGGPQ---------ALVL 51
Query: 86 SPT 88
+PT
Sbjct: 52 APT 54
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-13
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 273 VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332
++A P+ + P +++ P+RELAEQ Q KF KIR + GGV + Q+
Sbjct: 192 INAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG---ASSKIRNTVAYGGVPKRGQIY 248
Query: 333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQI 389
L GV+I++ PGR+ D + +L + VLDEAD +L G+ I ++ QI
Sbjct: 249 ALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQI 305
|
Length = 545 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 7e-12
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
F E+ + + +A+++ + PT +QAEAIP L G DVL +A TG+GKT AF LP +Q
Sbjct: 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQ 61
|
Length = 434 |
| >gnl|CDD|240463 cd12883, SPRY_RING, SPRY domain at N-terminus of Really Interesting New Gene (RING) finger domain | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 7e-12
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 22/128 (17%)
Query: 130 GKYYYEATVTDEGLCRVGWSTSQAV------RDLGTDRFGFGFGGTGKKSNNKQFDNYGE 183
G +YYE TV G+ ++GW+T + +G D + F + G +Q Y
Sbjct: 1 GVWYYEVTVLTSGVMQIGWATKDSKFLNHEGYGIGDDEYSFAYDGC------RQLIWYNA 54
Query: 184 AFGMH--------DVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNA 235
H DV+GCLLDLD + F+ NG L S F+ A +
Sbjct: 55 ESRPHTHPRWKPGDVVGCLLDLDKKQMIFSLNGNRLPPERLPFTSAS-SGFFAAASFMSF 113
Query: 236 EM-SFNFG 242
+ FNFG
Sbjct: 114 QQCEFNFG 121
|
This SPRY domain is found at the N-terminus of RING finger domains which are present in a variety of functionally distinct proteins and known to be involved in protein-protein and protein-DNA interactions. RING-finger domain is a type of Zn-finger that binds two Zn atoms and is identified in proteins with a wide range of functions such as viral replication, signal transduction, and development. Length = 121 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
F ++G+ I +A+ ++ + P+ +QAE IP +L G DVL A+TGSGKT AF LP++
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLH 66
Query: 63 IVCETLKEIQAGKGQGKAKAQVISPTWILSV 93
+ LK Q V++PT L+V
Sbjct: 67 NLDPELKAPQ---------ILVLAPTRELAV 88
|
Length = 629 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F G+ P++ +E + PT +Q +AIP L G +L++A+TGSGKT +F +PII
Sbjct: 123 FSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISR 182
Query: 64 VCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99
C Q A V++PT L V D A
Sbjct: 183 CCTI--RSGHPSEQRNPLAMVLTPTRELCVQVEDQA 216
|
Length = 518 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-08
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
M AF + + P + + E+ + T +QA+++P IL G DV+ A+TGSGKT AF L +
Sbjct: 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGL 62
Query: 61 IQ 62
+Q
Sbjct: 63 LQ 64
|
Length = 460 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-08
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 17 VEEMDWLLPTDVQAEAIPLIL-GGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGK 75
+E+ + Q EAI +L G DV++AA TGSGKT A LP ++A K
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPA----------LEALK 50
Query: 76 GQGKAKAQVISPT 88
+ V+ PT
Sbjct: 51 RGKGGRVLVLVPT 63
|
Length = 201 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL 515
GID+ + +IN LP ++Y+ RIGR GRA + G AI L
Sbjct: 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 30/62 (48%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
GR+ + TD V AR GIDI + +IN +P Y+HRIGR GRA R G AIS
Sbjct: 294 GRVNVLVATD-VAAR-----GIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347
Query: 515 LV 516
LV
Sbjct: 348 LV 349
|
Length = 434 |
| >gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-08
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 130 GKYYYEATVTDEGL---CRVGWSTSQAVRDLGTDRFGFGFG-GTGKKSNNKQFDN----- 180
GK+Y+E TV +G + + + G +G G S N
Sbjct: 1 GKWYWEVTVVSSTSSSAAGIGVAPAAVTLNNGLGIELSSYGYSLGVSSGNTYSGGSTVAS 60
Query: 181 YGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLG---LAFNISQQLKNSAFYPAVVLKNA-- 235
+G F DVIG LDLD + F KNG G A + + YPAV ++
Sbjct: 61 FGAGFTAGDVIGVALDLDAGKIWFYKNGVWQGSGSPAPGTNPAFAGTQVYPAVTGGSSTG 120
Query: 236 -EMSFNFG 242
+ NFG
Sbjct: 121 GSFTANFG 128
|
This family contains SPRY-like domains that are found only in bacterial and are mostly uncharacterized. SPRY domains, first identified in the SP1A kinase of Dictyostelium and rabbit Ryanodine receptor (hence the name), are homologous to B30.2. SPRY domains have been identified in at least 11 eukaryotic protein families, covering a wide range of functions, including regulation of cytokine signaling (SOCS), RNA metabolism (DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha), intracellular calcium release (ryanodine receptors or RyR) and regulatory and developmental processes (HERC1 and Ash2L). Length = 128 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 24/48 (50%), Positives = 29/48 (60%)
Query: 468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL 515
A D A G+ I + + N LPDD +YVHRIGR GRA G +ISL
Sbjct: 311 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358
|
Length = 423 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 1e-07
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRA 506
GID+ + +IN LP + A+Y+ RIGR GRA
Sbjct: 46 GIDLPDVNLVINYDLPWNPASYIQRIGRAGRA 77
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQV 84
T Q AIP I G +VL+ A TGSGKT A LP+I L + GK + A
Sbjct: 23 LTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVIN----ELLSLGKGKLEDGIYALY 78
Query: 85 ISP 87
ISP
Sbjct: 79 ISP 81
|
Length = 814 |
| >gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine signaling 3 (SOCS3) family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 157 LGTDRFGFGFGGTGKKSNNKQFDNYGEAFG-MHDVIGCLLDLDNMTVAFTKNGQHLGLAF 215
LG D +G G +N + Y E FG +IG LD+ + T+ F KNG+ LG+AF
Sbjct: 84 LGLDEESWGLSYKGLLWHNGESRPYTEKFGNQGTIIGVHLDMWSGTLTFYKNGKPLGVAF 143
Query: 216 -NISQQLKNSAFYPAV 230
+ Q YP V
Sbjct: 144 TGL--QNDGKKLYPMV 157
|
The SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. All four SPSB proteins interact with c-Met, the hepatocyte growth factor receptor, but SOCS3 regulates cellular response to a variety of cytokines such as leukemia inhibitory factor (LIF) and interleukin 6. SOCS3, along with SOCS1, are expressed by immune cells and cells of the central nervous system (CNS) and have the potential to impact immune processes within the CNS. In non-small cell lung cancer (NSCLC), SOCS3 is silenced and proline-rich tyrosine kinase 2 (Pyk2) is over-expressed; it has been suggested that SOCS3 could be an effective way to prevent the progression of NSCLC due to its role in regulating Pyk2 expression. Length = 187 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
GRL I TD V AR G+D+ + ++N +P D +YVHRIGR GRA R G A+
Sbjct: 294 GRLDILIATD-VAAR-----GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347
Query: 515 LV 516
V
Sbjct: 348 FV 349
|
Length = 629 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 6e-07
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F + + PE+ A+ ++ + T +QA+ + L G D + A+TG+GKT AF + II
Sbjct: 89 FHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQ 148
Query: 64 VCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAMAIT 103
+ +T + G+ +A +I+PT L V A A+T
Sbjct: 149 LLQT--PPPKERYMGEPRALIIAPTRELVVQIAKDAAALT 186
|
Length = 475 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRA 506
G+D+ G+ +I LP A+Y+ RIGR GRA
Sbjct: 50 GLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81
|
Length = 82 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
FE I K+++ + PT +Q + P+ L G D++ AETGSGKT AF LP I
Sbjct: 132 FEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAI 189
|
Length = 545 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 25/95 (26%)
Query: 41 DVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAM 100
DVL+AA TGSGKT A LPI ++ + V++PT L+
Sbjct: 2 DVLLAAPTGSGKTLAALLPI----------LELLDSLKGGQVLVLAPTRELANQ------ 45
Query: 101 AITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYE 135
+ KE G G G +
Sbjct: 46 ---------VAERLKELFGEGIKVGYLIGGTSIKQ 71
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 29 QAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPT 88
Q +A+ LI G +V++ TGSGKT +F LPI+ L+ A+A ++ PT
Sbjct: 75 QVDALRLIREGRNVVVTTGTGSGKTESFLLPILD---HLLR-------DPSARALLLYPT 124
|
Length = 851 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 16/84 (19%)
Query: 447 DPQQDE-TW-------GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVH 498
D +Q+E TW G+ I TD V +R G+D+ + ++IN P+ +YVH
Sbjct: 410 DKKQEERTWVLNEFKTGKSPIMIATD-VASR-----GLDVKDVKYVINFDFPNQIEDYVH 463
Query: 499 RIGRVGRAERMGLAISLVSTVPEK 522
RIGR GRA G + + ++ P+K
Sbjct: 464 RIGRTGRAGAKGASYTFLT--PDK 485
|
Length = 545 |
| >gnl|CDD|240457 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryanodine receptor (RyR) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 26/114 (22%)
Query: 119 GCRANKGVYGRGKYYYEATVT--DEGLC-----RVGWSTSQAVRD------------LGT 159
G Y K+Y+E V ++ RVGW+ + +G
Sbjct: 9 GVVEGSAQYK--KWYFEVEVDHVEQFTHQPAHLRVGWANTSGYVPYPGGGEGWGGNGVGD 66
Query: 160 DRFGFGFGG----TGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQ 209
D + +GF G TG +S DV+GC LDL +++F NG+
Sbjct: 67 DLYSYGFDGLHLWTGGRSRRVTSGTQ-HLLKKGDVVGCCLDLSVPSISFRVNGR 119
|
This SPRY domain is the first of three structural repeats in all three isoforms of the ryanodine receptor (RyR), which are the major Ca2+ release channels in the membranes of sarcoplasmic reticulum (SR). There are three RyR genes in mammals; the skeletal RyR1, the cardiac RyR2 and the brain RyR3. The three SPRY domains are located in the N-terminal part of the cytoplasmic region of the RyRs, but no specific function has been found for this first SPRY domain of the RyRs. Length = 151 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56
F + + P++ +A+E+ + T +QA A+PL L G DV A+TG+GKT AF
Sbjct: 10 FSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAF 62
|
Length = 423 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL 515
A D A G+ I G+ ++ N LP D +YVHRIGR R G AIS
Sbjct: 313 ATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 360
|
Length = 572 |
| >gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite motif-containing proteins, TRIM9 and TRIM67 | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 129 RGKYYYEATV---TDEGLCRVGWSTSQAVRD--LGTDRFGFGFGGTGKKS----NNKQFD 179
RG +Y+E T+ G + + +D LG D G+ +S NN+ +
Sbjct: 48 RGVHYWEVTIDRYDGHPDPAFGVARADVAKDKMLGKDDKGWAMYIDSNRSWFLHNNEHSN 107
Query: 180 NYGEAFGMHDVIGCLLDLDNMTVAFTKNG-QHLGLAF-NISQQLKNSAFYPAVVLKN 234
+ VIG LLDLD T++F N +AF N+ FYPA L
Sbjct: 108 RTEGGITVGSVIGVLLDLDRGTLSFYVNDEPQGPVAFTNLPG-----LFYPAFSLNR 159
|
This domain, consisting of the distinct N-terminal PRY subdomain followed by the SPRY subdomain, is found at the C-terminus of TRIM9 proteins. TRIM9 protein is expressed mainly in the cerebral cortex, and functions as an E3 ubiquitin ligase. It has been shown that TRIM9 is localized to the neurons in the normal human brain and its immunoreactivity in affected brain areas in Parkinson's disease and dementia with Lewy bodies is severely decreased, possibly playing an important role in the regulation of neuronal function and participating in pathological process of Lewy body disease through its ligase. TRIM67 negatively regulates Ras activity via degradation of 80K-H , leading to neural differentiation, including neuritogenesis. Length = 172 |
| >gnl|CDD|240486 cd12906, SPRY_SOCS1-2-4, SPRY domain in the suppressor of cytokine signaling 1, 2, 4 families (SOCS1, SOCS2, SOCS4) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 182 GEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAV 230
E F + D +LD+D T++F +GQ+LG+AF + LK YP V
Sbjct: 115 DENFVVPDKFLVVLDMDEGTLSFVVDGQYLGVAF---RGLKGKTLYPIV 160
|
The SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. All four SPSB proteins interact with c-Met, the hepatocyte growth factor receptor, but only SPSB1, SPSB2, and SPSB4 interact with prostate apoptosis response protein 4 (Par-4). They are negative regulators that recruit the ECS E3 ubiquitin ligase complex to polyubiquitinate inducible nitric-oxide synthase (iNOS), resulting in its proteasomal degradation, thus contributing to protection against the cytotoxic effect of iNOS in activated macrophages. It has been shown that SPSB1 and SPSB4 induce the degradation of iNOS more strongly than SPSB2. The Drosophila melanogaster SPSB1 homolog, GUSTAVUS, interacts with the DEAD box RNA helicase Vasa. Suppressor of cytokine signaling (SOCS) proteins negatively regulate signaling from JAK-associated cytokine receptor complexes, and play key roles in the regulation of immune homeostasis. Length = 174 |
| >gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of cytokine signaling (SOCS) proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 28/142 (19%)
Query: 119 GCRANKGVYGRGKYYYEATVTDEGLCR-----VGWSTSQA-------VRDLGTDRFGFGF 166
R G Y RG + +E V EG R VG +T A V LG+D +G+
Sbjct: 32 AIRGKIG-YSRGLHAWE--VKWEGRQRGSHAVVGVATKDAPLQCDGYVALLGSDSESWGW 88
Query: 167 G-GTGK-----KSNNKQF--DNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNIS 218
T K K + + E + + D + +LD+++ T+AF NG++LG+AF
Sbjct: 89 DLSTNKLYHDGKVVIGSYPAGSATENYSVPDRVLVILDMEDGTLAFEANGEYLGVAFR-- 146
Query: 219 QQLKNSAFYPAV--VLKNAEMS 238
L YPAV V N E+
Sbjct: 147 -GLPGKLLYPAVSAVYGNCEIR 167
|
This family consists of the SPRY domain-containing SOCS box protein family (SPSB1-4, also known as SSB-1 to -4) as well as F-box protein 45 (Fbxo45), a novel synaptic E3 and ubiquitin ligase. The SPSB protein is composed of a central SPRY protein interaction domain and a C-terminal SOCS box. SPSB1, SPSB2, and SPSB4 interact with prostate apoptosis response protein 4 (Par-4) and are negative regulators that recruit the ECS E3 ubiquitin ligase complex to polyubiquitinate inducible nitric-oxide synthase (iNOS), resulting in its proteasomal degradation. Fbxo45 is related to this family; it is located N-terminal to the SPRY domain, and known to induce the degradation of a synaptic vesicle-priming factor, Munc13-1, via the SPRY domain, thus playing an important role in the regulation of neurotransmission by modulating Munc13-1 at the synapse. Suppressor of cytokine signaling (SOCS) proteins negatively regulate signaling from JAK-associated cytokine receptor complexes, and play key roles in the regulation of immune homeostasis. Length = 171 |
| >gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 189 DVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVV 231
D I C+LD++ T++F KNG+ G+AF + + ++ YP V+
Sbjct: 106 DYITCVLDMEERTLSFGKNGEEPGVAF---EDVDSTELYPCVM 145
|
This SPRY domain is found in the HERC1, a large protein related to chromosome condensation regulator RCC1. It is widely expressed in many tissues, playing an important role in intracellular membrane trafficking in the cytoplasm as well as Golgi apparatus. HERC1 also interacts with tuberous sclerosis 2 (TSC2, tuberin), which suppresses cell growth, and results in the destabilization of TSC2. However, the biological function of HERC1 has yet to be defined. Length = 160 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 26 TDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
T Q AIPLI G +VL+++ TGSGKT A L II
Sbjct: 34 TPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAII 69
|
Length = 876 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 651 | |||
| KOG0349|consensus | 725 | 100.0 | ||
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0328|consensus | 400 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0348|consensus | 708 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0346|consensus | 569 | 100.0 | ||
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0347|consensus | 731 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0341|consensus | 610 | 100.0 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0337|consensus | 529 | 100.0 | ||
| KOG0327|consensus | 397 | 100.0 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0339|consensus | 731 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| KOG0334|consensus | 997 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0329|consensus | 387 | 100.0 | ||
| KOG4284|consensus | 980 | 100.0 | ||
| KOG0350|consensus | 620 | 100.0 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0344|consensus | 593 | 100.0 | ||
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.98 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.97 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.97 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.97 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.97 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.97 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.96 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.96 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.95 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.95 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.95 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.94 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.94 | |
| KOG0351|consensus | 941 | 99.93 | ||
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.93 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.93 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.93 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.93 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.93 | |
| KOG0352|consensus | 641 | 99.92 | ||
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.92 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.92 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.91 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.91 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.91 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.9 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.9 | |
| KOG0952|consensus | 1230 | 99.88 | ||
| KOG0353|consensus | 695 | 99.86 | ||
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.86 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.86 | |
| KOG0354|consensus | 746 | 99.85 | ||
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.85 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.8 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.8 | |
| KOG0947|consensus | 1248 | 99.8 | ||
| PRK09694 | 878 | helicase Cas3; Provisional | 99.77 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.76 | |
| KOG0951|consensus | 1674 | 99.76 | ||
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.73 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.73 | |
| KOG0948|consensus | 1041 | 99.72 | ||
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.72 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.7 | |
| PF00622 | 124 | SPRY: SPRY domain; InterPro: IPR003877 The SPRY do | 99.65 | |
| smart00449 | 122 | SPRY Domain in SPla and the RYanodine Receptor. Do | 99.63 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.62 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.61 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.55 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.51 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.45 | |
| KOG0950|consensus | 1008 | 99.45 | ||
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.41 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.41 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.38 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.35 | |
| KOG4150|consensus | 1034 | 99.33 | ||
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.26 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.26 | |
| KOG0922|consensus | 674 | 99.21 | ||
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.19 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.15 | |
| KOG2626|consensus | 544 | 99.13 | ||
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.13 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.11 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.1 | |
| KOG0924|consensus | 1042 | 99.09 | ||
| KOG0949|consensus | 1330 | 99.04 | ||
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.01 | |
| KOG0923|consensus | 902 | 98.97 | ||
| KOG0920|consensus | 924 | 98.94 | ||
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 98.89 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 98.87 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.83 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.81 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.75 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 98.73 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.7 | |
| KOG0926|consensus | 1172 | 98.68 | ||
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.65 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.65 | |
| KOG0925|consensus | 699 | 98.63 | ||
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.62 | |
| KOG2340|consensus | 698 | 98.55 | ||
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.54 | |
| KOG2243|consensus | 5019 | 98.53 | ||
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.51 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 98.42 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.36 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.33 | |
| KOG1123|consensus | 776 | 98.3 | ||
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.27 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.24 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.23 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.19 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 98.14 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.09 | |
| KOG0951|consensus | 1674 | 98.08 | ||
| KOG0953|consensus | 700 | 97.96 | ||
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 97.92 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.77 | |
| KOG3953|consensus | 242 | 97.72 | ||
| KOG0385|consensus | 971 | 97.64 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 97.64 | |
| KOG2242|consensus | 558 | 97.63 | ||
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 97.55 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 97.45 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 97.44 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.35 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.3 | |
| KOG0952|consensus | 1230 | 97.3 | ||
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.16 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 97.15 | |
| KOG1000|consensus | 689 | 97.0 | ||
| KOG0390|consensus | 776 | 96.87 | ||
| KOG0387|consensus | 923 | 96.75 | ||
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 96.58 | |
| KOG0331|consensus | 519 | 96.58 | ||
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 96.41 | |
| KOG0332|consensus | 477 | 96.4 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 96.35 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 96.25 | |
| KOG0389|consensus | 941 | 96.21 | ||
| KOG1803|consensus | 649 | 96.07 | ||
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 96.04 | |
| KOG1477|consensus | 469 | 95.86 | ||
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 95.78 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 95.74 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 95.73 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.73 | |
| KOG4030|consensus | 197 | 95.69 | ||
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 95.64 | |
| KOG1132|consensus | 945 | 95.59 | ||
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 95.42 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.32 | |
| KOG1002|consensus | 791 | 94.4 | ||
| KOG0384|consensus | 1373 | 94.28 | ||
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 94.16 | |
| KOG1802|consensus | 935 | 93.9 | ||
| KOG4439|consensus | 901 | 93.86 | ||
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 93.78 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.76 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 93.74 | |
| KOG0328|consensus | 400 | 93.7 | ||
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 93.65 | |
| KOG0327|consensus | 397 | 93.59 | ||
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 93.35 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 93.14 | |
| KOG0392|consensus | 1549 | 92.94 | ||
| KOG0921|consensus | 1282 | 92.81 | ||
| PF13245 | 76 | AAA_19: Part of AAA domain | 92.63 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 92.46 | |
| KOG1805|consensus | 1100 | 92.44 | ||
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 92.42 | |
| KOG1477|consensus | 469 | 92.37 | ||
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 92.25 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 92.06 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 91.84 | |
| KOG0335|consensus | 482 | 91.45 | ||
| KOG1001|consensus | 674 | 91.43 | ||
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 90.99 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 90.48 | |
| PRK06526 | 254 | transposase; Provisional | 90.37 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 90.32 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 90.14 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 90.1 | |
| KOG0342|consensus | 543 | 89.97 | ||
| KOG0338|consensus | 691 | 89.93 | ||
| PRK05642 | 234 | DNA replication initiation factor; Validated | 89.1 | |
| KOG0391|consensus | 1958 | 88.94 | ||
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 88.73 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 88.4 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 88.39 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 87.94 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 87.79 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 87.71 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 87.65 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 87.3 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 86.42 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 86.24 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 86.21 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 86.2 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 85.95 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 85.82 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 85.71 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 85.63 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 85.6 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 85.47 | |
| PRK08181 | 269 | transposase; Validated | 85.44 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 85.42 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 85.4 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 85.31 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 85.27 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 85.23 | |
| PRK08727 | 233 | hypothetical protein; Validated | 84.81 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 84.69 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 84.68 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 84.62 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 84.53 | |
| KOG0989|consensus | 346 | 84.5 | ||
| KOG0388|consensus | 1185 | 84.41 | ||
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 84.16 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 83.86 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 83.77 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 83.48 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 83.45 | |
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 83.44 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 83.43 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 83.21 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 83.1 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 83.07 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 82.96 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 82.92 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 82.92 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 82.77 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 82.76 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 82.62 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 82.54 | |
| PRK13764 | 602 | ATPase; Provisional | 82.3 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 82.02 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 81.94 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 81.8 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 81.47 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 81.45 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 81.37 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 81.33 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 81.31 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 81.14 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 81.1 | |
| PRK13850 | 670 | type IV secretion system protein VirD4; Provisiona | 80.61 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 80.57 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 80.44 | |
| PRK08116 | 268 | hypothetical protein; Validated | 80.3 | |
| PRK13897 | 606 | type IV secretion system component VirD4; Provisio | 80.07 |
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-150 Score=1149.79 Aligned_cols=628 Identities=62% Similarity=1.054 Sum_probs=594.4
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
|+||+|+|+.|||..|.++|+|.+||++|+||||+||+|+||||+|+||||||+||+||+||+|+|++++..+++...+.
T Consensus 1 m~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~ 80 (725)
T KOG0349|consen 1 MTAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGG 80 (725)
T ss_pred CcchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998886454
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
..-.....|.|+.+||+.++||++||+.||||..++|+|||+|.|+.|+||||||+|++|+|||||||||..+++|+||+
T Consensus 81 ~~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~ 160 (725)
T KOG0349|consen 81 MADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTG 160 (725)
T ss_pred ccCCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCcc
Confidence 44445556999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
..+||||||||||+|+|||+|||||+.+||||||||+|+++|+|||||+.||.||++|.++.|+.|||||++||+|++||
T Consensus 161 ~~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fN 240 (725)
T KOG0349|consen 161 LDGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFN 240 (725)
T ss_pred ccccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccc--cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESAD--VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRE 318 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~--~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v 318 (651)
||.+||++||...+++.++++-+-+.+.+..- +.....++.++.|+++|+.|+||||+|+++.+++|..++++|.++.
T Consensus 241 FG~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~ 320 (725)
T KOG0349|consen 241 FGSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRS 320 (725)
T ss_pred cCCCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhh
Confidence 99999999999999999999999777765543 5555667789999999999999999999999999999999999999
Q ss_pred EEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 319 LLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 319 ~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
.+++||.-...|...++.+.||+||||+|+.+++.++.+.+.++++||+||||.++.+++-+.|.++...+|+..+++.+
T Consensus 321 lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~r 400 (725)
T KOG0349|consen 321 LLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFR 400 (725)
T ss_pred hhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHH---------------------
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL--------------------- 457 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l--------------------- 457 (651)
.|.+++|||++..+|..+.+++|..|.|+++.+++..+++++|+++.+++.-+..|..+
T Consensus 401 lq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~S 480 (725)
T KOG0349|consen 401 LQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVS 480 (725)
T ss_pred cccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCC
Confidence 99999999999999999999999999999999999999999998887765532222222
Q ss_pred -------------------------------------------------------------------------hhccccc
Q psy8712 458 -------------------------------------------------------------------------RSHIQTD 464 (651)
Q Consensus 458 -------------------------------------------------------------------------~~~~~~~ 464 (651)
++...+.
T Consensus 481 pe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk 560 (725)
T KOG0349|consen 481 PENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK 560 (725)
T ss_pred CCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE
Confidence 2333445
Q ss_pred eeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCccccc
Q psy8712 465 GVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTD 544 (651)
Q Consensus 465 ~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~ 544 (651)
.+.|||+++|||||.++.++||..+|.+..+|+|||||+||+.+.|.||+|+...+|++||| .|.+|++.|.|++|.+
T Consensus 561 flictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh--~c~srgr~c~nt~l~e 638 (725)
T KOG0349|consen 561 FLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYH--WCKSRGRSCNNTNLTE 638 (725)
T ss_pred EEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeeh--hhhccCCcccCCcccc
Confidence 56678999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred ccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccccccccCCcccCCCceeecceecccCccchhhHhhhh
Q psy8712 545 VKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEIPADEFDGKVVYGQKRVNMGSSYENHVTQME 624 (651)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 624 (651)
..| |+|||+|+.+|.+||+|+|++|.++++++++|+++|+++|+||+++..+++.|++|++.+.
T Consensus 639 ~~g----------------c~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdgkv~ygqk~~~~g~~y~~hv~~l~ 702 (725)
T KOG0349|consen 639 VRG----------------CCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVYGQKNLRTGSGYEDHVEQLV 702 (725)
T ss_pred ccc----------------eEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCCeEEecccccccCCCccchHHHhh
Confidence 988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy8712 625 PSVNKLSKLESKAQLIYLKHHQ 646 (651)
Q Consensus 625 ~~~~el~~le~~~~~~~~~~~~ 646 (651)
+.|.+|.+||.+.|..||...+
T Consensus 703 ptv~~l~~le~~sqs~fl~~~~ 724 (725)
T KOG0349|consen 703 PTVRKLTELELQSQSLFLKRLK 724 (725)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998764
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-66 Score=524.48 Aligned_cols=293 Identities=34% Similarity=0.542 Sum_probs=266.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
-+|.+|||+|+++++++++||..||+||++|||.+|+|+||+..|+||||||+||+||++|.+++.
T Consensus 61 ~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-------------- 126 (476)
T KOG0330|consen 61 KSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-------------- 126 (476)
T ss_pred cchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC--------------
Confidence 369999999999999999999999999999999999999999999999999999999999998870
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 127 -------------------------------------------------------------------------------- 126 (476)
T KOG0330|consen 127 -------------------------------------------------------------------------------- 126 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 127 -------------------------------------------------------------------------------- 126 (476)
T KOG0330|consen 127 -------------------------------------------------------------------------------- 126 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
+..+++|||+||||||.||.++++.++..++ +++.++
T Consensus 127 ----------------------------------------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig---lr~~~l 163 (476)
T KOG0330|consen 127 ----------------------------------------PKLFFALVLTPTRELAQQIAEQFEALGSGIG---LRVAVL 163 (476)
T ss_pred ----------------------------------------CCCceEEEecCcHHHHHHHHHHHHHhccccC---eEEEEE
Confidence 2236899999999999999999999998776 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHh-CCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS-GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~-~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
.||.+...|...|.+.|||||+|||+|.+++. .+.++++++++||+||||+++++.|.+.+..|++.+|. .+|
T Consensus 164 vGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~------erq 237 (476)
T KOG0330|consen 164 VGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR------ERQ 237 (476)
T ss_pred ecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc------cce
Confidence 99999999999999999999999999999998 67889999999999999999999999999999999997 799
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcch-------------------------HHHHH
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ-------------------------DETWG 455 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~-------------------------~~~~~ 455 (651)
+++|||||+. .+.++....+.+|+.|.+.....+.+.+.|.|.+++... ...+.
T Consensus 238 t~LfsATMt~-kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~l 316 (476)
T KOG0330|consen 238 TFLFSATMTK-KVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFL 316 (476)
T ss_pred EEEEEeecch-hhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHH
Confidence 9999999997 999999999999999999888888888877776665432 11111
Q ss_pred HH---------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 456 RL---------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 456 ~l---------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
.+ +.....++++|||+.+||+|+|.|++|||||+|.+..+||||+||+||+|+
T Consensus 317 a~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGr 396 (476)
T KOG0330|consen 317 ALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGR 396 (476)
T ss_pred HHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCC
Confidence 11 344567889999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeC
Q psy8712 509 MGLAISLVST 518 (651)
Q Consensus 509 ~G~ai~lv~~ 518 (651)
+|.+|+||+.
T Consensus 397 sG~~ItlVtq 406 (476)
T KOG0330|consen 397 SGKAITLVTQ 406 (476)
T ss_pred CcceEEEEeh
Confidence 9999999997
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=522.63 Aligned_cols=299 Identities=33% Similarity=0.543 Sum_probs=262.6
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
+|+++++++++.++|...||..|||||+.+||.++.|+|++..|.||||||+||+||+++.+.+..
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~-------------- 157 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ-------------- 157 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc--------------
Confidence 699999999999999999999999999999999999999999999999999999999999887610
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 158 -------------------------------------------------------------------------------- 157 (519)
T KOG0331|consen 158 -------------------------------------------------------------------------------- 157 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 158 -------------------------------------------------------------------------------- 157 (519)
T KOG0331|consen 158 -------------------------------------------------------------------------------- 157 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
......++|++|||+||||||.|+.+.+..++..+. +++.|++
T Consensus 158 ----------------------------------~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~---~~~~cvy 200 (519)
T KOG0331|consen 158 ----------------------------------GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLR---LRSTCVY 200 (519)
T ss_pred ----------------------------------ccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCC---ccEEEEe
Confidence 001124589999999999999999999999998776 9999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.+...|...|++++||+|+|||||.+++..+.++++++.++|+||||+|+++||.++++.|+..+|.. ..|++
T Consensus 201 GG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~-----~rQtl 275 (519)
T KOG0331|consen 201 GGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRP-----DRQTL 275 (519)
T ss_pred CCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCC-----cccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999653 45999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCC--CccCceE----------------------------EEEEEeCcchH-
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGED--AVPETVH----------------------------HVVVKIDPQQD- 451 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~--~~~~~i~----------------------------~~~~~~~~~~~- 451 (651)
++|||+|. .|+.++..|+.+|..+.+...+ ....+|. .+++||+.++.
T Consensus 276 m~saTwp~-~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~ 354 (519)
T KOG0331|consen 276 MFSATWPK-EVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTC 354 (519)
T ss_pred EEeeeccH-HHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhH
Confidence 99999997 9999999999999999887553 2223333 35666665432
Q ss_pred -HHHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 452 -ETWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 452 -~~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
++...+ ++.-+..+|+|||+++||||||+|++|||||+|.+.++|+||+|||||
T Consensus 355 ~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGR 434 (519)
T KOG0331|consen 355 DELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGR 434 (519)
T ss_pred HHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCcccc
Confidence 111111 333455667789999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeeC
Q psy8712 506 AERMGLAISLVST 518 (651)
Q Consensus 506 ~g~~G~ai~lv~~ 518 (651)
+|++|.|++|++.
T Consensus 435 a~~~G~A~tfft~ 447 (519)
T KOG0331|consen 435 AGKKGTAITFFTS 447 (519)
T ss_pred CCCCceEEEEEeH
Confidence 9999999999998
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=497.69 Aligned_cols=296 Identities=31% Similarity=0.497 Sum_probs=265.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|.+|+|+..|++++..+||..|||||..+||..|-|+|+|.+|-||||||.||+||+|.+++...+
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk------------ 248 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK------------ 248 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc------------
Confidence 47999999999999999999999999999999999999999999999999999999999999876100
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 249 -------------------------------------------------------------------------------- 248 (691)
T KOG0338|consen 249 -------------------------------------------------------------------------------- 248 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 249 -------------------------------------------------------------------------------- 248 (691)
T KOG0338|consen 249 -------------------------------------------------------------------------------- 248 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
.....++|||+||||||.|++++.++++.+.+ |.+.++
T Consensus 249 ---------------------------------------~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~---I~~~L~ 286 (691)
T KOG0338|consen 249 ---------------------------------------KVAATRVLVLVPTRELAIQVHSVTKQLAQFTD---ITVGLA 286 (691)
T ss_pred ---------------------------------------cCcceeEEEEeccHHHHHHHHHHHHHHHhhcc---ceeeee
Confidence 01134899999999999999999999999987 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||-+.+.|...|+..|||||+|||||.|++++ ..+.+++|..||+||||+||+.+|.+++..|++.+|+ ++|
T Consensus 287 vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk------~RQ 360 (691)
T KOG0338|consen 287 VGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPK------NRQ 360 (691)
T ss_pred ecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccc------ccc
Confidence 999999999999999999999999999999976 5789999999999999999999999999999999999 799
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE----------------------------EEEEeCcchHH
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH----------------------------VVVKIDPQQDE 452 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~----------------------------~~~~~~~~~~~ 452 (651)
+++|||||+. .|.+|+..-++.|+.|.+.+.......+.| .++|+.+++..
T Consensus 361 TmLFSATMte-eVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~A 439 (691)
T KOG0338|consen 361 TMLFSATMTE-EVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQA 439 (691)
T ss_pred ceeehhhhHH-HHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHH
Confidence 9999999997 999999999999999998887766555544 34444443321
Q ss_pred HH---------------------------HHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 453 TW---------------------------GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 453 ~~---------------------------~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
.- ...++..+++.+.+||.++|||||++|..||||++|.+.+.|+||+|||+|
T Consensus 440 HRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTAR 519 (691)
T KOG0338|consen 440 HRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTAR 519 (691)
T ss_pred HHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhh
Confidence 11 111566788999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeeC
Q psy8712 506 AERMGLAISLVST 518 (651)
Q Consensus 506 ~g~~G~ai~lv~~ 518 (651)
+|+.|.+++|+.+
T Consensus 520 AGRaGrsVtlvgE 532 (691)
T KOG0338|consen 520 AGRAGRSVTLVGE 532 (691)
T ss_pred cccCcceEEEecc
Confidence 9999999999998
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=525.15 Aligned_cols=295 Identities=38% Similarity=0.605 Sum_probs=264.4
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
.|++|++.++++++|.++||..|||||+.+||.+|.|+||++.|+||||||+||+||+|+.+... .
T Consensus 30 ~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~--------~------ 95 (513)
T COG0513 30 EFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS--------V------ 95 (513)
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--------c------
Confidence 59999999999999999999999999999999999999999999999999999999999986540 0
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 96 -------------------------------------------------------------------------------- 95 (513)
T COG0513 96 -------------------------------------------------------------------------------- 95 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 96 -------------------------------------------------------------------------------- 95 (513)
T COG0513 96 -------------------------------------------------------------------------------- 95 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
....+.+|||+||||||.|+++.+..++++.. ++++.+++
T Consensus 96 --------------------------------------~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~--~~~~~~i~ 135 (513)
T COG0513 96 --------------------------------------ERKYVSALILAPTRELAVQIAEELRKLGKNLG--GLRVAVVY 135 (513)
T ss_pred --------------------------------------ccCCCceEEECCCHHHHHHHHHHHHHHHhhcC--CccEEEEE
Confidence 00011299999999999999999999999873 38999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.+...|...|++++||||+||||++|++..+.+++++++++|+||||+|+++||.+++..|+..+|. +.|++
T Consensus 136 GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~------~~qtl 209 (513)
T COG0513 136 GGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP------DRQTL 209 (513)
T ss_pred CCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc------ccEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 68999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCCC--ccCceEEEEEEeCcch--HHHHHH----------------------
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDA--VPETVHHVVVKIDPQQ--DETWGR---------------------- 456 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~--~~~~i~~~~~~~~~~~--~~~~~~---------------------- 456 (651)
+||||+++ .+..+++.++++|..+.+..... ....|.|.++.++... ...+..
T Consensus 210 lfSAT~~~-~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~ 288 (513)
T COG0513 210 LFSATMPD-DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEE 288 (513)
T ss_pred EEecCCCH-HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHH
Confidence 99999998 89999999999999998886555 8889999999888643 111111
Q ss_pred ----H-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 457 ----L-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 457 ----l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
+ ++.....++++||.++||||||+|++|||||+|.++++|+||+|||||+|
T Consensus 289 l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG 368 (513)
T COG0513 289 LAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG 368 (513)
T ss_pred HHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCC
Confidence 1 23345566778999999999999999999999999999999999999999
Q ss_pred CceEEEEeeeC
Q psy8712 508 RMGLAISLVST 518 (651)
Q Consensus 508 ~~G~ai~lv~~ 518 (651)
+.|.+++|+.+
T Consensus 369 ~~G~ai~fv~~ 379 (513)
T COG0513 369 RKGVAISFVTE 379 (513)
T ss_pred CCCeEEEEeCc
Confidence 99999999997
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=458.85 Aligned_cols=316 Identities=30% Similarity=0.533 Sum_probs=285.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|++|||..++++++.+.||..|+.||+.|||.|+.|+||+++|..|+|||.+|.+.+||.+.-
T Consensus 27 ~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~--------------- 91 (400)
T KOG0328|consen 27 PTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI--------------- 91 (400)
T ss_pred cchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc---------------
Confidence 58999999999999999999999999999999999999999999999999999999999985432
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 92 -------------------------------------------------------------------------------- 91 (400)
T KOG0328|consen 92 -------------------------------------------------------------------------------- 91 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 92 -------------------------------------------------------------------------------- 91 (400)
T KOG0328|consen 92 -------------------------------------------------------------------------------- 91 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
..+..|+|||+||||||.|+.+++..++.+++ +++..+
T Consensus 92 ---------------------------------------~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn---vq~hac 129 (400)
T KOG0328|consen 92 ---------------------------------------SVRETQALILSPTRELAVQIQKVILALGDYMN---VQCHAC 129 (400)
T ss_pred ---------------------------------------ccceeeEEEecChHHHHHHHHHHHHHhccccc---ceEEEE
Confidence 01234899999999999999999999999987 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.+..+.+..+.-+.|++.|||||++++++.+.+..+.+++||+||||.|++.||..++..|++.+|+ ..|+
T Consensus 130 igg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~------~~Qv 203 (400)
T KOG0328|consen 130 IGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPP------GAQV 203 (400)
T ss_pred ecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCC------CceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 7999
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCc--------------------------chHHHHH
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDP--------------------------QQDETWG 455 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~--------------------------~~~~~~~ 455 (651)
+++|||+|. ++.++.++||.+|+.+-+++.+...+.|+|+++.++. +.+-.|.
T Consensus 204 v~~SATlp~-eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwL 282 (400)
T KOG0328|consen 204 VLVSATLPH-EILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 282 (400)
T ss_pred EEEeccCcH-HHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHH
Confidence 999999996 9999999999999999999888877766666555544 3322222
Q ss_pred HH---------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 456 RL---------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 456 ~l---------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
.- ++..+..++.+||..+||||+|.|++|||||+|.+.+.|+|||||.||+|+
T Consensus 283 tekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGR 362 (400)
T KOG0328|consen 283 TEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 362 (400)
T ss_pred HHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCC
Confidence 11 344456677789999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 509 MGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 509 ~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
+|.||.|+.. +|.+.|++||+++...|.++
T Consensus 363 kGvainFVk~--------------------------------------------------~d~~~lrdieq~yst~i~em 392 (400)
T KOG0328|consen 363 KGVAINFVKS--------------------------------------------------DDLRILRDIEQYYSTQIDEM 392 (400)
T ss_pred cceEEEEecH--------------------------------------------------HHHHHHHHHHHHHhhhcccc
Confidence 9999999987 78999999999999999988
Q ss_pred ccc
Q psy8712 589 DDK 591 (651)
Q Consensus 589 ~~~ 591 (651)
|..
T Consensus 393 p~n 395 (400)
T KOG0328|consen 393 PMN 395 (400)
T ss_pred cch
Confidence 755
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-58 Score=479.04 Aligned_cols=317 Identities=32% Similarity=0.489 Sum_probs=279.0
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
|.+|||.|++.++++++.+.||..|||||..|||+.+..+|+|..|+||||||+||++|+|..+..+.+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~----------- 312 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPP----------- 312 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCC-----------
Confidence 578999999999999999999999999999999999999999999999999999999999997755100
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 313 -------------------------------------------------------------------------------- 312 (673)
T KOG0333|consen 313 -------------------------------------------------------------------------------- 312 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 313 -------------------------------------------------------------------------------- 312 (673)
T KOG0333|consen 313 -------------------------------------------------------------------------------- 312 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
+ .+......+|.++||+||||||+||.+...+|++.+. ++++.
T Consensus 313 -----------~-----------------------~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg---~r~vs 355 (673)
T KOG0333|consen 313 -----------M-----------------------ARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG---IRTVS 355 (673)
T ss_pred -----------c-----------------------chhhhcccCceeeeechHHHHHHHHHHHHHHhccccc---ceEEE
Confidence 0 0000123578999999999999999999999999886 99999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCC-----
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSD----- 395 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~----- 395 (651)
++||.+.++|--.|..+|+|+|+||++|.+.+.+..+.++++.+||+||||+|+|+||.+++..++..+|.....
T Consensus 356 vigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde 435 (673)
T KOG0333|consen 356 VIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDE 435 (673)
T ss_pred EecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccc
Confidence 999999999988899999999999999999999999999999999999999999999999999999999975432
Q ss_pred --CCc------------eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchH----------
Q psy8712 396 --GKR------------LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD---------- 451 (651)
Q Consensus 396 --~~~------------~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~---------- 451 (651)
+.. +|+++||||+++ .+..+++.++++|+++.+.......+.++|.++.+...++
T Consensus 436 ~~~~~~~~~~~~~~k~yrqT~mftatm~p-~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~ 514 (673)
T KOG0333|consen 436 KEGEERVRKNFSSSKKYRQTVMFTATMPP-AVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILES 514 (673)
T ss_pred hhhHHHHHhhcccccceeEEEEEecCCCh-HHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHh
Confidence 222 899999999998 9999999999999999999888888888887776654331
Q ss_pred ------------------------------------------HHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCC
Q psy8712 452 ------------------------------------------ETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTL 489 (651)
Q Consensus 452 ------------------------------------------~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl 489 (651)
+.....++....++++|||++.||||||||++|||||+
T Consensus 515 ~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 515 NFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecch
Confidence 11111134445677889999999999999999999999
Q ss_pred CCChhhhhhhcCccccCCCceEEEEeeeCCccccccc
Q psy8712 490 PDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYH 526 (651)
Q Consensus 490 P~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~ 526 (651)
+.++++|+||||||||+|+.|.|++|++++|..+||.
T Consensus 595 aksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYD 631 (673)
T ss_pred hhhHHHHHHHhccccccccCceeEEEeccchhHHHHH
Confidence 9999999999999999999999999999999888887
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=455.57 Aligned_cols=316 Identities=31% Similarity=0.522 Sum_probs=283.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
.||+++|.++|+..+-++||..|+|||.++||..|.|+|+|+.|..|+|||.||++|+|..+..
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~---------------- 149 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP---------------- 149 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc----------------
Confidence 5999999999999999999999999999999999999999999999999999999999985532
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 150 -------------------------------------------------------------------------------- 149 (459)
T KOG0326|consen 150 -------------------------------------------------------------------------------- 149 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 150 -------------------------------------------------------------------------------- 149 (459)
T KOG0326|consen 150 -------------------------------------------------------------------------------- 149 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
..+..|++||+||||||.|+.+.++.+++++. +++...+
T Consensus 150 --------------------------------------~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~---i~vmvtt 188 (459)
T KOG0326|consen 150 --------------------------------------KKNVIQAIILVPTRELALQTSQVCKELSKHLG---IKVMVTT 188 (459)
T ss_pred --------------------------------------cccceeEEEEeecchhhHHHHHHHHHHhcccC---eEEEEec
Confidence 13356899999999999999999999999997 9999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.+..+.+-.+...+|++||||||++|+..++.-.+++..++|+||||.|++..|.+.+.+++..||+ ++|++
T Consensus 189 GGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~------~rQil 262 (459)
T KOG0326|consen 189 GGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPK------ERQIL 262 (459)
T ss_pred CCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCc------cceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCCCccC-------------------------ceEEEEEEeCcchHHHHHHH
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE-------------------------TVHHVVVKIDPQQDETWGRL 457 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~-------------------------~i~~~~~~~~~~~~~~~~~l 457 (651)
++|||+|- .|..|..++|++|-.|.+-.+ ..+. .|.|.+++|++.++-.+...
T Consensus 263 lySATFP~-tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAk 340 (459)
T KOG0326|consen 263 LYSATFPL-TVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAK 340 (459)
T ss_pred EEecccch-hHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHH
Confidence 99999996 999999999999988876543 2222 34566666666553222211
Q ss_pred ---------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce
Q psy8712 458 ---------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG 510 (651)
Q Consensus 458 ---------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G 510 (651)
+++..+..++|+|.+-||||++.|++|||||+|++.|+|+||+||.||+|.-|
T Consensus 341 KITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 341 KITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred HHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 44556788999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccccc
Q psy8712 511 LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDD 590 (651)
Q Consensus 511 ~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~ 590 (651)
.||+|++. +|...|..||+.++.+|..+|+
T Consensus 421 lAInLity--------------------------------------------------edrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 421 LAINLITY--------------------------------------------------EDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred eEEEEEeh--------------------------------------------------hhhhhHHHHHHHhccccccCCC
Confidence 99999987 7899999999999999999986
Q ss_pred ccc
Q psy8712 591 KLE 593 (651)
Q Consensus 591 ~~~ 593 (651)
.+.
T Consensus 451 ~iD 453 (459)
T KOG0326|consen 451 NID 453 (459)
T ss_pred cCC
Confidence 643
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=457.04 Aligned_cols=317 Identities=29% Similarity=0.479 Sum_probs=274.0
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
|..|+.|||+||+.+.|.+||+..|||||+.+||.||.|+|++-+|.||||||.||.||+|+++.+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse-------------- 71 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE-------------- 71 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc--------------
Confidence 568999999999999999999999999999999999999999999999999999999999998866
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 72 -------------------------------------------------------------------------------- 71 (442)
T KOG0340|consen 72 -------------------------------------------------------------------------------- 71 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 72 -------------------------------------------------------------------------------- 71 (442)
T KOG0340|consen 72 -------------------------------------------------------------------------------- 71 (442)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
.+.+..+||++||||||.|+.++|.-+++.+. +++.+
T Consensus 72 ----------------------------------------dP~giFalvlTPTrELA~QiaEQF~alGk~l~---lK~~v 108 (442)
T KOG0340|consen 72 ----------------------------------------DPYGIFALVLTPTRELALQIAEQFIALGKLLN---LKVSV 108 (442)
T ss_pred ----------------------------------------CCCcceEEEecchHHHHHHHHHHHHHhccccc---ceEEE
Confidence 12244799999999999999999999999886 99999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC----CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCC
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG----HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDG 396 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~----~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~ 396 (651)
++||.+.-.|...|.+.||+||+||||+.+++.++ ...+++++++|+||||++++..|.+++.-+...+|.
T Consensus 109 ivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~----- 183 (442)
T KOG0340|consen 109 IVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPK----- 183 (442)
T ss_pred EEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCC-----
Confidence 99999999999999999999999999999998875 235799999999999999999999999999999998
Q ss_pred CceeEEEEeeccChHHHHHHHHHhccC--CeEEEccCCCCccCceEEEEEEeCcchHHHH--------------------
Q psy8712 397 KRLQMIVCSATLHDFDVKKMAERLMYF--PTWVDLKGEDAVPETVHHVVVKIDPQQDETW-------------------- 454 (651)
Q Consensus 397 ~~~Q~l~~SATl~~~~v~~l~~~~l~~--p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~-------------------- 454 (651)
.+|.++||||+++ .+..+...-... +-.+.......+++.+.+-++.|+..-++.+
T Consensus 184 -~RQtLlfSATitd-~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFv 261 (442)
T KOG0340|consen 184 -PRQTLLFSATITD-TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFV 261 (442)
T ss_pred -ccceEEEEeehhh-HHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEe
Confidence 5899999999996 676665544443 3344555566777777777776654321111
Q ss_pred --------HHH---------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhh
Q psy8712 455 --------GRL---------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHR 499 (651)
Q Consensus 455 --------~~l---------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihR 499 (651)
... ++.....++.+||+++||+|||.|.+|||||+|.++.+|+||
T Consensus 262 nttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHR 341 (442)
T KOG0340|consen 262 NTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHR 341 (442)
T ss_pred ehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHh
Confidence 000 334456678899999999999999999999999999999999
Q ss_pred cCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHH
Q psy8712 500 IGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEE 579 (651)
Q Consensus 500 iGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~ 579 (651)
+||++|+|+.|.+|+|+++ .|..++..||+
T Consensus 342 vGRtARAGR~G~aiSivt~--------------------------------------------------rDv~l~~aiE~ 371 (442)
T KOG0340|consen 342 VGRTARAGRKGMAISIVTQ--------------------------------------------------RDVELLQAIEE 371 (442)
T ss_pred hcchhcccCCcceEEEech--------------------------------------------------hhHHHHHHHHH
Confidence 9999999999999999997 68999999999
Q ss_pred HhcCcccccccc
Q psy8712 580 HLNVTIQQVDDK 591 (651)
Q Consensus 580 ~~~~~i~~~~~~ 591 (651)
.+|.+..+.+..
T Consensus 372 ~igkKl~e~~~~ 383 (442)
T KOG0340|consen 372 EIGKKLTEYNKV 383 (442)
T ss_pred HHhccccccccc
Confidence 999988877644
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=462.42 Aligned_cols=225 Identities=29% Similarity=0.507 Sum_probs=195.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc-cCCcEEEECchhhHHHHhCC--CcccCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS-SGVDIVVGTPGRMEDLISGG--HLSLTHC 362 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~-~~~dIlV~TP~rL~~ll~~~--~l~l~~l 362 (651)
-+|||+||||||.||.+++..|..++. .+++.+++||.+.......++ +++.|+|||||||.+++.+. .++++++
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~--~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLP--NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhh--ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhcccccc
Confidence 589999999999999999999998864 699999999999988887765 58999999999999999874 4556799
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCC--ccCceE
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA--VPETVH 440 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~--~~~~i~ 440 (651)
.+||+||||+++++||..++..|+..||+ ++++-+||||.+. ++.++....++||+.|.+..... +|..+.
T Consensus 159 e~LVLDEADrLldmgFe~~~n~ILs~LPK------QRRTGLFSATq~~-~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~ 231 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFEASVNTILSFLPK------QRRTGLFSATQTQ-EVEDLARAGLRNPVRVSVKEKSKSATPSSLA 231 (567)
T ss_pred ceEEecchHhHhcccHHHHHHHHHHhccc------ccccccccchhhH-HHHHHHHhhccCceeeeecccccccCchhhc
Confidence 99999999999999999999999999999 5788999999997 99999999999999999887775 787888
Q ss_pred EEEEEeCcchHH--------------------------HHHHH----------------------------hhcccccee
Q psy8712 441 HVVVKIDPQQDE--------------------------TWGRL----------------------------RSHIQTDGV 466 (651)
Q Consensus 441 ~~~~~~~~~~~~--------------------------~~~~l----------------------------~~~~~~~~l 466 (651)
..|+.|++..+- .|..+ +.......+
T Consensus 232 ~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl 311 (567)
T KOG0345|consen 232 LEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVL 311 (567)
T ss_pred ceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceE
Confidence 777777665421 11111 122334456
Q ss_pred eccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 467 HARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
.+||+++||||||+|++||+||+|.++..|+||+|||||+|+.|.||+|+.+.
T Consensus 312 ~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 312 FCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPR 364 (567)
T ss_pred EeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEeccc
Confidence 68999999999999999999999999999999999999999999999999983
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=456.64 Aligned_cols=298 Identities=32% Similarity=0.468 Sum_probs=257.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
..|+++.|+|...+|+.+|||...|+||+.+||.+|.|+||+++|.||||||+||+||+++.++....
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~------------ 149 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF------------ 149 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhccc------------
Confidence 36899999999999999999999999999999999999999999999999999999999998877110
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 150 -------------------------------------------------------------------------------- 149 (543)
T KOG0342|consen 150 -------------------------------------------------------------------------------- 149 (543)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 150 -------------------------------------------------------------------------------- 149 (543)
T KOG0342|consen 150 -------------------------------------------------------------------------------- 149 (543)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++..+|||+||||||.|++.+++.+.++.. ++.+..+
T Consensus 150 --------------------------------------~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~--~~~v~~v 189 (543)
T KOG0342|consen 150 --------------------------------------KPRNGTGVLIICPTRELAMQIFAEAKELLKYHE--SITVGIV 189 (543)
T ss_pred --------------------------------------CCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC--CcceEEE
Confidence 012345799999999999999999999998863 4899999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.......+.+.+++.|+|+|||||+|++.+. .+.+++++++|+||||+++++||.+++++|++.+|+ ++|
T Consensus 190 iGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk------~rq 263 (543)
T KOG0342|consen 190 IGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPK------QRQ 263 (543)
T ss_pred eCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccc------cce
Confidence 9999999888999899999999999999999874 445678899999999999999999999999999998 799
Q ss_pred EEEEeeccChHHHHHHHHHhcc-CCeEEEccCC--CCccCceEEEEEEeCcchH--HHHHHH------------------
Q psy8712 401 MIVCSATLHDFDVKKMAERLMY-FPTWVDLKGE--DAVPETVHHVVVKIDPQQD--ETWGRL------------------ 457 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~-~p~~i~~~~~--~~~~~~i~~~~~~~~~~~~--~~~~~l------------------ 457 (651)
.++||||.++ .|+++++-.++ +|..|.+... ..+.+.+.|.++.++.... ..+..+
T Consensus 264 t~LFSAT~~~-kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~ 342 (543)
T KOG0342|consen 264 TLLFSATQPS-KVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMS 342 (543)
T ss_pred eeEeeCCCcH-HHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhH
Confidence 9999999997 99999988775 5888887654 3566777776666655442 000001
Q ss_pred ---------------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccc
Q psy8712 458 ---------------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504 (651)
Q Consensus 458 ---------------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~G 504 (651)
+..-+..++.|||+.+||+|+|+|++||+||+|.++++||||+||||
T Consensus 343 vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTa 422 (543)
T KOG0342|consen 343 VKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTA 422 (543)
T ss_pred HHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhcccc
Confidence 22223456778999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeeeC
Q psy8712 505 RAERMGLAISLVST 518 (651)
Q Consensus 505 R~g~~G~ai~lv~~ 518 (651)
|.|+.|.+++|+.+
T Consensus 423 R~gk~G~alL~l~p 436 (543)
T KOG0342|consen 423 REGKEGKALLLLAP 436 (543)
T ss_pred ccCCCceEEEEeCh
Confidence 99999999999998
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=477.36 Aligned_cols=323 Identities=32% Similarity=0.467 Sum_probs=275.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
+.|++|||+++++++|.++||..|||||++|||.++.|+|++++||||||||+||++|+++.+......
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~----------- 76 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP----------- 76 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc-----------
Confidence 369999999999999999999999999999999999999999999999999999999999988651000
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 77 -------------------------------------------------------------------------------- 76 (423)
T PRK04837 77 -------------------------------------------------------------------------------- 76 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 77 -------------------------------------------------------------------------------- 76 (423)
T PRK04837 77 -------------------------------------------------------------------------------- 76 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
......++++|||+||||||.|+++.+..+.+..+ +++..+
T Consensus 77 ------------------------------------~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~---~~v~~~ 117 (423)
T PRK04837 77 ------------------------------------EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATG---LKLGLA 117 (423)
T ss_pred ------------------------------------cccccCCceEEEECCcHHHHHHHHHHHHHHhccCC---ceEEEE
Confidence 00012357999999999999999999999988775 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.+...+...+.+++||||+||++|.+++.++.+.++++++|||||||+|++++|..++..+++.++.. ...|.
T Consensus 118 ~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~----~~~~~ 193 (423)
T PRK04837 118 YGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA----NQRLN 193 (423)
T ss_pred ECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCc----cceeE
Confidence 99999999988899999999999999999999999999999999999999999999999999999998752 14688
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE-------------------------EEEEeCcchH--HHH
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH-------------------------VVVKIDPQQD--ETW 454 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~-------------------------~~~~~~~~~~--~~~ 454 (651)
++||||++. .+..++...+.+|..+.+.........+.+ .+++|+.... ...
T Consensus 194 ~l~SAT~~~-~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~ 272 (423)
T PRK04837 194 MLFSATLSY-RVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIW 272 (423)
T ss_pred EEEeccCCH-HHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence 999999996 899999999999988887766554444444 3444443321 111
Q ss_pred HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCc
Q psy8712 455 GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509 (651)
Q Consensus 455 ~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~ 509 (651)
..+ +...+..++++||.++||||+|+|++|||||+|.+.++|+||+||+||+|+.
T Consensus 273 ~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~ 352 (423)
T PRK04837 273 GHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGAS 352 (423)
T ss_pred HHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCC
Confidence 111 3344667788999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 510 GLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 510 G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
|.||+|+++ +|...++.||++++..++..+
T Consensus 353 G~ai~~~~~--------------------------------------------------~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 353 GHSISLACE--------------------------------------------------EYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred eeEEEEeCH--------------------------------------------------HHHHHHHHHHHHhCCCCCCcc
Confidence 999999988 677889999999998876543
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=460.24 Aligned_cols=306 Identities=32% Similarity=0.511 Sum_probs=254.0
Q ss_pred cccccCCCCHHHHHHHHH-cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 2 AAFEEMGVLPEIGKAVEE-MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~-~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
++|.+|||+|.+++.|+. |++..||.||+++||.||+|+|++|.|+||||||+|||||++|.+...-
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~------------ 203 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAME------------ 203 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcC------------
Confidence 579999999999999966 9999999999999999999999999999999999999999999886510
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
|
T Consensus 204 ------~------------------------------------------------------------------------- 204 (708)
T KOG0348|consen 204 ------P------------------------------------------------------------------------- 204 (708)
T ss_pred ------c-------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
++
T Consensus 205 -----------------------------------------------------------ki------------------- 206 (708)
T KOG0348|consen 205 -----------------------------------------------------------KI------------------- 206 (708)
T ss_pred -----------------------------------------------------------cc-------------------
Confidence 00
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
-...+|.||||+||||||.|+|+.++++.+.+- .|-...
T Consensus 207 ---------------------------------------~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h--WIVPg~ 245 (708)
T KOG0348|consen 207 ---------------------------------------QRSDGPYALVIVPTRELALQIYETVQKLLKPFH--WIVPGV 245 (708)
T ss_pred ---------------------------------------cccCCceEEEEechHHHHHHHHHHHHHHhcCce--EEeece
Confidence 024578999999999999999999999987654 466678
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCc----cC-
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI----TS- 394 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~----~~- 394 (651)
+.||...+.....|++|+.|+|+|||||+|++.+ ..+.++++++||+||||+|++.||..+|..|++.+... +.
T Consensus 246 lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~ 325 (708)
T KOG0348|consen 246 LMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKD 325 (708)
T ss_pred eecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhccc
Confidence 8999999999999999999999999999998876 57789999999999999999999999999999887331 11
Q ss_pred --CCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC-------------------------CCccCceEEEEEEeC
Q psy8712 395 --DGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE-------------------------DAVPETVHHVVVKID 447 (651)
Q Consensus 395 --~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~-------------------------~~~~~~i~~~~~~~~ 447 (651)
-.+..|.+++|||+++ .|.+|+..-++||..|.++.. -..|+.+.|.|+.|+
T Consensus 326 ~~lp~q~q~mLlSATLtd-~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVP 404 (708)
T KOG0348|consen 326 PKLPHQLQNMLLSATLTD-GVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVP 404 (708)
T ss_pred ccccHHHHhHhhhhhhHH-HHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecC
Confidence 1124799999999997 999999999999999883221 124555666666665
Q ss_pred cchHHHHH------------------------------------------------------------------------
Q psy8712 448 PQQDETWG------------------------------------------------------------------------ 455 (651)
Q Consensus 448 ~~~~~~~~------------------------------------------------------------------------ 455 (651)
+.-+-...
T Consensus 405 pKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Qe 484 (708)
T KOG0348|consen 405 PKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQE 484 (708)
T ss_pred CchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHH
Confidence 54211000
Q ss_pred ------HHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 456 ------RLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 456 ------~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
..+..-...++.|||+++||||+|+|.+||.||.|.+..+|+||+|||+|+|..|.+++|+.+
T Consensus 485 eRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P 553 (708)
T KOG0348|consen 485 ERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLP 553 (708)
T ss_pred HHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecc
Confidence 001112233566899999999999999999999999999999999999999999999999999
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=456.19 Aligned_cols=296 Identities=31% Similarity=0.536 Sum_probs=259.1
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
-|++|+|+....++|++.+|..||.||+.+||..|.|+|||.+|.||||||+||++|+|+.++..
T Consensus 70 kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~--------------- 134 (758)
T KOG0343|consen 70 KFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL--------------- 134 (758)
T ss_pred hHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc---------------
Confidence 59999999999999999999999999999999999999999999999999999999999998871
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
.|.+
T Consensus 135 ---------------------------------kWs~------------------------------------------- 138 (758)
T KOG0343|consen 135 ---------------------------------KWSP------------------------------------------- 138 (758)
T ss_pred ---------------------------------CCCC-------------------------------------------
Confidence 1211
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 139 -------------------------------------------------------------------------------- 138 (758)
T KOG0343|consen 139 -------------------------------------------------------------------------------- 138 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
..+.-||||+||||||.|+++++.+.+++-. ++..+++
T Consensus 139 ---------------------------------------~DGlGalIISPTRELA~QtFevL~kvgk~h~---fSaGLii 176 (758)
T KOG0343|consen 139 ---------------------------------------TDGLGALIISPTRELALQTFEVLNKVGKHHD---FSAGLII 176 (758)
T ss_pred ---------------------------------------CCCceeEEecchHHHHHHHHHHHHHHhhccc---cccceee
Confidence 1123489999999999999999999999876 9999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
||.+.+.....+. +..|+|||||||++++... .++.+++.+||+||||+|+++||...+..|+..+|+ .+|+
T Consensus 177 GG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~------~RQT 249 (758)
T KOG0343|consen 177 GGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPK------KRQT 249 (758)
T ss_pred cCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCCh------hhee
Confidence 9999887776664 5899999999999999764 678899999999999999999999999999999999 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccC--CCCccCceEEEEEEeCcchH--HHH-----------------------
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKG--EDAVPETVHHVVVKIDPQQD--ETW----------------------- 454 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~--~~~~~~~i~~~~~~~~~~~~--~~~----------------------- 454 (651)
++||||-+. .|.++++..+++|..|.+.. ...+|+++.|.|+.|+...+ -+|
T Consensus 250 LLFSATqt~-svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf 328 (758)
T KOG0343|consen 250 LLFSATQTK-SVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKF 328 (758)
T ss_pred eeeecccch-hHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHH
Confidence 999999996 99999999999999988873 35789999998888876542 122
Q ss_pred -----HHHhhcc------------------------ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 455 -----GRLRSHI------------------------QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 455 -----~~l~~~~------------------------~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
.+++.++ ...++.|||..+||+|+|.|++||++|+|.++++||||+||++|
T Consensus 329 ~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR 408 (758)
T KOG0343|consen 329 LYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTAR 408 (758)
T ss_pred HHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhc
Confidence 2222222 23446689999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeeCC
Q psy8712 506 AERMGLAISLVSTV 519 (651)
Q Consensus 506 ~g~~G~ai~lv~~~ 519 (651)
.+..|.+++++++.
T Consensus 409 ~~~~G~sll~L~ps 422 (758)
T KOG0343|consen 409 YKERGESLLMLTPS 422 (758)
T ss_pred ccCCCceEEEEcch
Confidence 99999999999983
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=471.13 Aligned_cols=318 Identities=36% Similarity=0.593 Sum_probs=273.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
+|++|||+++|+++|.++||..|||+|++|||.++.|+|++++||||||||+||++|+++.+......
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~------------ 69 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH------------ 69 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc------------
Confidence 69999999999999999999999999999999999999999999999999999999999977540000
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 70 -------------------------------------------------------------------------------- 69 (456)
T PRK10590 70 -------------------------------------------------------------------------------- 69 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 70 -------------------------------------------------------------------------------- 69 (456)
T PRK10590 70 -------------------------------------------------------------------------------- 69 (456)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
......+++|||+||+|||.|+.+.++.+.++++ +++..++
T Consensus 70 ------------------------------------~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~---~~~~~~~ 110 (456)
T PRK10590 70 ------------------------------------AKGRRPVRALILTPTRELAAQIGENVRDYSKYLN---IRSLVVF 110 (456)
T ss_pred ------------------------------------cccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC---CEEEEEE
Confidence 0001235899999999999999999999988776 8999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.+...+...+..+++|+|+||++|++++....+.++++++|||||||+|++++|..++..++..++. ..|++
T Consensus 111 gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~------~~q~l 184 (456)
T PRK10590 111 GGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA------KRQNL 184 (456)
T ss_pred CCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCc------cCeEE
Confidence 999999998888899999999999999999998899999999999999999999999999999999987 68999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEE-------------------------EEeCcchH--HHHH
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVV-------------------------VKIDPQQD--ETWG 455 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~-------------------------~~~~~~~~--~~~~ 455 (651)
+||||+++ .+..++..++.+|..+.+.........+.+.+ ++|++... ....
T Consensus 185 ~~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~ 263 (456)
T PRK10590 185 LFSATFSD-DIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAE 263 (456)
T ss_pred EEeCCCcH-HHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHH
Confidence 99999997 89999999999998887766555555555444 44443321 1111
Q ss_pred HH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce
Q psy8712 456 RL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG 510 (651)
Q Consensus 456 ~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G 510 (651)
.+ ++..+..++++|+.+.+|||+|+|++|||||+|.+.++|+||+|||||+|+.|
T Consensus 264 ~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G 343 (456)
T PRK10590 264 QLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343 (456)
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCe
Confidence 11 33345677889999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 511 LAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 511 ~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
.|++|+.. +|...++.||+.++.+++..
T Consensus 344 ~ai~l~~~--------------------------------------------------~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 344 EALSLVCV--------------------------------------------------DEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred eEEEEecH--------------------------------------------------HHHHHHHHHHHHhcCCCccc
Confidence 99999987 68889999999999887544
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=480.63 Aligned_cols=298 Identities=31% Similarity=0.482 Sum_probs=253.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|+++++++.|+++|.++||..|||||++|||.++.|+|++++||||||||+||+||++..+.....
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~------------ 197 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL------------ 197 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------------
Confidence 57999999999999999999999999999999999999999999999999999999999987654100
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 198 -------------------------------------------------------------------------------- 197 (545)
T PTZ00110 198 -------------------------------------------------------------------------------- 197 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 198 -------------------------------------------------------------------------------- 197 (545)
T PTZ00110 198 -------------------------------------------------------------------------------- 197 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
.....+|++|||+||||||.|+.+.++.|+.... +++.++
T Consensus 198 -------------------------------------~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~---i~~~~~ 237 (545)
T PTZ00110 198 -------------------------------------LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSK---IRNTVA 237 (545)
T ss_pred -------------------------------------ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccC---ccEEEE
Confidence 0012367899999999999999999999987765 899999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.+...+...+.++++|||+||++|.+++.++...++++++|||||||+|++++|.+++..|+..++. .+|+
T Consensus 238 ~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~------~~q~ 311 (545)
T PTZ00110 238 YGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP------DRQT 311 (545)
T ss_pred eCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCC------CCeE
Confidence 9999999999999999999999999999999999889999999999999999999999999999999876 6899
Q ss_pred EEEeeccChHHHHHHHHHhcc-CCeEEEccCCC-CccCceEE---------------------------EEEEeCcchHH
Q psy8712 402 IVCSATLHDFDVKKMAERLMY-FPTWVDLKGED-AVPETVHH---------------------------VVVKIDPQQDE 452 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~-~p~~i~~~~~~-~~~~~i~~---------------------------~~~~~~~~~~~ 452 (651)
++||||++. ++..+++.++. +|..+.+.... ....++.+ .+++|++.+..
T Consensus 312 l~~SAT~p~-~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a 390 (545)
T PTZ00110 312 LMWSATWPK-EVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGA 390 (545)
T ss_pred EEEEeCCCH-HHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHH
Confidence 999999997 89999998886 57766654332 12233333 44455443311
Q ss_pred --HHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 453 --TWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 453 --~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
....+ ++..+..+|++|+.++||||+|+|++|||||+|.+.++|+||+|||||
T Consensus 391 ~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 391 DFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred HHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 11111 223355678899999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeeC
Q psy8712 506 AERMGLAISLVST 518 (651)
Q Consensus 506 ~g~~G~ai~lv~~ 518 (651)
+|+.|.|++|+++
T Consensus 471 ~G~~G~ai~~~~~ 483 (545)
T PTZ00110 471 AGAKGASYTFLTP 483 (545)
T ss_pred CCCCceEEEEECc
Confidence 9999999999998
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=483.34 Aligned_cols=315 Identities=34% Similarity=0.552 Sum_probs=275.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|++|+|+++|+++|.++||..|||+|+++||.++.|+||+++||||||||+||++|+++.+..
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~--------------- 70 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP--------------- 70 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh---------------
Confidence 57999999999999999999999999999999999999999999999999999999999986643
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 71 -------------------------------------------------------------------------------- 70 (629)
T PRK11634 71 -------------------------------------------------------------------------------- 70 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 71 -------------------------------------------------------------------------------- 70 (629)
T PRK11634 71 -------------------------------------------------------------------------------- 70 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
....|++|||+||+|||.|+++.++.+.+++. ++++..+
T Consensus 71 ---------------------------------------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~--~i~v~~~ 109 (629)
T PRK11634 71 ---------------------------------------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMR--GVNVVAL 109 (629)
T ss_pred ---------------------------------------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC--CceEEEE
Confidence 01246899999999999999999999987764 5899999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.+...+...+..+++|||+||+++.+++.++.+.++++++|||||||+|++++|..++..++..+|. ..|+
T Consensus 110 ~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~------~~q~ 183 (629)
T PRK11634 110 YGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE------GHQT 183 (629)
T ss_pred ECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC------CCeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEE-------------------------EeCcchH--HHH
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVV-------------------------KIDPQQD--ETW 454 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~-------------------------~~~~~~~--~~~ 454 (651)
++||||+|+ .+..+++.++.+|..+.+.........+.+.++ +|++... .+.
T Consensus 184 llfSAT~p~-~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~ 262 (629)
T PRK11634 184 ALFSATMPE-AIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVA 262 (629)
T ss_pred EEEEccCCh-hHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHH
Confidence 999999997 899999999999988887766655555555443 4433321 111
Q ss_pred HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCc
Q psy8712 455 GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509 (651)
Q Consensus 455 ~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~ 509 (651)
..| +...+.+++++||.+.+|||+|+|++|||||+|.+.++|+||+|||||+|+.
T Consensus 263 ~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 263 EALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342 (629)
T ss_pred HHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCc
Confidence 111 2334667888999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 510 GLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 510 G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
|.|++|+.+ .|...++.||+.++..++.++
T Consensus 343 G~ai~~v~~--------------------------------------------------~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 343 GRALLFVEN--------------------------------------------------RERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred ceEEEEech--------------------------------------------------HHHHHHHHHHHHhCCCcceec
Confidence 999999987 577888999999998887664
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-53 Score=470.59 Aligned_cols=294 Identities=35% Similarity=0.531 Sum_probs=257.1
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
|++|++|+|+|++.++|.++||..|||+|++|||.++.|+|++++||||||||+||++|+++.+..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-------------- 68 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-------------- 68 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh--------------
Confidence 678999999999999999999999999999999999999999999999999999999999986633
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (460)
T PRK11776 69 -------------------------------------------------------------------------------- 68 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (460)
T PRK11776 69 -------------------------------------------------------------------------------- 68 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
....+++|||+||+|||.|+.+.++.+..... ++++..
T Consensus 69 ----------------------------------------~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~--~~~v~~ 106 (460)
T PRK11776 69 ----------------------------------------KRFRVQALVLCPTRELADQVAKEIRRLARFIP--NIKVLT 106 (460)
T ss_pred ----------------------------------------ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC--CcEEEE
Confidence 01134799999999999999999999987653 489999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.+...+...+..+++|+|+||+++.+++.++.+.++++++|||||||+|++++|..++..++..+|. ..|
T Consensus 107 ~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~------~~q 180 (460)
T PRK11776 107 LCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA------RRQ 180 (460)
T ss_pred EECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc------ccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcch-------------------------H--H-
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ-------------------------D--E- 452 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~-------------------------~--~- 452 (651)
+++||||+++ .+..++..++.+|..+.+..... ...+.+.++.++... . .
T Consensus 181 ~ll~SAT~~~-~~~~l~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l 258 (460)
T PRK11776 181 TLLFSATYPE-GIAAISQRFQRDPVEVKVESTHD-LPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEV 258 (460)
T ss_pred EEEEEecCcH-HHHHHHHHhcCCCEEEEECcCCC-CCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHH
Confidence 9999999997 99999999999998888765443 334555555444322 1 0
Q ss_pred ------------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 453 ------------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 453 ------------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
.....++.....++++|+.+++|||+|++++|||||+|.+.++|+||+|||||+|+
T Consensus 259 ~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~ 338 (460)
T PRK11776 259 ADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGS 338 (460)
T ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCC
Confidence 11111334456778899999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeC
Q psy8712 509 MGLAISLVST 518 (651)
Q Consensus 509 ~G~ai~lv~~ 518 (651)
.|.|++|+.+
T Consensus 339 ~G~ai~l~~~ 348 (460)
T PRK11776 339 KGLALSLVAP 348 (460)
T ss_pred cceEEEEEch
Confidence 9999999988
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=438.41 Aligned_cols=300 Identities=31% Similarity=0.494 Sum_probs=254.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
+|++|||++-|++|+.++||..||-||+.|||++|.|+||++.|.||||||+||++|+||.++.....
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t------------ 87 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT------------ 87 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhc------------
Confidence 69999999999999999999999999999999999999999999999999999999999999872110
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 88 -------------------------------------------------------------------------------- 87 (569)
T KOG0346|consen 88 -------------------------------------------------------------------------------- 87 (569)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 88 -------------------------------------------------------------------------------- 87 (569)
T KOG0346|consen 88 -------------------------------------------------------------------------------- 87 (569)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
.....+|.++||+||||||+|+++++.++..+.+ ..+++.-+.
T Consensus 88 ------------------------------------~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~-k~lr~~nl~ 130 (569)
T KOG0346|consen 88 ------------------------------------NDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCS-KDLRAINLA 130 (569)
T ss_pred ------------------------------------ccccccceeEEEechHHHHHHHHHHHHHHHHHHH-Hhhhhhhhh
Confidence 0013467899999999999999999999987653 136666666
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCC-cccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~-l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
...+.......|...|||||+||++++.++..+. ..++.+.+||+||||.++..||.++++.+...||. ..|.
T Consensus 131 s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr------~~Q~ 204 (569)
T KOG0346|consen 131 SSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPR------IYQC 204 (569)
T ss_pred cccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCc------hhhh
Confidence 6666666668888999999999999999999887 57899999999999999999999999999999998 7999
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCC-ccCceEEEEEEeCcchHHHHHH------------------------
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA-VPETVHHVVVKIDPQQDETWGR------------------------ 456 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~------------------------ 456 (651)
+++|||+++ +|..+-+.++++|..+.+...+. .++.+.|+.+.|.+.++-....
T Consensus 205 ~LmSATl~d-Dv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~Yr 283 (569)
T KOG0346|consen 205 FLMSATLSD-DVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYR 283 (569)
T ss_pred eeehhhhhh-HHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHH
Confidence 999999997 99999999999999988876654 4678999988888554211110
Q ss_pred --H---------------------------hhccccceeecccc-----------------------------------c
Q psy8712 457 --L---------------------------RSHIQTDGVHARDN-----------------------------------A 472 (651)
Q Consensus 457 --l---------------------------~~~~~~~~l~~td~-----------------------------------~ 472 (651)
+ ++....+.+.+||. .
T Consensus 284 LkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GV 363 (569)
T KOG0346|consen 284 LKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGV 363 (569)
T ss_pred HHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhch
Confidence 0 12222334444441 2
Q ss_pred cCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 473 RPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 473 ~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
+||||+.+|+.|||||+|.+..+||||+|||+|++++|.+++|+.+
T Consensus 364 sRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 364 SRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred hccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecc
Confidence 3499999999999999999999999999999999999999999999
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-53 Score=474.44 Aligned_cols=299 Identities=27% Similarity=0.467 Sum_probs=255.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|+++|+++.|+++|.++||..|||+|.+|||.++.|+|++++||||||||+||++|+++.+......
T Consensus 121 ~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~----------- 189 (518)
T PLN00206 121 LSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSG----------- 189 (518)
T ss_pred cCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccc-----------
Confidence 579999999999999999999999999999999999999999999999999999999999877641000
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 190 -------------------------------------------------------------------------------- 189 (518)
T PLN00206 190 -------------------------------------------------------------------------------- 189 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 190 -------------------------------------------------------------------------------- 189 (518)
T PLN00206 190 -------------------------------------------------------------------------------- 189 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
......+|++|||+||||||.|+++.++.+.+.++ +++.++
T Consensus 190 ------------------------------------~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~---~~~~~~ 230 (518)
T PLN00206 190 ------------------------------------HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP---FKTALV 230 (518)
T ss_pred ------------------------------------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC---ceEEEE
Confidence 00012357899999999999999999999988765 899999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.....+...+..+++|+|+||++|.+++.++.+.++++++|||||||+|++++|.+++..++..++. .|+
T Consensus 231 ~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~-------~q~ 303 (518)
T PLN00206 231 VGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQ-------PQV 303 (518)
T ss_pred ECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCC-------CcE
Confidence 9999999998889999999999999999999999899999999999999999999999999999998864 799
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeC---------------------------cchHH--
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID---------------------------PQQDE-- 452 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~---------------------------~~~~~-- 452 (651)
++||||+++ .+..++..++.++..+.+.........+++.+..++ +....
T Consensus 304 l~~SATl~~-~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~ 382 (518)
T PLN00206 304 LLFSATVSP-EVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADL 382 (518)
T ss_pred EEEEeeCCH-HHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHH
Confidence 999999997 899999999999988887665554455555444443 32211
Q ss_pred HHHHH--------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccC
Q psy8712 453 TWGRL--------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRA 506 (651)
Q Consensus 453 ~~~~l--------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~ 506 (651)
....+ ++..+..++++|+.++||||+|+|++|||||+|.+.++|+||+|||||+
T Consensus 383 l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~ 462 (518)
T PLN00206 383 LANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRM 462 (518)
T ss_pred HHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccC
Confidence 00111 2233456788899999999999999999999999999999999999999
Q ss_pred CCceEEEEeeeC
Q psy8712 507 ERMGLAISLVST 518 (651)
Q Consensus 507 g~~G~ai~lv~~ 518 (651)
|+.|.|++|+++
T Consensus 463 g~~G~ai~f~~~ 474 (518)
T PLN00206 463 GEKGTAIVFVNE 474 (518)
T ss_pred CCCeEEEEEEch
Confidence 999999999987
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=472.54 Aligned_cols=302 Identities=30% Similarity=0.446 Sum_probs=255.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|++|+|+|+|+++|.++||..|||||+++||.++.|+||++.||||||||+||++|+++.+..... .
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~-------~---- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPA-------L---- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-------c----
Confidence 46999999999999999999999999999999999999999999999999999999999998765100 0
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 78 -------------------------------------------------------------------------------- 77 (572)
T PRK04537 78 -------------------------------------------------------------------------------- 77 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 78 -------------------------------------------------------------------------------- 77 (572)
T PRK04537 78 -------------------------------------------------------------------------------- 77 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
.......+++|||+||+|||.|+++.++.++..++ +++..+
T Consensus 78 ------------------------------------~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~---i~v~~l 118 (572)
T PRK04537 78 ------------------------------------ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLG---LRFALV 118 (572)
T ss_pred ------------------------------------cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCC---ceEEEE
Confidence 00012246899999999999999999999988765 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.+...+...+.+++||||+||++|++++.+. .+.++.+++|||||||+|++++|..++..+++.++.. ...|
T Consensus 119 ~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~----~~~q 194 (572)
T PRK04537 119 YGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER----GTRQ 194 (572)
T ss_pred ECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc----cCce
Confidence 9999999998889889999999999999998765 5778999999999999999999999999999998862 1479
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEE-------------------------EeCcchH--HH
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVV-------------------------KIDPQQD--ET 453 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~-------------------------~~~~~~~--~~ 453 (651)
+++||||++. .+..++..++.+|..+.+.........+.|.++ ||++... ..
T Consensus 195 ~ll~SATl~~-~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l 273 (572)
T PRK04537 195 TLLFSATLSH-RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERV 273 (572)
T ss_pred EEEEeCCccH-HHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHH
Confidence 9999999997 899999999998877766655544455555443 3433221 11
Q ss_pred -------------------------HHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 454 -------------------------WGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 454 -------------------------~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
....++..+..+|++||.+++|||+|+|++|||||+|.+.++|+||+||+||+|+
T Consensus 274 ~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 274 ARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGE 353 (572)
T ss_pred HHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCC
Confidence 1111334456788899999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeC
Q psy8712 509 MGLAISLVST 518 (651)
Q Consensus 509 ~G~ai~lv~~ 518 (651)
.|.||+|+++
T Consensus 354 ~G~ai~~~~~ 363 (572)
T PRK04537 354 EGDAISFACE 363 (572)
T ss_pred CceEEEEecH
Confidence 9999999987
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-53 Score=447.52 Aligned_cols=317 Identities=29% Similarity=0.433 Sum_probs=254.3
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC-CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG-GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGK 79 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g-~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~ 79 (651)
||||..|+|+++++++|..+||..||+||+.+||.+..| .||+-+|+||||||+||.+|++..+.++.....
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~------- 252 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ------- 252 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh-------
Confidence 689999999999999999999999999999999999998 899999999999999999999997776211000
Q ss_pred CccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCC
Q psy8712 80 AKAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGT 159 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~ 159 (651)
|-
T Consensus 253 -----------------------------e~------------------------------------------------- 254 (731)
T KOG0347|consen 253 -----------------------------EL------------------------------------------------- 254 (731)
T ss_pred -----------------------------hh-------------------------------------------------
Confidence 00
Q ss_pred CCCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccc
Q psy8712 160 DRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSF 239 (651)
Q Consensus 160 ~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~ 239 (651)
.|
T Consensus 255 -------------------------------------------------------------------------~~----- 256 (731)
T KOG0347|consen 255 -------------------------------------------------------------------------SN----- 256 (731)
T ss_pred -------------------------------------------------------------------------hh-----
Confidence 00
Q ss_pred ccCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEE
Q psy8712 240 NFGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIREL 319 (651)
Q Consensus 240 ~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~ 319 (651)
.......|.+||++||||||.|+.+.+..+..+.+ +++.
T Consensus 257 --------------------------------------~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~---i~v~ 295 (731)
T KOG0347|consen 257 --------------------------------------TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ---IRVA 295 (731)
T ss_pred --------------------------------------HHhccCcceeEEecChHHHHHHHHHHHHHhccccC---eEEE
Confidence 00012234599999999999999999999988765 9999
Q ss_pred EEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc---ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCC
Q psy8712 320 LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL---SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDG 396 (651)
Q Consensus 320 ~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l---~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~ 396 (651)
.++||.....|.+.|...|||||+|||||+.++..+.. .++++++||+||||+|++.|+...+..|++.|.. .+..
T Consensus 296 si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e-~~~~ 374 (731)
T KOG0347|consen 296 SITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNE-EQKN 374 (731)
T ss_pred EeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhh-hhcc
Confidence 99999999999999999999999999999999987654 5789999999999999999999999999999873 3445
Q ss_pred CceeEEEEeeccCh--------------------HHHHHHHHH--hccCCeEEEccCCCCccCce--------------E
Q psy8712 397 KRLQMIVCSATLHD--------------------FDVKKMAER--LMYFPTWVDLKGEDAVPETV--------------H 440 (651)
Q Consensus 397 ~~~Q~l~~SATl~~--------------------~~v~~l~~~--~l~~p~~i~~~~~~~~~~~i--------------~ 440 (651)
..+|++.||||++- ..+..+.+. +...|..|++.+...+...+ .
T Consensus 375 ~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~y 454 (731)
T KOG0347|consen 375 RQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLY 454 (731)
T ss_pred cccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCcccccee
Confidence 57899999999853 112222322 22467888877766443322 1
Q ss_pred E----------EEEEeCcchH-------------------------HHHHHH--hhccccceeeccccccCCCCCCCCCE
Q psy8712 441 H----------VVVKIDPQQD-------------------------ETWGRL--RSHIQTDGVHARDNARPGIDISGLPF 483 (651)
Q Consensus 441 ~----------~~~~~~~~~~-------------------------~~~~~l--~~~~~~~~l~~td~~~rGIDip~v~~ 483 (651)
. .++||++-+. ..+..| +......++.|||+++||||||+|.|
T Consensus 455 lyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~H 534 (731)
T KOG0347|consen 455 LYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQH 534 (731)
T ss_pred EEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcce
Confidence 1 2355555431 111111 45566778999999999999999999
Q ss_pred EEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccc
Q psy8712 484 IINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522 (651)
Q Consensus 484 VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~ 522 (651)
||||.+|.+.+-|+||.|||+|++..|..+.|+.+.+-.
T Consensus 535 VIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~ 573 (731)
T KOG0347|consen 535 VIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVG 573 (731)
T ss_pred EEEeecCCccceeEecccccccccCCCeEEEEeChHHhH
Confidence 999999999999999999999999999999999996533
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=450.78 Aligned_cols=229 Identities=30% Similarity=0.533 Sum_probs=200.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
+|++|||+||||||.|+++..+++..... +++...+||.+...+.+.+.+++||+|+|||||.+++..+.+.+++++
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~---~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSG---MKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhccccc---ceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 68999999999999999999999987665 999999999999999999999999999999999999999999999999
Q ss_pred eEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC-CeEEEccCCCCccCceEE
Q psy8712 364 FFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF-PTWVDLKGEDAVPETVHH 441 (651)
Q Consensus 364 ~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-p~~i~~~~~~~~~~~i~~ 441 (651)
+|||||||+|+| ++|.++|++|+..+.... ..++|.++||||+|. ++..++..++.+ ...+.+.......+++.|
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~--~~~~qt~mFSAtfp~-~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q 305 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPP--KNNRQTLLFSATFPK-EIQRLAADFLKDNYIFLAVGRVGSTSENITQ 305 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCC--ccceeEEEEeccCCh-hhhhhHHHHhhccceEEEEeeecccccccee
Confidence 999999999999 999999999999876532 237999999999997 898899988886 777777777777778877
Q ss_pred EEEEeCcch-------------------------------------------------------------HHHHHHHhhc
Q psy8712 442 VVVKIDPQQ-------------------------------------------------------------DETWGRLRSH 460 (651)
Q Consensus 442 ~~~~~~~~~-------------------------------------------------------------~~~~~~l~~~ 460 (651)
.+.+|+... .......++.
T Consensus 306 ~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 306 KILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred EeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 777776321 1111122455
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
....++++|++++||||||+|+||||||+|.+..+|+||||||||+|..|.+++|+..
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecc
Confidence 5667788999999999999999999999999999999999999999999999999985
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=431.70 Aligned_cols=227 Identities=29% Similarity=0.471 Sum_probs=194.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.++|.+|+++||||||.|+.-.+.++... +.+..|++||-+..+|.+.|+++++|+|+||++|.++...+.+++..
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~kysyn----g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~s 367 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKYSYN----GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLAS 367 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHhhhc----CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeee
Confidence 45788999999999999999999887643 48899999999999999999999999999999999999999999999
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCc-cCceE
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAV-PETVH 440 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~-~~~i~ 440 (651)
+.+|||||||+|||+||.+++++|+-.+.. ++|+++.|||+|+ .|+.|+..++++|..+.+..-+.. ...++
T Consensus 368 iTYlVlDEADrMLDMgFEpqIrkilldiRP------DRqtvmTSATWP~-~VrrLa~sY~Kep~~v~vGsLdL~a~~sVk 440 (629)
T KOG0336|consen 368 ITYLVLDEADRMLDMGFEPQIRKILLDIRP------DRQTVMTSATWPE-GVRRLAQSYLKEPMIVYVGSLDLVAVKSVK 440 (629)
T ss_pred eEEEEecchhhhhcccccHHHHHHhhhcCC------cceeeeecccCch-HHHHHHHHhhhCceEEEecccceeeeeeee
Confidence 999999999999999999999999888776 6999999999997 999999999999988877665533 23455
Q ss_pred EEEEEeCcch------------------------------------------------------HHHHHHHhhcccccee
Q psy8712 441 HVVVKIDPQQ------------------------------------------------------DETWGRLRSHIQTDGV 466 (651)
Q Consensus 441 ~~~~~~~~~~------------------------------------------------------~~~~~~l~~~~~~~~l 466 (651)
|.+ .+..+. ++.....++...+.++
T Consensus 441 Q~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrIL 519 (629)
T KOG0336|consen 441 QNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRIL 519 (629)
T ss_pred eeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEE
Confidence 544 222221 1111111344456778
Q ss_pred eccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 467 HARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
++||.++||||+++|+||+|||+|.+++.|+||+||+||+|+.|.+++|++..|
T Consensus 520 vaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D 573 (629)
T KOG0336|consen 520 VATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRND 573 (629)
T ss_pred EEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhh
Confidence 899999999999999999999999999999999999999999999999999754
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=438.63 Aligned_cols=305 Identities=32% Similarity=0.522 Sum_probs=264.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
-+|.+|-++..|++.|.+-|+..|||||-+-||.+|.|+|.+-.|-||||||+.|.||++-..++.-..
T Consensus 170 ksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~----------- 238 (610)
T KOG0341|consen 170 KSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMM----------- 238 (610)
T ss_pred hhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhc-----------
Confidence 379999999999999999999999999999999999999999999999999999999999988772110
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 239 -------------------------------------------------------------------------------- 238 (610)
T KOG0341|consen 239 -------------------------------------------------------------------------------- 238 (610)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
-||
T Consensus 239 ---------------------lPf-------------------------------------------------------- 241 (610)
T KOG0341|consen 239 ---------------------LPF-------------------------------------------------------- 241 (610)
T ss_pred ---------------------Ccc--------------------------------------------------------
Confidence 000
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCC---CCCeeE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFIT---DPKIRE 318 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~---~~~i~v 318 (651)
....+|..|||||+||||.|+++.+..+...+. .|.++.
T Consensus 242 --------------------------------------~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs 283 (610)
T KOG0341|consen 242 --------------------------------------ARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRS 283 (610)
T ss_pred --------------------------------------ccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 124588999999999999999999998876553 467999
Q ss_pred EEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 319 LLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 319 ~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
.+++||.+..+|...+++++||+|+|||||.|++.++.++++-+++|++||||+|+|+||.++++.|+..+.. .
T Consensus 284 ~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~------Q 357 (610)
T KOG0341|consen 284 LLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG------Q 357 (610)
T ss_pred hhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh------h
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE------------------------EEEEEeCcch----
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH------------------------HVVVKIDPQQ---- 450 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~------------------------~~~~~~~~~~---- 450 (651)
+|+++||||+|. .+..|++.-+..|+.|.+.+.....-++. .++++++.+.
T Consensus 358 RQTLLFSATMP~-KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~ 436 (610)
T KOG0341|consen 358 RQTLLFSATMPK-KIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDD 436 (610)
T ss_pred hheeeeeccccH-HHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHH
Confidence 899999999997 99999999999999998876543222211 1344444332
Q ss_pred -----------------------HHHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 451 -----------------------DETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 451 -----------------------~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
+......++..+.+++++||++++|+|+|++.||||||+|.++++|+||||||||.|
T Consensus 437 IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg 516 (610)
T KOG0341|consen 437 IHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG 516 (610)
T ss_pred HHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC
Confidence 112222356667788999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeeCC
Q psy8712 508 RMGLAISLVSTV 519 (651)
Q Consensus 508 ~~G~ai~lv~~~ 519 (651)
+.|.|.+|+...
T Consensus 517 ~~GiATTfINK~ 528 (610)
T KOG0341|consen 517 KTGIATTFINKN 528 (610)
T ss_pred Ccceeeeeeccc
Confidence 999999999874
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=453.77 Aligned_cols=297 Identities=35% Similarity=0.509 Sum_probs=257.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
.|++|+++|+++++|.++||..||++|++|||.++.|+|++++||||||||+||++|+++.+.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~------------- 68 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR------------- 68 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------------
Confidence 6999999999999999999999999999999999999999999999999999999999997764000
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (434)
T PRK11192 69 -------------------------------------------------------------------------------- 68 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (434)
T PRK11192 69 -------------------------------------------------------------------------------- 68 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
.....+++|||+||+|||.|+++.+..+....+ +++..++
T Consensus 69 -------------------------------------~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~---~~v~~~~ 108 (434)
T PRK11192 69 -------------------------------------RKSGPPRILILTPTRELAMQVADQARELAKHTH---LDIATIT 108 (434)
T ss_pred -------------------------------------cCCCCceEEEECCcHHHHHHHHHHHHHHHccCC---cEEEEEE
Confidence 001235899999999999999999999998776 9999999
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEE
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMI 402 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l 402 (651)
||.....+...+.++++|||+||++|++++.++.+.++++++|||||||+|++++|...+..+...++. ..|++
T Consensus 109 gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~------~~q~~ 182 (434)
T PRK11192 109 GGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW------RKQTL 182 (434)
T ss_pred CCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc------ccEEE
Confidence 999999998888889999999999999999999999999999999999999999999999999988876 68999
Q ss_pred EEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeC--------------------------cchH--HHH
Q psy8712 403 VCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID--------------------------PQQD--ETW 454 (651)
Q Consensus 403 ~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~--------------------------~~~~--~~~ 454 (651)
+||||++...+..+...++.+|..+.+.........+.+.+..++ +... ...
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~ 262 (434)
T PRK11192 183 LFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELA 262 (434)
T ss_pred EEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHH
Confidence 999999865789999999999988887766655555665554443 2221 111
Q ss_pred HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCc
Q psy8712 455 GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509 (651)
Q Consensus 455 ~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~ 509 (651)
..+ ++.....++++||.+.+|||+|+|++|||||+|.+.+.|+||+|||||+|+.
T Consensus 263 ~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~ 342 (434)
T PRK11192 263 GWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRK 342 (434)
T ss_pred HHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCC
Confidence 111 2334567788999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeC
Q psy8712 510 GLAISLVST 518 (651)
Q Consensus 510 G~ai~lv~~ 518 (651)
|.|++|+..
T Consensus 343 g~ai~l~~~ 351 (434)
T PRK11192 343 GTAISLVEA 351 (434)
T ss_pred ceEEEEecH
Confidence 999999987
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=420.17 Aligned_cols=371 Identities=29% Similarity=0.419 Sum_probs=321.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|..|||+..+.+++.+-||..|||||++.||+||.|+||+..|-||||||+||++|+++.+...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~-------------- 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH-------------- 86 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhc--------------
Confidence 479999999999999999999999999999999999999999999999999999999999977541
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 87 -------------------------------------------------------------------------------- 86 (529)
T KOG0337|consen 87 -------------------------------------------------------------------------------- 86 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 87 -------------------------------------------------------------------------------- 86 (529)
T KOG0337|consen 87 -------------------------------------------------------------------------------- 86 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...+.+++|++||||||.|+.++++.+++... ++..++
T Consensus 87 ---------------------------------------s~~g~RalilsptreLa~qtlkvvkdlgrgt~---lr~s~~ 124 (529)
T KOG0337|consen 87 ---------------------------------------SQTGLRALILSPTRELALQTLKVVKDLGRGTK---LRQSLL 124 (529)
T ss_pred ---------------------------------------cccccceeeccCcHHHHHHHHHHHHHhccccc---hhhhhh
Confidence 01244899999999999999999999999886 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||...++|...|.+++|||++||++++++...-.+.|+.+.++|+||||+|+++||.+++.+++.++|. .+|+
T Consensus 125 ~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~------~~QT 198 (529)
T KOG0337|consen 125 VGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPE------SRQT 198 (529)
T ss_pred cccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCC------cceE
Confidence 9999999999999999999999999999988888899999999999999999999999999999999998 6799
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHH------------------------
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL------------------------ 457 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l------------------------ 457 (651)
++||||+|. .+-++++.-+.+|..+.++-+..+.+.++..+..+.+.++.....-
T Consensus 199 llfSatlp~-~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~ 277 (529)
T KOG0337|consen 199 LLFSATLPR-DLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYV 277 (529)
T ss_pred EEEeccCch-hhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHH
Confidence 999999997 8999999999999999999888888888887777766553322211
Q ss_pred -----------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 458 -----------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 458 -----------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
+..-+...++.||..+||+|||-++.|||||+|.+..-|+||+||+.|+|+
T Consensus 278 ~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragr 357 (529)
T KOG0337|consen 278 RGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGR 357 (529)
T ss_pred HHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccc
Confidence 122344556678999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 509 MGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 509 ~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
.|.+|+||.+ +|...+-+|+.+++.++.-.
T Consensus 358 tg~aYs~V~~--------------------------------------------------~~~~yl~DL~lflgr~~~~~ 387 (529)
T KOG0337|consen 358 TGRAYSLVAS--------------------------------------------------TDDPYLLDLQLFLGRPLIFA 387 (529)
T ss_pred cceEEEEEec--------------------------------------------------ccchhhhhhhhhcCCceeec
Confidence 9999999998 56667778888899876655
Q ss_pred cccccCCcccCCCceeecceecccCccchhhHhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8712 589 DDKLEIPADEFDGKVVYGQKRVNMGSSYENHVTQMEPSVNKLSKLESKAQLIYLKHHQAK 648 (651)
Q Consensus 589 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~el~~le~~~~~~~~~~~~~~ 648 (651)
....+... +...+.|..++...+...+.+..+.+.-.+|..+++.+.+++..|..++
T Consensus 388 ~~~~e~d~---~~t~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr 444 (529)
T KOG0337|consen 388 ISHFEYDC---DDTTVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTR 444 (529)
T ss_pred cchhhhcc---ccceeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccC
Confidence 54433333 2225678887777777777777888888999999999998888777664
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-51 Score=414.88 Aligned_cols=316 Identities=30% Similarity=0.523 Sum_probs=280.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKA 82 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~ 82 (651)
+|++|+|.++|++.+...||..|+.||+.||+++..|.|+.+.|.+|+|||.||+++++|.+.-
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~---------------- 90 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM---------------- 90 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc----------------
Confidence 7999999999999999999999999999999999999999999999999999999999996522
Q ss_pred ccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCC
Q psy8712 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRF 162 (651)
Q Consensus 83 ~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 162 (651)
T Consensus 91 -------------------------------------------------------------------------------- 90 (397)
T KOG0327|consen 91 -------------------------------------------------------------------------------- 90 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccC
Q psy8712 163 GFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 163 ~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
T Consensus 91 -------------------------------------------------------------------------------- 90 (397)
T KOG0327|consen 91 -------------------------------------------------------------------------------- 90 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
.....+||+++||||||.|+.++...++.+.+ +++..+.
T Consensus 91 --------------------------------------~~ke~qalilaPtreLa~qi~~v~~~lg~~~~---~~v~~~i 129 (397)
T KOG0327|consen 91 --------------------------------------SVKETQALILAPTRELAQQIQKVVRALGDHMD---VSVHACI 129 (397)
T ss_pred --------------------------------------chHHHHHHHhcchHHHHHHHHHHHHhhhcccc---eeeeeec
Confidence 01234899999999999999999999999886 9999999
Q ss_pred CCccHHHHHHHh-ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 323 GGVNVKDQMSVL-SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 323 Gg~~~~~q~~~L-~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
||.....+...+ ...++|+|||||++.+++..+.+..+.++++|+||||.|+..||.+++..|++.+|. +.|+
T Consensus 130 gg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~------~vQv 203 (397)
T KOG0327|consen 130 GGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS------DVQV 203 (397)
T ss_pred CcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCc------chhh
Confidence 999887555544 456999999999999999999999999999999999999999999999999999998 7899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchH------------------------------
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD------------------------------ 451 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~------------------------------ 451 (651)
+++|||+|+ ++..+.++++++|++|.++..+.+.+.++|+++.+..+.+
T Consensus 204 ~l~SAT~p~-~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~ 282 (397)
T KOG0327|consen 204 VLLSATMPS-DVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDK 282 (397)
T ss_pred eeecccCcH-HHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHHhhhcceEEecchhhHHHHHHH
Confidence 999999997 9999999999999999999999988888887776654431
Q ss_pred --------------------HHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceE
Q psy8712 452 --------------------ETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGL 511 (651)
Q Consensus 452 --------------------~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ 511 (651)
......++.....++..++.++||||+.+++.|||||+|...++|+||+||+||.|++|.
T Consensus 283 L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~ 362 (397)
T KOG0327|consen 283 LRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV 362 (397)
T ss_pred HhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCce
Confidence 111111333345556678999999999999999999999999999999999999999999
Q ss_pred EEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccc
Q psy8712 512 AISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDK 591 (651)
Q Consensus 512 ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~ 591 (651)
+++++.+ ++...|++||++++..|.++|..
T Consensus 363 ~in~v~~--------------------------------------------------~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 363 AINFVTE--------------------------------------------------EDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeeehH--------------------------------------------------hhHHHHHhHHHhcCCcceecccc
Confidence 9999998 68899999999999999999866
Q ss_pred c
Q psy8712 592 L 592 (651)
Q Consensus 592 ~ 592 (651)
.
T Consensus 393 ~ 393 (397)
T KOG0327|consen 393 F 393 (397)
T ss_pred h
Confidence 4
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=441.23 Aligned_cols=302 Identities=33% Similarity=0.530 Sum_probs=253.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
+.|++++|++.|+++|.++||..||++|++|||.++.|+||+++||||||||+||++|+++.+.+....
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~----------- 155 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP----------- 155 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc-----------
Confidence 469999999999999999999999999999999999999999999999999999999999987651000
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
+
T Consensus 156 -------------------------------------------------~------------------------------ 156 (475)
T PRK01297 156 -------------------------------------------------K------------------------------ 156 (475)
T ss_pred -------------------------------------------------c------------------------------
Confidence 0
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 157 -------------------------------------------------------------------------------- 156 (475)
T PRK01297 157 -------------------------------------------------------------------------------- 156 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
......+++|||+||+|||.|+++.++.+.+.++ +++..+
T Consensus 157 -------------------------------------~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~---~~v~~~ 196 (475)
T PRK01297 157 -------------------------------------ERYMGEPRALIIAPTRELVVQIAKDAAALTKYTG---LNVMTF 196 (475)
T ss_pred -------------------------------------ccccCCceEEEEeCcHHHHHHHHHHHHHhhccCC---CEEEEE
Confidence 0001246899999999999999999999988765 899999
Q ss_pred eCCccHHHHHHHhc-cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLS-SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~-~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.+...+.+.+. ..++|||+||++|++++.++.+.++++++|||||||++++++|.+.+..+++.++.. .+.|
T Consensus 197 ~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~----~~~q 272 (475)
T PRK01297 197 VGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK----EERQ 272 (475)
T ss_pred EccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC----CCce
Confidence 99998887777765 468999999999999999888899999999999999999999999999999988752 2479
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE-------------------------EEEEEeCcchHHHH-
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH-------------------------HVVVKIDPQQDETW- 454 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~-------------------------~~~~~~~~~~~~~~- 454 (651)
++++|||++. ++.++++.++.+|..+.+........++. +.+++|+.......
T Consensus 273 ~i~~SAT~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l 351 (475)
T PRK01297 273 TLLFSATFTD-DVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRI 351 (475)
T ss_pred EEEEEeecCH-HHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHH
Confidence 9999999987 89999999999988877665544433333 34555554432111
Q ss_pred -HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 455 -GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 455 -~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
..+ ++..+..++++|+.+.+|||+|+|++|||||+|.+..+|+||+||+||.|+
T Consensus 352 ~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~ 431 (475)
T PRK01297 352 EERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGA 431 (475)
T ss_pred HHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCC
Confidence 111 333456778899999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeC
Q psy8712 509 MGLAISLVST 518 (651)
Q Consensus 509 ~G~ai~lv~~ 518 (651)
.|.+++|+++
T Consensus 432 ~g~~i~~~~~ 441 (475)
T PRK01297 432 SGVSISFAGE 441 (475)
T ss_pred CceEEEEecH
Confidence 9999999987
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=420.09 Aligned_cols=303 Identities=30% Similarity=0.459 Sum_probs=269.2
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
.++|+.+|++..|..++.+..|..|||||..++|..|.|+||+-.|.||||||.||+.|.+..|.+...
T Consensus 222 vtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e----------- 290 (731)
T KOG0339|consen 222 VTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE----------- 290 (731)
T ss_pred cchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh-----------
Confidence 368999999999999999999999999999999999999999999999999999999999987766100
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 291 -------------------------------------------------------------------------------- 290 (731)
T KOG0339|consen 291 -------------------------------------------------------------------------------- 290 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 291 -------------------------------------------------------------------------------- 290 (731)
T KOG0339|consen 291 -------------------------------------------------------------------------------- 290 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
....++|..||++||||||.|++.++++|++..+ +++++
T Consensus 291 --------------------------------------L~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg---l~~v~ 329 (731)
T KOG0339|consen 291 --------------------------------------LKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG---LRVVA 329 (731)
T ss_pred --------------------------------------hcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc---ceEEE
Confidence 0124578999999999999999999999998876 99999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.+..+|...|+.++.|||+|||||+++++.+..++.++.+|||||||+|+++||.++++.|...+.. ++|
T Consensus 330 ~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirp------drQ 403 (731)
T KOG0339|consen 330 VYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRP------DRQ 403 (731)
T ss_pred eecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCC------cce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 799
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHH-----------------------
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRL----------------------- 457 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l----------------------- 457 (651)
+|+||||++. .|..+++.++.+|+.+.........+.|.|.+..|.+...++-..+
T Consensus 404 tllFsaTf~~-kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e 482 (731)
T KOG0339|consen 404 TLLFSATFKK-KIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAE 482 (731)
T ss_pred EEEeeccchH-HHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHH
Confidence 9999999986 9999999999999988777666667777777666655432211111
Q ss_pred -------------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccC
Q psy8712 458 -------------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRA 506 (651)
Q Consensus 458 -------------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~ 506 (651)
++.....++|+||..+||+||+++..|||||+-++++.|.|||||+||+
T Consensus 483 ~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRa 562 (731)
T KOG0339|consen 483 EIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRA 562 (731)
T ss_pred HHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccc
Confidence 2233456788999999999999999999999999999999999999999
Q ss_pred CCceEEEEeeeCCccc
Q psy8712 507 ERMGLAISLVSTVPEK 522 (651)
Q Consensus 507 g~~G~ai~lv~~~de~ 522 (651)
|..|.+++|+++.|..
T Consensus 563 g~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 563 GEKGVAYTLVTEKDAE 578 (731)
T ss_pred cccceeeEEechhhHH
Confidence 9999999999986543
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=409.96 Aligned_cols=313 Identities=31% Similarity=0.516 Sum_probs=271.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC--CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCC
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGK 79 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~ 79 (651)
++|+||+|.|+++++|..|+|..|+.||..|+|++|.. +++++++..|+|||.||.|.+|.+|..
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------------- 156 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------------- 156 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-------------
Confidence 68999999999999999999999999999999999986 799999999999999999999986633
Q ss_pred CccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCC
Q psy8712 80 AKAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGT 159 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~ 159 (651)
T Consensus 157 -------------------------------------------------------------------------------- 156 (477)
T KOG0332|consen 157 -------------------------------------------------------------------------------- 156 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccc
Q psy8712 160 DRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSF 239 (651)
Q Consensus 160 ~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~ 239 (651)
T Consensus 157 -------------------------------------------------------------------------------- 156 (477)
T KOG0332|consen 157 -------------------------------------------------------------------------------- 156 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEE
Q psy8712 240 NFGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIREL 319 (651)
Q Consensus 240 ~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~ 319 (651)
....|+++.|+||||||.|+.+++.+++++.. +++.
T Consensus 157 -----------------------------------------~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~---ita~ 192 (477)
T KOG0332|consen 157 -----------------------------------------DVVVPQCICLAPTRELAPQTGEVVEEMGKFTE---LTAS 192 (477)
T ss_pred -----------------------------------------cccCCCceeeCchHHHHHHHHHHHHHhcCcee---eeEE
Confidence 13357999999999999999999999999875 8888
Q ss_pred EEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCcceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCC
Q psy8712 320 LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHCRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGK 397 (651)
Q Consensus 320 ~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~ 397 (651)
..+.|....+... + ..+|+||||+.+.|++.. +.+.++.++.+|+||||.|++ +||.++-..|.+.+|.
T Consensus 193 yair~sk~~rG~~-i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~------ 263 (477)
T KOG0332|consen 193 YAIRGSKAKRGNK-L--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR------ 263 (477)
T ss_pred EEecCcccccCCc-c--hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC------
Confidence 8777763222111 1 258999999999999988 888999999999999999998 5899999999999996
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHH------------------------
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDET------------------------ 453 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------ 453 (651)
+.|+++||||+.. .+.+|+.++.++|..+.+..++...++|+|+++.|..++.+.
T Consensus 264 ~~QllLFSATf~e-~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~t 342 (477)
T KOG0332|consen 264 NQQLLLFSATFVE-KVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKAT 342 (477)
T ss_pred cceEEeeechhHH-HHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhh
Confidence 7999999999986 999999999999999999999999999999888887664211
Q ss_pred --HH--HH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCC------Chhhhhh
Q psy8712 454 --WG--RL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPD------DKANYVH 498 (651)
Q Consensus 454 --~~--~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~------s~~~Yih 498 (651)
|. .+ ++.....++..|++.+||||++.|++|||||+|. +++.|+|
T Consensus 343 a~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlH 422 (477)
T KOG0332|consen 343 AMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLH 422 (477)
T ss_pred HHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHH
Confidence 11 11 3334556677799999999999999999999995 7899999
Q ss_pred hcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHH
Q psy8712 499 RIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIE 578 (651)
Q Consensus 499 RiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie 578 (651)
|||||||+|+.|.+|.|+..+ +.+..|..||
T Consensus 423 RiGRtGRFGkkG~a~n~v~~~-------------------------------------------------~s~~~mn~iq 453 (477)
T KOG0332|consen 423 RIGRTGRFGKKGLAINLVDDK-------------------------------------------------DSMNIMNKIQ 453 (477)
T ss_pred HhcccccccccceEEEeeccc-------------------------------------------------CcHHHHHHHH
Confidence 999999999999999999874 5688899999
Q ss_pred HHhcCccccccc
Q psy8712 579 EHLNVTIQQVDD 590 (651)
Q Consensus 579 ~~~~~~i~~~~~ 590 (651)
+|++..+.++.+
T Consensus 454 ~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 454 KHFNMKIKRLDP 465 (477)
T ss_pred HHHhhcceecCC
Confidence 999999888765
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=452.00 Aligned_cols=298 Identities=31% Similarity=0.522 Sum_probs=261.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|...|+++.|++.++++||..|||||+.|||+|+.|+|||.+|.||||||++|+||++..+..+
T Consensus 365 ~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQ-------------- 430 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQ-------------- 430 (997)
T ss_pred chHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcC--------------
Confidence 579999999999999999999999999999999999999999999999999999999999433320
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 431 -------------------------------------------------------------------------------- 430 (997)
T KOG0334|consen 431 -------------------------------------------------------------------------------- 430 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 431 -------------------------------------------------------------------------------- 430 (997)
T KOG0334|consen 431 -------------------------------------------------------------------------------- 430 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
+......+|.+||++||||||.||++.++.|.+.++ ++++++
T Consensus 431 -----------------------------------r~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~---ir~v~v 472 (997)
T KOG0334|consen 431 -----------------------------------RPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG---IRVVCV 472 (997)
T ss_pred -----------------------------------CChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC---ceEEEe
Confidence 011124589999999999999999999999999876 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc---ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL---SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l---~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
+||....+|+..|++++.|+|+||||+.+++..+.. .+.++.+||+||||+|++++|.|++..|+++++. .
T Consensus 473 ygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrp------d 546 (997)
T KOG0334|consen 473 YGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRP------D 546 (997)
T ss_pred cCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcch------h
Confidence 999999999999999999999999999998865544 4566669999999999999999999999999987 6
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHH-----------------------
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWG----------------------- 455 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------------- 455 (651)
+|+++||||++. .+..++...++.|+.|.+.....+...+.|.+..|..+.++...
T Consensus 547 rQtvlfSatfpr-~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~ 625 (997)
T KOG0334|consen 547 RQTVLFSATFPR-SMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEK 625 (997)
T ss_pred hhhhhhhhhhhH-HHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchH
Confidence 899999999997 79999999999999999998888888898888777744321111
Q ss_pred ------HH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccc
Q psy8712 456 ------RL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVG 504 (651)
Q Consensus 456 ------~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~G 504 (651)
.| ++...+..+.+|+.++||+|+.++.+|||||+|..+++|+||+||||
T Consensus 626 ~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTg 705 (997)
T KOG0334|consen 626 ADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTG 705 (997)
T ss_pred HHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccc
Confidence 11 22334455667899999999999999999999999999999999999
Q ss_pred cCCCceEEEEeeeC
Q psy8712 505 RAERMGLAISLVST 518 (651)
Q Consensus 505 R~g~~G~ai~lv~~ 518 (651)
|+|++|.|++|+.+
T Consensus 706 ragrkg~AvtFi~p 719 (997)
T KOG0334|consen 706 RAGRKGAAVTFITP 719 (997)
T ss_pred cCCccceeEEEeCh
Confidence 99999999999998
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=422.26 Aligned_cols=316 Identities=30% Similarity=0.522 Sum_probs=269.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++||+++.+.++|.++||..|||+|.+|||.++.|+|++++||||||||++|++|+++.+..
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~--------------- 92 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY--------------- 92 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC---------------
Confidence 57999999999999999999999999999999999999999999999999999999999975421
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 93 -------------------------------------------------------------------------------- 92 (401)
T PTZ00424 93 -------------------------------------------------------------------------------- 92 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 93 -------------------------------------------------------------------------------- 92 (401)
T PTZ00424 93 -------------------------------------------------------------------------------- 92 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
..+++++|||+||++||.|+.+.+..++.... +.+..+
T Consensus 93 ---------------------------------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~---~~~~~~ 130 (401)
T PTZ00424 93 ---------------------------------------DLNACQALILAPTRELAQQIQKVVLALGDYLK---VRCHAC 130 (401)
T ss_pred ---------------------------------------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcC---ceEEEE
Confidence 01234799999999999999999999987654 788888
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
.|+.....+...+.++++|+|+||+++.+++.++.+.++++++|||||||++++++|...+..+++.++. +.|+
T Consensus 131 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~------~~~~ 204 (401)
T PTZ00424 131 VGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPP------DVQV 204 (401)
T ss_pred ECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCC------CcEE
Confidence 9999888888888889999999999999999988888999999999999999999999999999998876 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEE--------------------------EEeCcchHH---
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVV--------------------------VKIDPQQDE--- 452 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~--------------------------~~~~~~~~~--- 452 (651)
+++|||+++ .+..+...++.+|..+.+.........+.+.+ ++|++....
T Consensus 205 i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l 283 (401)
T PTZ00424 205 ALFSATMPN-EILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYL 283 (401)
T ss_pred EEEEecCCH-HHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHH
Confidence 999999997 88889999998887776665544444444443 344333210
Q ss_pred ------------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 453 ------------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 453 ------------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
.....++..+..++.+|+.+.+|||+|++++|||||+|.+..+|+||+||+||.|+
T Consensus 284 ~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 284 TKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred HHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 11111334456778899999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 509 MGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 509 ~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
.|.|++|+++ ++...++.+|++++..+...
T Consensus 364 ~G~~i~l~~~--------------------------------------------------~~~~~~~~~e~~~~~~~~~~ 393 (401)
T PTZ00424 364 KGVAINFVTP--------------------------------------------------DDIEQLKEIERHYNTQIEEM 393 (401)
T ss_pred CceEEEEEcH--------------------------------------------------HHHHHHHHHHHHHCCccccc
Confidence 9999999987 67888999999999888876
Q ss_pred ccc
Q psy8712 589 DDK 591 (651)
Q Consensus 589 ~~~ 591 (651)
++.
T Consensus 394 ~~~ 396 (401)
T PTZ00424 394 PME 396 (401)
T ss_pred Ccc
Confidence 543
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=382.85 Aligned_cols=318 Identities=29% Similarity=0.503 Sum_probs=274.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
|.|.++=|.|||++|+-+.||..|+.+|.++||...-|-||+++|.+|.|||..|.|..||.+-.
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep--------------- 106 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP--------------- 106 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC---------------
Confidence 67899999999999999999999999999999999999999999999999999999999985522
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 107 -------------------------------------------------------------------------------- 106 (387)
T KOG0329|consen 107 -------------------------------------------------------------------------------- 106 (387)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 107 -------------------------------------------------------------------------------- 106 (387)
T KOG0329|consen 107 -------------------------------------------------------------------------------- 106 (387)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
......+|++|.|||||-|+.+...+|++|++ ++++.+.
T Consensus 107 ---------------------------------------v~g~vsvlvmchtrelafqi~~ey~rfskymP--~vkvaVF 145 (387)
T KOG0329|consen 107 ---------------------------------------VDGQVSVLVMCHTRELAFQISKEYERFSKYMP--SVKVSVF 145 (387)
T ss_pred ---------------------------------------CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC--CceEEEE
Confidence 11233689999999999999999999999987 7999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||..++.....|++-|||+||||||++.+.+++.+++++++.+|+||||.|+++ ..+.++++|++..|. ..|
T Consensus 146 fGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~------~KQ 219 (387)
T KOG0329|consen 146 FGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPH------EKQ 219 (387)
T ss_pred EcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcc------cce
Confidence 9999999999999999999999999999999999999999999999999999975 678899999999988 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCC-ccCceEEEEEEeCcchH--HHHHHH----------------hhcc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA-VPETVHHVVVKIDPQQD--ETWGRL----------------RSHI 461 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~-~~~~i~~~~~~~~~~~~--~~~~~l----------------~~~~ 461 (651)
+++||||++. +++..++++|.+|..|.++.+.. +...+.|+|+...+.++ +....+ +-.+
T Consensus 220 vmmfsatlsk-eiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~f 298 (387)
T KOG0329|consen 220 VMMFSATLSK-EIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLSF 298 (387)
T ss_pred eeeeeeecch-hhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhhh
Confidence 9999999997 99999999999999888776542 34444454444433221 111111 0001
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcc
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQ 541 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~ 541 (651)
. ..+++|+.+.||+||..|+.|||||+|.+.++|+||+||+||+|.+|.+|+|++.+
T Consensus 299 ~-kr~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e---------------------- 355 (387)
T KOG0329|consen 299 Q-KRLVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE---------------------- 355 (387)
T ss_pred h-hhhHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcch----------------------
Confidence 1 22789999999999999999999999999999999999999999999999999984
Q ss_pred cccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccccccc
Q psy8712 542 LTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKL 592 (651)
Q Consensus 542 l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~ 592 (651)
++...|..+++++...|.++|..+
T Consensus 356 ---------------------------~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 356 ---------------------------NDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred ---------------------------hhHHHhchhhHhhhccHhhcCccc
Confidence 678889999999999999888653
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=410.24 Aligned_cols=230 Identities=28% Similarity=0.450 Sum_probs=204.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
...++++|++||||+|.|+.+++..++..+. ++++.+++||.+.......|++ ++|+||||||+.+++..+.++.++
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~--g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFT--GARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhccccc--CcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccc
Confidence 4467999999999999999999999998765 6999999999999888877754 789999999999999999999999
Q ss_pred cceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE
Q psy8712 362 CRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH 440 (651)
Q Consensus 362 l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~ 440 (651)
++++|+||||.|++ ..|.++|..|+..||+ .+|+++||||+|. .+.+++.++|++|..|.....+..+-.|+
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~------~rQv~a~SATYp~-nLdn~Lsk~mrdp~lVr~n~~d~~L~Gik 240 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQ------IRQVAAFSATYPR-NLDNLLSKFMRDPALVRFNADDVQLFGIK 240 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcch------hheeeEEeccCch-hHHHHHHHHhcccceeecccCCceeechh
Confidence 99999999999999 5699999999999999 6899999999996 99999999999999999999998888999
Q ss_pred EEEEEeCcch---------H----HHHH-----------------------------------------------HHhhc
Q psy8712 441 HVVVKIDPQQ---------D----ETWG-----------------------------------------------RLRSH 460 (651)
Q Consensus 441 ~~~~~~~~~~---------~----~~~~-----------------------------------------------~l~~~ 460 (651)
|+++.+++.. . ..+. .-.+.
T Consensus 241 Qyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~ 320 (980)
T KOG4284|consen 241 QYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA 320 (980)
T ss_pred heeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh
Confidence 9887766542 0 0000 00455
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
+.+.++++||..+||||-++|++|||.|.|.+.+.|.|||||+||+|..|.+++|+..+.+
T Consensus 321 f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 321 FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 6777888999999999999999999999999999999999999999999999999998654
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=382.71 Aligned_cols=231 Identities=27% Similarity=0.406 Sum_probs=175.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc-C----CcEEEECchhhHHHHh-CCCcc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS-G----VDIVVGTPGRMEDLIS-GGHLS 358 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~-~----~dIlV~TP~rL~~ll~-~~~l~ 358 (651)
.+||||+||++|+.|++++|.++....+ +.|+.+.|..+.+.....|.+ . +||||+|||||.|++. ...++
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tg---L~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~ 292 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTG---LAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFD 292 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCc---eEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcc
Confidence 4899999999999999999999987654 888888888888777777754 2 4999999999999998 57889
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCCcc----------------C------------CCCceeEEEEeeccCh
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKIT----------------S------------DGKRLQMIVCSATLHD 410 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~----------------~------------~~~~~Q~l~~SATl~~ 410 (651)
|++++++||||||+|++..|...+..++..+.... + .....+.++||||+..
T Consensus 293 Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsq 372 (620)
T KOG0350|consen 293 LKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQ 372 (620)
T ss_pred hhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhc
Confidence 99999999999999999877766555443332110 0 0123568899999986
Q ss_pred HHHHHHHHHhccCCeEEEccC----CCCccCceE-------------------------EEEEEeCcchHH--HH-----
Q psy8712 411 FDVKKMAERLMYFPTWVDLKG----EDAVPETVH-------------------------HVVVKIDPQQDE--TW----- 454 (651)
Q Consensus 411 ~~v~~l~~~~l~~p~~i~~~~----~~~~~~~i~-------------------------~~~~~~~~~~~~--~~----- 454 (651)
+-..+..--+..|....+.. .-..+..+. +.++++++.+.. +.
T Consensus 373 -dP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v 451 (620)
T KOG0350|consen 373 -DPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKV 451 (620)
T ss_pred -ChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHH
Confidence 67777776677775544442 223333333 444555443210 00
Q ss_pred ------------------------HHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce
Q psy8712 455 ------------------------GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG 510 (651)
Q Consensus 455 ------------------------~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G 510 (651)
..-+......+++|+|.++||||+.+|+.|||||+|.+...|+||+|||||||+.|
T Consensus 452 ~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G 531 (620)
T KOG0350|consen 452 EFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG 531 (620)
T ss_pred HhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc
Confidence 00134445678899999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCC
Q psy8712 511 LAISLVSTV 519 (651)
Q Consensus 511 ~ai~lv~~~ 519 (651)
.|++++..+
T Consensus 532 ~a~tll~~~ 540 (620)
T KOG0350|consen 532 YAITLLDKH 540 (620)
T ss_pred eEEEeeccc
Confidence 999999984
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=404.25 Aligned_cols=226 Identities=18% Similarity=0.265 Sum_probs=164.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC----CcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG----HLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~----~l~l~ 360 (651)
+++|||+||||||.|+.+.++.+. .. ++++..+.|+.+. .+...+.++++|||+||+++...+... ...++
T Consensus 82 ~~aL~l~PtraLa~q~~~~l~~l~-~~---~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~ 156 (742)
T TIGR03817 82 ATALYLAPTKALAADQLRAVRELT-LR---GVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLR 156 (742)
T ss_pred cEEEEEcChHHHHHHHHHHHHHhc-cC---CeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHh
Confidence 479999999999999999999987 22 4888777777664 445667778999999999987533221 12378
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccC-CCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccC--
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITS-DGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE-- 437 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~-~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~-- 437 (651)
++++|||||||.+.+ .|+.++..++++++.... .+.++|++++|||+++ . .++++.++..|..+ +........
T Consensus 157 ~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n-~-~~~~~~l~g~~~~~-i~~~~~~~~~~ 232 (742)
T TIGR03817 157 RLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTAD-P-AAAASRLIGAPVVA-VTEDGSPRGAR 232 (742)
T ss_pred cCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCC-H-HHHHHHHcCCCeEE-ECCCCCCcCce
Confidence 999999999999976 477777777666543211 1236899999999986 4 45677777766433 211110000
Q ss_pred -------------------------------------ceEEEEEEeCcchHHHHH-------------------------
Q psy8712 438 -------------------------------------TVHHVVVKIDPQQDETWG------------------------- 455 (651)
Q Consensus 438 -------------------------------------~i~~~~~~~~~~~~~~~~------------------------- 455 (651)
.-.+.++||++++.....
T Consensus 233 ~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg 312 (742)
T TIGR03817 233 TVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAG 312 (742)
T ss_pred EEEEecCCccccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecC
Confidence 002456666655421110
Q ss_pred ----------HHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 456 ----------RLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 456 ----------~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
..++..+..++++|+.+++||||++|++|||||+|.+.++|+||+|||||+|+.|.+++++..+
T Consensus 313 ~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 313 YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 1123345667889999999999999999999999999999999999999999999999998753
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=368.38 Aligned_cols=229 Identities=25% Similarity=0.360 Sum_probs=181.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHH-HHHHhccCCcEEEECchhhHHHHhCCC--cccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKD-QMSVLSSGVDIVVGTPGRMEDLISGGH--LSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~-q~~~L~~~~dIlV~TP~rL~~ll~~~~--l~l~ 360 (651)
+.+++|+.||||||.|++.++.++...- ..++++..+.......+ .........||+|+||.++..++..+. ++++
T Consensus 209 gl~a~Il~ptreLa~Qi~re~~k~~~~~-~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~ 287 (593)
T KOG0344|consen 209 GLRALILSPTRELAAQIYREMRKYSIDE-GTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLS 287 (593)
T ss_pred ceEEEEecchHHHHHHHHHHHHhcCCCC-CCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhh
Confidence 4589999999999999999999987221 11244444333322222 222223458999999999999998876 7899
Q ss_pred CcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCce
Q psy8712 361 HCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV 439 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i 439 (651)
.|.++|+||||++++. .|..++..|+..+... ...+-+||||++. .|++.++..+.++..|.+...+....+|
T Consensus 288 ~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~-----~i~~a~FSat~~~-~VEE~~~~i~~~~~~vivg~~~sa~~~V 361 (593)
T KOG0344|consen 288 KVEWLVVDEADLLFEPEFFVEQLADIYSACQSP-----DIRVALFSATISV-YVEEWAELIKSDLKRVIVGLRNSANETV 361 (593)
T ss_pred eeeeEeechHHhhhChhhHHHHHHHHHHHhcCc-----chhhhhhhccccH-HHHHHHHHhhccceeEEEecchhHhhhh
Confidence 9999999999999998 8999999999888662 6889999999996 9999999999999999988888777788
Q ss_pred EEEEEEeCcch----------------------------HHHHHHH--hhcc------------------------ccce
Q psy8712 440 HHVVVKIDPQQ----------------------------DETWGRL--RSHI------------------------QTDG 465 (651)
Q Consensus 440 ~~~~~~~~~~~----------------------------~~~~~~l--~~~~------------------------~~~~ 465 (651)
.|-.++|-.+. .+++..| ..++ +...
T Consensus 362 ~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iwv 441 (593)
T KOG0344|consen 362 DQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWV 441 (593)
T ss_pred hhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeE
Confidence 77666665443 1222222 2233 3444
Q ss_pred eeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 466 VHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 466 l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
+.||+.++||||+.+|+.|||||+|.+..+|+||+||+||+|+.|.||+|++++
T Consensus 442 LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~ 495 (593)
T KOG0344|consen 442 LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQ 495 (593)
T ss_pred EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccc
Confidence 557899999999999999999999999999999999999999999999999984
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=361.34 Aligned_cols=221 Identities=18% Similarity=0.240 Sum_probs=153.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc------cCCcEEEECchhhHH--HHhCC--
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS------SGVDIVVGTPGRMED--LISGG-- 355 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~------~~~dIlV~TP~rL~~--ll~~~-- 355 (651)
.+|||+|+++|+.++...+... ++++..+.++....++...+. ..++||++||++|.. .+.+.
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~-------GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~ 574 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA-------NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLE 574 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC-------CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHH
Confidence 5899999999998655554443 388899999998877765553 368999999999852 22211
Q ss_pred Cc-ccCCcceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc--CCeEE
Q psy8712 356 HL-SLTHCRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY--FPTWV 427 (651)
Q Consensus 356 ~l-~l~~l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~--~p~~i 427 (651)
.+ ....+.+|||||||++++|| |++++..+ ...+| +.|++++|||+++ .+.+.+...+. ++..+
T Consensus 575 ~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp-------~vPilALTATAT~-~V~eDI~~~L~l~~~~vf 646 (1195)
T PLN03137 575 NLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFP-------NIPVLALTATATA-SVKEDVVQALGLVNCVVF 646 (1195)
T ss_pred hhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCC-------CCCeEEEEecCCH-HHHHHHHHHcCCCCcEEe
Confidence 11 23458899999999999997 78877653 33344 4789999999997 55543333332 22211
Q ss_pred E-----------ccCCCC-c----cCce------EEEEEEeCcchH--HHHHHH-------------------------h
Q psy8712 428 D-----------LKGEDA-V----PETV------HHVVVKIDPQQD--ETWGRL-------------------------R 458 (651)
Q Consensus 428 ~-----------~~~~~~-~----~~~i------~~~~~~~~~~~~--~~~~~l-------------------------~ 458 (651)
. +..... . ..-+ ...+++|.++++ .....| +
T Consensus 647 r~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F 726 (1195)
T PLN03137 647 RQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQW 726 (1195)
T ss_pred ecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHH
Confidence 1 111100 0 0000 123455655432 111111 3
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
......+|++|+.+.+|||+|+|++|||||+|.++++|+||+|||||+|..|.|++|++..|.
T Consensus 727 ~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 727 SKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred hcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 334567788999999999999999999999999999999999999999999999999987554
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=342.14 Aligned_cols=224 Identities=15% Similarity=0.172 Sum_probs=155.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h-ccCCcEEEECchhhHHHH-hCCCc-cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L-SSGVDIVVGTPGRMEDLI-SGGHL-SL 359 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L-~~~~dIlV~TP~rL~~ll-~~~~l-~l 359 (651)
.+|||+||++|+.|+.+.++.++ +.+..+.++....++... + ...++|+++||+++.... ....+ ..
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~g-------i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~ 125 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKASG-------IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEER 125 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhc
Confidence 58999999999999998887653 777777777765543322 2 235899999999975322 11122 46
Q ss_pred CCcceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-ccCCeEEEcc---
Q psy8712 360 THCRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-MYFPTWVDLK--- 430 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l~~p~~i~~~--- 430 (651)
.++++|||||||++++|| |++++..+ ...+| +.|++++|||+++....++.+.+ +.+|..+...
T Consensus 126 ~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r 198 (470)
T TIGR00614 126 KGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP-------NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDR 198 (470)
T ss_pred CCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC-------CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCC
Confidence 889999999999999987 66765544 34444 37899999999973334444433 2334322211
Q ss_pred --------CCC-Cc----cC------ceEEEEEEeCcchHHH--HH-------------------------HHhhccccc
Q psy8712 431 --------GED-AV----PE------TVHHVVVKIDPQQDET--WG-------------------------RLRSHIQTD 464 (651)
Q Consensus 431 --------~~~-~~----~~------~i~~~~~~~~~~~~~~--~~-------------------------~l~~~~~~~ 464 (651)
... .. .. .-...+++|++.+... .. ..+......
T Consensus 199 ~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~ 278 (470)
T TIGR00614 199 PNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ 278 (470)
T ss_pred CCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc
Confidence 110 00 00 0112366666554211 11 113344567
Q ss_pred eeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 465 GVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 465 ~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
++++|+.+.+|||+|+|++||||++|.+.++|+||+||+||.|..|.|++|+++.|...
T Consensus 279 vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 279 VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 78899999999999999999999999999999999999999999999999999865543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=350.04 Aligned_cols=277 Identities=19% Similarity=0.196 Sum_probs=202.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++...++ +++..+.|+.+..++. ..+.. .+|||||||. ++ ++.+.++
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~---i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~ 572 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFP---VTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFK 572 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCC---cEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCcc
Confidence 4799999999999999999999877665 8999999887755443 33444 5899999994 22 3556789
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCcc----
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP---- 436 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~---- 436 (651)
++++|||||+|++ +......++.++. ++|+++||||+.+ ....++...+.++..|...+....+
T Consensus 573 ~L~llVIDEahrf-----gv~~~~~L~~~~~------~~~vL~~SATpip-rtl~~~l~g~~d~s~I~~~p~~R~~V~t~ 640 (926)
T TIGR00580 573 DLGLLIIDEEQRF-----GVKQKEKLKELRT------SVDVLTLSATPIP-RTLHMSMSGIRDLSIIATPPEDRLPVRTF 640 (926)
T ss_pred cCCEEEeeccccc-----chhHHHHHHhcCC------CCCEEEEecCCCH-HHHHHHHhcCCCcEEEecCCCCccceEEE
Confidence 9999999999984 3344555666654 5899999999876 5656666566666665544332111
Q ss_pred -----------------CceEEEEEEeCcchH--HHHHHH---------------------------hhccccceeeccc
Q psy8712 437 -----------------ETVHHVVVKIDPQQD--ETWGRL---------------------------RSHIQTDGVHARD 470 (651)
Q Consensus 437 -----------------~~i~~~~~~~~~~~~--~~~~~l---------------------------~~~~~~~~l~~td 470 (651)
..-.+.+++|+..+. .....+ +...+.+++++|+
T Consensus 641 v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~ 720 (926)
T TIGR00580 641 VMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT 720 (926)
T ss_pred EEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 001244555554321 111111 3334567788899
Q ss_pred cccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCC
Q psy8712 471 NARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNS 549 (651)
Q Consensus 471 ~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 549 (651)
.+++|||+|++++||+++.|. +...|+||+||+||.|+.|.||+|+.+.+.
T Consensus 721 iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~---------------------------- 772 (926)
T TIGR00580 721 IIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKA---------------------------- 772 (926)
T ss_pred hhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCccc----------------------------
Confidence 999999999999999999986 577999999999999999999999876311
Q ss_pred CcchhhccccccCCcccchhHHHHHHHHHHHh----cCccccccccccCCcccCCCceeecceecccC--ccchhhHhhh
Q psy8712 550 QVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHL----NVTIQQVDDKLEIPADEFDGKVVYGQKRVNMG--SSYENHVTQM 623 (651)
Q Consensus 550 ~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~----~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~ 623 (651)
+..+..+.|+.|++.. |..+++.+..++ .++...|.++.+.. ..|..+.+.+
T Consensus 773 ----------------l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~R------g~G~~lG~~QsG~~~~~~~~~~~~~l 830 (926)
T TIGR00580 773 ----------------LTEDAQKRLEAIQEFSELGAGFKIALHDLEIR------GAGNLLGEEQSGHIESIGFDLYMELL 830 (926)
T ss_pred ----------------CCHHHHHHHHHHHHhhcchhhHHHHHHHHHhc------CCcCCCCCcccCchhhccHHHHHHHH
Confidence 1114678899999875 688888887777 56666788887764 6677788889
Q ss_pred hHHHHHHH
Q psy8712 624 EPSVNKLS 631 (651)
Q Consensus 624 ~~~~~el~ 631 (651)
.+++.+|.
T Consensus 831 ~~a~~~~~ 838 (926)
T TIGR00580 831 EEAIEELK 838 (926)
T ss_pred HHHHHHHh
Confidence 99999887
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=353.41 Aligned_cols=232 Identities=18% Similarity=0.280 Sum_probs=160.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHH-------hhcc--CCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIK-------FKKF--ITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG 354 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~-------l~~~--~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~ 354 (651)
++++|||+|||+|+.|+++.+.. +... ...+++++.+.+|+.+...+...+.+.++|+|+||++|..++.+
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~ 163 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNS 163 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcC
Confidence 56899999999999999886553 2211 11125899999999998888888888999999999999888876
Q ss_pred CCc--ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC-----C--e
Q psy8712 355 GHL--SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF-----P--T 425 (651)
Q Consensus 355 ~~l--~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-----p--~ 425 (651)
..+ .++++++|||||||.+++..++..+..++.++.... +.+.|++++|||+++ ...+++.+... + .
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~--~~~va~~L~~~~~~~~~r~~ 239 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEP--LEEVAKFLVGYEDDGEPRDC 239 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCC--HHHHHHHhcCccccCCCCce
Confidence 654 478999999999999998766666665555544322 125899999999974 44555443221 1 1
Q ss_pred EE-E----------cc-C-CC---Ccc---------------CceEEEEEEeCcchHHH--HHHH---------------
Q psy8712 426 WV-D----------LK-G-ED---AVP---------------ETVHHVVVKIDPQQDET--WGRL--------------- 457 (651)
Q Consensus 426 ~i-~----------~~-~-~~---~~~---------------~~i~~~~~~~~~~~~~~--~~~l--------------- 457 (651)
.+ . +. . .+ ... ..-...+++|++..... ...+
T Consensus 240 ~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~ 319 (876)
T PRK13767 240 EIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGA 319 (876)
T ss_pred EEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceee
Confidence 11 0 00 0 00 000 01134677887654211 1111
Q ss_pred ----------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccC-CCceEEEEeeeCC
Q psy8712 458 ----------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRA-ERMGLAISLVSTV 519 (651)
Q Consensus 458 ----------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~-g~~G~ai~lv~~~ 519 (651)
++.....+++||+.+.+|||+|+|++||+|+.|.+..+|+||+||+||. |..+.++.+....
T Consensus 320 hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 2333456788899999999999999999999999999999999999987 4333444444433
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=351.12 Aligned_cols=274 Identities=18% Similarity=0.202 Sum_probs=203.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++....+ +++.++.|+.+..++...+. ..+|||||||+.+ +..+.++
T Consensus 650 ~qvlvLvPT~eLA~Q~~~~f~~~~~~~~---v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~ 721 (1147)
T PRK10689 650 KQVAVLVPTTLLAQQHYDNFRDRFANWP---VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWK 721 (1147)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhccCC---ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHh
Confidence 4899999999999999999998665544 88888999988777765543 3689999999633 2456688
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccC---
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE--- 437 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~--- 437 (651)
++++|||||+|++ ++. ....++.++. ++|+++||||+.+ .+..++...+.++..|........+-
T Consensus 722 ~L~lLVIDEahrf---G~~--~~e~lk~l~~------~~qvLl~SATpip-rtl~l~~~gl~d~~~I~~~p~~r~~v~~~ 789 (1147)
T PRK10689 722 DLGLLIVDEEHRF---GVR--HKERIKAMRA------DVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPARRLAVKTF 789 (1147)
T ss_pred hCCEEEEechhhc---chh--HHHHHHhcCC------CCcEEEEcCCCCH-HHHHHHHhhCCCcEEEecCCCCCCCceEE
Confidence 9999999999996 332 2445566665 6899999999887 77788888888887776544321110
Q ss_pred ------------------ceEEEEEEeCcchH--HHHHHH---------------------------hhccccceeeccc
Q psy8712 438 ------------------TVHHVVVKIDPQQD--ETWGRL---------------------------RSHIQTDGVHARD 470 (651)
Q Consensus 438 ------------------~i~~~~~~~~~~~~--~~~~~l---------------------------~~~~~~~~l~~td 470 (651)
.-.+++++++..+. .....+ +...+.++++||+
T Consensus 790 ~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd 869 (1147)
T PRK10689 790 VREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 (1147)
T ss_pred EEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc
Confidence 00245555554321 111111 3334567788999
Q ss_pred cccCCCCCCCCCEEE-----EeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccc
Q psy8712 471 NARPGIDISGLPFII-----NMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDV 545 (651)
Q Consensus 471 ~~~rGIDip~v~~VI-----n~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~ 545 (651)
.+++|||+|++++|| ||++| .|+||+|||||.|+.|.|++++....
T Consensus 870 IierGIDIP~v~~VIi~~ad~fgla----q~~Qr~GRvGR~g~~g~a~ll~~~~~------------------------- 920 (1147)
T PRK10689 870 IIETGIDIPTANTIIIERADHFGLA----QLHQLRGRVGRSHHQAYAWLLTPHPK------------------------- 920 (1147)
T ss_pred hhhcccccccCCEEEEecCCCCCHH----HHHHHhhccCCCCCceEEEEEeCCCc-------------------------
Confidence 999999999999999 56655 79999999999999999998886521
Q ss_pred cCCCCcchhhccccccCCcccchhHHHHHHHHHHHhc----CccccccccccCCcccCCCceeecceecccC--ccchhh
Q psy8712 546 KGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLN----VTIQQVDDKLEIPADEFDGKVVYGQKRVNMG--SSYENH 619 (651)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~----~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~ 619 (651)
.+.-+..+.|+.|+++.. ..|++.+.+++ +++...|.++.+.. ..|..+
T Consensus 921 -------------------~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~r------g~g~~~g~~q~g~~~~~g~~~y 975 (1147)
T PRK10689 921 -------------------AMTTDAQKRLEAIASLEDLGAGFALATHDLEIR------GAGELLGEEQSGQMETIGFSLY 975 (1147)
T ss_pred -------------------ccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhc------CCccCCCCccCCCccccCHHHH
Confidence 001145778889998754 77888887777 66777888888764 789999
Q ss_pred HhhhhHHHHHHHH
Q psy8712 620 VTQMEPSVNKLSK 632 (651)
Q Consensus 620 ~~~~~~~~~el~~ 632 (651)
.+.|.+++.+|.+
T Consensus 976 ~~~l~~~~~~~~~ 988 (1147)
T PRK10689 976 MELLENAVDALKA 988 (1147)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999984
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=335.12 Aligned_cols=221 Identities=15% Similarity=0.197 Sum_probs=154.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hc-cCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LS-SGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~-~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.+|||+|+++|+.|+.+.++.++ +.+.++.++.....+... +. ...+++++||+++........+...+
T Consensus 67 ~tlVisPl~sL~~dqv~~l~~~g-------i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~ 139 (607)
T PRK11057 67 LTLVVSPLISLMKDQVDQLLANG-------VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWN 139 (607)
T ss_pred CEEEEecHHHHHHHHHHHHHHcC-------CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCC
Confidence 47999999999999999888753 677777777766554432 22 35799999999986322112344567
Q ss_pred cceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHH-HHHHHh-ccCCeEEEccCCC-
Q psy8712 362 CRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVK-KMAERL-MYFPTWVDLKGED- 433 (651)
Q Consensus 362 l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~-~l~~~~-l~~p~~i~~~~~~- 433 (651)
+++|||||||++++|| |++++..+ ...+| +.|++++|||+++ .+. ++...+ +.+|.........
T Consensus 140 l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-------~~~~v~lTAT~~~-~~~~di~~~l~l~~~~~~~~~~~r~ 211 (607)
T PRK11057 140 PALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------TLPFMALTATADD-TTRQDIVRLLGLNDPLIQISSFDRP 211 (607)
T ss_pred CCEEEEeCccccccccCcccHHHHHHHHHHHhCC-------CCcEEEEecCCCh-hHHHHHHHHhCCCCeEEEECCCCCC
Confidence 9999999999999986 66665443 44444 3799999999997 444 344433 3344322111000
Q ss_pred ----------Ccc---------CceEEEEEEeCcchHHH--HHHH-------------------------hhccccceee
Q psy8712 434 ----------AVP---------ETVHHVVVKIDPQQDET--WGRL-------------------------RSHIQTDGVH 467 (651)
Q Consensus 434 ----------~~~---------~~i~~~~~~~~~~~~~~--~~~l-------------------------~~~~~~~~l~ 467 (651)
... ..-...+++|++.+... ...+ +......+++
T Consensus 212 nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLV 291 (607)
T PRK11057 212 NIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVV 291 (607)
T ss_pred cceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEE
Confidence 000 00123466666654221 1111 2334567788
Q ss_pred ccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 468 ~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
+|+.+.+|||+|+|++|||||+|.+.++|+||+|||||.|..|.|++|+++.|.
T Consensus 292 aT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 292 ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred EechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 999999999999999999999999999999999999999999999999998653
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=344.43 Aligned_cols=223 Identities=20% Similarity=0.296 Sum_probs=162.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++||.|+++.++.+... ++++..++|+...... . ...+||+|+||+++..+++++...++++++|
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~~----g~~v~~~tGd~~~~~~--~-l~~~~IiV~Tpek~~~llr~~~~~l~~v~lv 141 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEEL----GVRVGISTGDYDSRDE--W-LGDNDIIVATSEKVDSLLRNGAPWLDDITCV 141 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhcC----CCEEEEEeCCcCcccc--c-cCCCCEEEECHHHHHHHHhcChhhhhhcCEE
Confidence 6999999999999999999987542 4888899998764432 1 2458999999999999998776668899999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc-------CCeEEE--c-------
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY-------FPTWVD--L------- 429 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~-------~p~~i~--~------- 429 (651)
||||+|.+.+.++++.++.++.++.... .+.|++++|||++ +..++++++-. .|..+. +
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~---~~~qii~lSATl~--n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~ 216 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLN---PDLQVVALSATIG--NADELADWLDAELVDSEWRPIDLREGVFYGGAIH 216 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcC---CCCcEEEEcccCC--CHHHHHHHhCCCcccCCCCCCCCeeeEecCCeec
Confidence 9999999998888888888877664321 1589999999997 45666665421 121111 0
Q ss_pred -cCCC-Cc---------------cCceEEEEEEeCcchHHH---------------------------------------
Q psy8712 430 -KGED-AV---------------PETVHHVVVKIDPQQDET--------------------------------------- 453 (651)
Q Consensus 430 -~~~~-~~---------------~~~i~~~~~~~~~~~~~~--------------------------------------- 453 (651)
.... .. ...-.+.+++|++++...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 296 (737)
T PRK02362 217 FDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSK 296 (737)
T ss_pred cccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccH
Confidence 0000 00 001135677777654211
Q ss_pred ------------------------HHHHhhccccceeeccccccCCCCCCCCCEEEE----eC-----CCCChhhhhhhc
Q psy8712 454 ------------------------WGRLRSHIQTDGVHARDNARPGIDISGLPFIIN----MT-----LPDDKANYVHRI 500 (651)
Q Consensus 454 ------------------------~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d-----lP~s~~~YihRi 500 (651)
.+..++.....++.+|+.+++|+|+|.+++||+ || .|.+..+|+||+
T Consensus 297 ~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~ 376 (737)
T PRK02362 297 DLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMA 376 (737)
T ss_pred HHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHh
Confidence 001123334566778999999999999999998 77 689999999999
Q ss_pred CccccCCCc--eEEEEeeeCCc
Q psy8712 501 GRVGRAERM--GLAISLVSTVP 520 (651)
Q Consensus 501 GR~GR~g~~--G~ai~lv~~~d 520 (651)
|||||.|.. |.|++++.+.+
T Consensus 377 GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 377 GRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred hcCCCCCCCCCceEEEEecCch
Confidence 999999875 99999987643
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=335.26 Aligned_cols=224 Identities=18% Similarity=0.217 Sum_probs=167.2
Q ss_pred CCeEEE-EeCCHHHHHHHHHHHHHhhccCC--------------------CCCeeEEEEeCCccHHHHHHHhccCCcEEE
Q psy8712 284 APQAII-IEPSRELAEQTFNQIIKFKKFIT--------------------DPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342 (651)
Q Consensus 284 ~p~aLI-L~PTreLa~Qi~~~~~~l~~~~~--------------------~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV 342 (651)
.|++|| ++||||||.|+++.++++++++. ...+++.+++||.+...|+..+..+++|||
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIV 140 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIV 140 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEE
Confidence 356676 55999999999999999998762 235999999999999999999999999999
Q ss_pred ECchhhHHHHhCCCcc----------------cCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 343 GTPGRMEDLISGGHLS----------------LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 343 ~TP~rL~~ll~~~~l~----------------l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
||+ |++.++.+. ++++++||||||| ++++|.+++..|++.+... +...++|+++|||
T Consensus 141 gT~----D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp-~~~rprQtLLFSA 213 (844)
T TIGR02621 141 GTV----DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP-PDFLPLRVVELTA 213 (844)
T ss_pred ECH----HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC-cccccceEEEEec
Confidence 995 666666552 7889999999999 6789999999999975210 0111379999999
Q ss_pred ccChHHHHHHHHHhccCCeEEEccCCCCccCceE---------------------------EEEEEeCcchHH--H----
Q psy8712 407 TLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH---------------------------HVVVKIDPQQDE--T---- 453 (651)
Q Consensus 407 Tl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~---------------------------~~~~~~~~~~~~--~---- 453 (651)
|++. ++.++...++.+|..+.+.......+++. +.+++|++.+.. .
T Consensus 214 T~p~-ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L 292 (844)
T TIGR02621 214 TSRT-DGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKL 292 (844)
T ss_pred CCCc-cHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHH
Confidence 9987 88888888887776555544333322222 345555554311 1
Q ss_pred -------------------------HHHHhh----cc------ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhh
Q psy8712 454 -------------------------WGRLRS----HI------QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVH 498 (651)
Q Consensus 454 -------------------------~~~l~~----~~------~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~Yih 498 (651)
+..++. +. ...++++|+.+++||||+. ++|||+..| .++|+|
T Consensus 293 ~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQ 369 (844)
T TIGR02621 293 PKEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQ 369 (844)
T ss_pred HhcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHH
Confidence 111111 10 1457899999999999986 899998877 699999
Q ss_pred hcCccccCCCc-eEEEEeeeC
Q psy8712 499 RIGRVGRAERM-GLAISLVST 518 (651)
Q Consensus 499 RiGR~GR~g~~-G~ai~lv~~ 518 (651)
|+||+||+|+. +.+++++..
T Consensus 370 RiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 370 RFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HhcccCCCCCCCCceEEEEee
Confidence 99999999985 445777754
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=331.33 Aligned_cols=222 Identities=17% Similarity=0.212 Sum_probs=155.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh----ccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL----SSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L----~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.+|||+|+++|+.|+.+.++.++ +.+..+.++.+..+....+ ....+|+++||+++........+...+
T Consensus 55 ~~lVisPl~sL~~dq~~~l~~~g-------i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~ 127 (591)
T TIGR01389 55 LTVVISPLISLMKDQVDQLRAAG-------VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIP 127 (591)
T ss_pred cEEEEcCCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCC
Confidence 47899999999999999888763 7778888887766544332 346899999999996533334455678
Q ss_pred cceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc--CCeEEEcc----
Q psy8712 362 CRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY--FPTWVDLK---- 430 (651)
Q Consensus 362 l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~--~p~~i~~~---- 430 (651)
+.+|||||||++++|| |++.+..+ ...+|. .+++++|||+++ .+.......+. ++..+...
T Consensus 128 l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~-------~~vi~lTAT~~~-~~~~~i~~~l~~~~~~~~~~~~~r~ 199 (591)
T TIGR01389 128 IALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQ-------VPRIALTATADA-ETRQDIRELLRLADANEFITSFDRP 199 (591)
T ss_pred CCEEEEeCCcccccccCccHHHHHHHHHHHHhCCC-------CCEEEEEeCCCH-HHHHHHHHHcCCCCCCeEecCCCCC
Confidence 9999999999999986 77766554 344544 469999999997 55443333332 33222110
Q ss_pred -------CCCCc----cC-----ceEEEEEEeCcchHH--HHHHH-------------------------hhccccceee
Q psy8712 431 -------GEDAV----PE-----TVHHVVVKIDPQQDE--TWGRL-------------------------RSHIQTDGVH 467 (651)
Q Consensus 431 -------~~~~~----~~-----~i~~~~~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~ 467 (651)
..... .+ .-...+++|++.+.. ....+ +......+++
T Consensus 200 nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlV 279 (591)
T TIGR01389 200 NLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMV 279 (591)
T ss_pred CcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 00000 00 002245666655421 11111 2223467788
Q ss_pred ccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccc
Q psy8712 468 ARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522 (651)
Q Consensus 468 ~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~ 522 (651)
+|+.+.+|||+|+|++|||||+|.+.++|+||+||+||.|..|.|++++++.|..
T Consensus 280 aT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 280 ATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred EechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 8999999999999999999999999999999999999999999999999876543
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=339.16 Aligned_cols=220 Identities=20% Similarity=0.297 Sum_probs=161.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|+|+|+++||.|+++.++.+.. + ++++..++|+.+...+. ...++|+|+||+++..+++.+...++++++|
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~~-~---g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lv 142 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWEK-L---GLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLV 142 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHhh-c---CCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEE
Confidence 799999999999999999988643 2 48999999987654332 2468999999999999988777778999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC-------CeEE----EccCC--
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF-------PTWV----DLKGE-- 432 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-------p~~i----~~~~~-- 432 (651)
|+||+|.+.+.+++..+..++.+++. +.|++++|||++ +..++++++-.. |..+ .....
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l~~------~~qiI~lSATl~--n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~ 214 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHMLG------RAQILGLSATVG--NAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLF 214 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhcCc------CCcEEEEEccCC--CHHHHHHHhCCccccCCCCCCcceeeEecCCeee
Confidence 99999999988899999999998875 689999999997 456666654211 1111 10000
Q ss_pred ---CCc-----------cC---ceEEEEEEeCcchHHHH-----------------------------------------
Q psy8712 433 ---DAV-----------PE---TVHHVVVKIDPQQDETW----------------------------------------- 454 (651)
Q Consensus 433 ---~~~-----------~~---~i~~~~~~~~~~~~~~~----------------------------------------- 454 (651)
... .+ .-.+.+++|++++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 294 (720)
T PRK00254 215 WEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKAL 294 (720)
T ss_pred ccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 000 00 11356777776542210
Q ss_pred -------------------HHHhhccccceeeccccccCCCCCCCCCEEEE-------eCCCC-ChhhhhhhcCccccCC
Q psy8712 455 -------------------GRLRSHIQTDGVHARDNARPGIDISGLPFIIN-------MTLPD-DKANYVHRIGRVGRAE 507 (651)
Q Consensus 455 -------------------~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn-------~dlP~-s~~~YihRiGR~GR~g 507 (651)
+..++.....+++||+.+++|+|+|.+++||+ ++.|. +..+|+||+|||||.|
T Consensus 295 ~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 295 RGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred hhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 00122334566778999999999999999994 66655 5679999999999965
Q ss_pred --CceEEEEeeeCCc
Q psy8712 508 --RMGLAISLVSTVP 520 (651)
Q Consensus 508 --~~G~ai~lv~~~d 520 (651)
..|.+++++.+++
T Consensus 375 ~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 375 YDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCceEEEEecCcc
Confidence 6799999987644
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=316.15 Aligned_cols=249 Identities=19% Similarity=0.194 Sum_probs=167.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++...++ +++.+++|+.+..+.. ..+.+ .++|+||||+.+.+ .+.++
T Consensus 311 ~q~lilaPT~~LA~Q~~~~l~~l~~~~~---i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~ 382 (681)
T PRK10917 311 YQAALMAPTEILAEQHYENLKKLLEPLG---IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFH 382 (681)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcC---cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhc
Confidence 4799999999999999999999987665 9999999999864433 44444 49999999987743 45688
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC--------
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE-------- 432 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~-------- 432 (651)
+++++||||+|++.. .....+..... +++++++|||..+ ....+......++..+...+.
T Consensus 383 ~l~lvVIDE~Hrfg~-----~qr~~l~~~~~------~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r~~i~~~ 450 (681)
T PRK10917 383 NLGLVIIDEQHRFGV-----EQRLALREKGE------NPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGRKPITTV 450 (681)
T ss_pred ccceEEEechhhhhH-----HHHHHHHhcCC------CCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCCCCcEEE
Confidence 999999999998632 22223333322 4799999999876 443333321112222211111
Q ss_pred ----CCc----------cCceEEEEEEeCcch----------HHHHHHH---------------------------hhcc
Q psy8712 433 ----DAV----------PETVHHVVVKIDPQQ----------DETWGRL---------------------------RSHI 461 (651)
Q Consensus 433 ----~~~----------~~~i~~~~~~~~~~~----------~~~~~~l---------------------------~~~~ 461 (651)
... ...-++.+++|+..+ ......+ +...
T Consensus 451 ~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g 530 (681)
T PRK10917 451 VIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG 530 (681)
T ss_pred EeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 000 011235556554211 0111111 3334
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCC-hhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCc
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDD-KANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNT 540 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s-~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~ 540 (651)
+.+++++|+.+++|||+|++++||+++.|.. ...|.||+||+||.|..|.|++++.....
T Consensus 531 ~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~------------------- 591 (681)
T PRK10917 531 EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLS------------------- 591 (681)
T ss_pred CCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCC-------------------
Confidence 5677888999999999999999999999984 56677799999999999999999863100
Q ss_pred ccccccCCCCcchhhccccccCCcccchhHHHHHHHHHH-HhcCccccccccccCCcccC
Q psy8712 541 QLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEE-HLNVTIQQVDDKLEIPADEF 599 (651)
Q Consensus 541 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~-~~~~~i~~~~~~~~~~~~~~ 599 (651)
.++.+.++.+++ .-+..|++.+..++-+.+.+
T Consensus 592 ---------------------------~~~~~rl~~~~~~~dgf~iae~dl~~rg~g~~~ 624 (681)
T PRK10917 592 ---------------------------ETARERLKIMRETNDGFVIAEKDLELRGPGELL 624 (681)
T ss_pred ---------------------------hhHHHHHHHHHHhcchHHHHHHhHhhCCCcccc
Confidence 035677777776 45677888887776544433
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=308.31 Aligned_cols=216 Identities=18% Similarity=0.228 Sum_probs=143.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH---HHHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ---MSVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q---~~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++...++ +++.+++|+....+. ...+.+ .++||||||+.+.+ .+.++
T Consensus 285 ~qvlilaPT~~LA~Q~~~~~~~l~~~~g---i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~ 356 (630)
T TIGR00643 285 YQVALMAPTEILAEQHYNSLRNLLAPLG---IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFK 356 (630)
T ss_pred CcEEEECCHHHHHHHHHHHHHHHhcccC---cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----ccccc
Confidence 4799999999999999999999887664 999999999886653 333433 58999999987753 35678
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-c-----------cCCeEEE
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-M-----------YFPTWVD 428 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l-----------~~p~~i~ 428 (651)
+++++||||+|++... .+ ..+....+. ..++|++++|||..+ ....+.... + +.|....
T Consensus 357 ~l~lvVIDEaH~fg~~-qr---~~l~~~~~~----~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r~~i~~~ 427 (630)
T TIGR00643 357 RLALVIIDEQHRFGVE-QR---KKLREKGQG----GFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGRKPITTV 427 (630)
T ss_pred ccceEEEechhhccHH-HH---HHHHHhccc----CCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCCCceEEE
Confidence 9999999999985321 11 222222221 014799999999766 333322211 0 1122111
Q ss_pred ccCCCCc----------cCceEEEEEEeCcch----------HHHHHHH---------------------------hhcc
Q psy8712 429 LKGEDAV----------PETVHHVVVKIDPQQ----------DETWGRL---------------------------RSHI 461 (651)
Q Consensus 429 ~~~~~~~----------~~~i~~~~~~~~~~~----------~~~~~~l---------------------------~~~~ 461 (651)
+...+.. ...-.+.+++|+..+ ...+..+ +...
T Consensus 428 ~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g 507 (630)
T TIGR00643 428 LIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG 507 (630)
T ss_pred EeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 1111100 011234444443211 0111111 3334
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeee
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVS 517 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~ 517 (651)
+.+++++|+.+++|||+|++++||+++.|. ....|.||+||+||.|+.|.|++++.
T Consensus 508 ~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 508 EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 567788899999999999999999999997 56677779999999999999999984
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=323.76 Aligned_cols=213 Identities=18% Similarity=0.188 Sum_probs=152.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCcc-----HHHHHHHhcc-CCcEEEECchhhHHHHhCCCcc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVN-----VKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~-----~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
+++|||+|||+||.|+++.++.++.... +.+..++|+.+ ...+...+.+ .+||+|+||++|.+++. .+.
T Consensus 124 ~~alIL~PTreLa~Qi~~~l~~l~~~~~---~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~ 198 (1176)
T PRK09401 124 KKSYIIFPTRLLVEQVVEKLEKFGEKVG---CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELP 198 (1176)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhhhcC---ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hcc
Confidence 4799999999999999999999998665 77777777654 2333444554 59999999999999876 456
Q ss_pred cCCcceEeeccchhhhh-----------ccch-HHHHHHHhcCCCccC------------------CCCceeEEEEeecc
Q psy8712 359 LTHCRFFVLDEADGLLK-----------QGYG-NLIDRMHKQIPKITS------------------DGKRLQMIVCSATL 408 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~-----------~gf~-~~i~~il~~lp~~~~------------------~~~~~Q~l~~SATl 408 (651)
..++++|||||||+|++ .||. +++..++..++.... .....|+++||||+
T Consensus 199 ~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~ 278 (1176)
T PRK09401 199 KKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATG 278 (1176)
T ss_pred ccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCC
Confidence 67799999999999996 6785 678888877764100 01157999999999
Q ss_pred ChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE----------------------eCcchH-----HHHHHH----
Q psy8712 409 HDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK----------------------IDPQQD-----ETWGRL---- 457 (651)
Q Consensus 409 ~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~----------------------~~~~~~-----~~~~~l---- 457 (651)
++..+.. .+++++..+.+........+|.|.++. |+.... .....+
T Consensus 279 ~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~g 355 (1176)
T PRK09401 279 RPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLG 355 (1176)
T ss_pred CccchHH---HHhhccceEEecCcccccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCC
Confidence 8632332 233444445555444444555554444 333211 111111
Q ss_pred ----------------hhccccceeec----cccccCCCCCCC-CCEEEEeCCCC------ChhhhhhhcCcccc
Q psy8712 458 ----------------RSHIQTDGVHA----RDNARPGIDISG-LPFIINMTLPD------DKANYVHRIGRVGR 505 (651)
Q Consensus 458 ----------------~~~~~~~~l~~----td~~~rGIDip~-v~~VIn~dlP~------s~~~YihRiGR~GR 505 (651)
+...+.+++++ ||.++||||+|+ |++|||||+|. ..+.|.||+||+-+
T Consensus 356 i~v~~~hg~l~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 356 INAELAISGFERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CcEEEEeCcHHHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 33445667778 689999999999 89999999998 77899999999963
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=315.95 Aligned_cols=222 Identities=16% Similarity=0.246 Sum_probs=154.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|+|+|+++||.|+++.++++.. + ++++...+|+....... .+.+||+|+||+++..++.+....++++++|
T Consensus 67 k~v~i~P~raLa~q~~~~~~~l~~-~---g~~v~~~~G~~~~~~~~---~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lv 139 (674)
T PRK01172 67 KSIYIVPLRSLAMEKYEELSRLRS-L---GMRVKISIGDYDDPPDF---IKRYDVVILTSEKADSLIHHDPYIINDVGLI 139 (674)
T ss_pred cEEEEechHHHHHHHHHHHHHHhh-c---CCeEEEEeCCCCCChhh---hccCCEEEECHHHHHHHHhCChhHHhhcCEE
Confidence 689999999999999999988643 2 47888888876643321 2468999999999999888777678999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc---------CCeEEEccC-----
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY---------FPTWVDLKG----- 431 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~---------~p~~i~~~~----- 431 (651)
||||||++.+.++++.++.++..+.... .+.|++++|||++ +..++++++-. .|..+.+..
T Consensus 140 ViDEaH~l~d~~rg~~le~ll~~~~~~~---~~~riI~lSATl~--n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~ 214 (674)
T PRK01172 140 VADEIHIIGDEDRGPTLETVLSSARYVN---PDARILALSATVS--NANELAQWLNASLIKSNFRPVPLKLGILYRKRLI 214 (674)
T ss_pred EEecchhccCCCccHHHHHHHHHHHhcC---cCCcEEEEeCccC--CHHHHHHHhCCCccCCCCCCCCeEEEEEecCeee
Confidence 9999999998888888887776554321 1589999999997 45667665421 121111110
Q ss_pred ---CCCc-----------cCceEEEEEEeCcchHHH--------------------------------------------
Q psy8712 432 ---EDAV-----------PETVHHVVVKIDPQQDET-------------------------------------------- 453 (651)
Q Consensus 432 ---~~~~-----------~~~i~~~~~~~~~~~~~~-------------------------------------------- 453 (651)
.... ...-.+.+++|++++...
T Consensus 215 ~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag 294 (674)
T PRK01172 215 LDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG 294 (674)
T ss_pred ecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCC
Confidence 0000 011235677777654211
Q ss_pred --------HHHHhhccccceeeccccccCCCCCCCCCEEEEeCC---------CCChhhhhhhcCccccCCC--ceEEEE
Q psy8712 454 --------WGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTL---------PDDKANYVHRIGRVGRAER--MGLAIS 514 (651)
Q Consensus 454 --------~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl---------P~s~~~YihRiGR~GR~g~--~G~ai~ 514 (651)
....++.....++.+|+.+++|+|+|+. .||++|. |-+..+|.||+|||||.|. .|.+++
T Consensus 295 l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i 373 (674)
T PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYI 373 (674)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEE
Confidence 0111233455677889999999999985 5555554 4578899999999999984 677888
Q ss_pred eeeCCc
Q psy8712 515 LVSTVP 520 (651)
Q Consensus 515 lv~~~d 520 (651)
++...+
T Consensus 374 ~~~~~~ 379 (674)
T PRK01172 374 YAASPA 379 (674)
T ss_pred EecCcc
Confidence 876544
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=305.08 Aligned_cols=228 Identities=19% Similarity=0.264 Sum_probs=171.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc--ccC
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL--SLT 360 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l--~l~ 360 (651)
++..+|+|+|.|+|.+.+...++..+..++ +.+.+-.|+++..+..+.+++.|||||+|||.|.-++....+ .|+
T Consensus 72 ~~i~~lYIsPLkALn~Di~~rL~~~~~~~G---~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~ 148 (814)
T COG1201 72 DGIYALYISPLKALNNDIRRRLEEPLRELG---IEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLR 148 (814)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHHHHHcC---CccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhc
Confidence 356899999999999999999999999876 888999999999999999999999999999999888877655 489
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC--CeEEEccCCCCcc--
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF--PTWVDLKGEDAVP-- 436 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~--p~~i~~~~~~~~~-- 436 (651)
+++++||||.|.+.+...+.++.--+.+|..... +.|.|++|||.. +....++.+... +..|.........
T Consensus 149 ~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~---~~qRIGLSATV~--~~~~varfL~g~~~~~~Iv~~~~~k~~~i 223 (814)
T COG1201 149 DVRYVIVDEIHALAESKRGVQLALSLERLRELAG---DFQRIGLSATVG--PPEEVAKFLVGFGDPCEIVDVSAAKKLEI 223 (814)
T ss_pred CCcEEEeehhhhhhccccchhhhhhHHHHHhhCc---ccEEEeehhccC--CHHHHHHHhcCCCCceEEEEcccCCcceE
Confidence 9999999999999987777776666666554322 589999999997 456666665543 3222211111000
Q ss_pred ------------------------C---ceEEEEEEeCcchHH--HHHHH--------------------------hhcc
Q psy8712 437 ------------------------E---TVHHVVVKIDPQQDE--TWGRL--------------------------RSHI 461 (651)
Q Consensus 437 ------------------------~---~i~~~~~~~~~~~~~--~~~~l--------------------------~~~~ 461 (651)
+ .-.-.++|++++... ....+ ++..
T Consensus 224 ~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G 303 (814)
T COG1201 224 KVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG 303 (814)
T ss_pred EEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC
Confidence 0 001245666665421 11111 3334
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccC-CCceEEEEeeeC
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRA-ERMGLAISLVST 518 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~-g~~G~ai~lv~~ 518 (651)
...+++||..+..|||+.+|+.||+|.-|.++..++||+||+|+. +....++.+...
T Consensus 304 ~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 304 ELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 467788899999999999999999999999999999999999964 555677766665
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=322.95 Aligned_cols=227 Identities=17% Similarity=0.126 Sum_probs=157.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH---Hhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS---VLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~---~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
+++|||+||++||.|+.+.++.++..+. .++++..++|+.+..++.. .+.+ .+||||+||++|.+.+... ...
T Consensus 123 ~~aLVl~PTreLa~Qi~~~l~~l~~~~~-~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~ 199 (1638)
T PRK14701 123 KKCYIILPTTLLVKQTVEKIESFCEKAN-LDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHL 199 (1638)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhcC-CceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhC
Confidence 4799999999999999999999987652 2478888999998776643 3444 4999999999998876542 227
Q ss_pred CcceEeeccchhhhh-----------ccchHHHHH----HHhcCCC---------------cc-CCCCcee-EEEEeecc
Q psy8712 361 HCRFFVLDEADGLLK-----------QGYGNLIDR----MHKQIPK---------------IT-SDGKRLQ-MIVCSATL 408 (651)
Q Consensus 361 ~l~~lViDEaD~ll~-----------~gf~~~i~~----il~~lp~---------------~~-~~~~~~Q-~l~~SATl 408 (651)
++++|||||||+|++ +||.+++.. +++..+. .. .-....| ++++|||+
T Consensus 200 ~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~ 279 (1638)
T PRK14701 200 KFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATG 279 (1638)
T ss_pred CCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCC
Confidence 899999999999986 488888864 4321000 00 0011344 67899999
Q ss_pred ChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeC-----------------------cch-----HHHHHHH---
Q psy8712 409 HDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID-----------------------PQQ-----DETWGRL--- 457 (651)
Q Consensus 409 ~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~-----------------------~~~-----~~~~~~l--- 457 (651)
++. .....+++++..+.+........++.|.++.++ .++ +.....|
T Consensus 280 ~~r---~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~ 356 (1638)
T PRK14701 280 KAK---GDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLED 356 (1638)
T ss_pred Cch---hHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHC
Confidence 852 112234466666776666555566666554433 222 1112222
Q ss_pred -----------------hhccccceeecc----ccccCCCCCCC-CCEEEEeCCCC---Chhhhhhhc------------
Q psy8712 458 -----------------RSHIQTDGVHAR----DNARPGIDISG-LPFIINMTLPD---DKANYVHRI------------ 500 (651)
Q Consensus 458 -----------------~~~~~~~~l~~t----d~~~rGIDip~-v~~VIn~dlP~---s~~~YihRi------------ 500 (651)
+...+.+++++| +.++||||+|+ |++|||||+|. +.+.|.|..
T Consensus 357 Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~ 436 (1638)
T PRK14701 357 GFKIELVSAKNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILK 436 (1638)
T ss_pred CCeEEEecchHHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHH
Confidence 233455667778 47889999999 99999999999 999888877
Q ss_pred -CccccCCCceEEEEeee
Q psy8712 501 -GRVGRAERMGLAISLVS 517 (651)
Q Consensus 501 -GR~GR~g~~G~ai~lv~ 517 (651)
||+||.|..+.++..+.
T Consensus 437 ~~~a~~~g~~~~~~~~~~ 454 (1638)
T PRK14701 437 IEEELKEGIPIEGVLDVF 454 (1638)
T ss_pred hhhhcccCCcchhHHHhH
Confidence 99999988777764433
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=298.41 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=156.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
.++++|++||||||.|+.+.+.....+..-.++.+.+.+||.+. .+.....+..+|+|+|++.. ...+++++
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~ 293 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYG 293 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCC
Confidence 34899999999999999999987766543335778889999873 32233334789999997521 12478999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE---
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH--- 440 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~--- 440 (651)
+|||||||.+...+ +.+..+++.++.. .+|+++||||++. ++..+ ..++.+|..+.+.+.. ...|+
T Consensus 294 ~VVIDEaHEr~~~~--DllL~llk~~~~~-----~rq~ILmSATl~~-dv~~l-~~~~~~p~~I~I~grt--~~pV~~~y 362 (675)
T PHA02653 294 TVIIDEVHEHDQIG--DIIIAVARKHIDK-----IRSLFLMTATLED-DRDRI-KEFFPNPAFVHIPGGT--LFPISEVY 362 (675)
T ss_pred EEEccccccCccch--hHHHHHHHHhhhh-----cCEEEEEccCCcH-hHHHH-HHHhcCCcEEEeCCCc--CCCeEEEE
Confidence 99999999987764 4566666554431 3599999999986 77777 5788888877765431 11122
Q ss_pred ----------------------------------EEEEEeCcchHH--H--------------------------HHHHh
Q psy8712 441 ----------------------------------HVVVKIDPQQDE--T--------------------------WGRLR 458 (651)
Q Consensus 441 ----------------------------------~~~~~~~~~~~~--~--------------------------~~~l~ 458 (651)
+.++|++...+. . ...++
T Consensus 363 i~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff 442 (675)
T PHA02653 363 VKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVY 442 (675)
T ss_pred eecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHh
Confidence 345555543210 0 01111
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeC---CCC---------ChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMT---LPD---------DKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~d---lP~---------s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
+..+..++.+||.++||||||+|++||++| .|. |.++|+||+|||||. +.|.|+.|++++
T Consensus 443 ~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~ 514 (675)
T PHA02653 443 SSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLD 514 (675)
T ss_pred ccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHH
Confidence 233457788999999999999999999999 675 888999999999999 899999999874
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=286.13 Aligned_cols=227 Identities=17% Similarity=0.181 Sum_probs=159.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hcc-CCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LSS-GVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~~-~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
-+|||+|...|+..+.+.++..+ +++.++.+..+.++.... +.. ..++|.-+||++..-.....+.--.
T Consensus 59 ~TLVVSPLiSLM~DQV~~l~~~G-------i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~ 131 (590)
T COG0514 59 LTLVVSPLISLMKDQVDQLEAAG-------IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLP 131 (590)
T ss_pred CEEEECchHHHHHHHHHHHHHcC-------ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCC
Confidence 47999999999999999988776 788888888665555433 333 4899999999996533223333567
Q ss_pred cceEeeccchhhhhcc--chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc-CCeEEEcc--CCCC--
Q psy8712 362 CRFFVLDEADGLLKQG--YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY-FPTWVDLK--GEDA-- 434 (651)
Q Consensus 362 l~~lViDEaD~ll~~g--f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~-~p~~i~~~--~~~~-- 434 (651)
+.++|||||||+++|| |+++..++-....... +++++++|||.++....++.+.+.- ++..+... +.+.
T Consensus 132 i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~----~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~ 207 (590)
T COG0514 132 ISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP----NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLAL 207 (590)
T ss_pred CceEEechHHHHhhcCCccCHhHHHHHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhh
Confidence 8899999999999997 9998776644332211 4799999999998545555555432 33222111 1110
Q ss_pred --------------c----cCceEEEEEEeCcch---------------------------HHHHHHHhhccccceeecc
Q psy8712 435 --------------V----PETVHHVVVKIDPQQ---------------------------DETWGRLRSHIQTDGVHAR 469 (651)
Q Consensus 435 --------------~----~~~i~~~~~~~~~~~---------------------------~~~~~~l~~~~~~~~l~~t 469 (651)
. ...-.--+++|.+++ ++.....+..-+..+++||
T Consensus 208 ~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT 287 (590)
T COG0514 208 KVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT 287 (590)
T ss_pred hhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 0 000000234444433 1122222444566778889
Q ss_pred ccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 470 d~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
..+..|||.|||++|||||+|.|.++|+|.+|||||+|....|++|+++.|...
T Consensus 288 ~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~ 341 (590)
T COG0514 288 NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRW 341 (590)
T ss_pred ccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHH
Confidence 999999999999999999999999999999999999999999999999977553
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=253.07 Aligned_cols=202 Identities=38% Similarity=0.656 Sum_probs=182.3
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccc
Q psy8712 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQ 83 (651)
Q Consensus 4 f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~ 83 (651)
|+++++++.+.+.|.++|+..|+++|+++++.++.|+|++++||||+|||++|++|+++.+....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---------------
Confidence 88999999999999999999999999999999999999999999999999999999999776510
Q ss_pred cccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCCCC
Q psy8712 84 VISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDRFG 163 (651)
Q Consensus 84 ~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 163 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (203)
T cd00268 66 -------------------------------------------------------------------------------- 65 (203)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccccCC
Q psy8712 164 FGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGA 243 (651)
Q Consensus 164 ~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~ 243 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (203)
T cd00268 66 -------------------------------------------------------------------------------- 65 (203)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeC
Q psy8712 244 TPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIG 323 (651)
Q Consensus 244 ~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~G 323 (651)
..+++++||++||++|+.|+.+.++.+....+ +++..+.|
T Consensus 66 -------------------------------------~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~---~~~~~~~~ 105 (203)
T cd00268 66 -------------------------------------KKDGPQALILAPTRELALQIAEVARKLGKHTN---LKVVVIYG 105 (203)
T ss_pred -------------------------------------ccCCceEEEEcCCHHHHHHHHHHHHHHhccCC---ceEEEEEC
Confidence 01346899999999999999999999886543 88899999
Q ss_pred CccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEE
Q psy8712 324 GVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403 (651)
Q Consensus 324 g~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~ 403 (651)
+.+.......+..+++|+|+||+++.+++.++...+++++++|+||+|.+.+.++...+..+++.++. ..|+++
T Consensus 106 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~------~~~~~~ 179 (203)
T cd00268 106 GTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK------DRQTLL 179 (203)
T ss_pred CCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc------ccEEEE
Confidence 99887777777778999999999999999988888999999999999999988899999999998876 689999
Q ss_pred EeeccChHHHHHHHHHhccCCeEE
Q psy8712 404 CSATLHDFDVKKMAERLMYFPTWV 427 (651)
Q Consensus 404 ~SATl~~~~v~~l~~~~l~~p~~i 427 (651)
+|||+++ .+.++...++.+|..|
T Consensus 180 ~SAT~~~-~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 180 FSATMPK-EVRDLARKFLRNPVRI 202 (203)
T ss_pred EeccCCH-HHHHHHHHHCCCCEEe
Confidence 9999997 9999999999988765
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=309.02 Aligned_cols=226 Identities=18% Similarity=0.200 Sum_probs=157.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhcc-------C--CCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKF-------I--TDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG 354 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~-------~--~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~ 354 (651)
++++|||+|||+|+.|+++.++..... + ..+++++...+|+.+..++.+.+++.+||||+||++|..++.+
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts 116 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS 116 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh
Confidence 468999999999999999988752211 1 1235999999999999998888888999999999999998765
Q ss_pred CC-cccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc-CCeEEE----
Q psy8712 355 GH-LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY-FPTWVD---- 428 (651)
Q Consensus 355 ~~-l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~-~p~~i~---- 428 (651)
+. ..++++++|||||+|.|++..++.++..++.++....+ .+.|+|++|||+++ ..++++.+.. +|..|.
T Consensus 117 k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~--~~~QrIgLSATI~n--~eevA~~L~g~~pv~Iv~~~~ 192 (1490)
T PRK09751 117 RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH--TSAQRIGLSATVRS--ASDVAAFLGGDRPVTVVNPPA 192 (1490)
T ss_pred hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC--CCCeEEEEEeeCCC--HHHHHHHhcCCCCEEEECCCC
Confidence 43 46899999999999999976555544444333322111 16899999999984 5666665532 233221
Q ss_pred ---------ccCCC--Cc---------------c---------------CceEEEEEEeCcchHHH--HHHH--------
Q psy8712 429 ---------LKGED--AV---------------P---------------ETVHHVVVKIDPQQDET--WGRL-------- 457 (651)
Q Consensus 429 ---------~~~~~--~~---------------~---------------~~i~~~~~~~~~~~~~~--~~~l-------- 457 (651)
+...+ .. . ..-.+.++||+++.... ...+
T Consensus 193 ~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~ 272 (1490)
T PRK09751 193 MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARL 272 (1490)
T ss_pred CcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhc
Confidence 11000 00 0 01134577777764211 1111
Q ss_pred --------------------------------------------------hhccccceeeccccccCCCCCCCCCEEEEe
Q psy8712 458 --------------------------------------------------RSHIQTDGVHARDNARPGIDISGLPFIINM 487 (651)
Q Consensus 458 --------------------------------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~ 487 (651)
++.....++++|+.+.+||||++|++||||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~ 352 (1490)
T PRK09751 273 QRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQV 352 (1490)
T ss_pred cccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEe
Confidence 122234556678999999999999999999
Q ss_pred CCCCChhhhhhhcCccccC-CCceEEE
Q psy8712 488 TLPDDKANYVHRIGRVGRA-ERMGLAI 513 (651)
Q Consensus 488 dlP~s~~~YihRiGR~GR~-g~~G~ai 513 (651)
+.|.++.+|+||+||+||. |..+.++
T Consensus 353 gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 353 ATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred CCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 9999999999999999997 3334445
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=275.07 Aligned_cols=231 Identities=17% Similarity=0.138 Sum_probs=156.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC-------
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------- 356 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------- 356 (651)
++++||+||++||.|.++++..+..+++ +++.+++||.+.. .+.+..++||+|||...+ .|+++.+.
T Consensus 145 ~~v~VvTptreLA~qdae~~~~l~~~lG---lsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~ 219 (656)
T PRK12898 145 LPVHVITVNDYLAERDAELMRPLYEALG---LTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRAS 219 (656)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHhhcC---CEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhcccccccccccc
Confidence 4799999999999999999999998886 9999999998754 333445799999999998 56665432
Q ss_pred ------------------cccCCcceEeeccchhhh-hc-----------------cchHHHHHHHhcCCC---------
Q psy8712 357 ------------------LSLTHCRFFVLDEADGLL-KQ-----------------GYGNLIDRMHKQIPK--------- 391 (651)
Q Consensus 357 ------------------l~l~~l~~lViDEaD~ll-~~-----------------gf~~~i~~il~~lp~--------- 391 (651)
.....+.+.||||+|.++ |. .+...+..+.+.+..
T Consensus 220 ~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~ 299 (656)
T PRK12898 220 DARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAA 299 (656)
T ss_pred chhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECC
Confidence 123567899999999764 10 011111111111110
Q ss_pred ------------------------ccC---------------------------CC------------------------
Q psy8712 392 ------------------------ITS---------------------------DG------------------------ 396 (651)
Q Consensus 392 ------------------------~~~---------------------------~~------------------------ 396 (651)
+.. ++
T Consensus 300 ~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQ 379 (656)
T PRK12898 300 EKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQ 379 (656)
T ss_pred CCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHH
Confidence 000 00
Q ss_pred -----------Cc----------------eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE---------
Q psy8712 397 -----------KR----------------LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH--------- 440 (651)
Q Consensus 397 -----------~~----------------~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~--------- 440 (651)
.. ..+.+||||++. ...++.+.+..++..|....... ....
T Consensus 380 aieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~-~~~El~~~y~l~vv~IPt~kp~~--r~~~~~~v~~t~~ 456 (656)
T PRK12898 380 MIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTARE-VAGELWSVYGLPVVRIPTNRPSQ--RRHLPDEVFLTAA 456 (656)
T ss_pred HHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChH-HHHHHHHHHCCCeEEeCCCCCcc--ceecCCEEEeCHH
Confidence 00 135668888886 67788887777766655443321 1111
Q ss_pred ------------------EEEEEeCcchHHH--HHHH-----------------------hhccccceeeccccccCCCC
Q psy8712 441 ------------------HVVVKIDPQQDET--WGRL-----------------------RSHIQTDGVHARDNARPGID 477 (651)
Q Consensus 441 ------------------~~~~~~~~~~~~~--~~~l-----------------------~~~~~~~~l~~td~~~rGID 477 (651)
..++++++.+... ...| +.+.+..++++||.+.||+|
T Consensus 457 ~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATdmAgRGtD 536 (656)
T PRK12898 457 AKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTD 536 (656)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEccchhcccC
Confidence 2344444433211 1111 22233456778999999999
Q ss_pred CC---CCC-----EEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 478 IS---GLP-----FIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 478 ip---~v~-----~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
|+ +|. +|||||+|.+...|+||+|||||.|+.|.+++|++.+|+..
T Consensus 537 I~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 537 IKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred cCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 99 676 99999999999999999999999999999999999866543
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=291.07 Aligned_cols=197 Identities=20% Similarity=0.234 Sum_probs=130.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
+++|||+|||+||.|+++.++.+....+-....+.+++||.+..++. ..+.+ +++|||+||++|.+.+.. +..
T Consensus 122 ~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~- 198 (1171)
T TIGR01054 122 KRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP- 198 (1171)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-
Confidence 47999999999999999999999876541112234567888876553 33444 599999999999887764 222
Q ss_pred CcceEeeccchhhhh-----------ccchHH-HHHHHhc----------------------CCCccCCCCceeEEEEee
Q psy8712 361 HCRFFVLDEADGLLK-----------QGYGNL-IDRMHKQ----------------------IPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 361 ~l~~lViDEaD~ll~-----------~gf~~~-i~~il~~----------------------lp~~~~~~~~~Q~l~~SA 406 (651)
+++++||||||+|++ +||.++ +..++.. +|. ....++++|||
T Consensus 199 ~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~q~~li~~SA 274 (1171)
T TIGR01054 199 KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPG----KKRGCLIVSSA 274 (1171)
T ss_pred CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhh----ccCcEEEEEeC
Confidence 899999999999998 688774 5555432 222 11234678999
Q ss_pred ccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE----------------------eCcc---h--HHHHHHH--
Q psy8712 407 TLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK----------------------IDPQ---Q--DETWGRL-- 457 (651)
Q Consensus 407 Tl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~----------------------~~~~---~--~~~~~~l-- 457 (651)
|..+..+. ..+++++..+.+........+|.|.++. |+.. + ++....+
T Consensus 275 T~~p~~~~---~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~ 351 (1171)
T TIGR01054 275 TGRPRGKR---AKLFRELLGFEVGGGSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLEN 351 (1171)
T ss_pred CCCccccH---HHHcccccceEecCccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHh
Confidence 94332333 2344555555555555455555554443 3332 1 1111111
Q ss_pred -------------------hhccccceeec----cccccCCCCCCC-CCEEEEeCCCC
Q psy8712 458 -------------------RSHIQTDGVHA----RDNARPGIDISG-LPFIINMTLPD 491 (651)
Q Consensus 458 -------------------~~~~~~~~l~~----td~~~rGIDip~-v~~VIn~dlP~ 491 (651)
++..+.+++++ ||.++||||+|+ |++|||||+|.
T Consensus 352 ~g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 352 HGVKAVAYHATKPKEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CCceEEEEeCCCCHHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 23334556667 589999999999 89999999996
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=275.33 Aligned_cols=236 Identities=20% Similarity=0.296 Sum_probs=167.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC----cccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH----LSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~----l~l~~ 361 (651)
+||+|.||++||+.+.+.++++...++. ++++....|.....+......+.||||+++|.+|..++.... ..+++
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~-~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~ 195 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPG-KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRN 195 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCC-cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhc
Confidence 7899999999999999999999887764 588888888888887778888999999999999988554432 24688
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCce-
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV- 439 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i- 439 (651)
+++||+||+|..-. .|+.++..++++|... +..+.++|+|+.|||+. +...+++.+...+....+... ..+...
T Consensus 196 Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~--np~e~~~~l~~~~f~~~v~~~-g~~~~~~ 271 (851)
T COG1205 196 LKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLA--NPGEFAEELFGRDFEVPVDED-GSPRGLR 271 (851)
T ss_pred CcEEEEecceeccc-cchhHHHHHHHHHHHHHhccCCCceEEEEecccc--ChHHHHHHhcCCcceeeccCC-CCCCCce
Confidence 99999999997643 3666665555554322 11234689999999997 566777777654433322211 111111
Q ss_pred -----------------------------------EEEEEEeCcchHHHH------------------------------
Q psy8712 440 -----------------------------------HHVVVKIDPQQDETW------------------------------ 454 (651)
Q Consensus 440 -----------------------------------~~~~~~~~~~~~~~~------------------------------ 454 (651)
.+.+++++.+.....
T Consensus 272 ~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~ 351 (851)
T COG1205 272 YFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHRE 351 (851)
T ss_pred EEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHH
Confidence 123444433321111
Q ss_pred -----HHHhhccccceeeccccccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeeeCCccccccc
Q psy8712 455 -----GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYH 526 (651)
Q Consensus 455 -----~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~ 526 (651)
+...+.-+..++.+|+.+.-||||.++..||++..|. +..+|.||.||+||.++.+..+.+...+.-..||.
T Consensus 352 er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~ 429 (851)
T COG1205 352 ERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYL 429 (851)
T ss_pred HHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhh
Confidence 1112233445566677778899999999999999999 89999999999999998888888888655555554
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-27 Score=268.81 Aligned_cols=337 Identities=19% Similarity=0.223 Sum_probs=264.8
Q ss_pred cccccccchhhhhccCcchhhccccccccccCCCC------------CCCCCCCCeEEEecCCCCceeeeeccccccCCc
Q psy8712 211 LGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATP------------FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPV 278 (651)
Q Consensus 211 ~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~------------~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~ 278 (651)
-|++|..+.-|+.+ .+.+|.|..|| |..+.|||+++|+++|.|||.++++|+ +
T Consensus 573 ~G~af~~d~~~q~~----------F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAA-----F 637 (1139)
T COG1197 573 KGFAFPPDTEWQEE----------FEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAA-----F 637 (1139)
T ss_pred cCCCCCCChHHHHH----------HHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHH-----H
Confidence 59999999999876 78999999998 999999999999999999999999998 5
Q ss_pred cccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc----CCcEEEECchhhHHHHhC
Q psy8712 279 KLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS----GVDIVVGTPGRMEDLISG 354 (651)
Q Consensus 279 ~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~----~~dIlV~TP~rL~~ll~~ 354 (651)
++..+++|+.|||||.-||+|+++.|+.-.+.++ +++..+..-.+.+++...+++ .+|||||| +-+-+
T Consensus 638 kAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP---V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~ 709 (1139)
T COG1197 638 KAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFP---VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLS 709 (1139)
T ss_pred HHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCC---eeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhC
Confidence 5667789999999999999999999998888777 999999988888887766543 58999999 44556
Q ss_pred CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCC
Q psy8712 355 GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA 434 (651)
Q Consensus 355 ~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~ 434 (651)
+.+.++++.+|||||-|+ |+-.-++-++.+.. +.-++.+|||.-| ....++-.-+++...|...+.+.
T Consensus 710 kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~------~VDvLTLSATPIP-RTL~Msm~GiRdlSvI~TPP~~R 777 (1139)
T COG1197 710 KDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRA------NVDVLTLSATPIP-RTLNMSLSGIRDLSVIATPPEDR 777 (1139)
T ss_pred CCcEEecCCeEEEechhh-----cCccHHHHHHHHhc------cCcEEEeeCCCCc-chHHHHHhcchhhhhccCCCCCC
Confidence 788899999999999775 55555666677766 6899999999887 77788877777766666665554
Q ss_pred ccCc----------e-----------EEEEEEeCcch-----HHHHHHH------------------------hhccccc
Q psy8712 435 VPET----------V-----------HHVVVKIDPQQ-----DETWGRL------------------------RSHIQTD 464 (651)
Q Consensus 435 ~~~~----------i-----------~~~~~~~~~~~-----~~~~~~l------------------------~~~~~~~ 464 (651)
.+-. | -|+|+..+.-+ .+.+..+ +.....+
T Consensus 778 ~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d 857 (1139)
T COG1197 778 LPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD 857 (1139)
T ss_pred cceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC
Confidence 3210 0 12333333221 1111111 4455778
Q ss_pred eeeccccccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccc
Q psy8712 465 GVHARDNARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLT 543 (651)
Q Consensus 465 ~l~~td~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~ 543 (651)
+++||.....|||||+++.+|..+.-. -....+|--||+||..+.|+||.++.+.
T Consensus 858 VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~------------------------ 913 (1139)
T COG1197 858 VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ------------------------ 913 (1139)
T ss_pred EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc------------------------
Confidence 899999999999999999999766543 3457888889999999999999999863
Q ss_pred cccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhc----CccccccccccCCcccCCCceeecceecccC--ccch
Q psy8712 544 DVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLN----VTIQQVDDKLEIPADEFDGKVVYGQKRVNMG--SSYE 617 (651)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~----~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~ 617 (651)
..+.-+-.++|+.|+++.. ..++.-+.+++ +++...|.++++.+ ..|+
T Consensus 914 --------------------k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIR------GaGNlLG~eQSG~I~~VGf~ 967 (1139)
T COG1197 914 --------------------KALTEDAEKRLEAIASFTELGAGFKLAMHDLEIR------GAGNLLGEEQSGHIESVGFD 967 (1139)
T ss_pred --------------------cccCHHHHHHHHHHHhhhhcCchHHHHhcchhcc------ccccccCccccCchheecHH
Confidence 1112245778888887433 66776676666 88899999999875 8899
Q ss_pred hhHhhhhHHHHHHHH
Q psy8712 618 NHVTQMEPSVNKLSK 632 (651)
Q Consensus 618 ~~~~~~~~~~~el~~ 632 (651)
-+.+.|+++|.+|..
T Consensus 968 LY~~mLeeAI~~lk~ 982 (1139)
T COG1197 968 LYMEMLEEAIAALKG 982 (1139)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999988
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=269.98 Aligned_cols=214 Identities=21% Similarity=0.265 Sum_probs=147.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHH-hhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~-l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++|+.|||++|.|+++.+.. ++... +..+...+++.. ......+|+|+|||+|++++.+ ...++++++
T Consensus 47 ~ilvlqPrR~aA~qiA~rva~~~~~~~---g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~ 116 (819)
T TIGR01970 47 KIIMLEPRRLAARSAAQRLASQLGEAV---GQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGA 116 (819)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCc---CcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCE
Confidence 699999999999999998853 43332 245555555443 2344689999999999998876 457899999
Q ss_pred Eeeccch-hhhhccchH-HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCcc------
Q psy8712 365 FVLDEAD-GLLKQGYGN-LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP------ 436 (651)
Q Consensus 365 lViDEaD-~ll~~gf~~-~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~------ 436 (651)
|||||+| ++++.++.- .+..+...++. +.|+|+||||++. .. + ..++.++..|.+.+.....
T Consensus 117 VIiDEaHER~L~~Dl~L~ll~~i~~~lr~------dlqlIlmSATl~~-~~--l-~~~l~~~~vI~~~gr~~pVe~~y~~ 186 (819)
T TIGR01970 117 LIFDEFHERSLDADLGLALALDVQSSLRE------DLKILAMSATLDG-ER--L-SSLLPDAPVVESEGRSFPVEIRYLP 186 (819)
T ss_pred EEEeccchhhhccchHHHHHHHHHHhcCC------CceEEEEeCCCCH-HH--H-HHHcCCCcEEEecCcceeeeeEEee
Confidence 9999999 577765543 23455555655 6899999999986 32 2 4556554444443321100
Q ss_pred --------------------CceEEEEEEeCcchH--HHHHHHh----------------------------hcccccee
Q psy8712 437 --------------------ETVHHVVVKIDPQQD--ETWGRLR----------------------------SHIQTDGV 466 (651)
Q Consensus 437 --------------------~~i~~~~~~~~~~~~--~~~~~l~----------------------------~~~~~~~l 466 (651)
..-.+.++|++...+ .....+. ......++
T Consensus 187 ~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVl 266 (819)
T TIGR01970 187 LRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVV 266 (819)
T ss_pred cchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEE
Confidence 001235566654332 1111111 11234567
Q ss_pred eccccccCCCCCCCCCEEEEeCCCCC------------------hhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 467 HARDNARPGIDISGLPFIINMTLPDD------------------KANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn~dlP~s------------------~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
.+||.+++|||||+|++|||+++|+. ..+|+||+|||||. +.|.||.|+++++
T Consensus 267 VATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 267 LATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred EecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 78999999999999999999999863 34699999999999 8999999998753
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=265.06 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=70.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------c
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------L 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l 357 (651)
++++|++||++||.|.++.+..+..+++ +++.++.||.+...+.+.. .++||++|||+++ .|+++... .
T Consensus 120 ~~v~VvTpt~~LA~qd~e~~~~l~~~lG---l~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~ 195 (790)
T PRK09200 120 KGVHLITVNDYLAKRDAEEMGQVYEFLG---LTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDK 195 (790)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhcC---CeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhh
Confidence 4689999999999999999999999886 9999999999843333333 4599999999999 56665432 3
Q ss_pred ccCCcceEeeccchhhh
Q psy8712 358 SLTHCRFFVLDEADGLL 374 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll 374 (651)
.++.+.++||||||.|+
T Consensus 196 ~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 196 VQRPLNYAIIDEIDSIL 212 (790)
T ss_pred cccccceEEEeccccce
Confidence 56889999999999876
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=269.09 Aligned_cols=214 Identities=18% Similarity=0.249 Sum_probs=146.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHH-hhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~-l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++|++|||++|.|+++.+.. ++... +..+...+++.+.. ....+|+|+|||+|++++.+ ...++++++
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l~~~~---g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~ 119 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQLGEKP---GETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGL 119 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHhCccc---CceEEEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcE
Confidence 699999999999999998854 44433 36677777765432 23568999999999998876 457899999
Q ss_pred Eeeccchh-hhhccc-hHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCcc------
Q psy8712 365 FVLDEADG-LLKQGY-GNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP------ 436 (651)
Q Consensus 365 lViDEaD~-ll~~gf-~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~------ 436 (651)
|||||+|. .++..+ ...+..+++.++. +.|+++||||++. . .+ ..++.++..|.+.+.....
T Consensus 120 IIlDEaHER~l~~Dl~L~ll~~i~~~lr~------~lqlilmSATl~~-~--~l-~~~~~~~~~I~~~gr~~pV~~~y~~ 189 (812)
T PRK11664 120 VILDEFHERSLQADLALALLLDVQQGLRD------DLKLLIMSATLDN-D--RL-QQLLPDAPVIVSEGRSFPVERRYQP 189 (812)
T ss_pred EEEcCCCccccccchHHHHHHHHHHhCCc------cceEEEEecCCCH-H--HH-HHhcCCCCEEEecCccccceEEecc
Confidence 99999996 444332 2234455566655 6899999999985 2 23 4556555444443321100
Q ss_pred --------------------CceEEEEEEeCcchH--HHHHHH----------------------------hhcccccee
Q psy8712 437 --------------------ETVHHVVVKIDPQQD--ETWGRL----------------------------RSHIQTDGV 466 (651)
Q Consensus 437 --------------------~~i~~~~~~~~~~~~--~~~~~l----------------------------~~~~~~~~l 466 (651)
..-...++|++...+ .....+ ....+..++
T Consensus 190 ~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVl 269 (812)
T PRK11664 190 LPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVV 269 (812)
T ss_pred CchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEE
Confidence 001234555544321 111111 111234567
Q ss_pred eccccccCCCCCCCCCEEEEeCCCCC------------------hhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 467 HARDNARPGIDISGLPFIINMTLPDD------------------KANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn~dlP~s------------------~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
.+||.+++|||||+|++|||+++|+. ..+|+||+|||||. ..|.||.|+++++
T Consensus 270 vATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 270 LATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred EecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 78999999999999999999888753 35899999999999 7999999999754
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=258.54 Aligned_cols=222 Identities=17% Similarity=0.204 Sum_probs=152.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hcc---CCcEEEECchhhHH--HHhCCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LSS---GVDIVVGTPGRMED--LISGGHL 357 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~~---~~dIlV~TP~rL~~--ll~~~~l 357 (651)
..|||.|...|++.+...+... +|....+.++....++... +.+ .++|+.-|||++.. .+.....
T Consensus 306 itvVISPL~SLm~DQv~~L~~~-------~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~ 378 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKK-------GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLA 378 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhc-------CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHH
Confidence 4789999999998666555322 3888888888887655433 333 47999999999864 2222233
Q ss_pred ccCC---cceEeeccchhhhhcc--chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-ccCCeEEEccC
Q psy8712 358 SLTH---CRFFVLDEADGLLKQG--YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-MYFPTWVDLKG 431 (651)
Q Consensus 358 ~l~~---l~~lViDEaD~ll~~g--f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l~~p~~i~~~~ 431 (651)
.+.. +.++|||||||..+|| |+++.+++.....+. ....+|.+|||.+...-.++++.+ +++|..+.
T Consensus 379 ~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~----~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--- 451 (941)
T KOG0351|consen 379 DLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRF----PGVPFIALTATATERVREDVIRSLGLRNPELFK--- 451 (941)
T ss_pred hccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhC----CCCCeEEeehhccHHHHHHHHHHhCCCCcceec---
Confidence 4444 8999999999999996 888877765443332 137999999999874444555443 33443221
Q ss_pred CCCccCceEE--------------------------EEEEeCcchH--HHHHHH-------------------------h
Q psy8712 432 EDAVPETVHH--------------------------VVVKIDPQQD--ETWGRL-------------------------R 458 (651)
Q Consensus 432 ~~~~~~~i~~--------------------------~~~~~~~~~~--~~~~~l-------------------------~ 458 (651)
....++++.. .+++|..+.. ..-..+ .
T Consensus 452 ~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w 531 (941)
T KOG0351|consen 452 SSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAW 531 (941)
T ss_pred ccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHH
Confidence 1122222221 2344443321 111111 1
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
-..+..++++|-.+..|||.|||++||||.+|.+.+.|+|.+|||||+|....|++|+...|-
T Consensus 532 ~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~ 594 (941)
T KOG0351|consen 532 MSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADI 594 (941)
T ss_pred hcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHH
Confidence 223456677888889999999999999999999999999999999999999999999998753
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=249.21 Aligned_cols=209 Identities=16% Similarity=0.132 Sum_probs=131.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+.+.++++.... ...+..+.+|.... ...+|+|+||+++.+... ..++++++|
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~---~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~i 226 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFP---REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMV 226 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhcccc---ccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEE
Confidence 79999999999999999999887432 24555666665432 347999999999875432 246889999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHH--H------------HHHhcc-----CCeE
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK--M------------AERLMY-----FPTW 426 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~--l------------~~~~l~-----~p~~ 426 (651)
|+||||++... .+..++..++. ..|+++||||+....... + ...++. .+..
T Consensus 227 IvDEaH~~~~~----~~~~il~~~~~------~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~ 296 (501)
T PHA02558 227 IVDECHLFTGK----SLTSIITKLDN------CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKI 296 (501)
T ss_pred EEEchhcccch----hHHHHHHhhhc------cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceE
Confidence 99999998753 45677777765 478999999986411111 1 111111 1111
Q ss_pred E--EccCCCCc----------------cC-------------ce----EEEEEEeCcch---------------------
Q psy8712 427 V--DLKGEDAV----------------PE-------------TV----HHVVVKIDPQQ--------------------- 450 (651)
Q Consensus 427 i--~~~~~~~~----------------~~-------------~i----~~~~~~~~~~~--------------------- 450 (651)
. .+...... .. .+ ...+++++..+
T Consensus 297 ~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G 376 (501)
T PHA02558 297 NSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSG 376 (501)
T ss_pred EEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 11000000 00 00 11222222111
Q ss_pred ------HHHHHHHhhccccceeecc-ccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeee
Q psy8712 451 ------DETWGRLRSHIQTDGVHAR-DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517 (651)
Q Consensus 451 ------~~~~~~l~~~~~~~~l~~t-d~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~ 517 (651)
+.......+......+.+| +.+.+|+|+|++++||++++|.+...|+||+||++|.+..+....++.
T Consensus 377 ~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 377 EVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 1111111222233456666 889999999999999999999999999999999999877654444444
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-25 Score=249.69 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=74.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Ccc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HLS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l~ 358 (651)
+++|++||++||.|.++++..+.++++ +++.+++||.+...+.... .+||++|||++| .|+++.+ .+.
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~LG---Lsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~ 173 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFLG---LSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKV 173 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCC---CeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhh
Confidence 589999999999999999999999886 9999999999876665554 489999999999 9998876 356
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
++.+.++||||+|.|+
T Consensus 174 ~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 174 QRPFHFAIIDEVDSIL 189 (745)
T ss_pred ccccceeEeecHHHHh
Confidence 7999999999999876
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=241.87 Aligned_cols=218 Identities=17% Similarity=0.173 Sum_probs=136.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH------------HHHHHHhc------cCCcEEEECch
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV------------KDQMSVLS------SGVDIVVGTPG 346 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~------------~~q~~~L~------~~~dIlV~TP~ 346 (651)
.++++++|+++|+.|+++.++.+... ++..+.|+... ........ -..+|+|+||+
T Consensus 30 ~~ii~v~P~~~L~~q~~~~l~~~f~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~ 103 (358)
T TIGR01587 30 DRVIIALPTRATINAMYRRAKELFGS------NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTID 103 (358)
T ss_pred CeEEEEeehHHHHHHHHHHHHHHhCc------ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHH
Confidence 37999999999999999999887421 22333333221 11111111 13689999999
Q ss_pred hhHHHHhCCC----cccC--CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 347 RMEDLISGGH----LSLT--HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 347 rL~~ll~~~~----l~l~--~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
+++..+..+. ..+. ..+++||||||.+.++++.. +..+++.++.. +.|++++|||+++ .+.++...+
T Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~-----~~~~i~~SATlp~-~l~~~~~~~ 176 (358)
T TIGR01587 104 QVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDN-----DVPILLMSATLPK-FLKEYAEKI 176 (358)
T ss_pred HHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHc-----CCCEEEEecCchH-HHHHHHhcC
Confidence 9988765521 1222 23789999999999865433 66666655432 5899999999986 777776655
Q ss_pred ccCCeEEEcc---------------CCCCc------------cCceEEEEEEeCcchHH--HHHHH--------------
Q psy8712 421 MYFPTWVDLK---------------GEDAV------------PETVHHVVVKIDPQQDE--TWGRL-------------- 457 (651)
Q Consensus 421 l~~p~~i~~~---------------~~~~~------------~~~i~~~~~~~~~~~~~--~~~~l-------------- 457 (651)
...+...... ..... ...-.+.+++|+..+.. .+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~ 256 (358)
T TIGR01587 177 GYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHS 256 (358)
T ss_pred CCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEEC
Confidence 4321110000 00000 00113466666654321 11111
Q ss_pred -----------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce----EEEEee
Q psy8712 458 -----------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG----LAISLV 516 (651)
Q Consensus 458 -----------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G----~ai~lv 516 (651)
+......++++|+.+++|||++ +++||+++.| .++|+||+||+||.|+.+ .++.+.
T Consensus 257 ~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~ 333 (358)
T TIGR01587 257 RFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIIT 333 (358)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEe
Confidence 2223456788999999999996 8999999888 789999999999998643 566555
Q ss_pred eC
Q psy8712 517 ST 518 (651)
Q Consensus 517 ~~ 518 (651)
..
T Consensus 334 ~~ 335 (358)
T TIGR01587 334 IA 335 (358)
T ss_pred ec
Confidence 54
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=213.81 Aligned_cols=123 Identities=35% Similarity=0.612 Sum_probs=104.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHH-HHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK-DQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~-~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
++||++|+++|+.|+.+.+..+.... ++++..++|+.... .....+..+++|+|+||+++.+++......+.++++
T Consensus 46 ~~lii~P~~~l~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~ 122 (169)
T PF00270_consen 46 RVLIIVPTRALAEQQFERLRKFFSNT---NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSL 122 (169)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTTTT---TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESE
T ss_pred eEEEEeeccccccccccccccccccc---ccccccccccccccccccccccccccccccCcchhhcccccccccccccee
Confidence 79999999999999999999988763 48888999998865 555566667999999999999999987667888999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l 416 (651)
|||||+|.+..+.+...+..+++.+.... +.|++++|||+++ .++++
T Consensus 123 iViDE~h~l~~~~~~~~~~~i~~~~~~~~----~~~~i~~SAT~~~-~~~~~ 169 (169)
T PF00270_consen 123 IVIDEAHHLSDETFRAMLKSILRRLKRFK----NIQIILLSATLPS-NVEKL 169 (169)
T ss_dssp EEEETHHHHHHTTHHHHHHHHHHHSHTTT----TSEEEEEESSSTH-HHHHH
T ss_pred eccCcccccccccHHHHHHHHHHHhcCCC----CCcEEEEeeCCCh-hHhhC
Confidence 99999999999888888988888874421 4799999999994 77653
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=246.99 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=67.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCcc---HHHHHHHhccCCcEEEECchhh-HHHHhC------C
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVN---VKDQMSVLSSGVDIVVGTPGRM-EDLISG------G 355 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~---~~~q~~~L~~~~dIlV~TP~rL-~~ll~~------~ 355 (651)
.++|++||++||.|.++++..+.++++ +++.+++++.. ...+......++||++|||++| .+++.. .
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~LG---Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~ 189 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWLG---LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKE 189 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhcC---CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchh
Confidence 589999999999999999999998886 88888877632 2222333335799999999999 566543 2
Q ss_pred CcccCCcceEeeccchhhh
Q psy8712 356 HLSLTHCRFFVLDEADGLL 374 (651)
Q Consensus 356 ~l~l~~l~~lViDEaD~ll 374 (651)
...++.+.++||||||.|+
T Consensus 190 ~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 190 GKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred hcccccCcEEEEecHhhHh
Confidence 3457889999999999986
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=224.10 Aligned_cols=224 Identities=16% Similarity=0.165 Sum_probs=148.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h---ccCCcEEEECchhhHHHHh----CC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L---SSGVDIVVGTPGRMEDLIS----GG 355 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L---~~~~dIlV~TP~rL~~ll~----~~ 355 (651)
..||++|..+|...+.+.+.++. +.+..+.+-.+..+..+. | +.+..|+..||+....-.. ++
T Consensus 63 ITIV~SPLiALIkDQiDHL~~LK-------Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~ 135 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRLK-------VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG 135 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhcC-------CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH
Confidence 57899999999998888887764 555555555444333322 2 3367899999998743221 22
Q ss_pred CcccCCcceEeeccchhhhhcc--chHHHHHHH---hcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-ccCCeEEEc
Q psy8712 356 HLSLTHCRFFVLDEADGLLKQG--YGNLIDRMH---KQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-MYFPTWVDL 429 (651)
Q Consensus 356 ~l~l~~l~~lViDEaD~ll~~g--f~~~i~~il---~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l~~p~~i~~ 429 (651)
..+-+.+.++|+|||||..+|| |+++...+- ..++ ...-+.++||.+++.-+++...+ +++|+-+.-
T Consensus 136 L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~-------~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk 208 (641)
T KOG0352|consen 136 LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP-------GVPWVALTATANAKVQEDIAFQLKLRNPVAIFK 208 (641)
T ss_pred HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC-------CCceEEeecccChhHHHHHHHHHhhcCcHHhcc
Confidence 2234568899999999999996 888876553 3343 47889999999883333443332 445543221
Q ss_pred cCC------------CC------------------------ccCce-EEEEEEeCcchHH--HHHHH-hh----------
Q psy8712 430 KGE------------DA------------------------VPETV-HHVVVKIDPQQDE--TWGRL-RS---------- 459 (651)
Q Consensus 430 ~~~------------~~------------------------~~~~i-~~~~~~~~~~~~~--~~~~l-~~---------- 459 (651)
.+. +. .+... -.-++.|.+++.. ....+ ..
T Consensus 209 TP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAG 288 (641)
T KOG0352|consen 209 TPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAG 288 (641)
T ss_pred CcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcc
Confidence 100 00 00000 0124455554322 11111 11
Q ss_pred --------------ccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 460 --------------HIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 460 --------------~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
..+.-+|.+|..+..|+|.|+|++|||+++|.+...|+|..||+||+|+..+|-++++.+|...
T Consensus 289 LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 289 LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred cccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHH
Confidence 1234456778889999999999999999999999999999999999999999999999876543
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=249.78 Aligned_cols=225 Identities=18% Similarity=0.268 Sum_probs=163.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++++|+|+|+||.++++.++++..+ +++|...+|+.+..... -.+++|||+|||++..++++...-+..+++|
T Consensus 78 k~vYivPlkALa~Ek~~~~~~~~~~----GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lv 150 (766)
T COG1204 78 KVVYIVPLKALAEEKYEEFSRLEEL----GIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLV 150 (766)
T ss_pred cEEEEeChHHHHHHHHHHhhhHHhc----CCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEE
Confidence 6899999999999999999955543 49999999998855422 1358999999999999998887778999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeE-----------------E-
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW-----------------V- 427 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~-----------------i- 427 (651)
||||+|.+.+...++.++.|+.+++.... ..|++++|||++ +..+++.++-.++.. +
T Consensus 151 ViDEiH~l~d~~RG~~lE~iv~r~~~~~~---~~rivgLSATlp--N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~ 225 (766)
T COG1204 151 VIDEIHLLGDRTRGPVLESIVARMRRLNE---LIRIVGLSATLP--NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFL 225 (766)
T ss_pred EEeeeeecCCcccCceehhHHHHHHhhCc---ceEEEEEeeecC--CHHHHHHHhCCcccccCCCCcccccCCccceEEE
Confidence 99999999887788888888888766421 389999999998 688888876443221 0
Q ss_pred EccCCCC----------------ccCceEEEEEEeCcchHH---------------------------------------
Q psy8712 428 DLKGEDA----------------VPETVHHVVVKIDPQQDE--------------------------------------- 452 (651)
Q Consensus 428 ~~~~~~~----------------~~~~i~~~~~~~~~~~~~--------------------------------------- 452 (651)
....... ......|+.+||++++..
T Consensus 226 ~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (766)
T COG1204 226 GADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSE 305 (766)
T ss_pred EecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccc
Confidence 0110110 112335777777765411
Q ss_pred -------------------------HHHHHhhccccceeeccccccCCCCCCCCCEEE----EeC-----CCCChhhhhh
Q psy8712 453 -------------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFII----NMT-----LPDDKANYVH 498 (651)
Q Consensus 453 -------------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VI----n~d-----lP~s~~~Yih 498 (651)
..+..++.....++.+|..++.|++.|.-++|| -|| .+-+.-+|+|
T Consensus 306 ~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~Q 385 (766)
T COG1204 306 DEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQ 385 (766)
T ss_pred hHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhh
Confidence 111114444566677888888899999866665 377 5678899999
Q ss_pred hcCccccCCC--ceEEEEeeeCCccc
Q psy8712 499 RIGRVGRAER--MGLAISLVSTVPEK 522 (651)
Q Consensus 499 RiGR~GR~g~--~G~ai~lv~~~de~ 522 (651)
+.|||||.|- .|.++.+....++.
T Consensus 386 M~GRAGRPg~d~~G~~~i~~~~~~~~ 411 (766)
T COG1204 386 MAGRAGRPGYDDYGEAIILATSHDEL 411 (766)
T ss_pred ccCcCCCCCcCCCCcEEEEecCccch
Confidence 9999999875 56777777444433
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=228.52 Aligned_cols=208 Identities=17% Similarity=0.176 Sum_probs=127.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCC-CCCeeEEEEeCCccHH--HH------------------HHHhccCCcEEEEC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFIT-DPKIRELLIIGGVNVK--DQ------------------MSVLSSGVDIVVGT 344 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~-~~~i~v~~l~Gg~~~~--~q------------------~~~L~~~~dIlV~T 344 (651)
++++++|+++|+.|+++.++.+...+. ..++.+..+.|....+ .. .....+.++|+++|
T Consensus 41 ~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~ 120 (357)
T TIGR03158 41 DTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTN 120 (357)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEec
Confidence 479999999999999999998875432 1236666666642211 00 01113468999999
Q ss_pred chhhHHHHhCCC-----c---ccCCcceEeeccchhhhhccc-----hHHHHHHHhcCCCccCCCCceeEEEEeeccChH
Q psy8712 345 PGRMEDLISGGH-----L---SLTHCRFFVLDEADGLLKQGY-----GNLIDRMHKQIPKITSDGKRLQMIVCSATLHDF 411 (651)
Q Consensus 345 P~rL~~ll~~~~-----l---~l~~l~~lViDEaD~ll~~gf-----~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~ 411 (651)
|+.+..+++... . .+.+++++||||+|.+..+.. .-....+++.... ..+++++|||+++
T Consensus 121 p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~i~lSAT~~~- 193 (357)
T TIGR03158 121 PDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC------RRKFVFLSATPDP- 193 (357)
T ss_pred HHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc------CCcEEEEecCCCH-
Confidence 999977665321 1 257899999999999764321 1123333333332 3699999999987
Q ss_pred HHHHHHHHh--ccCCeEEEccCC-------------------CCccCceE------------------------------
Q psy8712 412 DVKKMAERL--MYFPTWVDLKGE-------------------DAVPETVH------------------------------ 440 (651)
Q Consensus 412 ~v~~l~~~~--l~~p~~i~~~~~-------------------~~~~~~i~------------------------------ 440 (651)
.+....... +..|.. .+.+. ..+...++
T Consensus 194 ~~~~~l~~~~~~~~~~~-~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~ 272 (357)
T TIGR03158 194 ALILRLQNAKQAGVKIA-PIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPG 272 (357)
T ss_pred HHHHHHHhccccCceee-eecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCC
Confidence 655555543 332211 11111 00001222
Q ss_pred -EEEEEeCcchH--HHHHHHhh---------------------ccccceeeccccccCCCCCCCCCEEEEeCCCCChhhh
Q psy8712 441 -HVVVKIDPQQD--ETWGRLRS---------------------HIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANY 496 (651)
Q Consensus 441 -~~~~~~~~~~~--~~~~~l~~---------------------~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~Y 496 (651)
..+++|++... .....+.. ..+..++.+|+.++||||++.+ +|| ++ |.+.++|
T Consensus 273 ~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~y 349 (357)
T TIGR03158 273 ERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAMQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAF 349 (357)
T ss_pred CeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHH
Confidence 34555554332 11122211 1134677889999999999987 666 56 9999999
Q ss_pred hhhcCccc
Q psy8712 497 VHRIGRVG 504 (651)
Q Consensus 497 ihRiGR~G 504 (651)
+||+||+|
T Consensus 350 iqR~GR~g 357 (357)
T TIGR03158 350 WQRLGRLG 357 (357)
T ss_pred hhhcccCC
Confidence 99999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=241.37 Aligned_cols=106 Identities=13% Similarity=0.179 Sum_probs=76.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h-ccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L-SSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L-~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
++|||+||++|+.|+.+.+++.. + .++..+.|+.+..++.+. + ...++||||||+.+. +.+++
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~f---g---~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~ 258 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARF---G---APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKN 258 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh---C---CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccC
Confidence 79999999999999999998643 2 678889999876554433 2 345899999998763 45789
Q ss_pred cceEeeccchhhhhcc---chHHHHHHH--hcCCCccCCCCceeEEEEeeccCh
Q psy8712 362 CRFFVLDEADGLLKQG---YGNLIDRMH--KQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 362 l~~lViDEaD~ll~~g---f~~~i~~il--~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+++|||||+|....+. ...+.+.+. +.... +.|++++|||.+.
T Consensus 259 l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~------~~~~il~SATps~ 306 (679)
T PRK05580 259 LGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE------NIPVVLGSATPSL 306 (679)
T ss_pred CCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc------CCCEEEEcCCCCH
Confidence 9999999999765321 111222221 12222 5899999999765
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-24 Score=225.26 Aligned_cols=224 Identities=20% Similarity=0.225 Sum_probs=151.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH----HhccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS----VLSSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~----~L~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
+.|+|+|..+||+|-++.|+.-...+. +++..-+|-...+.... .-...+||||||-+-+..+++.+ -.+.+
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~Lg---lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgd 338 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLG---LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGD 338 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhccc---ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccc
Confidence 689999999999999999987666554 78777777655433321 11235899999999999999988 66899
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccC----------
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG---------- 431 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~---------- 431 (651)
+..+||||+|.+-+...++-+.-++.+|....+ ..|+|.+|||+. +-..+++.+-.+++..+-.+
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~---~AQ~i~LSATVg--Np~elA~~l~a~lV~y~~RPVplErHlvf~ 413 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFP---GAQFIYLSATVG--NPEELAKKLGAKLVLYDERPVPLERHLVFA 413 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCC---CCeEEEEEeecC--ChHHHHHHhCCeeEeecCCCCChhHeeeee
Confidence 999999999999886666666666655544332 479999999997 56778887754433221110
Q ss_pred --CCCccC-----------------ceEEEEEEeCcchHHH---------------------------HHHHhhccccce
Q psy8712 432 --EDAVPE-----------------TVHHVVVKIDPQQDET---------------------------WGRLRSHIQTDG 465 (651)
Q Consensus 432 --~~~~~~-----------------~i~~~~~~~~~~~~~~---------------------------~~~l~~~~~~~~ 465 (651)
+....+ ---|.++|..++.+.. .+..+......+
T Consensus 414 ~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~ 493 (830)
T COG1202 414 RNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAA 493 (830)
T ss_pred cCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcce
Confidence 110000 0124455555443221 111122333344
Q ss_pred eeccccccCCCCCCCCCEEEEeCCC-----CChhhhhhhcCccccCC--CceEEEEeeeCC
Q psy8712 466 VHARDNARPGIDISGLPFIINMTLP-----DDKANYVHRIGRVGRAE--RMGLAISLVSTV 519 (651)
Q Consensus 466 l~~td~~~rGIDip~v~~VIn~dlP-----~s~~~YihRiGR~GR~g--~~G~ai~lv~~~ 519 (651)
++.|..+..|+|+|. +.||.-.+. -++.+|.|+.||+||.+ ..|.+++++.+.
T Consensus 494 VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 494 VVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred EeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 445666677999996 666654443 27899999999999987 479999999873
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=239.55 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=86.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+.+.++.+.... ..++..+.|+.+... ...+....+|+|+||+.+...+..+.+.+.++++|
T Consensus 60 ~vLvl~Pt~~L~~Q~~~~~~~~~~~~---~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~li 135 (773)
T PRK13766 60 KVLILAPTKPLVEQHAEFFRKFLNIP---EEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLL 135 (773)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCC---CceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 69999999999999999998876422 246777888776654 34455568999999999988887888889999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
||||||++........+...+..... ..+++++|||.
T Consensus 136 VvDEaH~~~~~~~~~~i~~~~~~~~~------~~~il~lTaTP 172 (773)
T PRK13766 136 IFDEAHRAVGNYAYVYIAERYHEDAK------NPLVLGLTASP 172 (773)
T ss_pred EEECCccccccccHHHHHHHHHhcCC------CCEEEEEEcCC
Confidence 99999998764333334443333322 47899999996
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=246.66 Aligned_cols=203 Identities=22% Similarity=0.330 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHHHH-hhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccc
Q psy8712 292 PSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEA 370 (651)
Q Consensus 292 PTreLa~Qi~~~~~~-l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEa 370 (651)
.+++||.|+.+++.. ++...+ .++ ....+ ..++++|+|+|||+|++.+....+ ++++++||||||
T Consensus 130 AArsLA~RVA~El~~~lG~~VG---Y~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEA 195 (1294)
T PRK11131 130 AARTVANRIAEELETELGGCVG---YKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEA 195 (1294)
T ss_pred HHHHHHHHHHHHHhhhhcceec---eee-------cCccc---cCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCc
Confidence 378999999999875 443221 211 11111 235789999999999998876544 899999999999
Q ss_pred h-hhhhccchHH-HHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccC-----------
Q psy8712 371 D-GLLKQGYGNL-IDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPE----------- 437 (651)
Q Consensus 371 D-~ll~~gf~~~-i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~----------- 437 (651)
| ++++.+|... ++.++...| +.|+|++|||++. ..+++.|.+.|. |.+.+.....+
T Consensus 196 HERsLn~DfLLg~Lk~lL~~rp-------dlKvILmSATid~---e~fs~~F~~apv-I~V~Gr~~pVei~y~p~~~~~~ 264 (1294)
T PRK11131 196 HERSLNIDFILGYLKELLPRRP-------DLKVIITSATIDP---ERFSRHFNNAPI-IEVSGRTYPVEVRYRPIVEEAD 264 (1294)
T ss_pred cccccccchHHHHHHHhhhcCC-------CceEEEeeCCCCH---HHHHHHcCCCCE-EEEcCccccceEEEeecccccc
Confidence 9 5888887532 333332222 4799999999974 467776665553 44443321100
Q ss_pred --------------------ceEEEEEEeCcchH--HHHHHH--------------------------hhccccceeecc
Q psy8712 438 --------------------TVHHVVVKIDPQQD--ETWGRL--------------------------RSHIQTDGVHAR 469 (651)
Q Consensus 438 --------------------~i~~~~~~~~~~~~--~~~~~l--------------------------~~~~~~~~l~~t 469 (651)
.-..+++|++...+ .....+ .......++.+|
T Consensus 265 ~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVAT 344 (1294)
T PRK11131 265 DTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLAT 344 (1294)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEec
Confidence 01224455544331 111111 011234567789
Q ss_pred ccccCCCCCCCCCEEEEeC---------------CC---CChhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 470 DNARPGIDISGLPFIINMT---------------LP---DDKANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 470 d~~~rGIDip~v~~VIn~d---------------lP---~s~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
|.+++|||||+|++|||++ +| .|..+|.||+|||||. ..|.||.|+++++
T Consensus 345 NIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 345 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred cHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 9999999999999999986 44 4558999999999999 7899999999754
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=211.52 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=90.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|+|+||+.|+.|+.+.|.++..-- .-.++.++|..+.++....+ ...+|+|+||+.+.+-+..+.+++.++.++
T Consensus 60 kvlfLAPTKPLV~Qh~~~~~~v~~ip---~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~l 135 (542)
T COG1111 60 KVLFLAPTKPLVLQHAEFCRKVTGIP---EDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLL 135 (542)
T ss_pred eEEEecCCchHHHHHHHHHHHHhCCC---hhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEE
Confidence 69999999999999999999887643 35778888888876655444 457999999999999999999999999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
|+||||+-....-+-.+.+-+-+-.+ ++.++++|||..+
T Consensus 136 ifDEAHRAvGnyAYv~Va~~y~~~~k------~~~ilgLTASPGs 174 (542)
T COG1111 136 IFDEAHRAVGNYAYVFVAKEYLRSAK------NPLILGLTASPGS 174 (542)
T ss_pred EechhhhccCcchHHHHHHHHHHhcc------CceEEEEecCCCC
Confidence 99999998764333334332222222 5799999999765
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-22 Score=222.85 Aligned_cols=260 Identities=17% Similarity=0.225 Sum_probs=168.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC--c-cc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH--L-SL 359 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~--l-~l 359 (651)
+..++++|+|+++||..+.+-+.+-. ...+++|..++|+....... . ..++|||+|||++.-.-++.. . -+
T Consensus 163 ~~fKiVYIaPmKALa~Em~~~~~kkl---~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEKwDvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 163 DDFKIVYIAPMKALAAEMVDKFSKKL---APLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEKWDVVTRKSVGDSALF 236 (1230)
T ss_pred CCceEEEEechHHHHHHHHHHHhhhc---ccccceEEEecCcchhhHHH-H--HhcCEEEecccceeeeeeeeccchhhh
Confidence 34589999999999998777654433 33359999999998754433 1 248999999999854333322 2 25
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhccCCe-------------
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPT------------- 425 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~------------- 425 (651)
+.|++|||||+|.|-+ ..++.++.|+.++... .......+++++|||+| ++.+++..+-.+|.
T Consensus 237 ~~V~LviIDEVHlLhd-~RGpvlEtiVaRtlr~vessqs~IRivgLSATlP--N~eDvA~fL~vn~~~glfsFd~~yRPv 313 (1230)
T KOG0952|consen 237 SLVRLVIIDEVHLLHD-DRGPVLETIVARTLRLVESSQSMIRIVGLSATLP--NYEDVARFLRVNPYAGLFSFDQRYRPV 313 (1230)
T ss_pred hheeeEEeeeehhhcC-cccchHHHHHHHHHHHHHhhhhheEEEEeeccCC--CHHHHHHHhcCCCccceeeeccccccc
Confidence 8899999999998866 5778888887765421 11223689999999998 78888887765531
Q ss_pred EE-----EccCC--CCccC---------------ceEEEEEEeCcchHH-------------------------------
Q psy8712 426 WV-----DLKGE--DAVPE---------------TVHHVVVKIDPQQDE------------------------------- 452 (651)
Q Consensus 426 ~i-----~~~~~--~~~~~---------------~i~~~~~~~~~~~~~------------------------------- 452 (651)
.+ -.... ..... .=+|++++|..+.+.
T Consensus 314 pL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~e 393 (1230)
T KOG0952|consen 314 PLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKE 393 (1230)
T ss_pred ceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHH
Confidence 11 11111 01111 125677887766421
Q ss_pred -------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCC-----C------ChhhhhhhcCc
Q psy8712 453 -------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLP-----D------DKANYVHRIGR 502 (651)
Q Consensus 453 -------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP-----~------s~~~YihRiGR 502 (651)
..++.+......++.||..++-|+++|+ .+||.-+-+ . .+-+-+|..||
T Consensus 394 lf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGR 472 (1230)
T KOG0952|consen 394 LFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGR 472 (1230)
T ss_pred HHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhc
Confidence 1111133344556677888888999997 556654433 2 45678999999
Q ss_pred cccC--CCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHH
Q psy8712 503 VGRA--ERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEH 580 (651)
Q Consensus 503 ~GR~--g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~ 580 (651)
|||. +..|.++.+.+. |....|. .|+... .. -|.+++..+-++
T Consensus 473 AGRPqFd~~G~giIiTt~-dkl~~Y~--------------sLl~~~-----------------~p---iES~~~~~L~dn 517 (1230)
T KOG0952|consen 473 AGRPQFDSSGEGIIITTR-DKLDHYE--------------SLLTGQ-----------------NP---IESQLLPCLIDN 517 (1230)
T ss_pred cCCCCCCCCceEEEEecc-cHHHHHH--------------HHHcCC-----------------Ch---hHHHHHHHHHHh
Confidence 9994 578988877654 3333332 111111 11 378889999999
Q ss_pred hcCcccc
Q psy8712 581 LNVTIQQ 587 (651)
Q Consensus 581 ~~~~i~~ 587 (651)
++.+|..
T Consensus 518 LnAEi~L 524 (1230)
T KOG0952|consen 518 LNAEISL 524 (1230)
T ss_pred hhhheee
Confidence 9987764
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-21 Score=194.76 Aligned_cols=219 Identities=18% Similarity=0.241 Sum_probs=143.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhc---cCCcEEEECchhhHH---HHh--C
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLS---SGVDIVVGTPGRMED---LIS--G 354 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~---~~~dIlV~TP~rL~~---ll~--~ 354 (651)
.+||++|...|+..+.-+++.++ +....+....+.++.. ..+. ....++..||+.+.. ++. .
T Consensus 136 ~alvi~plislmedqil~lkqlg-------i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle 208 (695)
T KOG0353|consen 136 FALVICPLISLMEDQILQLKQLG-------IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE 208 (695)
T ss_pred ceEeechhHHHHHHHHHHHHHhC-------cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH
Confidence 58999999999998888888876 5555555444432221 2222 246899999999854 222 1
Q ss_pred CCcccCCcceEeeccchhhhhcc--chHHHHH--HHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc---------
Q psy8712 355 GHLSLTHCRFFVLDEADGLLKQG--YGNLIDR--MHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM--------- 421 (651)
Q Consensus 355 ~~l~l~~l~~lViDEaD~ll~~g--f~~~i~~--il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l--------- 421 (651)
+.+....++++.|||+||-.+|| |+++... |+++--+ +..++.++||.++ .|.+-++.++
T Consensus 209 ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~------~~~iigltatatn-~vl~d~k~il~ie~~~tf~ 281 (695)
T KOG0353|consen 209 KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFK------GAPIIGLTATATN-HVLDDAKDILCIEAAFTFR 281 (695)
T ss_pred HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCC------CCceeeeehhhhc-chhhHHHHHHhHHhhheee
Confidence 34556778899999999999986 7777553 3443322 5799999999987 5555444432
Q ss_pred ---cCCe-EEEccCCCCc--------cCce--------EEEEEEeCcchHHHHHHHh-hcc-------------------
Q psy8712 422 ---YFPT-WVDLKGEDAV--------PETV--------HHVVVKIDPQQDETWGRLR-SHI------------------- 461 (651)
Q Consensus 422 ---~~p~-~i~~~~~~~~--------~~~i--------~~~~~~~~~~~~~~~~~l~-~~~------------------- 461 (651)
+.|. ...+...... ...| --.+++.....++....+. .++
T Consensus 282 a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 282 AGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred cccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 1121 1111111110 0011 1133444333344444441 222
Q ss_pred -----ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhh--------------------------------------
Q psy8712 462 -----QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVH-------------------------------------- 498 (651)
Q Consensus 462 -----~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~Yih-------------------------------------- 498 (651)
+..++++|-.+..|||.|+|++|||..+|.+.++|+|
T Consensus 362 ~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffa 441 (695)
T KOG0353|consen 362 GWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFA 441 (695)
T ss_pred cccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeee
Confidence 3344556677777999999999999999999999999
Q ss_pred -----hcCccccCCCceEEEEeeeC
Q psy8712 499 -----RIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 499 -----RiGR~GR~g~~G~ai~lv~~ 518 (651)
..||+||.+.+..||+++.-
T Consensus 442 vfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 442 VFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred eecchhccccccCCCcccEEEEech
Confidence 88999999999999999874
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=224.14 Aligned_cols=83 Identities=16% Similarity=0.336 Sum_probs=75.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCCcccC-----
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGHLSLT----- 360 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~l~l~----- 360 (651)
++||+||++||.|+.+++..+.++++ +++.+++||.+...+...+ ++||+||||++| .++++.+.+.++
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~lG---LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~v 212 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWLG---LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQV 212 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhh
Confidence 78999999999999999999999886 9999999999998887666 599999999999 999998877665
Q ss_pred --CcceEeeccchhhh
Q psy8712 361 --HCRFFVLDEADGLL 374 (651)
Q Consensus 361 --~l~~lViDEaD~ll 374 (651)
.+.++||||||.|+
T Consensus 213 qr~~~~~IIDEADsmL 228 (970)
T PRK12899 213 GRGFYFAIIDEVDSIL 228 (970)
T ss_pred cccccEEEEechhhhh
Confidence 45899999999887
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-21 Score=210.15 Aligned_cols=304 Identities=18% Similarity=0.200 Sum_probs=208.2
Q ss_pred cccccccccCCCC------------CCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHH
Q psy8712 233 KNAEMSFNFGATP------------FKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQT 300 (651)
Q Consensus 233 k~~~~~~~f~~~~------------~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi 300 (651)
++...+..|..|. +..+-|+|++.++++|||||.++.+|+. .....+.|+..++||--||.|+
T Consensus 253 ~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml-----~ai~~G~Q~ALMAPTEILA~QH 327 (677)
T COG1200 253 AKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAML-----AAIEAGYQAALMAPTEILAEQH 327 (677)
T ss_pred HHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHH-----HHHHcCCeeEEeccHHHHHHHH
Confidence 3455666777665 8889999999999999999999999882 2245678999999999999999
Q ss_pred HHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhccC-CcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhc
Q psy8712 301 FNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSSG-VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ 376 (651)
Q Consensus 301 ~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~~-~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~ 376 (651)
++.+.++...++ +++..++|....+... ..+.+| .||||||- .+....+.++++.++|+||-|++
T Consensus 328 ~~~~~~~l~~~~---i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHRF--- 396 (677)
T COG1200 328 YESLRKWLEPLG---IRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHRF--- 396 (677)
T ss_pred HHHHHHHhhhcC---CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEeccccc---
Confidence 999999988776 9999999987754444 444455 99999994 45566788999999999999974
Q ss_pred cchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc------------cCCeEEEccCCCCcc---C----
Q psy8712 377 GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM------------YFPTWVDLKGEDAVP---E---- 437 (651)
Q Consensus 377 gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l------------~~p~~i~~~~~~~~~---~---- 437 (651)
+-.=+..+..-... .+.++.+|||.-| ....+...-. +.|+.-.+...+..+ +
T Consensus 397 --GV~QR~~L~~KG~~-----~Ph~LvMTATPIP-RTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ 468 (677)
T COG1200 397 --GVHQRLALREKGEQ-----NPHVLVMTATPIP-RTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIRE 468 (677)
T ss_pred --cHHHHHHHHHhCCC-----CCcEEEEeCCCch-HHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHH
Confidence 33333333332210 3689999999876 3333332211 112211111111111 0
Q ss_pred ---ceEEEEEEeCcch-------------------------------------HHHHHHHhhccccceeeccccccCCCC
Q psy8712 438 ---TVHHVVVKIDPQQ-------------------------------------DETWGRLRSHIQTDGVHARDNARPGID 477 (651)
Q Consensus 438 ---~i~~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~~~l~~td~~~rGID 477 (651)
.=+|.|+.|+--+ ++.....++..+.+++++|.+...|||
T Consensus 469 ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVd 548 (677)
T COG1200 469 EIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVD 548 (677)
T ss_pred HHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEeccc
Confidence 1134555543211 111111245556788888999999999
Q ss_pred CCCCCEEEEeCCCCChhhhhhhc-CccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhc
Q psy8712 478 ISGLPFIINMTLPDDKANYVHRI-GRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLL 556 (651)
Q Consensus 478 ip~v~~VIn~dlP~s~~~YihRi-GR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 556 (651)
+|+.+++|.+|.-+=--+-+|+. ||+||.+..++|++++.+...+
T Consensus 549 VPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~---------------------------------- 594 (677)
T COG1200 549 VPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSE---------------------------------- 594 (677)
T ss_pred CCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCCh----------------------------------
Confidence 99999999999887655556665 9999999999999999873100
Q ss_pred cccccCCcccchhHHHHHHHHHHH-hcCccccccccccCCcccCCCceeecceeccc
Q psy8712 557 SGTMVNGCCIWFDEKRMLGEIEEH-LNVTIQQVDDKLEIPADEFDGKVVYGQKRVNM 612 (651)
Q Consensus 557 ~~~~~~~~~i~~~e~~~l~~Ie~~-~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~ 612 (651)
.-.+.|+-+.+. =|..|++.+.+++-|. ...|.++++.
T Consensus 595 ------------~a~~RL~im~~t~DGF~IAE~DLklRGpG------e~lG~rQSG~ 633 (677)
T COG1200 595 ------------VAKQRLKIMRETTDGFVIAEEDLKLRGPG------ELLGTRQSGL 633 (677)
T ss_pred ------------hHHHHHHHHHhcCCcceehhhhHhccCCc------cccCCcccCC
Confidence 124667666653 3588998888888554 3456666665
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=209.99 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=86.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcc-cCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLS-LTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~-l~~l~~ 364 (651)
++++++||+-|+.|+...+..++.. ..+....||.........+-...+|+|.||+.+.+.|.++... ++.+.+
T Consensus 108 KiVF~aP~~pLv~QQ~a~~~~~~~~-----~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~ 182 (746)
T KOG0354|consen 108 KVVFLAPTRPLVNQQIACFSIYLIP-----YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSL 182 (746)
T ss_pred eEEEeeCCchHHHHHHHHHhhccCc-----ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEE
Confidence 7999999999999999777666542 4555666665544444456667899999999999988887665 599999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+||||||+-.....+..+.+-+-.++.. ..|+|++|||+.+
T Consensus 183 iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~-----~~qILgLTASpG~ 223 (746)
T KOG0354|consen 183 IVFDECHRTSKNHPYNNIMREYLDLKNQ-----GNQILGLTASPGS 223 (746)
T ss_pred EEEcccccccccccHHHHHHHHHHhhhc-----cccEEEEecCCCc
Confidence 9999999988766555555333333331 3599999999865
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=223.07 Aligned_cols=173 Identities=21% Similarity=0.306 Sum_probs=120.4
Q ss_pred ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccch-hhhhccchHH-HHHHHhcCCCccCCCCceeEEEEeeccChHH
Q psy8712 335 SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEAD-GLLKQGYGNL-IDRMHKQIPKITSDGKRLQMIVCSATLHDFD 412 (651)
Q Consensus 335 ~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD-~ll~~gf~~~-i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~ 412 (651)
....+|+++|||+|++.+.... .++++++||||||| ++++.+|.-. ++.++...+ +.|+|++|||++.
T Consensus 154 s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp-------dLKlIlmSATld~-- 223 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP-------DLKIIITSATIDP-- 223 (1283)
T ss_pred CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC-------CCeEEEEeCCcCH--
Confidence 3468999999999999887654 37999999999999 5888777543 555654443 4799999999964
Q ss_pred HHHHHHHhccCCeEEEccCCCCccC-------------------------------ceEEEEEEeCcchH--HHHHHHh-
Q psy8712 413 VKKMAERLMYFPTWVDLKGEDAVPE-------------------------------TVHHVVVKIDPQQD--ETWGRLR- 458 (651)
Q Consensus 413 v~~l~~~~l~~p~~i~~~~~~~~~~-------------------------------~i~~~~~~~~~~~~--~~~~~l~- 458 (651)
..+++.|...|. |.+.+.....+ .-..+++|++...+ .....+.
T Consensus 224 -~~fa~~F~~apv-I~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~ 301 (1283)
T TIGR01967 224 -ERFSRHFNNAPI-IEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRK 301 (1283)
T ss_pred -HHHHHHhcCCCE-EEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHh
Confidence 466666655443 33332211000 01235566655432 1111110
Q ss_pred -------------------------hccccceeeccccccCCCCCCCCCEEEEeCCCC------------------Chhh
Q psy8712 459 -------------------------SHIQTDGVHARDNARPGIDISGLPFIINMTLPD------------------DKAN 495 (651)
Q Consensus 459 -------------------------~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~------------------s~~~ 495 (651)
......++.+||.+++|||||+|++||++++|+ |..+
T Consensus 302 ~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkas 381 (1283)
T TIGR01967 302 RNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQAS 381 (1283)
T ss_pred cCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHH
Confidence 111236677899999999999999999999653 5679
Q ss_pred hhhhcCccccCCCceEEEEeeeCCc
Q psy8712 496 YVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 496 YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
|.||+|||||.+ .|.||.|+++++
T Consensus 382 a~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 382 ANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred HHHHhhhhCCCC-CceEEEecCHHH
Confidence 999999999997 999999999754
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=194.19 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=75.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH---Hhc-cCCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS---VLS-SGVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~---~L~-~~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
.++|||+|+++|+.|+++.+++... .++..+.++.+..+... .+. ..++|||||+..+. ..++
T Consensus 26 ~~vLvlvP~i~L~~Q~~~~l~~~f~------~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~ 92 (505)
T TIGR00595 26 KSVLVLVPEIALTPQMIQRFKYRFG------SQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFK 92 (505)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhC------CcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------Cccc
Confidence 3799999999999999999986532 56778888877654433 233 35799999998663 3578
Q ss_pred CcceEeeccchhhhhcc---ch---HHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 361 HCRFFVLDEADGLLKQG---YG---NLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~g---f~---~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
++++|||||+|....+. .. .++........ +.+++++|||.+.
T Consensus 93 ~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~-------~~~vil~SATPsl 141 (505)
T TIGR00595 93 NLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF-------NCPVVLGSATPSL 141 (505)
T ss_pred CCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc-------CCCEEEEeCCCCH
Confidence 99999999999876322 22 22333333332 5899999999654
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=198.57 Aligned_cols=221 Identities=15% Similarity=0.184 Sum_probs=137.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC--------Cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG--------HL 357 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~--------~l 357 (651)
.+|||||+.+|+.|..+.+.++.... ...+..+.|+.... .....+|+|+|...+.....+. .+
T Consensus 300 ~tLILvps~~Lv~QW~~ef~~~~~l~---~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l 371 (732)
T TIGR00603 300 SCLVLCTSAVSVEQWKQQFKMWSTID---DSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWL 371 (732)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCC---CceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHh
Confidence 48999999999999999999875322 24555566653321 1123689999998764322211 12
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHH--HH----------------HHHH-
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFD--VK----------------KMAE- 418 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~--v~----------------~l~~- 418 (651)
.-....+||+||||++-. +...+++..+.. ...+++|||+...+ +. ++.+
T Consensus 372 ~~~~~gLII~DEvH~lpA----~~fr~il~~l~a-------~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~ 440 (732)
T TIGR00603 372 TNREWGLILLDEVHVVPA----AMFRRVLTIVQA-------HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKK 440 (732)
T ss_pred ccccCCEEEEEccccccH----HHHHHHHHhcCc-------CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhC
Confidence 224677999999999854 334556666543 46799999985311 11 1111
Q ss_pred HhccCCe----EEEccCCC-----------------C----------cc----CceEEEEEEeCcch-------------
Q psy8712 419 RLMYFPT----WVDLKGED-----------------A----------VP----ETVHHVVVKIDPQQ------------- 450 (651)
Q Consensus 419 ~~l~~p~----~i~~~~~~-----------------~----------~~----~~i~~~~~~~~~~~------------- 450 (651)
.++.++. ++.+..+. . .. ..-++.+++++...
T Consensus 441 G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~~~~ 520 (732)
T TIGR00603 441 GFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLGKPF 520 (732)
T ss_pred CccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcCCce
Confidence 0111111 11111000 0 00 01235666665432
Q ss_pred ----------HHHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCC-CChhhhhhhcCccccCCCceEE-------
Q psy8712 451 ----------DETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLP-DDKANYVHRIGRVGRAERMGLA------- 512 (651)
Q Consensus 451 ----------~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP-~s~~~YihRiGR~GR~g~~G~a------- 512 (651)
...+..++.+-....+.+++...+|||+|++++||+++.| .|...|+||+||++|.+..|.+
T Consensus 521 I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~f 600 (732)
T TIGR00603 521 IYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFF 600 (732)
T ss_pred EECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceE
Confidence 1111122223345677888999999999999999999998 5999999999999999877665
Q ss_pred EEeeeCCcccccc
Q psy8712 513 ISLVSTVPEKVWY 525 (651)
Q Consensus 513 i~lv~~~de~~~~ 525 (651)
|+|++++.....|
T Consensus 601 Y~lVs~dT~E~~~ 613 (732)
T TIGR00603 601 YSLVSKDTQEMYY 613 (732)
T ss_pred EEEecCCchHHHH
Confidence 9999987555544
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-19 Score=195.85 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=97.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.++++-+|-++|.+|-++.|+.-.. .+.+++|+..... .+.++|+|.+.|.+|+-++.-.++++.+
T Consensus 341 TR~iYTSPIKALSNQKfRDFk~tF~-------DvgLlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~ 406 (1248)
T KOG0947|consen 341 TRTIYTSPIKALSNQKFRDFKETFG-------DVGLLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEF 406 (1248)
T ss_pred cceEecchhhhhccchHHHHHHhcc-------ccceeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccce
Confidence 3789999999999999988876432 2237888877544 4789999999999999998888899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
+|+||+|-+.|...+...++++-.||. ..++|++|||+| +..+|+.++-
T Consensus 407 VIFDEVHYiND~eRGvVWEEViIMlP~------HV~~IlLSATVP--N~~EFA~WIG 455 (1248)
T KOG0947|consen 407 VIFDEVHYINDVERGVVWEEVIIMLPR------HVNFILLSATVP--NTLEFADWIG 455 (1248)
T ss_pred EEEeeeeecccccccccceeeeeeccc------cceEEEEeccCC--ChHHHHHHhh
Confidence 999999999998888889999999998 699999999998 5667777653
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-18 Score=196.10 Aligned_cols=213 Identities=18% Similarity=0.190 Sum_probs=125.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---------------------HHhc---c---CC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---------------------SVLS---S---GV 338 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---------------------~~L~---~---~~ 338 (651)
++++..||+++++|+++.++.+.+..-. ..++.++.|........ ..+. + -.
T Consensus 333 gi~~aLPT~Atan~m~~Rl~~~~~~~f~-~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~lla 411 (878)
T PRK09694 333 SIIFALPTQATANAMLSRLEALASKLFP-SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLG 411 (878)
T ss_pred eEEEECcHHHHHHHHHHHHHHHHHHhcC-CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcC
Confidence 6889999999999999999875543211 23556666654321110 1111 1 16
Q ss_pred cEEEECchhhHH-HHhCCCcccCCc----ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHH
Q psy8712 339 DIVVGTPGRMED-LISGGHLSLTHC----RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDV 413 (651)
Q Consensus 339 dIlV~TP~rL~~-ll~~~~l~l~~l----~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v 413 (651)
+|+|||+.+++. .+..+...++.+ +.|||||+|.+ +.-....+..+++.+... ...+|++|||+|....
T Consensus 412 pi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-----g~~vIllSATLP~~~r 485 (878)
T PRK09694 412 QIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-----GGSVILLSATLPATLK 485 (878)
T ss_pred CEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHH
Confidence 999999988875 333322222222 48999999976 322334456666655442 4679999999997333
Q ss_pred HHHHHHhccC---------C-------------------------eEEEccCC---CCcc------------CceEEEEE
Q psy8712 414 KKMAERLMYF---------P-------------------------TWVDLKGE---DAVP------------ETVHHVVV 444 (651)
Q Consensus 414 ~~l~~~~l~~---------p-------------------------~~i~~~~~---~~~~------------~~i~~~~~ 444 (651)
..+.+.+-.. | ..+.+... ...+ ..-.++++
T Consensus 486 ~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLV 565 (878)
T PRK09694 486 QKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCL 565 (878)
T ss_pred HHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEE
Confidence 3444432110 0 01111000 0000 01123455
Q ss_pred EeCcchH--HHHHHH--------------------------------h-hccc---cceeeccccccCCCCCCCCCEEEE
Q psy8712 445 KIDPQQD--ETWGRL--------------------------------R-SHIQ---TDGVHARDNARPGIDISGLPFIIN 486 (651)
Q Consensus 445 ~~~~~~~--~~~~~l--------------------------------~-~~~~---~~~l~~td~~~rGIDip~v~~VIn 486 (651)
++++.++ +.+..+ + +..+ ..++++|+.+++|||| +++++|.
T Consensus 566 f~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlIt 644 (878)
T PRK09694 566 ICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLIT 644 (878)
T ss_pred EECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEE
Confidence 5554331 111111 1 1111 3578899999999999 5899999
Q ss_pred eCCCCChhhhhhhcCccccCCC
Q psy8712 487 MTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 487 ~dlP~s~~~YihRiGR~GR~g~ 508 (651)
...| .+.|+||+||+||.++
T Consensus 645 dlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 645 QLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCC--HHHHHHHHhccCCCCC
Confidence 9888 6899999999999986
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=159.91 Aligned_cols=136 Identities=32% Similarity=0.592 Sum_probs=109.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCC-cEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGV-DIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~-dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.+||++||+.++.|+.+.+..+..... .......++.........+..+. +|+++|++.+.+.+........++++
T Consensus 56 ~~l~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~ 132 (201)
T smart00487 56 RVLVLVPTRELAEQWAEELKKLGPSLG---LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDL 132 (201)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhccCC---eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCE
Confidence 589999999999999999988775432 34555666666556666666666 99999999999999887777888999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccC
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG 431 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~ 431 (651)
+||||||.+....+...+..++..++. ..+++++|||.++ .+......++.+...+....
T Consensus 133 iIiDE~h~~~~~~~~~~~~~~~~~~~~------~~~~v~~saT~~~-~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 133 VILDEAHRLLDGGFGDQLEKLLKLLPK------NVQLLLLSATPPE-EIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred EEEECHHHHhcCCcHHHHHHHHHhCCc------cceEEEEecCCch-hHHHHHHHhcCCCEEEeCCc
Confidence 999999999876678888888888754 5899999999986 88888888888766655543
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-18 Score=192.38 Aligned_cols=231 Identities=16% Similarity=0.240 Sum_probs=144.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-Cc-ccCCcc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HL-SLTHCR 363 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l-~l~~l~ 363 (651)
+.++++|+++|++.+...|.+-...+ +|+|.-++|......+. -++.+|+|+||+...-.-+++ .. ..+-++
T Consensus 366 KIVYIAPmKaLvqE~VgsfSkRla~~---GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvr 439 (1674)
T KOG0951|consen 366 KIVYIAPMKALVQEMVGSFSKRLAPL---GITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVR 439 (1674)
T ss_pred eEEEEeeHHHHHHHHHHHHHhhcccc---CcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHH
Confidence 68999999999998777665555444 49999999987643221 135799999999985444432 22 235689
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhccCCe-----------------
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLMYFPT----------------- 425 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~----------------- 425 (651)
++||||.|.+-| ..++.++.|..+.... ......++++++|||+|+ -.+.+.-+..+|.
T Consensus 440 LlIIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN--y~DV~~Fl~v~~~glf~fd~syRpvPL~qq 516 (1674)
T KOG0951|consen 440 LLIIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPN--YEDVASFLRVDPEGLFYFDSSYRPVPLKQQ 516 (1674)
T ss_pred HHhhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCc--hhhhHHHhccCcccccccCcccCcCCccce
Confidence 999999998765 4677777776554322 122236899999999984 4554443332221
Q ss_pred EEEccCCCCc----------------cCceEEEEEEeCcchH--------------------------------------
Q psy8712 426 WVDLKGEDAV----------------PETVHHVVVKIDPQQD-------------------------------------- 451 (651)
Q Consensus 426 ~i~~~~~~~~----------------~~~i~~~~~~~~~~~~-------------------------------------- 451 (651)
.|.+...+.. ...=+|++++|.++++
T Consensus 517 ~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~ 596 (1674)
T KOG0951|consen 517 YIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQ 596 (1674)
T ss_pred EeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhc
Confidence 1222211110 0011567777765541
Q ss_pred --------------------------HHHHHHhhccccceeeccccccCCCCCCCCCEEEE----eCC------CCChhh
Q psy8712 452 --------------------------ETWGRLRSHIQTDGVHARDNARPGIDISGLPFIIN----MTL------PDDKAN 495 (651)
Q Consensus 452 --------------------------~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~dl------P~s~~~ 495 (651)
...+.++.....+.+++|..+++|++.|.-+++|- ||. +.++.+
T Consensus 597 ~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~d 676 (1674)
T KOG0951|consen 597 AKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLD 676 (1674)
T ss_pred ccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHH
Confidence 11111233334555667777788999998776663 555 457899
Q ss_pred hhhhcCccccCCCc--eEEEEeeeCCccccccc
Q psy8712 496 YVHRIGRVGRAERM--GLAISLVSTVPEKVWYH 526 (651)
Q Consensus 496 YihRiGR~GR~g~~--G~ai~lv~~~de~~~~~ 526 (651)
-+||.||+||.+.. |..|. ++...|..+|.
T Consensus 677 v~qmlgragrp~~D~~gegii-it~~se~qyyl 708 (1674)
T KOG0951|consen 677 VMQMLGRAGRPQYDTCGEGII-ITDHSELQYYL 708 (1674)
T ss_pred HHHHHhhcCCCccCcCCceee-ccCchHhhhhH
Confidence 99999999997654 44443 33334444443
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-17 Score=187.54 Aligned_cols=118 Identities=19% Similarity=0.293 Sum_probs=97.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++++.+|.++|.+|.+..+........ -.+.+++|+.+... ++.++|+|.+.|.+++..+...+..+.+|
T Consensus 164 rviYTsPIKALsNQKyrdl~~~fgdv~---~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~V 233 (1041)
T COG4581 164 RVIYTSPIKALSNQKYRDLLAKFGDVA---DMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWV 233 (1041)
T ss_pred ceEeccchhhhhhhHHHHHHHHhhhhh---hhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceE
Confidence 589999999999999988765432111 23467788777543 57999999999999999998889999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
|+||+|.|-+...+...+.++-.+|. ..|++++|||++ +-.+|..++-
T Consensus 234 iFDEvHyi~D~eRG~VWEE~Ii~lP~------~v~~v~LSATv~--N~~EF~~Wi~ 281 (1041)
T COG4581 234 VFDEVHYIGDRERGVVWEEVIILLPD------HVRFVFLSATVP--NAEEFAEWIQ 281 (1041)
T ss_pred EEEeeeeccccccchhHHHHHHhcCC------CCcEEEEeCCCC--CHHHHHHHHH
Confidence 99999999998888888999999998 689999999998 5677777663
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=182.78 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=73.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC-Cccc----
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG-HLSL---- 359 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~-~l~l---- 359 (651)
.++||+||++||.|.++++..+.++++ +++.+++||.+...+.... .+||++|||++| .|+++.+ .+++
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~lG---Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v 199 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFLG---LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKV 199 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhcccC---ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhh
Confidence 488999999999999999999999886 9999999999887776554 589999999999 9999877 3444
Q ss_pred -CCcceEeeccchhhh
Q psy8712 360 -THCRFFVLDEADGLL 374 (651)
Q Consensus 360 -~~l~~lViDEaD~ll 374 (651)
..+.++||||||.||
T Consensus 200 ~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 200 QRELNFAIVDEVDSIL 215 (896)
T ss_pred ccccceEEeccHhhhh
Confidence 589999999999876
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=181.26 Aligned_cols=114 Identities=18% Similarity=0.328 Sum_probs=96.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|+-+|-++|.+|-|+.+..=.+ .|.+.+|+..... .+..+|+|.+.|..++-++.-.++.+..+
T Consensus 174 RVIYTSPIKALSNQKYREl~~EF~-------DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWV 239 (1041)
T KOG0948|consen 174 RVIYTSPIKALSNQKYRELLEEFK-------DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWV 239 (1041)
T ss_pred eEEeeChhhhhcchhHHHHHHHhc-------ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeE
Confidence 789999999999999988764332 3567888887544 47899999999999999998889999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
|+||+|-|-|...+-..+.-+-.||. +.+++++|||+| +..+|++|+.
T Consensus 240 IFDEIHYMRDkERGVVWEETIIllP~------~vr~VFLSATiP--NA~qFAeWI~ 287 (1041)
T KOG0948|consen 240 IFDEIHYMRDKERGVVWEETIILLPD------NVRFVFLSATIP--NARQFAEWIC 287 (1041)
T ss_pred EeeeehhccccccceeeeeeEEeccc------cceEEEEeccCC--CHHHHHHHHH
Confidence 99999999987777677777778888 799999999998 6788888764
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=181.08 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=73.5
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------ccc
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LSL 359 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l 359 (651)
+-|++||.+||.|.++++..+.++++ +++.+++|+.+..++.... .+||++|||++| .|+++.+. +.+
T Consensus 125 V~IvTpn~yLA~rd~e~~~~l~~~LG---lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~ 199 (830)
T PRK12904 125 VHVVTVNDYLAKRDAEWMGPLYEFLG---LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQ 199 (830)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhcC---CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcc
Confidence 56999999999999999999999886 9999999999988877765 489999999999 89998764 346
Q ss_pred CCcceEeeccchhhh
Q psy8712 360 THCRFFVLDEADGLL 374 (651)
Q Consensus 360 ~~l~~lViDEaD~ll 374 (651)
+.+.++||||||.||
T Consensus 200 r~~~~aIvDEaDsiL 214 (830)
T PRK12904 200 RGLNYAIVDEVDSIL 214 (830)
T ss_pred cccceEEEechhhhe
Confidence 889999999999876
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=180.36 Aligned_cols=84 Identities=12% Similarity=0.246 Sum_probs=68.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
++-|++||--||.|-++.+..+...++ +++.++.++.+..+..... .+||+.||...+ .|+++.+. ..
T Consensus 123 ~v~vvT~neyLA~Rd~e~~~~~~~~LG---l~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v 197 (796)
T PRK12906 123 GVHVVTVNEYLSSRDATEMGELYRWLG---LTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMV 197 (796)
T ss_pred CeEEEeccHHHHHhhHHHHHHHHHhcC---CeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhh
Confidence 678999999999999999999999886 9999999887776665544 579999999888 45665431 12
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
...+.+.||||+|.++
T Consensus 198 ~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 198 QRPLNYAIVDEVDSIL 213 (796)
T ss_pred ccCcceeeeccchhee
Confidence 4678899999999765
|
|
| >PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-17 Score=147.74 Aligned_cols=114 Identities=43% Similarity=0.693 Sum_probs=100.5
Q ss_pred CceeEEEEEeccCCceeeccccccc---cc--cCCCCCCCCCcCCCC-ccCCCcccCccCcccCC-CcccccccccCCce
Q psy8712 129 RGKYYYEATVTDEGLCRVGWSTSQA---VR--DLGTDRFGFGFGGTG-KKSNNKQFDNYGEAFGM-HDVIGCLLDLDNMT 201 (651)
Q Consensus 129 ~~~~~~e~~~~~~~~~~~~~~~~~~---~~--~~g~~~~~~~~gg~~-~ks~~~~~~~~g~~~~~-~d~ig~~~~~~~~~ 201 (651)
+|||||||+|.+.+.+++||++... .. -+|.+..+|+|.+.+ ++.++.....++.++.. +|+|||+||+++|+
T Consensus 1 sG~~YwEV~v~~~~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIG~~lD~~~g~ 80 (124)
T PF00622_consen 1 SGKHYWEVEVDSGGSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPGDVIGCGLDLDNGE 80 (124)
T ss_dssp SSEEEEEEEETGGCTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTTSEEEEEEETTTTE
T ss_pred CcCEEEEEEEecCcCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCCcEEEEEEeecccE
Confidence 5899999999999999999999999 22 288888999999999 78788888999999998 99999999999999
Q ss_pred eeeeccCcccc-cccc-cchhhhhccCcchhhcc-ccccccccCCCC
Q psy8712 202 VAFTKNGQHLG-LAFN-ISQQLKNSAFYPAVVLK-NAEMSFNFGATP 245 (651)
Q Consensus 202 ~~~~~ng~~~g-~af~-~~~~~~~~~~~p~~~~k-~~~~~~~f~~~~ 245 (651)
|+|++||+.++ .+|+ .+.. ..+||+|.+. +.++.+|||+.|
T Consensus 81 l~F~~ng~~~~~~~f~~~~~~---~~l~P~v~~~~~~~~~~n~g~~~ 124 (124)
T PF00622_consen 81 LSFYKNGKFLGIYAFTDIDFS---EPLYPAVSLGGGQSVELNFGQRP 124 (124)
T ss_dssp EEEEETTEEEEEEEEESCTTS---SSBEEEEEEESTSEEEEEEEC--
T ss_pred EEEEECCccceeEEEECCCCC---CcEEEEEEecCCCEEEEEeCCCC
Confidence 99999999999 7776 4433 7999999999 589999999875
|
Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A .... |
| >smart00449 SPRY Domain in SPla and the RYanodine Receptor | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-16 Score=143.38 Aligned_cols=113 Identities=42% Similarity=0.693 Sum_probs=99.1
Q ss_pred CceeEEEEEeccCCceeeccccccccc----cCCCCCCCCCcCCCC-ccCCCcccCccCcccCC-CcccccccccCCcee
Q psy8712 129 RGKYYYEATVTDEGLCRVGWSTSQAVR----DLGTDRFGFGFGGTG-KKSNNKQFDNYGEAFGM-HDVIGCLLDLDNMTV 202 (651)
Q Consensus 129 ~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~gg~~-~ks~~~~~~~~g~~~~~-~d~ig~~~~~~~~~~ 202 (651)
+|+|||||+|.+++.++|||++....+ .+|.+..||+|.+.+ ++-++.....|+.+|.. +|+|||+||+++|+|
T Consensus 1 sG~~YwEV~v~~~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd~iGv~lD~~~g~l 80 (122)
T smart00449 1 SGRHYFEVEIFDGGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGDVIGCFLDLEAGTI 80 (122)
T ss_pred CCcEEEEEEEcCCCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCCEEEEEEECCCCEE
Confidence 589999999999999999999998873 399999999999987 77777777889999997 999999999999999
Q ss_pred eeeccCccc-ccccccchhhhhccCcchhhcccc-ccccccCC
Q psy8712 203 AFTKNGQHL-GLAFNISQQLKNSAFYPAVVLKNA-EMSFNFGA 243 (651)
Q Consensus 203 ~~~~ng~~~-g~af~~~~~~~~~~~~p~~~~k~~-~~~~~f~~ 243 (651)
+|++||+.+ +.+|..-. -.+.+||++.+.+. ...+||+.
T Consensus 81 ~F~~ng~~~~~~~f~~~~--~~~~l~P~~~~~~~~~~~~n~g~ 121 (122)
T smart00449 81 SFYKNGKYLHGLAFFDVK--FSGPLYPAVSLGSGCSVRLNFGP 121 (122)
T ss_pred EEEECCCEeeeEEEeccC--CCCcEeeEEEcCCCCEEEEEecC
Confidence 999999999 88885432 34589999999886 57888874
|
Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues. |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=173.92 Aligned_cols=113 Identities=16% Similarity=0.034 Sum_probs=70.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-----CCccc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-----GHLSL 359 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-----~~l~l 359 (651)
.++|||+|+++|+.|..+.|+.+.... ......+++....... ......+|+|+|...+...+.. ....+
T Consensus 464 ~rVLfLvDR~~L~~Qa~~~F~~~~~~~---~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~ 538 (1123)
T PRK11448 464 RRILFLVDRSALGEQAEDAFKDTKIEG---DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPV 538 (1123)
T ss_pred CeEEEEecHHHHHHHHHHHHHhccccc---ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCC
Confidence 379999999999999999998764211 0111111111111111 1123579999999998775432 12456
Q ss_pred CCcceEeeccchhhhh---------cc------chHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 360 THCRFFVLDEADGLLK---------QG------YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~---------~g------f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
...++||+||||+-.. .+ +....+.++..+. .-.|+||||...
T Consensus 539 ~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--------A~~IGLTATP~r 596 (1123)
T PRK11448 539 DQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--------AVKIGLTATPAL 596 (1123)
T ss_pred CcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC--------ccEEEEecCCcc
Confidence 7889999999998531 01 1344566666442 467999999753
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=160.47 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=40.3
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCcccc
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
..+.++...++..|+|+|+++++|......|...|+||+||.=|
T Consensus 332 ~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 332 GIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 36677777888889999999999999999999999999999999
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=160.87 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=49.9
Q ss_pred cceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 463 TDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 463 ~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
..++.+|+...+|+|++.+++|||||+|.+++.|.||+||+||.|+++.+..++..
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 55677888899999999999999999999999999999999999999986655543
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-13 Score=153.76 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=71.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC-Cccc----
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG-HLSL---- 359 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~-~l~l---- 359 (651)
.+.||+|+++||.|..+++..+..+++ +++.++.++.+........ .+||++|||+++ .|+++.+ .+..
T Consensus 125 ~VhIvT~ndyLA~RD~e~m~~l~~~lG---lsv~~i~~~~~~~~r~~~Y--~~dI~YgT~~e~gfDyLrdnm~~~~~~~v 199 (908)
T PRK13107 125 GVHVITVNDYLARRDAENNRPLFEFLG---LTVGINVAGLGQQEKKAAY--NADITYGTNNEFGFDYLRDNMAFSPQERV 199 (908)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcC---CeEEEecCCCCHHHHHhcC--CCCeEEeCCCcccchhhhccCccchhhhh
Confidence 389999999999999999999999986 9999999998864433221 689999999999 8998876 3343
Q ss_pred -CCcceEeeccchhhh
Q psy8712 360 -THCRFFVLDEADGLL 374 (651)
Q Consensus 360 -~~l~~lViDEaD~ll 374 (651)
..+.++||||||.++
T Consensus 200 qr~~~~aIvDEvDsiL 215 (908)
T PRK13107 200 QRPLHYALIDEVDSIL 215 (908)
T ss_pred ccccceeeecchhhhc
Confidence 788999999999876
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=146.57 Aligned_cols=105 Identities=15% Similarity=0.237 Sum_probs=74.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH----hccCCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV----LSSGVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~----L~~~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
.++|||+|-..|-.|+.+.|+.... .++..+.++.+..+..+. ....+.|||||-..+ ...++
T Consensus 246 kqvLvLVPEI~Ltpq~~~rf~~rFg------~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~ 312 (730)
T COG1198 246 KQVLVLVPEIALTPQLLARFKARFG------AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFK 312 (730)
T ss_pred CEEEEEeccccchHHHHHHHHHHhC------CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchh
Confidence 4899999999999999999987664 677778887765444433 335689999994322 34689
Q ss_pred CcceEeeccchhhhh---ccc---hHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 361 HCRFFVLDEADGLLK---QGY---GNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 361 ~l~~lViDEaD~ll~---~gf---~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
++.+|||||-|.-.- .+. ..++--...... ++++|+-|||.+
T Consensus 313 ~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~-------~~pvvLgSATPS 360 (730)
T COG1198 313 NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE-------NAPVVLGSATPS 360 (730)
T ss_pred hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh-------CCCEEEecCCCC
Confidence 999999999995431 122 223333333332 589999999964
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.8e-13 Score=150.92 Aligned_cols=204 Identities=18% Similarity=0.207 Sum_probs=126.1
Q ss_pred CeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC--CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCc
Q psy8712 315 KIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG--GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI 392 (651)
Q Consensus 315 ~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~--~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~ 392 (651)
++.+...+|..+.... .+.-+|.|+|-|+-+.++.+ ..-+++.+.+||+||-|.+.+.+.+..++.++..+--.
T Consensus 297 G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred CCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 3777666666554433 23468999999988765543 12246788999999999999988888888777654322
Q ss_pred cCCCCceeEEEEeeccChHHHHHHHHHhcc-------CCeE-----------EEccC---------------CCCccCce
Q psy8712 393 TSDGKRLQMIVCSATLHDFDVKKMAERLMY-------FPTW-----------VDLKG---------------EDAVPETV 439 (651)
Q Consensus 393 ~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~-------~p~~-----------i~~~~---------------~~~~~~~i 439 (651)
.... ..|+|++|||+++ +..+..++-. .|+. +.... ....++.+
T Consensus 373 ~~~~-~~~iIGMSATi~N--~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~ 449 (1008)
T KOG0950|consen 373 NLET-SVQIIGMSATIPN--NSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHL 449 (1008)
T ss_pred cccc-ceeEeeeecccCC--hHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcce
Confidence 1111 3789999999984 4444433210 1111 00100 00011111
Q ss_pred -----------EEEEEEeCcchHH----------------------HHHHH-----------------------------
Q psy8712 440 -----------HHVVVKIDPQQDE----------------------TWGRL----------------------------- 457 (651)
Q Consensus 440 -----------~~~~~~~~~~~~~----------------------~~~~l----------------------------- 457 (651)
...+++|++++.. .|...
T Consensus 450 v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHh 529 (1008)
T KOG0950|consen 450 VGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHH 529 (1008)
T ss_pred eeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecc
Confidence 2356667665310 01111
Q ss_pred --------------hhccccceeeccccccCCCCCCCCCEEEEeCC----CCChhhhhhhcCccccCCC--ceEEEEeee
Q psy8712 458 --------------RSHIQTDGVHARDNARPGIDISGLPFIINMTL----PDDKANYVHRIGRVGRAER--MGLAISLVS 517 (651)
Q Consensus 458 --------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl----P~s~~~YihRiGR~GR~g~--~G~ai~lv~ 517 (651)
++......+.+|..++.|++.|..+++|-.-. +.+.-.|.|++|||||+|- .|.+|+++.
T Consensus 530 aGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k 609 (1008)
T KOG0950|consen 530 AGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIK 609 (1008)
T ss_pred cccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEee
Confidence 12222333445666777999999888886443 3477899999999999974 788999999
Q ss_pred CCcccccc
Q psy8712 518 TVPEKVWY 525 (651)
Q Consensus 518 ~~de~~~~ 525 (651)
+.+.+.|.
T Consensus 610 ~~e~~~~~ 617 (1008)
T KOG0950|consen 610 SSEKKRVR 617 (1008)
T ss_pred ccchhHHH
Confidence 88776665
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-12 Score=143.11 Aligned_cols=88 Identities=22% Similarity=0.344 Sum_probs=60.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
.+++||+||..|+.|+++.+++|+.......+.+. ..+..+.++.. ..+.+ +.||+|+|..-|...+.. +.-.
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~ 202 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKL 202 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hccc
Confidence 47999999999999999999999976553344444 34443443333 33333 689999998655443321 1113
Q ss_pred CcceEeeccchhhhh
Q psy8712 361 HCRFFVLDEADGLLK 375 (651)
Q Consensus 361 ~l~~lViDEaD~ll~ 375 (651)
+++++++|++|.++.
T Consensus 203 kFdfifVDDVDA~Lk 217 (1187)
T COG1110 203 KFDFIFVDDVDAILK 217 (1187)
T ss_pred CCCEEEEccHHHHHh
Confidence 678999999998764
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=117.68 Aligned_cols=144 Identities=31% Similarity=0.418 Sum_probs=108.0
Q ss_pred CCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH
Q psy8712 252 KDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM 331 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~ 331 (651)
++.+..+.+|+|||..+...+...... ....+++|++|++.|+.|..+.+...... .+.+..+.++.....+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE----GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC----CcEEEEEecCcchhHHH
Confidence 367899999999999988777333222 34579999999999999999998887754 26777777777666665
Q ss_pred HHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 332 SVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 332 ~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
.......+|+++|++.+...+...........++||||+|.+.................. ..+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~------~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK------DRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCc------cceEEEEeccC
Confidence 555678999999999998887776666678899999999999875443322112222222 57999999995
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-11 Score=121.05 Aligned_cols=202 Identities=15% Similarity=0.146 Sum_probs=120.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++.|.+|....|..++..++.-.. +..+.+++|+.+...+ .+++|+|...|+.+- +.++++
T Consensus 146 ~vciASPRvDVclEl~~Rlk~aF~-----~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~l 206 (441)
T COG4098 146 RVCIASPRVDVCLELYPRLKQAFS-----NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLL 206 (441)
T ss_pred eEEEecCcccchHHHHHHHHHhhc-----cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEE
Confidence 566777887778877777765433 2677889998876543 589999988887644 467899
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH-----------HHHhccCC----eEEEcc
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM-----------AERLMYFP----TWVDLK 430 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l-----------~~~~l~~p----~~i~~~ 430 (651)
||||+|..--. --+.+...++.-.+. +.-+|.+|||.+. ..+.- ..++.+.| ..+...
T Consensus 207 iIDEVDAFP~~-~d~~L~~Av~~ark~-----~g~~IylTATp~k-~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~ 279 (441)
T COG4098 207 IIDEVDAFPFS-DDQSLQYAVKKARKK-----EGATIYLTATPTK-KLERKILKGNLRILKLPARFHGKPLPVPKFVWIG 279 (441)
T ss_pred EEecccccccc-CCHHHHHHHHHhhcc-----cCceEEEecCChH-HHHHHhhhCCeeEeecchhhcCCCCCCCceEEec
Confidence 99999965321 112233333333221 4678999999875 33321 12222222 222111
Q ss_pred CCCC------ccC-----------ceEEEEEEeC---------------------------cchHHHHHHHhhcccccee
Q psy8712 431 GEDA------VPE-----------TVHHVVVKID---------------------------PQQDETWGRLRSHIQTDGV 466 (651)
Q Consensus 431 ~~~~------~~~-----------~i~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~l 466 (651)
.-.. .+. +-.-++++++ +..+......++..+.+.+
T Consensus 280 ~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lL 359 (441)
T COG4098 280 NWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLL 359 (441)
T ss_pred cHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEE
Confidence 1100 000 0011222322 2222222233556677888
Q ss_pred eccccccCCCCCCCCCEEEE-eCCC-CChhhhhhhcCccccCCC--ceEEE
Q psy8712 467 HARDNARPGIDISGLPFIIN-MTLP-DDKANYVHRIGRVGRAER--MGLAI 513 (651)
Q Consensus 467 ~~td~~~rGIDip~v~~VIn-~dlP-~s~~~YihRiGR~GR~g~--~G~ai 513 (651)
..|..++||+.+|+|+++|. -.-+ .+-++.+|-.||+||.-. .|.++
T Consensus 360 iTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~ 410 (441)
T COG4098 360 ITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVL 410 (441)
T ss_pred EEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEE
Confidence 88999999999999997554 3322 467899999999999743 44444
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-11 Score=138.70 Aligned_cols=173 Identities=24% Similarity=0.309 Sum_probs=111.2
Q ss_pred CCcEEEECchhhHHHHhCCCcccCCcceEeeccchh-hhhccc-hHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHH
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADG-LLKQGY-GNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVK 414 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~-ll~~gf-~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~ 414 (651)
...|-+.|.|.|+..+..... |+.+++|||||||. -++..+ ...++.++...+. +..+|++|||+.. +
T Consensus 139 ~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~------DLKiIimSATld~---~ 208 (845)
T COG1643 139 RTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD------DLKLIIMSATLDA---E 208 (845)
T ss_pred CceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC------CceEEEEecccCH---H
Confidence 568999999999998876554 79999999999994 333222 1224455555554 4899999999965 5
Q ss_pred HHHHHhccCCeEEEccCCCCc----------cCc-----------------eEEEEEEeCcch--HHHHHHHh-------
Q psy8712 415 KMAERLMYFPTWVDLKGEDAV----------PET-----------------VHHVVVKIDPQQ--DETWGRLR------- 458 (651)
Q Consensus 415 ~l~~~~l~~p~~i~~~~~~~~----------~~~-----------------i~~~~~~~~~~~--~~~~~~l~------- 458 (651)
+|.+.|-.-| .+.+.+.... .+. --.+++|.+... +.....+.
T Consensus 209 rfs~~f~~ap-vi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~ 287 (845)
T COG1643 209 RFSAYFGNAP-VIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDD 287 (845)
T ss_pred HHHHHcCCCC-EEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCC
Confidence 5555443322 2333222110 000 011344443322 11111111
Q ss_pred ----------------------hccccceeeccccccCCCCCCCCCEEEEeCC------------------CCChhhhhh
Q psy8712 459 ----------------------SHIQTDGVHARDNARPGIDISGLPFIINMTL------------------PDDKANYVH 498 (651)
Q Consensus 459 ----------------------~~~~~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~Yih 498 (651)
...+-.++.+|+.+..+|-||+|.+||.-++ |.|..+..|
T Consensus 288 ~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~Q 367 (845)
T COG1643 288 LEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQ 367 (845)
T ss_pred cEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhh
Confidence 1111236778999999999999999997555 447788999
Q ss_pred hcCccccCCCceEEEEeeeCCcc
Q psy8712 499 RIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 499 RiGR~GR~g~~G~ai~lv~~~de 521 (651)
|.||+||- ..|.||-++++++.
T Consensus 368 RaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 368 RAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred hccccccC-CCceEEEecCHHHH
Confidence 99999998 67999999997543
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-12 Score=134.14 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=126.7
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcc----cCCcceEeeccchhhhhccchH----HHHHHHhcCCCcc
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLS----LTHCRFFVLDEADGLLKQGYGN----LIDRMHKQIPKIT 393 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~----l~~l~~lViDEaD~ll~~gf~~----~i~~il~~lp~~~ 393 (651)
+.|.+......-.+.+..++.+.|..+...+-.+.+. +-...+++.||+|..+.. |.. +++.+++.+.-.
T Consensus 369 ~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F- 446 (1034)
T KOG4150|consen 369 SDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGF- 446 (1034)
T ss_pred ccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHH-
Confidence 4444444444555678999999998886644433332 345678999999976542 222 333333332211
Q ss_pred CCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcc------------------------
Q psy8712 394 SDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQ------------------------ 449 (651)
Q Consensus 394 ~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~------------------------ 449 (651)
..+.+.|++-+|||+.+ .++.....+ +...+.+...+-.|..-++++++-++.
T Consensus 447 ~~~~~~~~~~~~~~~K~-~~~~~~~~~--~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~ 523 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKD-RTRLRSELA--NLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ 523 (1034)
T ss_pred HhhcCcceEeCCCCcCC-HHHHHHHhc--CCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH
Confidence 11236899999999986 555444433 222333333334444445555543321
Q ss_pred ------------hH-HHHHHH---------------------------hhc-------cccceeeccccccCCCCCCCCC
Q psy8712 450 ------------QD-ETWGRL---------------------------RSH-------IQTDGVHARDNARPGIDISGLP 482 (651)
Q Consensus 450 ------------~~-~~~~~l---------------------------~~~-------~~~~~l~~td~~~rGIDip~v~ 482 (651)
+- +++..+ ++. .+..++.+|+.+.-||||..++
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LD 603 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLD 603 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccce
Confidence 10 000000 111 2334566788999999999999
Q ss_pred EEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccc
Q psy8712 483 FIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYH 526 (651)
Q Consensus 483 ~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~ 526 (651)
.|++.++|-|..++.|+.||+||..+...++.++...+-..+|.
T Consensus 604 AVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 604 AVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred eEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 99999999999999999999999999999999888777666664
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=118.90 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=68.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEE------------EEeCCccHHHHHHHhccCCcEEEECchhhHHHHh
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIREL------------LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS 353 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~------------~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~ 353 (651)
+++|++|+..|+.|..+.+..+.... .... ..............-....++++.|...+.....
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 127 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSEK----YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIK 127 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTTS----EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHH
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhhh----hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcc
Confidence 58999999999999999997765432 1111 0111111122222334568999999999987664
Q ss_pred CCC-----------cccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 354 GGH-----------LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 354 ~~~-----------l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
... .......+||+||||++....- ...++. .+ ...+|++|||..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~-~~-------~~~~l~lTATp~ 183 (184)
T PF04851_consen 128 EEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE-FK-------AAFILGLTATPF 183 (184)
T ss_dssp H---------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH-SS-------CCEEEEEESS-S
T ss_pred cccccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc-CC-------CCeEEEEEeCcc
Confidence 321 2245678999999999876431 344444 22 468999999975
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-11 Score=141.09 Aligned_cols=223 Identities=16% Similarity=0.157 Sum_probs=122.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH-----h---------ccCCcEEEECchhhHH
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV-----L---------SSGVDIVVGTPGRMED 350 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~-----L---------~~~~dIlV~TP~rL~~ 350 (651)
++.+.+.|++.+..++++.++....... +......|.......... . .....+.++||-.+..
T Consensus 247 ~r~i~vlP~~t~ie~~~~r~~~~~~~~~---~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~ 323 (733)
T COG1203 247 SRVIYVLPFRTIIEDMYRRAKEIFGLFS---VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILI 323 (733)
T ss_pred ceEEEEccHHHHHHHHHHHHHhhhcccc---cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhh
Confidence 4789999999999999999998765432 111111222111110000 0 0124555666655444
Q ss_pred HHhC-CCcc-c--CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeE
Q psy8712 351 LISG-GHLS-L--THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW 426 (651)
Q Consensus 351 ll~~-~~l~-l--~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~ 426 (651)
.... .... + =....+|+||+|.+-+......+..++..+... +..+|++|||+|+ ...+.......+...
T Consensus 324 ~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~-----g~~ill~SATlP~-~~~~~l~~~~~~~~~ 397 (733)
T COG1203 324 FSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEA-----GVPVLLMSATLPP-FLKEKLKKALGKGRE 397 (733)
T ss_pred hhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhC-----CCCEEEEecCCCH-HHHHHHHHHHhcccc
Confidence 2111 1111 1 123589999999887653333444555544432 5799999999998 555555544432221
Q ss_pred EEcc-------------CC------CC--------cc---CceEEEEEEeCcch--HHHHHHHh----------------
Q psy8712 427 VDLK-------------GE------DA--------VP---ETVHHVVVKIDPQQ--DETWGRLR---------------- 458 (651)
Q Consensus 427 i~~~-------------~~------~~--------~~---~~i~~~~~~~~~~~--~~~~~~l~---------------- 458 (651)
+... .. .. .. ..-..+.+.+++.. .+.+..++
T Consensus 398 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~ 477 (733)
T COG1203 398 VVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLK 477 (733)
T ss_pred eeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchh
Confidence 1111 00 00 00 00012233333322 12222221
Q ss_pred -------------hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC--CceEEEEeeeCC
Q psy8712 459 -------------SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE--RMGLAISLVSTV 519 (651)
Q Consensus 459 -------------~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g--~~G~ai~lv~~~ 519 (651)
......++++|.+...|+|+. .+.+|-= +..+.+.+||.||++|.| ..|.++.+....
T Consensus 478 dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 478 DREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred hHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 334556677888888899986 5666544 444889999999999999 577777776653
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-09 Score=120.59 Aligned_cols=172 Identities=24% Similarity=0.334 Sum_probs=105.4
Q ss_pred CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhh-hhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHH
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGL-LKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVK 414 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~l-l~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~ 414 (651)
...|...|-|.|+..+.... .|++..+|||||||.= +..+ ....++++++.-+ ...+|++|||+.. .
T Consensus 140 ~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~-------~LklIimSATlda---~ 208 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRP-------DLKLIIMSATLDA---E 208 (674)
T ss_pred ceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCC-------CceEEEEeeeecH---H
Confidence 36899999999987554332 3688999999999941 1100 1122444444433 3799999999963 4
Q ss_pred HHHHHhccCCeEEEccCCCCccC--------------------ceE------EEEEEeCcchH--HHHHHHh--------
Q psy8712 415 KMAERLMYFPTWVDLKGEDAVPE--------------------TVH------HVVVKIDPQQD--ETWGRLR-------- 458 (651)
Q Consensus 415 ~l~~~~l~~p~~i~~~~~~~~~~--------------------~i~------~~~~~~~~~~~--~~~~~l~-------- 458 (651)
.|.+.|. +...+.+.+.....+ .|+ ..++|....++ .....+.
T Consensus 209 kfS~yF~-~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~ 287 (674)
T KOG0922|consen 209 KFSEYFN-NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPE 287 (674)
T ss_pred HHHHHhc-CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccc
Confidence 4555443 322233332211000 011 23444443321 1111110
Q ss_pred -------------------------hccccceeeccccccCCCCCCCCCEEEEeCC------------------CCChhh
Q psy8712 459 -------------------------SHIQTDGVHARDNARPGIDISGLPFIINMTL------------------PDDKAN 495 (651)
Q Consensus 459 -------------------------~~~~~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~ 495 (651)
......++.+|+.+..-|-|++|.+||.-++ |-|..+
T Consensus 288 ~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkas 367 (674)
T KOG0922|consen 288 DCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKAS 367 (674)
T ss_pred cCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHH
Confidence 0112345667888888999999999997444 557888
Q ss_pred hhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 496 YVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 496 YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
-.||.||+||. ..|.|+-|+++++-
T Consensus 368 A~QRaGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 368 ANQRAGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred HhhhcccCCCC-CCceEEEeeeHHHH
Confidence 99999999998 57999999997543
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=9e-10 Score=124.43 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=67.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
++-|++||-.||.|-++++..+...++ +++.++.++.+..+..... .+||+.+|...+ .|+|+.+. ..
T Consensus 121 ~VhvvT~NdyLA~RDae~m~~ly~~LG---Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v 195 (764)
T PRK12326 121 RVHVITVNDYLARRDAEWMGPLYEALG---LTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLV 195 (764)
T ss_pred CeEEEcCCHHHHHHHHHHHHHHHHhcC---CEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhc
Confidence 578999999999999999999998886 9999999988876655554 489999999887 45555432 23
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
...+.+.||||+|.+|
T Consensus 196 ~R~~~faIVDEvDSiL 211 (764)
T PRK12326 196 SPNPDVAIIDEADSVL 211 (764)
T ss_pred CCccceeeecchhhhe
Confidence 4668899999999876
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-10 Score=135.58 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=44.9
Q ss_pred CHHHHHHHHHcCCCCCcHHHHhhHH----hHhcCCceEeeecCCCCccceeehhhHH
Q psy8712 10 LPEIGKAVEEMDWLLPTDVQAEAIP----LILGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 10 ~~~l~~~l~~~~~~~pt~iQ~~aip----~il~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.+++.+.+...||. ++|.|.+.+. .+..|+++++.||||+|||+||++|++.
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~ 287 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALY 287 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHH
Confidence 35677888889997 7899998776 4557899999999999999999999986
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG2626|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-11 Score=128.00 Aligned_cols=157 Identities=32% Similarity=0.623 Sum_probs=126.2
Q ss_pred ceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEe---ccCCceeecccccccccc--CCCCCC
Q psy8712 88 TWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATV---TDEGLCRVGWSTSQAVRD--LGTDRF 162 (651)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~~~~~--~g~~~~ 162 (651)
++-|+-.+|....-|+.|.+ +.-..+++.=.|+++||. +|-.|||++| .|++-.|.|||...+.+. +|.|++
T Consensus 292 tv~l~~hdrA~ql~Is~drl--t~tgeKGy~MvRAshgv~-~G~WYFEI~vd~~pd~~a~RlGwsq~~g~LqApvGYdkf 368 (544)
T KOG2626|consen 292 TVNLSWHDRAEQLKISEDRL--TATGEKGYRMVRASHGVL-EGAWYFEIKVDEMPDDAAIRLGWSQLYGNLQAPVGYDKF 368 (544)
T ss_pred hhhhhhhcccccccccccce--eeecccceeeeeeccccc-ccceeEEEEeecCCCccceeeeccccccccccccccccc
Confidence 56666677777777766644 334567788899999998 8999999998 689999999999999999 999999
Q ss_pred CCCcCC-CCccCCCcccCccCcccCCCccccccccc--CC----------------------------------------
Q psy8712 163 GFGFGG-TGKKSNNKQFDNYGEAFGMHDVIGCLLDL--DN---------------------------------------- 199 (651)
Q Consensus 163 ~~~~gg-~~~ks~~~~~~~~g~~~~~~d~ig~~~~~--~~---------------------------------------- 199 (651)
||++-+ -|.|-|...=++|-..|+.||||||+|++ +.
T Consensus 369 sY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l~~~ 448 (544)
T KOG2626|consen 369 SYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTLKIK 448 (544)
T ss_pred cccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhccccC
Confidence 998865 36677777778999999999999999985 21
Q ss_pred --ceeeeeccCcccccccccchhhhhccCcchhhccc-cccccccCCCCCCCCC
Q psy8712 200 --MTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKN-AEMSFNFGATPFKHEP 250 (651)
Q Consensus 200 --~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~-~~~~~~f~~~~~~~~~ 250 (651)
..|.|-|||...|.||+---. .-..||||.+=+ ++++||||.. |+++|
T Consensus 449 pgS~I~f~KNG~~qG~Ay~ni~~--~G~YyPaIS~yks~tv~~nfGP~-F~~~p 499 (544)
T KOG2626|consen 449 PGSEIEFFKNGVSQGVAYENIYK--AGAYYPAISIYKSCTVKFNFGPQ-FRYPP 499 (544)
T ss_pred CCceEEEeecccchhhhhhhhhc--cccccceeeecccceEEEecccc-ccCCc
Confidence 257889999999999985321 237899998866 9999999853 55554
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-10 Score=129.01 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=30.6
Q ss_pred cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh
Q psy8712 336 SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK 375 (651)
Q Consensus 336 ~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~ 375 (651)
..+||||++..-|...++.+.-.+....++||||||.+.+
T Consensus 181 ~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 3579999999888776554332456689999999999875
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-09 Score=123.44 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=68.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
++-|++||.-||.|-++++..+..+++ +++.++.++.+..+...... +||++||..-+ .|+|+.+. ..
T Consensus 125 ~VhvvT~ndyLA~RD~e~m~~l~~~lG---l~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~v 199 (913)
T PRK13103 125 GVHVVTVNDYLARRDANWMRPLYEFLG---LSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKF 199 (913)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhcccC---CEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhc
Confidence 578999999999999999999998886 99999998887766655554 89999999886 44454431 12
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
.+.+.+.||||+|.+|
T Consensus 200 qr~l~~aIVDEvDsiL 215 (913)
T PRK13103 200 QRELNFAVIDEVDSIL 215 (913)
T ss_pred ccccceeEechhhhee
Confidence 4789999999999875
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.9e-10 Score=133.10 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q 330 (651)
.++.|+.+.||-|||.++++++.- ..-.+.-+-|++..--||..=.+++..+..+++ ++|.++..+.+....
T Consensus 151 h~G~IAEM~TGEGKTLvatlp~yL-----nAL~G~gVHvVTvNDYLA~RDaewm~p~y~flG---LtVg~i~~~~~~~~R 222 (1025)
T PRK12900 151 HSGKISEMATGEGKTLVSTLPTFL-----NALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHG---LSVGVILNTMRPEER 222 (1025)
T ss_pred hcCCccccCCCCCcchHhHHHHHH-----HHHcCCCcEEEeechHhhhhhHHHHHHHHHHhC---CeeeeeCCCCCHHHH
Confidence 468899999999999999887611 122344577889999999999999999888886 999999777666554
Q ss_pred HHHhccCCcEEEECchhh-HHHHhCCC------cccCCcceEeeccchhhh
Q psy8712 331 MSVLSSGVDIVVGTPGRM-EDLISGGH------LSLTHCRFFVLDEADGLL 374 (651)
Q Consensus 331 ~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l~~l~~lViDEaD~ll 374 (651)
.... .+||..||..-+ .|+|+.+. +....+.+.||||+|.+|
T Consensus 223 r~aY--~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 223 REQY--LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HHhC--CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 4332 589999998877 55665432 234678899999999765
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=116.77 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=48.1
Q ss_pred cceeeccccccCCCCCCCCCEEEEeCC------------------CCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 463 TDGVHARDNARPGIDISGLPFIINMTL------------------PDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 463 ~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
..+|++|+.+..-|.||++.+||..+. |-|..+--||.|||||. ..|.||-++++...
T Consensus 624 RK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt-~pG~cYRlYTe~ay 699 (1042)
T KOG0924|consen 624 RKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRT-GPGTCYRLYTEDAY 699 (1042)
T ss_pred eeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCC-CCcceeeehhhhHH
Confidence 356788999999999999999997554 55667778999999998 57999999997533
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.9e-09 Score=119.03 Aligned_cols=113 Identities=18% Similarity=0.274 Sum_probs=76.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC---CcccCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG---HLSLTHC 362 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~---~l~l~~l 362 (651)
-+|.++||++|+.|+...+........ -.+...+.|....+-+.. .-+|+|+|+-|+.+..++.+. .-..+++
T Consensus 558 VVIyvaPtKaLVnQvsa~VyaRF~~~t--~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerI 633 (1330)
T KOG0949|consen 558 VVIYVAPTKALVNQVSANVYARFDTKT--FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERI 633 (1330)
T ss_pred EEEEecchHHHhhhhhHHHHHhhccCc--cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcc
Confidence 578999999999999877654432111 023334444444333332 226999999999999988773 3346899
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+++|+||+|++-...-.--.++++... .+.++++|||+.+
T Consensus 634 RyiIfDEVH~iG~~ed~l~~Eqll~li--------~CP~L~LSATigN 673 (1330)
T KOG0949|consen 634 RYIIFDEVHLIGNEEDGLLWEQLLLLI--------PCPFLVLSATIGN 673 (1330)
T ss_pred eEEEechhhhccccccchHHHHHHHhc--------CCCeeEEecccCC
Confidence 999999999987643333344444444 3789999999974
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=127.50 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=33.8
Q ss_pred CCCCCcHHHHhhHHhH----hcCCceEeeecCCCCccceeehhhHH
Q psy8712 21 DWLLPTDVQAEAIPLI----LGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
|| .+.+-|.+....| ..++.+++.|+||||||+||++|+++
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~ 287 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLA 287 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHH
Confidence 44 5899999955444 36788999999999999999999886
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-08 Score=108.18 Aligned_cols=168 Identities=23% Similarity=0.304 Sum_probs=99.9
Q ss_pred CcEEEECchhhHHHHhCCCcccCCcceEeeccchhh-hhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHH
Q psy8712 338 VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGL-LKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKK 415 (651)
Q Consensus 338 ~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~l-l~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~ 415 (651)
.-|=++|-|.|+.-+.. ..+|.+...+||||||.= +... ....++.|.+.-| ...+++.|||+.. ..
T Consensus 356 TvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp-------dLKllIsSAT~DA---ek 424 (902)
T KOG0923|consen 356 TVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP-------DLKLLISSATMDA---EK 424 (902)
T ss_pred eeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC-------cceEEeeccccCH---HH
Confidence 46778999999774432 234678899999999941 2111 1123444444433 4899999999954 55
Q ss_pred HHHHhccCCeEEEccCCCCc-----------------cCce---------EEEEEEeCcchH---------HHHHHH---
Q psy8712 416 MAERLMYFPTWVDLKGEDAV-----------------PETV---------HHVVVKIDPQQD---------ETWGRL--- 457 (651)
Q Consensus 416 l~~~~l~~p~~i~~~~~~~~-----------------~~~i---------~~~~~~~~~~~~---------~~~~~l--- 457 (651)
|...|-.-|+.. +.+.... -.+| -.++++..-.++ +....|
T Consensus 425 FS~fFDdapIF~-iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGsk 503 (902)
T KOG0923|consen 425 FSAFFDDAPIFR-IPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSK 503 (902)
T ss_pred HHHhccCCcEEe-ccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccc
Confidence 555443333321 1111100 0011 113333322211 111111
Q ss_pred ---------------------h---hccccceeeccccccCCCCCCCCCEEEEeCC------------------CCChhh
Q psy8712 458 ---------------------R---SHIQTDGVHARDNARPGIDISGLPFIINMTL------------------PDDKAN 495 (651)
Q Consensus 458 ---------------------~---~~~~~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~ 495 (651)
+ ...-..++.+|+.+..-|.|++|.+||.-++ |-|..+
T Consensus 504 i~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAs 583 (902)
T KOG0923|consen 504 IRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKAS 583 (902)
T ss_pred cceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhh
Confidence 0 0011345667889999999999999997554 446677
Q ss_pred hhhhcCccccCCCceEEEEeeeC
Q psy8712 496 YVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 496 YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
-.||.||+||.| .|.|+-|++.
T Consensus 584 A~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 584 ANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred hhhhccccCCCC-CCceEEeech
Confidence 899999999985 6999999985
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-08 Score=115.09 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=47.2
Q ss_pred CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhh-hccchH-HHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLL-KQGYGN-LIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll-~~gf~~-~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
...++.+|.|.|++.+.. .-.+..+.++|+||+|.=. +..|.- .++.++..-| ..++|++|||+..
T Consensus 264 ~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p-------~LkvILMSAT~da 331 (924)
T KOG0920|consen 264 ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP-------DLKVILMSATLDA 331 (924)
T ss_pred ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC-------CceEEEeeeecch
Confidence 378999999999998877 4457899999999999532 223322 2333333333 5899999999963
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-08 Score=114.64 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=55.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-----Cccc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-----HLSL 359 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-----~l~l 359 (651)
.++|+|+-.+.|+.|.+..+..+..... ..+...-..+.. .++|.|+|-.++...+... .+..
T Consensus 216 KRVLFLaDR~~Lv~QA~~af~~~~P~~~--~~n~i~~~~~~~----------s~~i~lsTyqt~~~~~~~~~~~~~~f~~ 283 (875)
T COG4096 216 KRVLFLADRNALVDQAYGAFEDFLPFGT--KMNKIEDKKGDT----------SSEIYLSTYQTMTGRIEQKEDEYRRFGP 283 (875)
T ss_pred heeeEEechHHHHHHHHHHHHHhCCCcc--ceeeeecccCCc----------ceeEEEeehHHHHhhhhccccccccCCC
Confidence 3799999999999999999887765432 122111111111 3799999999998776544 4456
Q ss_pred CCcceEeeccchhhh
Q psy8712 360 THCRFFVLDEADGLL 374 (651)
Q Consensus 360 ~~l~~lViDEaD~ll 374 (651)
...++|||||||+=+
T Consensus 284 g~FDlIvIDEaHRgi 298 (875)
T COG4096 284 GFFDLIVIDEAHRGI 298 (875)
T ss_pred CceeEEEechhhhhH
Confidence 679999999999854
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-08 Score=115.94 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=46.6
Q ss_pred eeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce--EEEEeeeCC--cccc
Q psy8712 466 VHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG--LAISLVSTV--PEKV 523 (651)
Q Consensus 466 l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G--~ai~lv~~~--de~~ 523 (651)
|.++.....|||+..+++||+||+|-++..+.|++||+-|-|... .++.|++.. ++++
T Consensus 544 LLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkI 605 (1033)
T PLN03142 544 LLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKV 605 (1033)
T ss_pred EEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHH
Confidence 334555555999999999999999999999999999999999864 466677765 4444
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=116.78 Aligned_cols=138 Identities=15% Similarity=0.147 Sum_probs=97.0
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeC--cchHHHHHHHhhccccceeeccccccCC
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID--PQQDETWGRLRSHIQTDGVHARDNARPG 475 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~l~~~~~~~~l~~td~~~rG 475 (651)
..++++|+.|.. ....+.+.+.... +.-.+++-+ ...+.....-.+.....++++++.+.+|
T Consensus 446 g~~viIf~~t~~--~ae~L~~~L~~~g--------------i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 446 GERVLVTTLTKR--MAEDLTDYLKELG--------------IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred CCEEEEEeCCHH--HHHHHHHHHhhcc--------------eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 468888888864 5666666553321 222222221 2222222223345567888999999999
Q ss_pred CCCCCCCEEEEeCC-----CCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCC
Q psy8712 476 IDISGLPFIINMTL-----PDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQ 550 (651)
Q Consensus 476 IDip~v~~VIn~dl-----P~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 550 (651)
+|+|++++||++|. |.+..+|+||+|||||. +.|.|++|++..+... .++.
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~--------------------~~~~--- 565 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSM--------------------QKAI--- 565 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHH--------------------HHHH---
Confidence 99999999999985 78999999999999997 7899999998532211 1111
Q ss_pred cchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccccc
Q psy8712 551 VPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 551 ~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
+|...+++||..+|.++..+|..+.
T Consensus 566 ------------------~~~~~~~~i~~~~~~~~~~~~~~~~ 590 (652)
T PRK05298 566 ------------------DETERRREIQIAYNEEHGITPKTIK 590 (652)
T ss_pred ------------------HHHHHHHHHHHHhhhccCCCChhHH
Confidence 6889999999999999998887653
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=114.55 Aligned_cols=107 Identities=13% Similarity=0.166 Sum_probs=66.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc-CCcEEEECchhhHHHHhCC--CcccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGG--HLSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~--~l~l~ 360 (651)
.+++|||+|+.+|..|+.+.+..++... + .+..+...-...+.+ ..+|+|+|.+.+...+... .+...
T Consensus 293 ~~~vl~lvdR~~L~~Q~~~~f~~~~~~~----~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~ 363 (667)
T TIGR00348 293 NPKVFFVVDRRELDYQLMKEFQSLQKDC----A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVD 363 (667)
T ss_pred CCeEEEEECcHHHHHHHHHHHHhhCCCC----C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCC
Confidence 3589999999999999999999886311 1 111122222233333 4689999999997644321 11111
Q ss_pred Cc-ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 361 HC-RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 361 ~l-~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
+- -+||+||||+.-...+. ..+.+.+|. ...++||||.-
T Consensus 364 ~~~~lvIvDEaHrs~~~~~~---~~l~~~~p~-------a~~lGfTaTP~ 403 (667)
T TIGR00348 364 RKEVVVIFDEAHRSQYGELA---KNLKKALKN-------ASFFGFTGTPI 403 (667)
T ss_pred CCCEEEEEEcCccccchHHH---HHHHhhCCC-------CcEEEEeCCCc
Confidence 11 28999999986432222 222345554 68999999974
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-07 Score=105.85 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=64.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------ccc
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LSL 359 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l 359 (651)
+-|++..--||..=.+++..+..+++ ++|.++..+.+..+..... .+||+.||...| .|+|+.+. ...
T Consensus 122 VhVVTvNdYLA~RDae~mg~vy~fLG---LsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vq 196 (925)
T PRK12903 122 VIVSTVNEYLAERDAEEMGKVFNFLG---LSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQ 196 (925)
T ss_pred eEEEecchhhhhhhHHHHHHHHHHhC---CceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcC
Confidence 56778888899988899988888886 9999998887766655444 489999999887 56666542 224
Q ss_pred CCcceEeeccchhhh
Q psy8712 360 THCRFFVLDEADGLL 374 (651)
Q Consensus 360 ~~l~~lViDEaD~ll 374 (651)
..+.+.||||+|.+|
T Consensus 197 R~~~faIVDEVDSIL 211 (925)
T PRK12903 197 RGLNFCLIDEVDSIL 211 (925)
T ss_pred cccceeeeccchhee
Confidence 678899999999765
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.9e-09 Score=85.61 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=45.5
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
+......++.+|+.+..|||+|++++||++++|.++..|.|++||+||.|
T Consensus 29 f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 29 FNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred hhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 44445588999999999999999999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.6e-08 Score=111.01 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=74.6
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEe--CcchHHHHHHHhhccccceeeccccccCC
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKI--DPQQDETWGRLRSHIQTDGVHARDNARPG 475 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~td~~~rG 475 (651)
..++++|+.|.. ....+.+.+.... +.-.+.+- +..++.....-.+.....++++++.+.+|
T Consensus 442 g~~vLIf~~tk~--~ae~L~~~L~~~g--------------i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 442 NERVLVTTLTKK--MAEDLTDYLKELG--------------IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred CCEEEEEECCHH--HHHHHHHHHhhhc--------------cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 467888888763 5666665543221 11111211 12222222233445567889999999999
Q ss_pred CCCCCCCEEEEeC-----CCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 476 IDISGLPFIINMT-----LPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 476 IDip~v~~VIn~d-----lP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
+|+|++++||++| .|.+..+|+||+|||||. ..|.+++++...
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 9999999999999 899999999999999998 689999999864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-07 Score=102.74 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=84.9
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCC-eEEEEeCCHHHHHHHHHH-HHHhhccCCCCCeeEEEEeCCccHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAP-QAIIIEPSRELAEQTFNQ-IIKFKKFITDPKIRELLIIGGVNVK 328 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p-~aLIL~PTreLa~Qi~~~-~~~l~~~~~~~~i~v~~l~Gg~~~~ 328 (651)
..-.|+|+.||+|||+-....+............| -+=|--|.|--|.-+.+. ...++. ++ ..+....-+.|.-
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~-~eVsYqIRfd~ti-- 346 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LG-SEVSYQIRFDGTI-- 346 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Cc-cceeEEEEecccc--
Confidence 34589999999999997665553333322222334 444556777555544443 233433 11 1233333333322
Q ss_pred HHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh-----ccchHHHHHHHhcCCCccCCCCceeEEE
Q psy8712 329 DQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK-----QGYGNLIDRMHKQIPKITSDGKRLQMIV 403 (651)
Q Consensus 329 ~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~-----~gf~~~i~~il~~lp~~~~~~~~~Q~l~ 403 (651)
.....|..+|-|.|+.-+.+. +.|.+...|||||||.=.= -|...-+-.+-..+.+....-.....|+
T Consensus 347 ------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLII 419 (1172)
T KOG0926|consen 347 ------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLII 419 (1172)
T ss_pred ------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEE
Confidence 235689999999998877644 4478889999999994210 0111111111111111001112478999
Q ss_pred EeeccChHHHHHHH
Q psy8712 404 CSATLHDFDVKKMA 417 (651)
Q Consensus 404 ~SATl~~~~v~~l~ 417 (651)
+|||+ .|.+|.
T Consensus 420 MSATL---RVsDFt 430 (1172)
T KOG0926|consen 420 MSATL---RVSDFT 430 (1172)
T ss_pred EeeeE---Eecccc
Confidence 99998 455655
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=98.63 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCcHHHHh----hHHhHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 24 LPTDVQAE----AIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 24 ~pt~iQ~~----aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.|+|.|.+ ++..+..|+++++.||||+|||++|++|++..+..
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 47999999 44555688999999999999999999999986543
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=98.63 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCcHHHHh----hHHhHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 24 LPTDVQAE----AIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 24 ~pt~iQ~~----aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.|+|.|.+ ++..+..|+++++.||||+|||++|++|++..+..
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~ 54 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRS 54 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHh
Confidence 47999999 44555688999999999999999999999986543
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-06 Score=92.00 Aligned_cols=54 Identities=31% Similarity=0.479 Sum_probs=43.4
Q ss_pred eeeccccccCCCCCCCCCEEEEeCC------------------CCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 465 GVHARDNARPGIDISGLPFIINMTL------------------PDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 465 ~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
++++|+.+.--+-+++|-+||.-++ |-|..+--||.||+||. +.|.|+.|++++
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 3445666666888889999997665 55777889999999998 899999999974
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-06 Score=92.03 Aligned_cols=180 Identities=19% Similarity=0.199 Sum_probs=109.8
Q ss_pred CCcEEEECchhhHHHHhC-----C-CcccCCcceEeeccchhhhhccchHHHHHHHhc---CCCccCC------------
Q psy8712 337 GVDIVVGTPGRMEDLISG-----G-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQ---IPKITSD------------ 395 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~-----~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~---lp~~~~~------------ 395 (651)
..||||++|=-|...+.. . .--|++|.++|||.||.|+-+ ..+++..+++. .|+...+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 489999999988777764 1 223799999999999988753 23445555544 4432110
Q ss_pred ---CCceeEEEEeeccChHHHHHHHHHhccCC-eEEEccCC-------CCccCceEEEEEEeCcch-----H--------
Q psy8712 396 ---GKRLQMIVCSATLHDFDVKKMAERLMYFP-TWVDLKGE-------DAVPETVHHVVVKIDPQQ-----D-------- 451 (651)
Q Consensus 396 ---~~~~Q~l~~SATl~~~~v~~l~~~~l~~p-~~i~~~~~-------~~~~~~i~~~~~~~~~~~-----~-------- 451 (651)
..=+|+|++|+..++ ++..+....+.|. ..+.+... ......|.|++..++... +
T Consensus 210 g~a~~~RQtii~S~~~~p-e~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~ 288 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTP-EINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTK 288 (442)
T ss_pred CcchheeEeEEecCCCCH-HHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHH
Confidence 122799999999998 9999998866553 23333222 134446677777654332 1
Q ss_pred HHHHHHh-hccccceee--------------------------------------------------cccc--ccCCCCC
Q psy8712 452 ETWGRLR-SHIQTDGVH--------------------------------------------------ARDN--ARPGIDI 478 (651)
Q Consensus 452 ~~~~~l~-~~~~~~~l~--------------------------------------------------~td~--~~rGIDi 478 (651)
..+..+. .......+. -|.+ .-+-..|
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 1112222 111011110 0000 1127788
Q ss_pred CCCCEEEEeCCCCChhhhhhhcCccccCCC------ceEEEEeeeC
Q psy8712 479 SGLPFIINMTLPDDKANYVHRIGRVGRAER------MGLAISLVST 518 (651)
Q Consensus 479 p~v~~VIn~dlP~s~~~YihRiGR~GR~g~------~G~ai~lv~~ 518 (651)
.++.+||.|.+|..+.-|-.-+.-.+.... ...|.++++.
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 899999999999999888776654444332 5677777776
|
; GO: 0005634 nucleus |
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=94.55 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=86.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeE----------------------------EEEeCCccH-------
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRE----------------------------LLIIGGVNV------- 327 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v----------------------------~~l~Gg~~~------- 327 (651)
..|.+||+||+||-|..+.+.+..+....+.....| .++.|..+.
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 468999999999999999998887732111100000 011122111
Q ss_pred -HHHHHHhc---cCCcEEEECchhhHHHHhC-----CCc-ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCC-
Q psy8712 328 -KDQMSVLS---SGVDIVVGTPGRMEDLISG-----GHL-SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDG- 396 (651)
Q Consensus 328 -~~q~~~L~---~~~dIlV~TP~rL~~ll~~-----~~l-~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~- 396 (651)
....-.|. ...|||||+|--|.-++.+ ..+ -++.|.++|||-||.|+.+. .+.+..|+..|.......
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCccccc
Confidence 11111111 2589999999887655542 122 26899999999999998653 455677776654331110
Q ss_pred -----------------CceeEEEEeeccChHHHHHHHHHhccC
Q psy8712 397 -----------------KRLQMIVCSATLHDFDVKKMAERLMYF 423 (651)
Q Consensus 397 -----------------~~~Q~l~~SATl~~~~v~~l~~~~l~~ 423 (651)
.-+|+++||+--.+ .+..+....+.|
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~-~~nS~fn~~c~N 493 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHP-LFNSLFNQYCQN 493 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccH-HHHHHHHHhhhh
Confidence 12689999998876 787777776654
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-07 Score=108.72 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=35.9
Q ss_pred CCCcHHHHhhHHhHh----cCCceEeeecCCCCccceeehhhHHHHH
Q psy8712 23 LLPTDVQAEAIPLIL----GGGDVLMAAETGSGKTGAFCLPIIQIVC 65 (651)
Q Consensus 23 ~~pt~iQ~~aip~il----~g~dvl~~a~TGsGKT~af~lp~l~~~~ 65 (651)
-.+.|-|.+.+..+. .++.+++.|+||+|||+||++|++....
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~ 302 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAK 302 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhh
Confidence 378999999666554 6788999999999999999999986443
|
|
| >KOG2243|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.3e-08 Score=109.95 Aligned_cols=119 Identities=34% Similarity=0.620 Sum_probs=92.4
Q ss_pred cccccCCceeEEEEEeccCCceeecccccccccc--CCCCCCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCc
Q psy8712 123 NKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRD--LGTDRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNM 200 (651)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~ 200 (651)
++.|. .||+|||..+...|--||||+-+.|-.| +|.|..-|.|-|.--.-+-.--+.||..+..|||+||++|++..
T Consensus 1100 syavk-agkwyfefe~vt~gdmrvgwarpgc~pd~elgadd~af~fdg~k~qrwhqg~~~~grswq~gdvvgcmi~l~d~ 1178 (5019)
T KOG2243|consen 1100 SYAVK-AGKWYFEFETVTAGDMRVGWARPGCQPDQELGADDQAFAFDGFKAQRWHQGNEHFGRSWQAGDVVGCMIDLDDA 1178 (5019)
T ss_pred hheee-ccceEEEEEEeeccceeecccCCCCCcchhhCCccceeeeccchhhhhhccccccccccCCCCeEEEEEecccc
Confidence 44555 7999999999999999999999999888 99999999998875444444568899999999999999999999
Q ss_pred eeeeeccCccc----c--cccccchhhhhccCcchhhccccc-cccccCCC
Q psy8712 201 TVAFTKNGQHL----G--LAFNISQQLKNSAFYPAVVLKNAE-MSFNFGAT 244 (651)
Q Consensus 201 ~~~~~~ng~~~----g--~af~~~~~~~~~~~~p~~~~k~~~-~~~~f~~~ 244 (651)
+.-|+-||..+ | .||.- .=-...|-|.||+--+. ...|||-.
T Consensus 1179 sm~ftlngeili~~~gselaf~d--~di~~gfipic~lg~aqigrmn~g~d 1227 (5019)
T KOG2243|consen 1179 SMIFTLNGEILIDDKGSELAFAD--FDIEDGFIPICCLGLAQIGRMNFGKD 1227 (5019)
T ss_pred eEEEEEcCeEEEcCCCCeeeecc--ccccCCceeeeehhhHhhcccccCCc
Confidence 99999999985 2 22221 11234567777766543 34555543
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-07 Score=97.20 Aligned_cols=162 Identities=14% Similarity=0.069 Sum_probs=92.9
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...+....+..+.+.+...|.|||..++..+..............+|||+|. .+..|..+++.++.... .+++..+
T Consensus 16 ~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~---~~~v~~~ 91 (299)
T PF00176_consen 16 EEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD---SLRVIIY 91 (299)
T ss_dssp --TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT----TS-EEEE
T ss_pred hcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccc---ccccccc
Confidence 3456667788899999999999999888776422221112222359999999 77788888888776422 2666666
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHh---CCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLIS---GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~---~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
.|...............+++|+|.+.+..... ...+.--+.++||+||+|.+-+ ........+..+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~--~~s~~~~~l~~l~~------- 162 (299)
T PF00176_consen 92 DGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN--KDSKRYKALRKLRA------- 162 (299)
T ss_dssp SSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT--TTSHHHHHHHCCCE-------
T ss_pred ccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccc--cccccccccccccc-------
Confidence 66552333333334568999999988871110 0111123478999999999843 22334444444543
Q ss_pred eeEEEEeeccChHHHHHH
Q psy8712 399 LQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l 416 (651)
...+++|||.-.....++
T Consensus 163 ~~~~lLSgTP~~n~~~dl 180 (299)
T PF00176_consen 163 RYRWLLSGTPIQNSLEDL 180 (299)
T ss_dssp CEEEEE-SS-SSSGSHHH
T ss_pred ceEEeecccccccccccc
Confidence 577899999644333433
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-06 Score=79.05 Aligned_cols=58 Identities=36% Similarity=0.503 Sum_probs=51.8
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEe
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISL 515 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~l 515 (651)
........+.++..+..|+|+|++++||.++.|.+...|+|++||++|.|..|.++.+
T Consensus 74 f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 74 FREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred HHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 4444477888999999999999999999999999999999999999999998887754
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.4e-06 Score=100.79 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=67.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
.+-|++++..||.+-++++..+.++++ +++.++.++.+..+..... .+||+.+|...+ .|+++.+. ..
T Consensus 119 ~VhVvT~NdyLA~RD~e~m~pvy~~LG---Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v 193 (870)
T CHL00122 119 GVHIVTVNDYLAKRDQEWMGQIYRFLG---LTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVV 193 (870)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHHcC---CceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhh
Confidence 478999999999999999999999987 9999999888876655544 479999999866 35555432 23
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
...+.+.||||+|.++
T Consensus 194 ~r~~~faIVDEvDSiL 209 (870)
T CHL00122 194 QRPFNYCIIDEVDSIL 209 (870)
T ss_pred ccccceeeeecchhhe
Confidence 4678899999999875
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.1e-06 Score=85.98 Aligned_cols=84 Identities=19% Similarity=0.328 Sum_probs=63.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhH-HHHhCCC----c--c
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRME-DLISGGH----L--S 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~-~ll~~~~----l--~ 358 (651)
.+=|++.+..||..=++++..+...++ +++.++.++.+........ .+||+.+|...+. |.++... . .
T Consensus 120 ~V~vvT~NdyLA~RD~~~~~~~y~~LG---lsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~ 194 (266)
T PF07517_consen 120 GVHVVTSNDYLAKRDAEEMRPFYEFLG---LSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQV 194 (266)
T ss_dssp -EEEEESSHHHHHHHHHHHHHHHHHTT-----EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--
T ss_pred CcEEEeccHHHhhccHHHHHHHHHHhh---hccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhc
Confidence 467889999999999999999999887 9999999998865544333 3689999999884 4555321 1 2
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
.....++||||||.++
T Consensus 195 ~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 195 QRGFDFAIVDEVDSIL 210 (266)
T ss_dssp SSSSSEEEECTHHHHT
T ss_pred cCCCCEEEEeccceEE
Confidence 4788999999999876
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-06 Score=89.62 Aligned_cols=136 Identities=14% Similarity=0.087 Sum_probs=89.0
Q ss_pred CCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV 327 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~ 327 (651)
....+--|++.++|.|||.+.+.|+... ...+|||+.+---+.|...+++.+...-+ -.++.++....
T Consensus 317 NgRARSGiIVLPCGAGKtLVGvTAa~ti--------kK~clvLcts~VSVeQWkqQfk~wsti~d---~~i~rFTsd~K- 384 (776)
T KOG1123|consen 317 NGRARSGIIVLPCGAGKTLVGVTAACTI--------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD---DQICRFTSDAK- 384 (776)
T ss_pred CCcccCceEEEecCCCCceeeeeeeeee--------cccEEEEecCccCHHHHHHHHHhhcccCc---cceEEeecccc-
Confidence 3455667888999999999998887332 34799999999999999999988875332 22333333221
Q ss_pred HHHHHHhccCCcEEEECchhhHHHHhCC--------CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCce
Q psy8712 328 KDQMSVLSSGVDIVVGTPGRMEDLISGG--------HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRL 399 (651)
Q Consensus 328 ~~q~~~L~~~~dIlV~TP~rL~~ll~~~--------~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~ 399 (651)
.....++.|+|+|-..+..--++. .+.-..-.++|+||+|.+-..-|+..+.-+-.+
T Consensus 385 ----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH----------- 449 (776)
T KOG1123|consen 385 ----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH----------- 449 (776)
T ss_pred ----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH-----------
Confidence 123457899999975553211111 112244579999999998776565544433333
Q ss_pred eEEEEeeccCh
Q psy8712 400 QMIVCSATLHD 410 (651)
Q Consensus 400 Q~l~~SATl~~ 410 (651)
.-++++||+-.
T Consensus 450 cKLGLTATLvR 460 (776)
T KOG1123|consen 450 CKLGLTATLVR 460 (776)
T ss_pred hhccceeEEee
Confidence 44689999854
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-06 Score=77.02 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=62.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
.+.++|||.|||.++..+.++++... +++..-.-+. ....+.-|-|+|-..+...+.+ .....+.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~-------~~~~t~~~~~-------~~~g~~~i~vMc~at~~~~~~~-p~~~~~y 96 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLP-------VRFHTNARMR-------THFGSSIIDVMCHATYGHFLLN-PCRLKNY 96 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSS-------EEEESTTSS-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCC-------cccCceeeec-------cccCCCcccccccHHHHHHhcC-cccccCc
Confidence 35589999999999999998886443 3332111110 1123445778888888776665 4456899
Q ss_pred ceEeeccchhhhhc--cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 363 RFFVLDEADGLLKQ--GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 363 ~~lViDEaD~ll~~--gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+++|+||||..-.. .++..+...-. .. ...+|++|||.|.
T Consensus 97 d~II~DEcH~~Dp~sIA~rg~l~~~~~-~g-------~~~~i~mTATPPG 138 (148)
T PF07652_consen 97 DVIIMDECHFTDPTSIAARGYLRELAE-SG-------EAKVIFMTATPPG 138 (148)
T ss_dssp SEEEECTTT--SHHHHHHHHHHHHHHH-TT-------S-EEEEEESS-TT
T ss_pred cEEEEeccccCCHHHHhhheeHHHhhh-cc-------CeeEEEEeCCCCC
Confidence 99999999975322 12222333221 11 3679999999986
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-06 Score=95.67 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=66.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Ccc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HLS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l~ 358 (651)
.+-|++++..||..-++++..+.++++ ++|.++.++.+..+..... .+||+.||+..+ .|.|+.+ ...
T Consensus 128 gVhVVTvNdYLA~RDae~m~~vy~~LG---Ltvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm~~~~~~~v 202 (939)
T PRK12902 128 GVHVVTVNDYLARRDAEWMGQVHRFLG---LSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNMATDISEVV 202 (939)
T ss_pred CeEEEeCCHHHHHhHHHHHHHHHHHhC---CeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhhcccccccc
Confidence 478999999999999999999999886 9999998887766554333 689999999998 3444322 234
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
...+.+.||||+|.+|
T Consensus 203 qR~~~faIVDEvDSIL 218 (939)
T PRK12902 203 QRPFNYCVIDEVDSIL 218 (939)
T ss_pred cCccceEEEeccccee
Confidence 5788999999999775
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-06 Score=72.04 Aligned_cols=50 Identities=36% Similarity=0.565 Sum_probs=44.8
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
+.......+.+++.+..|+|++++++||.+++|.+...|.|++||++|.|
T Consensus 33 f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 33 FNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred HHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 44445578888999999999999999999999999999999999999975
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=86.64 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=50.3
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCC-----CCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTL-----PDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl-----P~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
.+....+++++-+.++.|||+|.|++|-.+|. .+|-.+.+|=||||+|. -.|.+|++...
T Consensus 492 LR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 492 LRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred HhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 44456677788888889999999999999886 46889999999999997 66999987764
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.2e-06 Score=94.01 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=70.9
Q ss_pred EEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH----
Q psy8712 256 AVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---- 331 (651)
Q Consensus 256 ~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---- 331 (651)
..+.+|+|||+.+..-+- .-...++|+|+|+..|..|+.+....-.. + .++...+++........
T Consensus 185 LIMAcGTGKTfTsLkisE-------ala~~~iL~LvPSIsLLsQTlrew~~~~~-l---~~~a~aVcSD~kvsrs~eDik 253 (1518)
T COG4889 185 LIMACGTGKTFTSLKISE-------ALAAARILFLVPSISLLSQTLREWTAQKE-L---DFRASAVCSDDKVSRSAEDIK 253 (1518)
T ss_pred EEEecCCCccchHHHHHH-------HHhhhheEeecchHHHHHHHHHHHhhccC-c---cceeEEEecCccccccccccc
Confidence 346689999999876441 11225899999999999998887654321 2 26666665543221111
Q ss_pred ----------------HHh-----ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh
Q psy8712 332 ----------------SVL-----SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK 375 (651)
Q Consensus 332 ----------------~~L-----~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~ 375 (651)
..+ ..+--||.+|-+.+...-.....-+..++++|-||||+--.
T Consensus 254 ~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 254 ASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred cccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhcccc
Confidence 111 12457888888777665554455678899999999998653
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=92.35 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=36.0
Q ss_pred CCCCCcHHHHhhHHhHh---cC------CceEeeecCCCCccceeehhhHHHHHH
Q psy8712 21 DWLLPTDVQAEAIPLIL---GG------GDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~il---~g------~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
|| .+.+-|.+.+..|. .+ +.+++.|+||+|||+||++|++....+
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~ 76 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA 76 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH
Confidence 55 68999999766664 33 568899999999999999999875543
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.2e-05 Score=87.18 Aligned_cols=189 Identities=17% Similarity=0.276 Sum_probs=135.5
Q ss_pred eeeeccCcccccccccchhhhhccCcchhhccccccccccCCCC--------CCCCCCCCeEEEecCCCCceeeeecccc
Q psy8712 202 VAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATP--------FKHEPPKDYIAVCNAPKQNVKHSESADV 273 (651)
Q Consensus 202 ~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~--------~~~~~~~~~i~~~~~gsGKT~~~~~a~~ 273 (651)
+-.|-++-.+..+|-.|.-|..-.-.|+--+.|.+..-.|.+.. ..++...+.++...+|+|||+++.+|+.
T Consensus 1102 ~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l 1181 (1674)
T KOG0951|consen 1102 LPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALL 1181 (1674)
T ss_pred cccchhhccCcccCCCCchhhhccccchhccCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhc
Confidence 44455666678888888888888788888889987777776642 2345678899999999999999998873
Q ss_pred ccCCccccCCCCeEEEEeCCHHHHHHHHHHH-HHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHH
Q psy8712 274 SAGPVKLVNNAPQAIIIEPSRELAEQTFNQI-IKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLI 352 (651)
Q Consensus 274 ~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~-~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll 352 (651)
. ....-+++.+.|..+.+.-++... ++|+... +..+..+.|..+..-. +....+|+|+||+++..+
T Consensus 1182 ~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~---G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l- 1248 (1674)
T KOG0951|consen 1182 R------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL---GLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL- 1248 (1674)
T ss_pred C------CccceEEEEecchHHHHHHHHHHHHHhhcccc---CceEEecCCccccchH---HhhhcceEEechhHHHHH-
Confidence 3 344568999999999987666544 4555543 4777777776665443 233469999999998654
Q ss_pred hCCCcccCCcceEeeccchhhhhccchH------HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH
Q psy8712 353 SGGHLSLTHCRFFVLDEADGLLKQGYGN------LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 353 ~~~~l~l~~l~~lViDEaD~ll~~gf~~------~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l 416 (651)
+ ....+++.|.||.|.+-+. +++ .++.|-..+-+ +.+++.+|..+. ..+++
T Consensus 1249 q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k------~ir~v~ls~~la--na~d~ 1305 (1674)
T KOG0951|consen 1249 Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQLEK------KIRVVALSSSLA--NARDL 1305 (1674)
T ss_pred h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHHHHh------heeEEEeehhhc--cchhh
Confidence 2 5678999999999988642 111 14555555554 578888888876 44554
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.2e-05 Score=83.41 Aligned_cols=226 Identities=16% Similarity=0.101 Sum_probs=130.9
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV 333 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~ 333 (651)
+.-+++|.||||.-+.... ......++--|.|-||..+++.++..+ +.+-+++|.......-+
T Consensus 194 i~H~GPTNSGKTy~ALqrl---------~~aksGvycGPLrLLA~EV~~r~na~g-------ipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRL---------KSAKSGVYCGPLRLLAHEVYDRLNALG-------IPCDLLTGEERRFVLDN- 256 (700)
T ss_pred EEEeCCCCCchhHHHHHHH---------hhhccceecchHHHHHHHHHHHhhhcC-------CCccccccceeeecCCC-
Confidence 5667889999999877554 223356788899999999999998776 66667777543222111
Q ss_pred hccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHH-HHHHhcCCCccCCCCceeEEEEeeccChHH
Q psy8712 334 LSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLI-DRMHKQIPKITSDGKRLQMIVCSATLHDFD 412 (651)
Q Consensus 334 L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i-~~il~~lp~~~~~~~~~Q~l~~SATl~~~~ 412 (651)
.+.+..+=+|-|.+.- -...+..||||+..|-|...+-.. +.++..... .....+= ..
T Consensus 257 -~~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad------EiHLCGe------ps 315 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD------EIHLCGE------PS 315 (700)
T ss_pred -CCcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh------hhhccCC------ch
Confidence 1235666666554310 135678999999998874332222 222222211 1222111 14
Q ss_pred HHHHHHHhcc---CCeEEEcc-------CCCCc---cCce---EEEEEEe--------------------------Ccch
Q psy8712 413 VKKMAERLMY---FPTWVDLK-------GEDAV---PETV---HHVVVKI--------------------------DPQQ 450 (651)
Q Consensus 413 v~~l~~~~l~---~p~~i~~~-------~~~~~---~~~i---~~~~~~~--------------------------~~~~ 450 (651)
+.++.+.++. +-..+..- .++.. ..+| +.++.+. +++.
T Consensus 316 vldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeT 395 (700)
T KOG0953|consen 316 VLDLVRKILKMTGDDVEVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPET 395 (700)
T ss_pred HHHHHHHHHhhcCCeeEEEeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCch
Confidence 4445554432 11111100 00000 1111 1222222 2222
Q ss_pred HHHHHHHhh--ccccceeeccccccCCCCCCCCCEEEEeCCC---------CChhhhhhhcCccccCCC---ceEEEEee
Q psy8712 451 DETWGRLRS--HIQTDGVHARDNARPGIDISGLPFIINMTLP---------DDKANYVHRIGRVGRAER---MGLAISLV 516 (651)
Q Consensus 451 ~~~~~~l~~--~~~~~~l~~td~~~rGIDip~v~~VIn~dlP---------~s~~~YihRiGR~GR~g~---~G~ai~lv 516 (651)
+..-..+++ ...+++++++|....|+++. |+-||.|++- -+...-.|-.|||||.|. .|.+.+|.
T Consensus 396 r~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 396 RLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred hHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 222222233 36788999999999999974 8999998874 356677899999999975 68888877
Q ss_pred eC
Q psy8712 517 ST 518 (651)
Q Consensus 517 ~~ 518 (651)
.+
T Consensus 475 ~e 476 (700)
T KOG0953|consen 475 SE 476 (700)
T ss_pred Hh
Confidence 65
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.4e-05 Score=90.24 Aligned_cols=50 Identities=32% Similarity=0.428 Sum_probs=40.9
Q ss_pred HHHcCCCCCcHHHHhhHHhH----hcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 17 VEEMDWLLPTDVQAEAIPLI----LGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
...+....|.+.|.+.+..+ .+|+-+++.||||+|||++|++|++.....
T Consensus 8 ~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~ 61 (654)
T COG1199 8 AVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE 61 (654)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH
Confidence 34556678999999998654 355669999999999999999999986655
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00017 Score=85.16 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=83.9
Q ss_pred CCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHH--Hh----hccCCCCCeeEEEEeCCc
Q psy8712 252 KDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQII--KF----KKFITDPKIRELLIIGGV 325 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~--~l----~~~~~~~~i~v~~l~Gg~ 325 (651)
.|+...+.||+|||.++..++..+.. ..+..+.||+||+.+.-..+.+.++ .. ....+...++...+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~---~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQ---KYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHH---HcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 36777788899999887777633322 1234579999999988887777665 12 122233346655555443
Q ss_pred -------cHHHHHHHh-c------cCCcEEEECchhhHHHHh----------CCC-cc---cCCc-ceEeeccchhhhhc
Q psy8712 326 -------NVKDQMSVL-S------SGVDIVVGTPGRMEDLIS----------GGH-LS---LTHC-RFFVLDEADGLLKQ 376 (651)
Q Consensus 326 -------~~~~q~~~L-~------~~~dIlV~TP~rL~~ll~----------~~~-l~---l~~l-~~lViDEaD~ll~~ 376 (651)
....+.+.. . +..+|+|+|-+.+..-.. .+. .. +... -+||+||.|++-..
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 112222211 1 157999999988754211 001 11 2222 27899999998542
Q ss_pred cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 377 GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 377 gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+ .....| ..+.+ .-++.||||.+.
T Consensus 217 ~--k~~~~i-~~lnp-------l~~lrysAT~~~ 240 (986)
T PRK15483 217 N--KFYQAI-EALKP-------QMIIRFGATFPD 240 (986)
T ss_pred h--HHHHHH-HhcCc-------ccEEEEeeecCC
Confidence 1 123344 33332 245779999974
|
|
| >KOG3953|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.8e-05 Score=74.51 Aligned_cols=154 Identities=24% Similarity=0.324 Sum_probs=105.7
Q ss_pred eeeeccccccccccCCCC-c-ccccccccccccccccccccCCceeEEEEEeccC--C-ceeecccccccccc-------
Q psy8712 89 WILSVWDRDTAMAITPEG-L-RCQSREQKEWHGCRANKGVYGRGKYYYEATVTDE--G-LCRVGWSTSQAVRD------- 156 (651)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--~-~~~~~~~~~~~~~~------- 156 (651)
+..+..+|+...-+-.++ . .-+-.....=.|.|++.|.+ +|..++|+.+... | -.=||-+|+.|.+.
T Consensus 27 ~~w~~~drs~nv~vk~~~~~tfhrhpvaqstd~~rGk~g~~-~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aL 105 (242)
T KOG3953|consen 27 HGWSPSDRSLNVFVKLPDGLTFHRHPVAQSTDGIRGKRGYS-RGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTAL 105 (242)
T ss_pred hccCcccccceeEEecCCcceEEecCCccccccccceeeec-cCceEEEEEecCCccCCcceEEEEcccCchhhhHHHHH
Confidence 344555555544444333 2 12222223356888888888 7999999999873 2 34589999999887
Q ss_pred CCCCCCCCCcC-CCCccCCCc------ccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcch
Q psy8712 157 LGTDRFGFGFG-GTGKKSNNK------QFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPA 229 (651)
Q Consensus 157 ~g~~~~~~~~g-g~~~ks~~~------~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~ 229 (651)
+|.+.+|||.- +..+=-|++ ..-+-.+.|-.+|.|+|+||.+.|+.+|-++|+.||.||.--. ...+||+
T Consensus 106 lGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~---~~~LYP~ 182 (242)
T KOG3953|consen 106 LGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK---DKKLYPA 182 (242)
T ss_pred hCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCC---CCcceee
Confidence 89999999753 222222332 1112267789999999999999999999999999999997543 7789999
Q ss_pred hhcc--ccccccccCCCCC
Q psy8712 230 VVLK--NAEMSFNFGATPF 246 (651)
Q Consensus 230 ~~~k--~~~~~~~f~~~~~ 246 (651)
|+-. |+|+..-|-.++.
T Consensus 183 Vsav~g~~Evtm~Ylg~~~ 201 (242)
T KOG3953|consen 183 VSAVWGHCEVTMKYLGTLD 201 (242)
T ss_pred eeehhcceeEEEEEeCCcC
Confidence 8854 3555555544444
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00029 Score=79.64 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=89.0
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKD 329 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~ 329 (651)
..-|-|.....|-|||.=++..++.+.... ..++|. |||+|---|.+ ++..|.++.+ ++++++++|......
T Consensus 185 ngingILaDEMGLGKTlQtIs~l~yl~~~~-~~~GPf-LVi~P~StL~N----W~~Ef~rf~P--~l~~~~~~Gdk~eR~ 256 (971)
T KOG0385|consen 185 NGINGILADEMGLGKTLQTISLLGYLKGRK-GIPGPF-LVIAPKSTLDN----WMNEFKRFTP--SLNVVVYHGDKEERA 256 (971)
T ss_pred cCcccEeehhcccchHHHHHHHHHHHHHhc-CCCCCe-EEEeeHhhHHH----HHHHHHHhCC--CcceEEEeCCHHHHH
Confidence 455778888999999988776664443321 234555 78899877654 4444444443 689999998864322
Q ss_pred HH--HHh-ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 330 QM--SVL-SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 330 q~--~~L-~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
.. ..+ ....||+|+|-+..+.- ...+.--.=+++||||||++=.. ...+..+++.+.. ..-+++|.
T Consensus 257 ~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~-------~nrLLlTG 325 (971)
T KOG0385|consen 257 ALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKT-------DNRLLLTG 325 (971)
T ss_pred HHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHHhcc-------cceeEeeC
Confidence 22 122 23689999998876532 12222234479999999999653 3345566766654 34567777
Q ss_pred cc
Q psy8712 407 TL 408 (651)
Q Consensus 407 Tl 408 (651)
|.
T Consensus 326 TP 327 (971)
T KOG0385|consen 326 TP 327 (971)
T ss_pred Cc
Confidence 74
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.5e-05 Score=86.42 Aligned_cols=126 Identities=8% Similarity=0.091 Sum_probs=86.3
Q ss_pred CCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH---Hhcc-
Q psy8712 261 PKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS---VLSS- 336 (651)
Q Consensus 261 gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~---~L~~- 336 (651)
|+|||.++..++... -..+.++|||+|...|+.|+.+.++.... .-.+..+.++.+..+..+ .+.+
T Consensus 170 GSGKTevyl~~i~~~-----l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-----~~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 170 GEDWARRLAAAAAAT-----LRAGRGALVVVPDQRDVDRLEAALRALLG-----AGDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred CCcHHHHHHHHHHHH-----HHcCCeEEEEecchhhHHHHHHHHHHHcC-----CCcEEEECCCCCHHHHHHHHHHHhCC
Confidence 899999988776221 12366899999999999999999986543 145677888777654443 3333
Q ss_pred CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh---ccchHHHHHH---HhcCCCccCCCCceeEEEEeeccCh
Q psy8712 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK---QGYGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 337 ~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~---~gf~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
.++|||||-..+ ...++++.+|||||-|.-.- .+.+.+.+.+ ..... +..+|+-|||.+-
T Consensus 240 ~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~-------~~~lvLgSaTPSl 305 (665)
T PRK14873 240 QARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH-------GCALLIGGHARTA 305 (665)
T ss_pred CCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc-------CCcEEEECCCCCH
Confidence 489999995332 34689999999999885431 1223233333 23322 5899999999764
|
|
| >KOG2242|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=2e-05 Score=88.67 Aligned_cols=115 Identities=37% Similarity=0.663 Sum_probs=103.8
Q ss_pred EEEeccCCceeeccccccccccCCCCCCCCCcCCCCccCCCcccCccCcccCCCccccccccc---CCceeeeeccCccc
Q psy8712 135 EATVTDEGLCRVGWSTSQAVRDLGTDRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDL---DNMTVAFTKNGQHL 211 (651)
Q Consensus 135 e~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~---~~~~~~~~~ng~~~ 211 (651)
-....+.-..|++|+...+..-++.+.++++|.++++|+++..|..|++-|..+|+|||+++. |.-..+|.|||+.+
T Consensus 99 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~ 178 (558)
T KOG2242|consen 99 QPLEPDPHDVRIGWSLDSIRTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDL 178 (558)
T ss_pred CccccccccccccccchhhhhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccccccCcchhhhccchh
Confidence 345667778899999999999999999999999999999999999999999999999999995 77899999999999
Q ss_pred ccccccchhhhhcc-CcchhhccccccccccCCCCCCCC
Q psy8712 212 GLAFNISQQLKNSA-FYPAVVLKNAEMSFNFGATPFKHE 249 (651)
Q Consensus 212 g~af~~~~~~~~~~-~~p~~~~k~~~~~~~f~~~~~~~~ 249 (651)
+.+|.+..-+.... ++|.+..+|..+.++|++.+-...
T Consensus 179 ~~~~~l~~~~~~~~~~~p~vl~~~~~ve~~f~~~~ag~~ 217 (558)
T KOG2242|consen 179 GESFLLSKEDLGGQALYPHVLRKNCAVEGNFGQKAAGYE 217 (558)
T ss_pred hhhhcchhhhccCcccCcccccCcceecccccccccccc
Confidence 99999987666554 999999999999999999875543
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00016 Score=85.43 Aligned_cols=175 Identities=18% Similarity=0.142 Sum_probs=104.3
Q ss_pred ccccccccCCCCC-------CCCCCCCe--EEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHH
Q psy8712 234 NAEMSFNFGATPF-------KHEPPKDY--IAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQI 304 (651)
Q Consensus 234 ~~~~~~~f~~~~~-------~~~~~~~~--i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~ 304 (651)
.....|.+++..+ ...+..++ +-++.||+|||.+-...|..+. ....+.+..|-.-.|.|-.|+-+.+
T Consensus 405 ~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLs---d~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 405 SAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALR---DDKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred CCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhC---CCCCCceEEEEccccceeccchHHH
Confidence 4445566666542 12344443 4578999999999877662222 2345668888888999999999888
Q ss_pred HHhhccCCCCCeeEEEEeCCccHHHHH-------------------------------------------HHhcc-----
Q psy8712 305 IKFKKFITDPKIRELLIIGGVNVKDQM-------------------------------------------SVLSS----- 336 (651)
Q Consensus 305 ~~l~~~~~~~~i~v~~l~Gg~~~~~q~-------------------------------------------~~L~~----- 336 (651)
++-...-+ =..++++||....+-. ..|.+
T Consensus 482 r~rL~L~~---ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~ 558 (1110)
T TIGR02562 482 KTRLNLSD---DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEK 558 (1110)
T ss_pred HHhcCCCc---cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhh
Confidence 87543222 2334455543211100 01110
Q ss_pred ---CCcEEEECchhhHHHHh--C-CCcccC----CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 337 ---GVDIVVGTPGRMEDLIS--G-GHLSLT----HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 337 ---~~dIlV~TP~rL~~ll~--~-~~l~l~----~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
...|+|||+..++-... + +...+. .=+.|||||+|..-.. ....+..++.-+... ...++++||
T Consensus 559 rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~l-----G~~VlLmSA 632 (1110)
T TIGR02562 559 TLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLL-----GSRVLLSSA 632 (1110)
T ss_pred hhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHc-----CCCEEEEeC
Confidence 26899999999987652 2 222111 1358999999965332 123344555433322 478999999
Q ss_pred ccChHHHHHHHHHh
Q psy8712 407 TLHDFDVKKMAERL 420 (651)
Q Consensus 407 Tl~~~~v~~l~~~~ 420 (651)
|+|+.....+...|
T Consensus 633 TLP~~l~~~L~~Ay 646 (1110)
T TIGR02562 633 TLPPALVKTLFRAY 646 (1110)
T ss_pred CCCHHHHHHHHHHH
Confidence 99996666666655
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0012 Score=76.41 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=89.4
Q ss_pred CeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH
Q psy8712 253 DYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~ 332 (651)
-.++.++.|+|||++...-+... ...+.-.+|+|+-.+.|+.++.+.++...-. ++....-..+....
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~----l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~----gFv~Y~d~~~~~i~---- 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDA----LKNPDKSVLVVSHRRSLTKSLAERFKKAGLS----GFVNYLDSDDYIID---- 118 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHh----ccCCCCeEEEEEhHHHHHHHHHHHHhhcCCC----cceeeecccccccc----
Confidence 37889999999998765443111 0134568999999999999999988754310 11111111111110
Q ss_pred HhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHH------HHHHhcCCCccCCCCceeEEEEee
Q psy8712 333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLI------DRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 333 ~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i------~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
.+..+-++...+.|..+. .-.+++.++|||||+...+.+-|.+.+ ..++..+-.. ...+|++-|
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~-----ak~VI~~DA 188 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN-----AKTVIVMDA 188 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh-----CCeEEEecC
Confidence 113466677766664432 223567899999999988875332222 2222222110 358999999
Q ss_pred ccChHHHHHHHHHhcc
Q psy8712 407 TLHDFDVKKMAERLMY 422 (651)
Q Consensus 407 Tl~~~~v~~l~~~~l~ 422 (651)
|++. ..-+|.+.+..
T Consensus 189 ~ln~-~tvdFl~~~Rp 203 (824)
T PF02399_consen 189 DLND-QTVDFLASCRP 203 (824)
T ss_pred CCCH-HHHHHHHHhCC
Confidence 9997 77778777654
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0002 Score=72.86 Aligned_cols=87 Identities=26% Similarity=0.453 Sum_probs=67.7
Q ss_pred cCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCC-ccHHHHHHHhcc-CCcEEEECchhhHHHHhCCCcc
Q psy8712 281 VNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGG-VNVKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 281 ~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg-~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+..|.+|||+.+-.-|..+.+.++.|... ..+++-++.- ...++|...|++ .++|.||||+|+..++..+.+.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~k----~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~ 198 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKGK----DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALS 198 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhccC----CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCC
Confidence 467899999999977777777777776311 1233333332 357888888875 6899999999999999999999
Q ss_pred cCCcceEeeccch
Q psy8712 359 LTHCRFFVLDEAD 371 (651)
Q Consensus 359 l~~l~~lViDEaD 371 (651)
++++++||||--|
T Consensus 199 l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 199 LSNLKRIVLDWSY 211 (252)
T ss_pred cccCeEEEEcCCc
Confidence 9999999999754
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00084 Score=67.02 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=25.1
Q ss_pred CcHHHHhhHHhHhcCCc-eEeeecCCCCcc
Q psy8712 25 PTDVQAEAIPLILGGGD-VLMAAETGSGKT 53 (651)
Q Consensus 25 pt~iQ~~aip~il~g~d-vl~~a~TGsGKT 53 (651)
+.+-|.+||..++...+ .++.+|.|||||
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT 31 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKT 31 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHH
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChH
Confidence 46889999999999999 999999999999
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00083 Score=66.32 Aligned_cols=30 Identities=37% Similarity=0.556 Sum_probs=24.9
Q ss_pred CcHHHHhhHHhHhcCCc--eEeeecCCCCccc
Q psy8712 25 PTDVQAEAIPLILGGGD--VLMAAETGSGKTG 54 (651)
Q Consensus 25 pt~iQ~~aip~il~g~d--vl~~a~TGsGKT~ 54 (651)
+++-|.+|+..++..+| +++.++.|||||.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~ 33 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTT 33 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHH
Confidence 68899999999986653 7778999999995
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=6.2e-05 Score=87.40 Aligned_cols=128 Identities=19% Similarity=0.297 Sum_probs=81.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC--CCcccCCc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG--GHLSLTHC 362 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~--~~l~l~~l 362 (651)
.++++++|..+|+..-.+... +....+++++.-+.|....+.. .+ ..++|+|+||+++....++ ..-.+.++
T Consensus 974 ~kvvyIap~kalvker~~Dw~---~r~~~~g~k~ie~tgd~~pd~~--~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v 1047 (1230)
T KOG0952|consen 974 SKVVYIAPDKALVKERSDDWS---KRDELPGIKVIELTGDVTPDVK--AV-READIVITTPEKWDGISRSWQTRKYVQSV 1047 (1230)
T ss_pred ccEEEEcCCchhhcccccchh---hhcccCCceeEeccCccCCChh--he-ecCceEEcccccccCccccccchhhhccc
Confidence 368899999999875444433 2233346888888888765522 22 3589999999999887773 33457899
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
..+|+||.|++-+ +.++.++.+..+.... .......|.+.+|--+. ...+++.++-
T Consensus 1048 ~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~--na~dla~wl~ 1104 (1230)
T KOG0952|consen 1048 SLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALA--NANDLADWLN 1104 (1230)
T ss_pred cceeecccccccC-CCcceEEEEeeccccCccccCcchhhhhHhhhhh--ccHHHHHHhC
Confidence 9999999998765 5556555554443321 11122456666654333 4556666654
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00068 Score=73.19 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=70.4
Q ss_pred CeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH
Q psy8712 253 DYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~ 332 (651)
-+++.+..|||||.++...+..+ .....+..+++++++..|...+.+.+..-...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l---~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL---QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP---------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh---hccccCCceEEEEecchHHHHHHHHHhhhccc----------------------
Confidence 46889999999999988776443 11345678999999999999888877543300
Q ss_pred HhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhcc-------chHHHHHHHhc
Q psy8712 333 VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG-------YGNLIDRMHKQ 388 (651)
Q Consensus 333 ~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~g-------f~~~i~~il~~ 388 (651)
......+..|..+...+..........++|||||||+|.+.+ ...++..+++.
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001122333333333222223345788999999999998832 23567777766
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0012 Score=79.82 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=97.4
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHH
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK 328 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~ 328 (651)
....+.++.=.+|||||.....++..+... ...|.+++|+-.++|-.|+.+.++.++.... ... ...+..
T Consensus 271 ~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~----~~~---~~~s~~ 340 (962)
T COG0610 271 GDGKGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF----NDP---KAESTS 340 (962)
T ss_pred CcCCceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhh----hcc---cccCHH
Confidence 456778888899999999877766333322 6789999999999999999999999986432 111 344455
Q ss_pred HHHHHhccCC-cEEEECchhhHHHHhCCC-cccCCc-ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 329 DQMSVLSSGV-DIVVGTPGRMEDLISGGH-LSLTHC-RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 329 ~q~~~L~~~~-dIlV~TP~rL~~ll~~~~-l~l~~l-~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
+-.+.|+.+. .|+|+|-+.+........ ..+.+- -.||+||||+-- ++..-..+-..+++ ...++||
T Consensus 341 ~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~~-------a~~~gFT 410 (962)
T COG0610 341 ELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALKK-------AIFIGFT 410 (962)
T ss_pred HHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhcc-------ceEEEee
Confidence 5555666544 899999999987775541 112222 367899999842 33333444445553 6899999
Q ss_pred eccC
Q psy8712 406 ATLH 409 (651)
Q Consensus 406 ATl~ 409 (651)
.|.-
T Consensus 411 GTPi 414 (962)
T COG0610 411 GTPI 414 (962)
T ss_pred CCcc
Confidence 9853
|
|
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.025 Score=61.57 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=33.4
Q ss_pred CCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceE--EEEeeeCC--ccccc
Q psy8712 475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGL--AISLVSTV--PEKVW 524 (651)
Q Consensus 475 GIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~--ai~lv~~~--de~~~ 524 (651)
||++...+.||...+|.++.-.+|---|+-|-|.+.. ++.|+... |+..|
T Consensus 557 GLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~W 610 (689)
T KOG1000|consen 557 GLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMW 610 (689)
T ss_pred ceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHH
Confidence 9999999999999999987666555555555454433 44455543 44444
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.018 Score=66.91 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=89.4
Q ss_pred CCCeEEEecCCCCceeeeeccc-cccCCcc-ccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH-
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD-VSAGPVK-LVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV- 327 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~-~~~~~~~-~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~- 327 (651)
..+.|..-.-|+|||...+..+ +.+.+.+ +.+--.++||++|.- |+...++.|.++.. ...+....++|....
T Consensus 263 ~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWkkEF~KWl~---~~~i~~l~~~~~~~~~ 338 (776)
T KOG0390|consen 263 SGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWKKEFGKWLG---NHRINPLDFYSTKKSS 338 (776)
T ss_pred CCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH-HHHHHHHHHHHhcc---ccccceeeeecccchh
Confidence 4456777778999999988877 3332221 112235789999963 55555555555443 224777777877764
Q ss_pred -HHHHHHhcc-----CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 328 -KDQMSVLSS-----GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 328 -~~q~~~L~~-----~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
..+...+.- ..-|++.+-+.+.+..+ .+....+.+||+||.|++=+. ...+...+..+.- ..-
T Consensus 339 w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~--~s~~~kaL~~l~t-------~rR 407 (776)
T KOG0390|consen 339 WIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS--DSLTLKALSSLKT-------PRR 407 (776)
T ss_pred hhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch--hhHHHHHHHhcCC-------Cce
Confidence 111111211 23566667666654333 344678899999999987543 2234455555543 467
Q ss_pred EEEeeccChHHHHHH
Q psy8712 402 IVCSATLHDFDVKKM 416 (651)
Q Consensus 402 l~~SATl~~~~v~~l 416 (651)
|++|.|+-..++.++
T Consensus 408 VLLSGTp~QNdl~Ey 422 (776)
T KOG0390|consen 408 VLLTGTPIQNDLKEY 422 (776)
T ss_pred EEeeCCcccccHHHH
Confidence 788888644344443
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.023 Score=65.05 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=86.2
Q ss_pred CCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH----
Q psy8712 252 KDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV---- 327 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~---- 327 (651)
.+-|.-...|-|||.=.+..++.+...... ...||||||.. ++.|..++++.+.. .++|..+++..+.
T Consensus 225 ~GGILgDeMGLGKTIQiisFLaaL~~S~k~--~~paLIVCP~T-ii~qW~~E~~~w~p-----~~rv~ilh~t~s~~r~~ 296 (923)
T KOG0387|consen 225 AGGILGDEMGLGKTIQIISFLAALHHSGKL--TKPALIVCPAT-IIHQWMKEFQTWWP-----PFRVFILHGTGSGARYD 296 (923)
T ss_pred CCCeecccccCccchhHHHHHHHHhhcccc--cCceEEEccHH-HHHHHHHHHHHhCc-----ceEEEEEecCCcccccc
Confidence 345666788999998665554333333111 25699999975 45566666665553 4888888776552
Q ss_pred ----HHHHHH-h----ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 328 ----KDQMSV-L----SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 328 ----~~q~~~-L----~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
...... | ....+|+|+|-..+.- ....+.--.=.++|+||.|++-+. ..++...++.++.
T Consensus 297 ~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNp--ns~islackki~T------- 365 (923)
T KOG0387|consen 297 ASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNP--NSKISLACKKIRT------- 365 (923)
T ss_pred cchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCC--ccHHHHHHHhccc-------
Confidence 111111 1 1246799999654321 111222234479999999998653 3345555666664
Q ss_pred eeEEEEeeccChHHHHHHH
Q psy8712 399 LQMIVCSATLHDFDVKKMA 417 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~ 417 (651)
.+.+.+|.|.-...+.+|-
T Consensus 366 ~~RiILSGTPiQNnL~ELw 384 (923)
T KOG0387|consen 366 VHRIILSGTPIQNNLTELW 384 (923)
T ss_pred cceEEeeCccccchHHHHH
Confidence 5677788885443444443
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.036 Score=64.06 Aligned_cols=153 Identities=10% Similarity=0.117 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccC-----CCCCee
Q psy8712 243 ATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFI-----TDPKIR 317 (651)
Q Consensus 243 ~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~-----~~~~i~ 317 (651)
..+...+.+-|+=+.+-||+|||.+++..|-.+++. -.--+-||+|||.+.-.-++...+....++ .+..+.
T Consensus 66 ~~~~~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~---YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e 142 (985)
T COG3587 66 QGSVRIDDKLNIDILMETGTGKTYTYLRTMFELHKK---YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLE 142 (985)
T ss_pred cccccCCCcceeeEEEecCCCceeeHHHHHHHHHHH---hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCccee
Confidence 445566788899999999999999998888444331 233467999999876544443333333322 212233
Q ss_pred EEEEeCCccHHHHHHHhccCCcEEEECchhhHH------HHhCCCcc--------------cCCc-ceEeeccchhhhhc
Q psy8712 318 ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMED------LISGGHLS--------------LTHC-RFFVLDEADGLLKQ 376 (651)
Q Consensus 318 v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~------ll~~~~l~--------------l~~l-~~lViDEaD~ll~~ 376 (651)
..... .......-.-...+.+++.|-..+.. ++.+.... +..+ -++||||=|+|...
T Consensus 143 ~~i~~--~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~ 220 (985)
T COG3587 143 SYIYD--EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD 220 (985)
T ss_pred EEeec--hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc
Confidence 22221 22222222223467888887655432 22221111 1122 28999999998762
Q ss_pred cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 377 GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 377 gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
-.....|...-| .-++=|+||.+.
T Consensus 221 --~k~~~~i~~l~p--------l~ilRfgATfkd 244 (985)
T COG3587 221 --DKTYGAIKQLNP--------LLILRFGATFKD 244 (985)
T ss_pred --hHHHHHHHhhCc--------eEEEEecccchh
Confidence 111222332222 356679999875
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.00056 Score=75.78 Aligned_cols=227 Identities=15% Similarity=0.238 Sum_probs=134.0
Q ss_pred CCccccccCceeeeccccccccccCCCCc-ccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccC
Q psy8712 79 KAKAQVISPTWILSVWDRDTAMAITPEGL-RCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDL 157 (651)
Q Consensus 79 ~~~~~~~~p~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 157 (651)
.+.+++++|++||+.|.......+..... .|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~------------------------------------------------ 196 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRS------------------------------------------------ 196 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccE------------------------------------------------
Confidence 56799999999999999998887764321 01
Q ss_pred CCCCCCCCcCCCCccCCCcccCccCcccCCCccc----cccccc-CCceeeeeccCcc--------cccccccc-----h
Q psy8712 158 GTDRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVI----GCLLDL-DNMTVAFTKNGQH--------LGLAFNIS-----Q 219 (651)
Q Consensus 158 g~~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~i----g~~~~~-~~~~~~~~~ng~~--------~g~af~~~-----~ 219 (651)
--.|||+.+-.+.+..+. |. ||+ |.++|+ +.|.+.+++..+. |+|+|+.. .
T Consensus 197 -----~cvyGG~~~~~Q~~~l~~-gv-----diviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 197 -----TCVYGGAPKGPQLRDLER-GV-----DVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred -----EEEeCCCCccHHHHHHhc-CC-----cEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 014888888777766543 32 555 999997 9999999999887 89999752 1
Q ss_pred hh----hhccCcchhhccc-cccccccCCCCCCC------------CCCCCeEEEecCCCCceeeeeccccccCCccccC
Q psy8712 220 QL----KNSAFYPAVVLKN-AEMSFNFGATPFKH------------EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVN 282 (651)
Q Consensus 220 ~~----~~~~~~p~~~~k~-~~~~~~f~~~~~~~------------~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~ 282 (651)
.+ +.-.+|.|-.-++ -.+.-.|-..|... +-.+...+|. ...|-..- ...+.... ..
T Consensus 266 ~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~--~~~K~~~l---~~lL~~~~-~~ 339 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD--ETAKLRKL---GKLLEDIS-SD 339 (519)
T ss_pred hcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC--HHHHHHHH---HHHHHHHh-cc
Confidence 11 1111111111111 00111111111100 0000000000 11111000 00000111 24
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc----CCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS----GVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~----~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.|-|+.-|.++...++... +++.++.|+.+..+....|+. .+.|||+|- +....++
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~-------~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLD 406 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKG-------WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLD 406 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcC-------cceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCC
Confidence 55689999999999999888887654 778899999887776666642 589999993 4556778
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCC
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~ 391 (651)
+.+|++|| ...|-..++..+.+.-.
T Consensus 407 i~dV~lVI--------nydfP~~vEdYVHRiGR 431 (519)
T KOG0331|consen 407 VPDVDLVI--------NYDFPNNVEDYVHRIGR 431 (519)
T ss_pred CccccEEE--------eCCCCCCHHHHHhhcCc
Confidence 88888887 33455556666555543
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0044 Score=70.21 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCCCHHHHH-HHHHcCCCCCcHHHHhhHHhHhcC------CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCC
Q psy8712 7 MGVLPEIGK-AVEEMDWLLPTDVQAEAIPLILGG------GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGK 79 (651)
Q Consensus 7 l~l~~~l~~-~l~~~~~~~pt~iQ~~aip~il~g------~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~ 79 (651)
+....++++ .++.+.| .+|.-|..+|.-|+.. -+=|+++.-|||||.+.++.+++.+-. +
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~------------G 311 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA------------G 311 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc------------C
Confidence 344455444 4477888 5799999999999865 245788889999999999999987755 5
Q ss_pred CccccccCceeeeccccccc
Q psy8712 80 AKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~ 99 (651)
.++...+||=-|+.|-...+
T Consensus 312 ~Q~ALMAPTEILA~QH~~~~ 331 (677)
T COG1200 312 YQAALMAPTEILAEQHYESL 331 (677)
T ss_pred CeeEEeccHHHHHHHHHHHH
Confidence 57777888755655544444
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.00052 Score=71.85 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=40.5
Q ss_pred cccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 211 LGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 211 ~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
|.|+|+.|+++|..++. .+.++||+|.|+++++|+|||.+|+++|
T Consensus 106 y~M~F~kPskIQe~aLP-----------------lll~~Pp~nlIaQsqsGtGKTaaFvL~M 150 (477)
T KOG0332|consen 106 YAMKFQKPSKIQETALP-----------------LLLAEPPQNLIAQSQSGTGKTAAFVLTM 150 (477)
T ss_pred HHhccCCcchHHHhhcc-----------------hhhcCCchhhhhhhcCCCchhHHHHHHH
Confidence 67999999999998872 4667899999999999999999999876
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0014 Score=74.41 Aligned_cols=70 Identities=13% Similarity=0.256 Sum_probs=55.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.+.|+..|..+...+...+ +++..++|+.+.....+.+. ...+|+|+|- +....+++
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~g-------~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD------vaaRGiDi 339 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKRG-------FKVAALHGDLPQEERDRALEKFKDGELRVLVATD------VAARGLDI 339 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHCC-------CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec------hhhccCCc
Confidence 3479999999999999888887765 88999999988766665553 3689999993 33556778
Q ss_pred CCcceEe
Q psy8712 360 THCRFFV 366 (651)
Q Consensus 360 ~~l~~lV 366 (651)
.++.+||
T Consensus 340 ~~v~~Vi 346 (513)
T COG0513 340 PDVSHVI 346 (513)
T ss_pred cccceeE
Confidence 8888886
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0036 Score=74.06 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=84.8
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeC-CccHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIG-GVNVKD 329 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~G-g~~~~~ 329 (651)
.++.|+.+.||-|||.++.+++.. ..-.+.-+-|++.+--||..=.+++..+..+++ ++|.++.. +.+..+
T Consensus 182 h~G~IAEM~TGEGKTLvAtlp~yL-----nAL~GkgVHvVTVNDYLA~RDaewmgply~fLG---Lsvg~i~~~~~~~~~ 253 (1112)
T PRK12901 182 HQGKIAEMATGEGKTLVATLPVYL-----NALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHG---LSVDCIDKHQPNSEA 253 (1112)
T ss_pred cCCceeeecCCCCchhHHHHHHHH-----HHHcCCCcEEEEechhhhhccHHHHHHHHHHhC---CceeecCCCCCCHHH
Confidence 478999999999999999887611 122344577889999999999999988888886 99998876 334443
Q ss_pred HHHHhccCCcEEEECchhh-HHHHhCCC------cccCCcceEeeccchhhh
Q psy8712 330 QMSVLSSGVDIVVGTPGRM-EDLISGGH------LSLTHCRFFVLDEADGLL 374 (651)
Q Consensus 330 q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l~~l~~lViDEaD~ll 374 (651)
..... .+||..||..-+ .|+|+.+. .....+.+.||||+|.+|
T Consensus 254 rr~aY--~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 254 RRKAY--NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HHHhC--CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 33322 589999998877 55555432 234678899999999775
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.01 Score=67.83 Aligned_cols=152 Identities=12% Similarity=0.110 Sum_probs=95.3
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHH
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVK 328 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~ 328 (651)
....+-|.....|-|||.=.+...+.+.+.. .++|. ||+||+--| .+++++|.++.+ .++|...+|.....
T Consensus 416 k~~l~gILADEMGLGKTiQvIaFlayLkq~g--~~gpH-LVVvPsSTl----eNWlrEf~kwCP--sl~Ve~YyGSq~ER 486 (941)
T KOG0389|consen 416 KKKLNGILADEMGLGKTIQVIAFLAYLKQIG--NPGPH-LVVVPSSTL----ENWLREFAKWCP--SLKVEPYYGSQDER 486 (941)
T ss_pred HccccceehhhccCcchhHHHHHHHHHHHcC--CCCCc-EEEecchhH----HHHHHHHHHhCC--ceEEEeccCcHHHH
Confidence 3455667888899999988777666665543 35554 788897554 567777777754 79999999988765
Q ss_pred HHHHHh-c---cCCcEEEECchhhHHHH-hCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEE
Q psy8712 329 DQMSVL-S---SGVDIVVGTPGRMEDLI-SGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403 (651)
Q Consensus 329 ~q~~~L-~---~~~dIlV~TP~rL~~ll-~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~ 403 (651)
.+.+.. . ...+|+|+|-.-...-- .+..+.-.++.++|+||+|.|=+..- .-.+.++..- . .+.++
T Consensus 487 ~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S-eRy~~LM~I~-A-------n~RlL 557 (941)
T KOG0389|consen 487 RELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS-ERYKHLMSIN-A-------NFRLL 557 (941)
T ss_pred HHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch-HHHHHhcccc-c-------cceEE
Confidence 555432 2 25899999964332100 01123345678999999998866431 2233333222 1 35677
Q ss_pred EeeccChHHHHHHHH
Q psy8712 404 CSATLHDFDVKKMAE 418 (651)
Q Consensus 404 ~SATl~~~~v~~l~~ 418 (651)
+|.|.=..++.+|..
T Consensus 558 LTGTPLQNNL~ELiS 572 (941)
T KOG0389|consen 558 LTGTPLQNNLKELIS 572 (941)
T ss_pred eeCCcccccHHHHHH
Confidence 788853335555444
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.016 Score=64.74 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=34.5
Q ss_pred CCcHHHHhhHHhHhcCCc-eEeeecCCCCccceeehhhHHHHHH
Q psy8712 24 LPTDVQAEAIPLILGGGD-VLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
...+-|.+|+......++ .++++|+|+|||.....-+.|.+..
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~ 228 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ 228 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc
Confidence 455779999998888866 5788999999999887777776655
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.019 Score=67.74 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=37.6
Q ss_pred CCCCCcHHHHhhHHhH----hcCCceEeeecCCCCccceeehhhHHHHH
Q psy8712 21 DWLLPTDVQAEAIPLI----LGGGDVLMAAETGSGKTGAFCLPIIQIVC 65 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKT~af~lp~l~~~~ 65 (651)
-|..+.|.|.+.+..+ ..|+.+++.||||+|||+|-+.|+|....
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~ 55 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQ 55 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHH
Confidence 4566689999887665 47899999999999999999999998554
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1477|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.0052 Score=68.20 Aligned_cols=113 Identities=27% Similarity=0.434 Sum_probs=80.6
Q ss_pred ceeEEEEEecc---CCceeecccccccccc--CCCCCCCCCcCCCCccCCC---cccCccCcccCCCcccccccccCCce
Q psy8712 130 GKYYYEATVTD---EGLCRVGWSTSQAVRD--LGTDRFGFGFGGTGKKSNN---KQFDNYGEAFGMHDVIGCLLDLDNMT 201 (651)
Q Consensus 130 ~~~~~e~~~~~---~~~~~~~~~~~~~~~~--~g~~~~~~~~gg~~~ks~~---~~~~~~g~~~~~~d~ig~~~~~~~~~ 201 (651)
|-||||+.+.| +|..-+|......+.+ .|--..+++|-|+.=.-++ ..+..||.+|+.+|.|||-++.-+.+
T Consensus 79 ~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~q~ 158 (469)
T KOG1477|consen 79 GIYYFEFDILDYGIEGRIKIGFLIDSFSIIESEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEITQE 158 (469)
T ss_pred ccceeeeeHHHhhhhhceEEEEEecccccccccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhhhe
Confidence 68999999985 4455555555444443 5555558889887666555 67899999999999999999999999
Q ss_pred eeeeccCcccccccccc--hhhhhccCcchhhccccccccccC
Q psy8712 202 VAFTKNGQHLGLAFNIS--QQLKNSAFYPAVVLKNAEMSFNFG 242 (651)
Q Consensus 202 ~~~~~ng~~~g~af~~~--~~~~~~~~~p~~~~k~~~~~~~f~ 242 (651)
|.|+|||..+|..+..- .-++...-+-.....|=++..+|+
T Consensus 159 i~~t~~g~~~~~~~~~~~~~~~~~~~n~~~~~s~~~~I~~~~g 201 (469)
T KOG1477|consen 159 IFFTKNGTEVGEIIKPLSPDLLEENGNLAWLFSPNEEVEVNFG 201 (469)
T ss_pred eeeccCccccccccccccccccccccceeeEeccCceeeeeec
Confidence 99999999999999762 222221111223344556666666
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.1 Score=60.34 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=27.3
Q ss_pred cHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 26 TDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 26 t~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
++.|.+|+-..+..+-+++.+++|+|||.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt 182 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTT 182 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 58999999999999999999999999993
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.059 Score=62.01 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=27.1
Q ss_pred cHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 26 TDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 26 t~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
.+.|++|+-.++..+-+++.++.|||||.
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt 175 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTT 175 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHH
Confidence 47999999999999999999999999994
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.045 Score=63.73 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCcHHHHhhHHhHhcC-CceEeeecCCCCccce
Q psy8712 23 LLPTDVQAEAIPLILGG-GDVLMAAETGSGKTGA 55 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g-~dvl~~a~TGsGKT~a 55 (651)
..+++.|.+|+..++.. ..+++.+|+|||||-.
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t 189 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT 189 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH
Confidence 35689999999999977 6788999999999943
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.058 Score=63.69 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=30.6
Q ss_pred HcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCcc
Q psy8712 19 EMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 19 ~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT 53 (651)
..++ .+++-|.+|+..++.++-+++.++.|||||
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKT 352 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKT 352 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHH
Confidence 3555 579999999999999999999999999999
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >KOG4030|consensus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.019 Score=52.85 Aligned_cols=154 Identities=26% Similarity=0.413 Sum_probs=104.2
Q ss_pred ccCceeeeccccccccccCCCCc-ccccccccccccccccccccCCceeEEEEEeccCCceeecccccccccc---CCCC
Q psy8712 85 ISPTWILSVWDRDTAMAITPEGL-RCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRD---LGTD 160 (651)
Q Consensus 85 ~~p~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~---~g~~ 160 (651)
.+|+..|.+.--..-.-|-+.|. .| .-.|+-+|..+. +.|-|||++|..-|.--+|..|+...++ .|-|
T Consensus 25 e~P~V~LD~~hMG~dVvilk~g~Ric------GtGG~lAtaPlv-QnKsYFevkiQ~tG~WgiGlat~q~~l~~~p~g~d 97 (197)
T KOG4030|consen 25 EVPTVRLDVGHMGKDVVILKEGERIC------GTGGALATAPLV-QNKSYFEVKIQQTGTWGIGLATKQSPLDKVPGGCD 97 (197)
T ss_pred cCCcEEeehhccCCcEEEEecCcEEe------ccCceeeeeeee-cccceEEEEEeecceeeeeeeeccCccccCCCCCc
Confidence 34777776665554444444443 33 234555665554 6799999999999999999999999888 8899
Q ss_pred CCCCCcCCCCccCCCcccCcc--Cccc-CCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccc-cc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNY--GEAF-GMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKN-AE 236 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~--g~~~-~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~-~~ 236 (651)
..||+.-..|--.||.....- -..| ..|||+|.-.|.- ++.|--|||-+-.-|. -++. ++||.|-..| |-
T Consensus 98 ~~sw~~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayDHV--ELnfY~NGKn~e~p~~---gvRG-~vyPvvYVddsAI 171 (197)
T KOG4030|consen 98 EKSWGIRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYDHV--ELNFYVNGKNVEDPIT---GVRG-PVYPVVYVDDSAI 171 (197)
T ss_pred ceeEEEccCCchhcccHHHhcCccccCCccCcEEEEEeeeE--EEEEEEcCceeccccc---cccc-ceeeEEEeCCceE
Confidence 999999998888877543211 1112 4699999887753 5677788876654332 3444 8999998887 44
Q ss_pred cccccCCCCCCCCCCCC
Q psy8712 237 MSFNFGATPFKHEPPKD 253 (651)
Q Consensus 237 ~~~~f~~~~~~~~~~~~ 253 (651)
+.+-| ..|.+.||.+
T Consensus 172 LD~~f--~nF~h~PPpG 186 (197)
T KOG4030|consen 172 LDLKF--KNFTHAPPPG 186 (197)
T ss_pred EEEEe--cccccCCCCC
Confidence 44444 3455655543
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.091 Score=52.76 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=41.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhc---CCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILG---GGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~---g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.|.-+--+.+|+=.++ .+ ....|.|.+.+..+.. |.+.+++.-.|.||| .-++|++..++.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKT-sVI~Pmla~~LA 67 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SN-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKT-SVIVPMLALALA 67 (229)
T ss_pred CCCchhChHHHHHHHH-cC-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCcc-chHHHHHHHHHc
Confidence 3444444444443332 23 3578999998888764 678999999999999 567888875544
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.034 Score=64.46 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=34.0
Q ss_pred CCcHHHHhhHHhHh----cCCceEeeecCCCCccceeehhhHHHHH
Q psy8712 24 LPTDVQAEAIPLIL----GGGDVLMAAETGSGKTGAFCLPIIQIVC 65 (651)
Q Consensus 24 ~pt~iQ~~aip~il----~g~dvl~~a~TGsGKT~af~lp~l~~~~ 65 (651)
.|.|.|..-+-.++ .+.+.++..|||||||++.+-..|....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q 66 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQ 66 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHH
Confidence 68999998887776 4568999999999999888777766443
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.096 Score=63.40 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=30.1
Q ss_pred HcCCCCCcHHHHhhHHhHhcCCc-eEeeecCCCCccce
Q psy8712 19 EMDWLLPTDVQAEAIPLILGGGD-VLMAAETGSGKTGA 55 (651)
Q Consensus 19 ~~~~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a 55 (651)
+.|+ .+++-|.+||..++.+++ +++.+..|+|||..
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~ 378 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM 378 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 3455 579999999999999776 57889999999953
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.15 Score=60.63 Aligned_cols=45 Identities=27% Similarity=0.419 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC-CceEeeecCCCCcc
Q psy8712 8 GVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG-GDVLMAAETGSGKT 53 (651)
Q Consensus 8 ~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g-~dvl~~a~TGsGKT 53 (651)
++++..+...-+.++ .+++-|.+|+..++.+ +=+++.++.|+|||
T Consensus 337 ~~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKT 382 (744)
T TIGR02768 337 GVSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKS 382 (744)
T ss_pred CCCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHH
Confidence 355555554444444 4799999999999875 55789999999998
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.071 Score=58.07 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=83.1
Q ss_pred eEEEecCCCCceeeeeccc-cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHH
Q psy8712 254 YIAVCNAPKQNVKHSESAD-VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMS 332 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~-~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~ 332 (651)
-|.....|.|||.-++..+ + ...+...||++|+.+|+ |..+.+.++... .+++...+|. .......
T Consensus 207 GiLADEMGMGKTIQtIaLlla-------e~~ra~tLVvaP~VAlm-QW~nEI~~~T~g----slkv~~YhG~-~R~~nik 273 (791)
T KOG1002|consen 207 GILADEMGMGKTIQTIALLLA-------EVDRAPTLVVAPTVALM-QWKNEIERHTSG----SLKVYIYHGA-KRDKNIK 273 (791)
T ss_pred ceehhhhccchHHHHHHHHHh-------ccccCCeeEEccHHHHH-HHHHHHHHhccC----ceEEEEEecc-cccCCHH
Confidence 3444567899998766544 2 22334599999999975 556666666542 3666555554 3333333
Q ss_pred HhccCCcEEEECchhhHHHHhCCC--------c-----ccCCc--ceEeeccchhhhhccchHHHHHHHhcCCCccCCCC
Q psy8712 333 VLSSGVDIVVGTPGRMEDLISGGH--------L-----SLTHC--RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGK 397 (651)
Q Consensus 333 ~L~~~~dIlV~TP~rL~~ll~~~~--------l-----~l~~l--~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~ 397 (651)
.| .+.|+|++|-..+...+++.. + .|.++ -.+|+||||.+-+.. ....+.+..|..
T Consensus 274 el-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~--snTArAV~~L~t------ 344 (791)
T KOG1002|consen 274 EL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQ--SNTARAVFALET------ 344 (791)
T ss_pred Hh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccc--ccHHHHHHhhHh------
Confidence 33 258999999988877765421 1 13333 368999999886532 112222222221
Q ss_pred ceeEEEEeeccChHHHHHHH
Q psy8712 398 RLQMIVCSATLHDFDVKKMA 417 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~ 417 (651)
....++|.|.-...|-++.
T Consensus 345 -t~rw~LSGTPLQNrigEly 363 (791)
T KOG1002|consen 345 -TYRWCLSGTPLQNRIGELY 363 (791)
T ss_pred -hhhhhccCCcchhhHHHHH
Confidence 3456788885443555443
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.51 Score=56.91 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=83.8
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKD 329 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~ 329 (651)
..+|.|-..-.|-|||+-.+..++.+.... .-.+|. ||++|.--+.. ..+.|.... . +++++..|.....+
T Consensus 388 ~~~n~ILADEmgLgktvqti~fl~~l~~~~-~~~gpf-lvvvplst~~~-W~~ef~~w~---~---mn~i~y~g~~~sr~ 458 (1373)
T KOG0384|consen 388 KRNNCILADEMGLGKTVQTITFLSYLFHSL-QIHGPF-LVVVPLSTITA-WEREFETWT---D---MNVIVYHGNLESRQ 458 (1373)
T ss_pred hcccceehhhcCCCcchHHHHHHHHHHHhh-hccCCe-EEEeehhhhHH-HHHHHHHHh---h---hceeeeecchhHHH
Confidence 456778888889999998776663332211 123444 67788765433 223333333 2 88888888876555
Q ss_pred HHHHhc----c-----CCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 330 QMSVLS----S-----GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 330 q~~~L~----~-----~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
.++..+ . .++++++|-+.++.- ...+.--.-++++|||||+|-+. ...+...+..+.. -.
T Consensus 459 ~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~-------~~ 527 (1373)
T KOG0384|consen 459 LIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKM-------NH 527 (1373)
T ss_pred HHHHHHheecCCccccccceeehhhHHHhcc--HhhhccCCcceeeecHHhhcCch--HHHHHHHHHHhcc-------cc
Confidence 444321 1 379999998776431 11121123368999999998642 2223333444433 23
Q ss_pred EEEEeeccChHHHHHHH
Q psy8712 401 MIVCSATLHDFDVKKMA 417 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~ 417 (651)
-++.|.|.-...+..|.
T Consensus 528 rllitgTPlQNsikEL~ 544 (1373)
T KOG0384|consen 528 RLLITGTPLQNSLKELW 544 (1373)
T ss_pred eeeecCCCccccHHHHH
Confidence 45566664333555554
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.37 Score=58.94 Aligned_cols=46 Identities=26% Similarity=0.221 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhc-CCceEeeecCCCCcc
Q psy8712 7 MGVLPEIGKAVEEMDWLLPTDVQAEAIPLILG-GGDVLMAAETGSGKT 53 (651)
Q Consensus 7 l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~-g~dvl~~a~TGsGKT 53 (651)
.++.+..+++....++ .+++-|.+|+..+.. ++=+++.++-|+|||
T Consensus 365 ~~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKT 411 (1102)
T PRK13826 365 HGVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKT 411 (1102)
T ss_pred CCCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHH
Confidence 3566776766655554 579999999998864 455888999999999
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.35 Score=54.77 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=39.8
Q ss_pred HHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHH
Q psy8712 16 AVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63 (651)
Q Consensus 16 ~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~ 63 (651)
.+...+...+..-|..|+..+|+..=-|+++|+|+|||.+-.--+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl 449 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHL 449 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHH
Confidence 455678888899999999999999999999999999997665444443
|
|
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.049 Score=61.68 Aligned_cols=123 Identities=19% Similarity=0.154 Sum_probs=69.8
Q ss_pred CCCCCCeEEEecCCCCceeeeeccc-----cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEe
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESAD-----VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLII 322 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~-----~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~ 322 (651)
.-+|.+-|...+-|-|||..-+..+ +...+.......-.+|||||-. |..|.+.++.+-... ..++|.+.+
T Consensus 342 ~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~~Ev~~rl~~---n~LsV~~~H 417 (901)
T KOG4439|consen 342 SQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWEAEVARRLEQ---NALSVYLYH 417 (901)
T ss_pred cCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH-HHHHHHHHHHHHHhh---cceEEEEec
Confidence 3467777888889999998544333 1122211112222589999975 455555555443322 238888777
Q ss_pred CCccHHHHHHHhccCCcEEEECchhhHH----HHhCC--CcccCCc--ceEeeccchhhhh
Q psy8712 323 GGVNVKDQMSVLSSGVDIVVGTPGRMED----LISGG--HLSLTHC--RFFVLDEADGLLK 375 (651)
Q Consensus 323 Gg~~~~~q~~~L~~~~dIlV~TP~rL~~----ll~~~--~l~l~~l--~~lViDEaD~ll~ 375 (651)
|....+-....|+ ..||||+|-.-+.. -...+ .-.+-+| ..||+||||.+-+
T Consensus 418 G~n~r~i~~~~L~-~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 418 GPNKREISAKELR-KYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred CCccccCCHHHHh-hcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 7664333334443 48999999654432 11111 1112233 4799999997754
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.1 Score=54.54 Aligned_cols=35 Identities=37% Similarity=0.378 Sum_probs=25.4
Q ss_pred CcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhH
Q psy8712 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61 (651)
Q Consensus 25 pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l 61 (651)
+|+-|.++|.. ..+.++|.|..|||||.+-+-=++
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~ 35 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA 35 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH
Confidence 47889999988 788999999999999965543333
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.85 Score=49.49 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=32.4
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhcc
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMY 422 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~ 422 (651)
+.+.++++||++-+.-. ...+...+..+.... .....++++|||.....+.+.++.|..
T Consensus 213 l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~--~~~~~lLVLsAts~~~~l~evi~~f~~ 271 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGAD--TPVQRLLLLNATSHGDTLNEVVQAYRS 271 (374)
T ss_pred hcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccC--CCCeEEEEecCccChHHHHHHHHHHHH
Confidence 45567888898754321 112223333322110 012457889999987666777776643
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.092 Score=54.70 Aligned_cols=145 Identities=12% Similarity=0.066 Sum_probs=87.8
Q ss_pred CCCCeEEEecCCCCceeeeeccc--cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESAD--VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV 327 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~--~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~ 327 (651)
...+++.-.++|.||.-...-.+ ..+ ....++|.++.+..|-....+-++.++... +.+..+..- ..
T Consensus 61 ~R~Gf~lGDGtGvGKGR~iAgiI~~n~l------~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~----i~v~~l~~~-~~ 129 (303)
T PF13872_consen 61 SRAGFFLGDGTGVGKGRQIAGIILENWL------RGRKRAVWVSVSNDLKYDAERDLRDIGADN----IPVHPLNKF-KY 129 (303)
T ss_pred cCcEEEeccCCCcCccchhHHHHHHHHH------cCCCceEEEECChhhhhHHHHHHHHhCCCc----ccceechhh-cc
Confidence 35678888888888876533222 221 234579999999999999999998887532 333332210 00
Q ss_pred HHHHHHhccCCcEEEECchhhHHHHhCC---Cccc--------CC-cceEeeccchhhhhccc--------hHHHHHHHh
Q psy8712 328 KDQMSVLSSGVDIVVGTPGRMEDLISGG---HLSL--------TH-CRFFVLDEADGLLKQGY--------GNLIDRMHK 387 (651)
Q Consensus 328 ~~q~~~L~~~~dIlV~TP~rL~~ll~~~---~l~l--------~~-l~~lViDEaD~ll~~gf--------~~~i~~il~ 387 (651)
. ....+ .-.||.+|-..|...-..+ .-.+ .+ =.+||+||||.+-+..- ...+..+.+
T Consensus 130 ~-~~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~ 206 (303)
T PF13872_consen 130 G-DIIRL--KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQN 206 (303)
T ss_pred C-cCCCC--CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHH
Confidence 0 00112 2358888877665543211 1111 11 23899999998765321 234666777
Q ss_pred cCCCccCCCCceeEEEEeeccChHHHHHH
Q psy8712 388 QIPKITSDGKRLQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 388 ~lp~~~~~~~~~Q~l~~SATl~~~~v~~l 416 (651)
.||. .+++.+|||--. +.+++
T Consensus 207 ~LP~-------ARvvY~SATgas-ep~Nm 227 (303)
T PF13872_consen 207 RLPN-------ARVVYASATGAS-EPRNM 227 (303)
T ss_pred hCCC-------CcEEEecccccC-CCcee
Confidence 8876 679999999865 55544
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.045 Score=55.70 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=36.2
Q ss_pred cccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 211 LGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 211 ~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
|.+||+.||.+|..++.|-+. .+|.|+++++|+|||.++...
T Consensus 43 Y~yGfekPS~IQqrAi~~Ilk-------------------GrdViaQaqSGTGKTa~~si~ 84 (400)
T KOG0328|consen 43 YAYGFEKPSAIQQRAIPQILK-------------------GRDVIAQAQSGTGKTATFSIS 84 (400)
T ss_pred HHhccCCchHHHhhhhhhhhc-------------------ccceEEEecCCCCceEEEEee
Confidence 789999999999999865554 459999999999999998754
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.066 Score=62.63 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q 330 (651)
..+.|+-+.||-|||.++++++.- ..-.+.-+.+++..--||.--.+++..+..+++ +++.++..+.+..++
T Consensus 93 h~g~iaEM~TGEGKTL~atlp~yl-----naL~gkgVhvVTvNdYLA~RDae~m~~l~~~LG---lsvG~~~~~m~~~ek 164 (822)
T COG0653 93 HLGDIAEMRTGEGKTLVATLPAYL-----NALAGKGVHVVTVNDYLARRDAEWMGPLYEFLG---LSVGVILAGMSPEEK 164 (822)
T ss_pred cCCceeeeecCCchHHHHHHHHHH-----HhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcC---CceeeccCCCChHHH
Confidence 357899999999999999987721 122344688899999999999999999988886 999999999987777
Q ss_pred HHHhccCCcEEEECchhh-HHHHhCCC------cccCCcceEeeccchhhh
Q psy8712 331 MSVLSSGVDIVVGTPGRM-EDLISGGH------LSLTHCRFFVLDEADGLL 374 (651)
Q Consensus 331 ~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~l~~l~~lViDEaD~ll 374 (651)
.... .+||..+|-..+ .|.++.+. .....+.+-|+||+|.++
T Consensus 165 ~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 165 RAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 6655 479999998887 44444331 124568899999999765
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.029 Score=59.45 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=38.9
Q ss_pred ccccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 210 HLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 210 ~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
.|++||+.||.+|..++.|+|.. .|.+++.++|+|||.++..++
T Consensus 41 iy~yGFekPSaIQqraI~p~i~G-------------------~dv~~qaqsgTgKt~af~i~i 84 (397)
T KOG0327|consen 41 IYAYGFEKPSAIQQRAILPCIKG-------------------HDVIAQAQSGTGKTAAFLISI 84 (397)
T ss_pred HHhhccCCchHHHhccccccccC-------------------CceeEeeeccccchhhhHHHH
Confidence 48999999999999999999986 488899999999999966543
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.021 Score=51.28 Aligned_cols=50 Identities=38% Similarity=0.438 Sum_probs=36.6
Q ss_pred CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
+.+++.+|||||||..++..+.+.... ......++++|+..+..+..+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~ 50 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERL 50 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHH
Confidence 368999999999999988888775543 11346888899877766655544
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.22 Score=54.09 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.6
Q ss_pred CcHHHHhhHHhH------hcCCceEeeecCCCCccc
Q psy8712 25 PTDVQAEAIPLI------LGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 25 pt~iQ~~aip~i------l~g~dvl~~a~TGsGKT~ 54 (651)
+++-|++++..+ ..+..+++.++-|+|||.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~ 37 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF 37 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH
Confidence 567899998888 678899999999999993
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.23 Score=59.70 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCeEEEecCCCCceeeeec--cc-cccCCccccCCCCe-EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH
Q psy8712 252 KDYIAVCNAPKQNVKHSES--AD-VSAGPVKLVNNAPQ-AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV 327 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~--a~-~~~~~~~~~~~~p~-aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~ 327 (651)
-.-|-|.+.|-|||.=++- |. ....+.....-.+. .||+||. .|+--...++.+|..+ +++...+|+-..
T Consensus 995 LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pf-----L~v~~yvg~p~~ 1068 (1549)
T KOG0392|consen 995 LHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPF-----LKVLQYVGPPAE 1068 (1549)
T ss_pred ccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcch-----hhhhhhcCChHH
Confidence 3468999999999975433 22 22222222222333 8999997 4666556666666543 667777776665
Q ss_pred HHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeec
Q psy8712 328 KDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSAT 407 (651)
Q Consensus 328 ~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SAT 407 (651)
....+.--++.+|+|++-+.+.+-+. .+.-.+-.++|+||-|.|=+. ...+-+.++.+.. -..+.+|.|
T Consensus 1069 r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a-------~hRLILSGT 1137 (1549)
T KOG0392|consen 1069 RRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRA-------NHRLILSGT 1137 (1549)
T ss_pred HHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHHhh-------cceEEeeCC
Confidence 55544444568999999876642110 011123459999999987542 2334445555544 244667788
Q ss_pred cChHHHHHHHH
Q psy8712 408 LHDFDVKKMAE 418 (651)
Q Consensus 408 l~~~~v~~l~~ 418 (651)
.-..+|.++..
T Consensus 1138 PIQNnvleLWS 1148 (1549)
T KOG0392|consen 1138 PIQNNVLELWS 1148 (1549)
T ss_pred CcccCHHHHHH
Confidence 64445555443
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.24 Score=57.73 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=25.4
Q ss_pred cEEEECchhhHHHHhCCCcccCCcceEeeccchhh
Q psy8712 339 DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGL 373 (651)
Q Consensus 339 dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~l 373 (651)
-|..+|-+-++.++.++ +..+.++|+||.|..
T Consensus 474 ~i~fctvgvllr~~e~g---lrg~sh~i~deiher 505 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMENG---LRGISHVIIDEIHER 505 (1282)
T ss_pred ceeeeccchhhhhhhhc---ccccccccchhhhhh
Confidence 58888988888877765 456779999999954
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.067 Score=44.27 Aligned_cols=50 Identities=6% Similarity=0.135 Sum_probs=37.1
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQI 304 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~ 304 (651)
+++.+..|+|||......++......... +.++++++||+..+.++.+.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 56699999999977666553333211222 668999999999999988887
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.093 Score=47.43 Aligned_cols=20 Identities=0% Similarity=-0.178 Sum_probs=14.6
Q ss_pred CeEEEecCCCCceeeeeccc
Q psy8712 253 DYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~ 272 (651)
-.++.+.+|+|||.......
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHH
Confidence 46788999999999865544
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.45 Score=56.15 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCc-eEeeecCCCCccceeehhhHHHHHH
Q psy8712 8 GVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGD-VLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 8 ~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.+.|.+.+. -...+..-|++|+-.+|..+| .++.+-+|+|||-.-+ -++++++.
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~ 711 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVA 711 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHH
Confidence 355665554 234678899999999999887 5778999999995433 34444443
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.29 Score=58.28 Aligned_cols=82 Identities=13% Similarity=0.004 Sum_probs=62.5
Q ss_pred cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh-----
Q psy8712 336 SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD----- 410 (651)
Q Consensus 336 ~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~----- 410 (651)
....|++.||..|..-+-.+.++++.|..|||||||++.+..-...|.++++.-.+ ..=+.+|||....
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~------~gfIkafSdsP~~~~~g~ 79 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNK------TGFIKAFSDNPEAFTMGF 79 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCC------CcceEEecCCCcccccch
Confidence 34679999999998777788899999999999999999876555567777766544 4679999999764
Q ss_pred HHHHHHHHHhccC
Q psy8712 411 FDVKKMAERLMYF 423 (651)
Q Consensus 411 ~~v~~l~~~~l~~ 423 (651)
..+....+.+.-.
T Consensus 80 ~~l~~vmk~L~i~ 92 (814)
T TIGR00596 80 SPLETKMRNLFLR 92 (814)
T ss_pred HHHHHHHHHhCcC
Confidence 2355555555433
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG1477|consensus | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.08 Score=58.95 Aligned_cols=63 Identities=37% Similarity=0.577 Sum_probs=47.7
Q ss_pred cCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccc--cccccccCCCCCC
Q psy8712 181 YGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKN--AEMSFNFGATPFK 247 (651)
Q Consensus 181 ~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~--~~~~~~f~~~~~~ 247 (651)
||+-|+.||+|||.+|+-++...|+|||.++|.+|-.|... ++|.+.++- -.+..||+.-+|.
T Consensus 20 ~g~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~----~~~dvg~~~~~~~~~~N~~~~~Fe 84 (469)
T KOG1477|consen 20 YGPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPPAL----LYHDVGVVQAGEPLPANFGIYYFE 84 (469)
T ss_pred cCCcCCccccccceEeccCCceeEEEEcCCcceeeecCccc----cCCCcceeeCCCCCCcccccceee
Confidence 89999999999999999999999999999999999988655 444444332 2333344444433
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.46 Score=56.61 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=77.9
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---cHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCC
Q psy8712 5 EEMGVLPEIGKAVE-----EMDWLLP---TDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKG 76 (651)
Q Consensus 5 ~~l~l~~~l~~~l~-----~~~~~~p---t~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~ 76 (651)
+.+++.+++.+++. .+||..| ||+|.++||.++.++|+++.|+||||||+||+||+++.++.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 57889999999998 7999999 99999999999999999999999999999999999987754
Q ss_pred CCCCccccccCceeeeccccccccccC
Q psy8712 77 QGKAKAQVISPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 77 ~~~~~~~~~~p~~~l~~~~~~~~~~~~ 103 (651)
...+.+++|+.+|+.++.+....+.
T Consensus 135 --g~~v~IVTpTrELA~Qdae~m~~L~ 159 (970)
T PRK12899 135 --GKPVHLVTVNDYLAQRDCEWVGSVL 159 (970)
T ss_pred --cCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 1236788999999999999887764
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.42 Score=57.82 Aligned_cols=94 Identities=13% Similarity=0.189 Sum_probs=70.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh----ccCCcEEEECchhhHHHHhCCCc
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL----SSGVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L----~~~~dIlV~TP~rL~~ll~~~~l 357 (651)
.++-|+.+|.|-.+=..++.+.++.+-. ..++.+..|-.+..+..+.+ ....||+|||. +-...+
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVP-----EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGI 869 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVP-----EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGI 869 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCC-----ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCc
Confidence 4567999999999988888888888764 58888888877765544333 35789999995 556678
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCC
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIP 390 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp 390 (651)
+..+...+||+-||++- ..++.++-.+.-
T Consensus 870 DIPnANTiIIe~AD~fG----LsQLyQLRGRVG 898 (1139)
T COG1197 870 DIPNANTIIIERADKFG----LAQLYQLRGRVG 898 (1139)
T ss_pred CCCCCceEEEecccccc----HHHHHHhccccC
Confidence 89999999999999762 234444544443
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.98 Score=49.34 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=70.9
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEe-CC-HHHHHHHHHHHHHhhccCCCCCeeEEEEeCCcc
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIE-PS-RELAEQTFNQIIKFKKFITDPKIRELLIIGGVN 326 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~-PT-reLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~ 326 (651)
..|..++.++.+|+|||++....++...... ...+..+.++. -| |.-+.. +++.++..++ +.+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~-~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lg---vpv-------- 236 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINS-DDKSLNIKIITIDNYRIGAKK---QIQTYGDIMG---IPV-------- 236 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhh-ccCCCeEEEEeccCccHHHHH---HHHHHhhcCC---cce--------
Confidence 3467889999999999998765442221110 01222333333 22 222221 2333333222 211
Q ss_pred HHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 327 VKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 327 ~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
.++-++..+...+. .+++.++|+||++.++.... ....+..++..... . .--++.+|
T Consensus 237 -------------~~~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~---~--~e~~LVls 294 (388)
T PRK12723 237 -------------KAIESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR---D--AEFHLAVS 294 (388)
T ss_pred -------------EeeCcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC---C--CeEEEEEc
Confidence 11223333433332 24678899999998875321 22344444444322 0 13678999
Q ss_pred eccChHHHHHHHHHhc
Q psy8712 406 ATLHDFDVKKMAERLM 421 (651)
Q Consensus 406 ATl~~~~v~~l~~~~l 421 (651)
||....++.+....+-
T Consensus 295 at~~~~~~~~~~~~~~ 310 (388)
T PRK12723 295 STTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 9998767777777763
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.22 Score=54.88 Aligned_cols=289 Identities=19% Similarity=0.228 Sum_probs=187.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCC-CCCc
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQ-GKAK 81 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~-~~~~ 81 (651)
.|.+-.++..+...++..|+..|||||+.+||.|.+|+|++++|+||||||.||++|++..+.+.-......... +.++
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 467777888899999999999999999999999999999999999999999999999999988743332222222 3578
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
+++++|++||..|.+....-++.. +.-
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~-----------------------------------------------------s~~ 181 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYL-----------------------------------------------------SGM 181 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhccc-----------------------------------------------------ccc
Confidence 999999999999988877555421 011
Q ss_pred CCC-CcCCCCccCCCcccCccCcccCCCccc----cccccc-CCceeeeeccCcc--------cc-cccccc--------
Q psy8712 162 FGF-GFGGTGKKSNNKQFDNYGEAFGMHDVI----GCLLDL-DNMTVAFTKNGQH--------LG-LAFNIS-------- 218 (651)
Q Consensus 162 ~~~-~~gg~~~ks~~~~~~~~g~~~~~~d~i----g~~~~~-~~~~~~~~~ng~~--------~g-~af~~~-------- 218 (651)
.+. .|||+.--++.+. ...-=|++ |.|.|+ +.|.|++...+.. +. |+|..+
T Consensus 182 ~~~~~ygg~~~~~q~~~------~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~ 255 (482)
T KOG0335|consen 182 KSVVVYGGTDLGAQLRF------IKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQL 255 (482)
T ss_pred eeeeeeCCcchhhhhhh------hccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhccc
Confidence 111 3555322221111 11111333 999997 9999999999866 56 888653
Q ss_pred ----hhhhhccCcchhhcccccc-ccccCCCCCCCCCCCCeEEEecCCCCceee-----eeccc-------cccC-----
Q psy8712 219 ----QQLKNSAFYPAVVLKNAEM-SFNFGATPFKHEPPKDYIAVCNAPKQNVKH-----SESAD-------VSAG----- 276 (651)
Q Consensus 219 ----~~~~~~~~~p~~~~k~~~~-~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~-----~~~a~-------~~~~----- 276 (651)
...+...+|+|...++..- .+.|-... -.+++.+..|+.--.+ ++--. -.+.
T Consensus 256 ~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~------yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~ 329 (482)
T KOG0335|consen 256 GMPPKNNRQTLLFSATFPKEIQRLAADFLKDN------YIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGP 329 (482)
T ss_pred CCCCccceeEEEEeccCChhhhhhHHHHhhcc------ceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCC
Confidence 2233345555555554321 12221111 3466666666433222 22110 0000
Q ss_pred CccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc---c-CCcEEEECchhhHHHH
Q psy8712 277 PVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS---S-GVDIVVGTPGRMEDLI 352 (651)
Q Consensus 277 ~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~---~-~~dIlV~TP~rL~~ll 352 (651)
..+.....-..+|.+-|+.-|.++...+.... ++...+.|.....++.+.|. . .++++|+|- +
T Consensus 330 ~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-------~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~------V 396 (482)
T KOG0335|consen 330 PSDGEPKWEKTLVFVETKRGADELAAFLSSNG-------YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN------V 396 (482)
T ss_pred cccCCcccceEEEEeeccchhhHHHHHHhcCC-------CCceeecchhhhhHHHHHHHHhhcCCcceEEEeh------h
Confidence 01111112368888999998888887775543 66677777777666655553 2 589999994 5
Q ss_pred hCCCcccCCcceEeecc
Q psy8712 353 SGGHLSLTHCRFFVLDE 369 (651)
Q Consensus 353 ~~~~l~l~~l~~lViDE 369 (651)
...-++.++|+++|.=+
T Consensus 397 aaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 397 AARGLDIPNVKHVINYD 413 (482)
T ss_pred hhcCCCCCCCceeEEee
Confidence 56678899999998755
|
|
| >KOG1001|consensus | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.55 Score=54.73 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=86.0
Q ss_pred CCCCCCCCCeEEEecCCCCceeeeeccccccCCccc----cCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 245 PFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKL----VNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 245 ~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~----~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
++..++-.+.|..-+.|-|||+.++..+........ .......||++|+-- ..|...++.+..+ ...+.+.+
T Consensus 146 ~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~-~~qW~~elek~~~---~~~l~v~v 221 (674)
T KOG1001|consen 146 SREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSL-LTQWKTELEKVTE---EDKLSIYV 221 (674)
T ss_pred ccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHH-HHHHHHHHhccCC---ccceEEEE
Confidence 446678888999999999999988776622222111 234567788888754 4444444433332 23467766
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
.+|..... ......|||++|++.+.. ..+.--.--.+|+||||.+-...- +.-...-.+. ...
T Consensus 222 ~~gr~kd~----~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~t--q~~~a~~~L~-------a~~ 284 (674)
T KOG1001|consen 222 YHGRTKDK----SELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDT--QIFKAVCQLD-------AKY 284 (674)
T ss_pred eccccccc----chhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcch--Hhhhhheeec-------cce
Confidence 66611111 112457899999977652 111112223789999998865321 1111222221 134
Q ss_pred EEEEeeccChHHHHHHH
Q psy8712 401 MIVCSATLHDFDVKKMA 417 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~ 417 (651)
--.+|+|.....+.++.
T Consensus 285 RWcLtgtPiqn~~~~ly 301 (674)
T KOG1001|consen 285 RWCLTGTPIQNNLDELY 301 (674)
T ss_pred eeeecCChhhhhHHHHH
Confidence 45678886554444443
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.47 Score=56.92 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=88.4
Q ss_pred eEeeccchhhhhc---cchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceE
Q psy8712 364 FFVLDEADGLLKQ---GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH 440 (651)
Q Consensus 364 ~lViDEaD~ll~~---gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~ 440 (651)
..-.|.-|.++.. .|...+..+...-.. ..++++-|.++. .-++..+++.. ..|.
T Consensus 597 ~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~------GrPVLVGT~SVe---~SE~lS~~L~~-------------~gI~ 654 (1112)
T PRK12901 597 IARKDKEDLVYKTKREKYNAVIEEITELSEA------GRPVLVGTTSVE---ISELLSRMLKM-------------RKIP 654 (1112)
T ss_pred cceecCCCeEecCHHHHHHHHHHHHHHHHHC------CCCEEEEeCcHH---HHHHHHHHHHH-------------cCCc
Confidence 3445777766532 233444444444333 456777666653 33333334322 1233
Q ss_pred EEEEEeCcchHHHHHHHhhccccceeeccccccCCCCCC--------CCCEEEEeCCCCChhhhhhhcCccccCCCceEE
Q psy8712 441 HVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDIS--------GLPFIINMTLPDDKANYVHRIGRVGRAERMGLA 512 (651)
Q Consensus 441 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~td~~~rGIDip--------~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~a 512 (651)
|.+.......++...-...+..-.+..+|+.+.||-||. +==+||--..|.|..---|-.||+||-|.+|.+
T Consensus 655 H~VLNAK~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS 734 (1112)
T PRK12901 655 HNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSS 734 (1112)
T ss_pred HHHhhccchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcc
Confidence 333333322333333335666777888999999999997 223799999999999999999999999999999
Q ss_pred EEeeeCCcccc
Q psy8712 513 ISLVSTVPEKV 523 (651)
Q Consensus 513 i~lv~~~de~~ 523 (651)
-.|++-+|+..
T Consensus 735 ~f~lSLEDdLm 745 (1112)
T PRK12901 735 QFYVSLEDNLM 745 (1112)
T ss_pred eEEEEcccHHH
Confidence 99999887665
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.65 Score=54.66 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=25.8
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.+++-|.+|+.. ..+.++|.|..|||||.+-
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL 32 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI 32 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHH
Confidence 478999999875 3578999999999999663
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.62 Score=47.93 Aligned_cols=22 Identities=0% Similarity=-0.077 Sum_probs=18.5
Q ss_pred CCCCeEEEecCCCCceeeeecc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.+.|++..++.|+|||..+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHH
Confidence 4578999999999999987643
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.48 Score=47.86 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=29.5
Q ss_pred cCCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 359 LTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+.+.++|||||+|.+... .....+..+++.+... +.+++++|++.++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-----~~~illits~~~p 136 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-----GKTLLLISADCSP 136 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-----CCcEEEEeCCCCh
Confidence 356789999999988632 2233445555544321 3467788888765
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.3 Score=49.57 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=31.4
Q ss_pred ccccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeee
Q psy8712 210 HLGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 210 ~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~ 269 (651)
.+..+|..|....-+.|.+. .|..+.- .-......+..+..+..+..|+|||....
T Consensus 8 Ql~l~~~~~~~~~fd~f~~~---~n~~a~~-~l~~~~~~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 8 QLSLPLYLPDDETFASFYPG---DNDSLLA-ALQNALRQEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred ceecCCCCCCcCCccccccC---ccHHHHH-HHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 45556666666665666554 2322211 11111122334578999999999999654
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=1.8 Score=47.96 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=26.3
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccc
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTG 54 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~ 54 (651)
..|-......+..+..++++++.+++|+|||.
T Consensus 178 ~i~e~~le~l~~~L~~~~~iil~GppGtGKT~ 209 (459)
T PRK11331 178 FIPETTIETILKRLTIKKNIILQGPPGVGKTF 209 (459)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEECCCCCCHHH
Confidence 34556667778888899999999999999993
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.036 Score=60.42 Aligned_cols=209 Identities=18% Similarity=0.168 Sum_probs=115.0
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
.+++++|++||++|.+.++.++-.- ++. -
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~---------------------------h~~------------------------~ 184 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKY---------------------------HES------------------------I 184 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhh---------------------------CCC------------------------c
Confidence 4678999999999999998877421 000 0
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCccc---cccccc-CCceeeeeccCcc---------ccccccc---------c
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVI---GCLLDL-DNMTVAFTKNGQH---------LGLAFNI---------S 218 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~i---g~~~~~-~~~~~~~~~ng~~---------~g~af~~---------~ 218 (651)
-++..-|||..+........ +.+.+| |+|+|. ++-..++++|=+. +.++|+. |
T Consensus 185 ~v~~viGG~~~~~e~~kl~k-----~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp 259 (543)
T KOG0342|consen 185 TVGIVIGGNNFSVEADKLVK-----GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP 259 (543)
T ss_pred ceEEEeCCccchHHHHHhhc-----cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhcc
Confidence 01234567665544443333 567777 999995 7777788999855 6888864 4
Q ss_pred hhhhhccCcchhhccc---ccccc----cc-----CCCCCCC-CCCCCeEEEecCCCCceeeeeccccccCCccccCCCC
Q psy8712 219 QQLKNSAFYPAVVLKN---AEMSF----NF-----GATPFKH-EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAP 285 (651)
Q Consensus 219 ~~~~~~~~~p~~~~k~---~~~~~----~f-----~~~~~~~-~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p 285 (651)
...|.-.|.+++..|- +..+. -| +..+-.+ .-++.++++.. .+- +..+...+ +...+..
T Consensus 260 k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~---~~~--f~ll~~~L---Kk~~~~~ 331 (543)
T KOG0342|consen 260 KQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS---DSR--FSLLYTFL---KKNIKRY 331 (543)
T ss_pred ccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc---cch--HHHHHHHH---HHhcCCc
Confidence 4444444433333221 11000 00 0011111 12222333221 111 11111111 1122237
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh----ccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL----SSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L----~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
+++|.+||---+.-+++.++ +++ +.|..+.|+.+....-... +...-|+|||- +....+++.+
T Consensus 332 KiiVF~sT~~~vk~~~~lL~----~~d---lpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTD------VaARGlD~P~ 398 (543)
T KOG0342|consen 332 KIIVFFSTCMSVKFHAELLN----YID---LPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTD------VAARGLDIPD 398 (543)
T ss_pred eEEEEechhhHHHHHHHHHh----hcC---CchhhhhcCCcccccchHHHHHhhcccceEEecc------hhhccCCCCC
Confidence 89999999887777776665 333 8888888887643332221 23568999993 4445567777
Q ss_pred cceEe
Q psy8712 362 CRFFV 366 (651)
Q Consensus 362 l~~lV 366 (651)
|.+||
T Consensus 399 V~~Vv 403 (543)
T KOG0342|consen 399 VDWVV 403 (543)
T ss_pred ceEEE
Confidence 77776
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.058 Score=59.07 Aligned_cols=212 Identities=14% Similarity=0.207 Sum_probs=118.2
Q ss_pred CccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCC
Q psy8712 80 AKAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGT 159 (651)
Q Consensus 80 ~~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~ 159 (651)
.++++++|++||++|.++.+..+.. .+-.+-|||
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaq-------------------------------Ft~I~~~L~--------------- 286 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQ-------------------------------FTDITVGLA--------------- 286 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHh-------------------------------hccceeeee---------------
Confidence 4789999999999999998877741 011122344
Q ss_pred CCCCCCcCCCCccCCCcccCccCcccCCCccc----ccccccCCceeeeeccCc----------ccccccc---------
Q psy8712 160 DRFGFGFGGTGKKSNNKQFDNYGEAFGMHDVI----GCLLDLDNMTVAFTKNGQ----------HLGLAFN--------- 216 (651)
Q Consensus 160 ~~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~i----g~~~~~~~~~~~~~~ng~----------~~g~af~--------- 216 (651)
.||-.-|+++--.. ...||+ |+|||.-.+.-+|.-.-- -|..+|.
T Consensus 287 ------vGGL~lk~QE~~LR------s~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~l 354 (691)
T KOG0338|consen 287 ------VGGLDLKAQEAVLR------SRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRL 354 (691)
T ss_pred ------ecCccHHHHHHHHh------hCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHh
Confidence 34444444432222 234777 999998777777765432 2555663
Q ss_pred cchhhhhccCcchhhccc---cccccccCCCCCCCC-------CCCCeEEEecCCCCceeeeeccccccCCccccCCCCe
Q psy8712 217 ISQQLKNSAFYPAVVLKN---AEMSFNFGATPFKHE-------PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQ 286 (651)
Q Consensus 217 ~~~~~~~~~~~p~~~~k~---~~~~~~f~~~~~~~~-------~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~ 286 (651)
+|..-|.--|.++...+- +.++.+=.-.-|.-| ..+.||-.-..--|-..+.+.++... .-.-+
T Consensus 355 cpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~r------tf~~~ 428 (691)
T KOG0338|consen 355 CPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITR------TFQDR 428 (691)
T ss_pred ccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHH------hcccc
Confidence 366666555555544332 222222110001111 11222222222222222222222111 11346
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc----CCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS----GVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~----~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
++|.+-|+.-|..+.=.+-.++ +++.-+.|.-+..+....|.. .+|+||+|- +....++...|
T Consensus 429 ~ivFv~tKk~AHRl~IllGLlg-------l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD------vAsRGLDI~gV 495 (691)
T KOG0338|consen 429 TIVFVRTKKQAHRLRILLGLLG-------LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD------VASRGLDIEGV 495 (691)
T ss_pred eEEEEehHHHHHHHHHHHHHhh-------chhhhhcccccHHHHHHHHHHHHhccCCEEEEec------hhhccCCccce
Confidence 8888888877765544443333 899999999888887777653 799999993 55566777888
Q ss_pred ceEeec
Q psy8712 363 RFFVLD 368 (651)
Q Consensus 363 ~~lViD 368 (651)
..+|==
T Consensus 496 ~tVINy 501 (691)
T KOG0338|consen 496 QTVINY 501 (691)
T ss_pred eEEEec
Confidence 877733
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.55 Score=47.66 Aligned_cols=45 Identities=9% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 360 THCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
.++++||||++|.+... .....+-.+++.+... +.+ ++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~-----g~~-ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS-----GRR-LLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc-----CCE-EEEeCCCCH
Confidence 45678999999977532 2344566677665441 234 566666554
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.84 Score=54.82 Aligned_cols=141 Identities=12% Similarity=0.106 Sum_probs=83.9
Q ss_pred CCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH-
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV- 327 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~- 327 (651)
...-|-|...-.|-|||.-.+..++++-.... +=+|. ||+|||--+-+ ..-.++++. |++++...+|....
T Consensus 632 eknlNGILADEmGLGKTIQtISllAhLACeeg-nWGPH-LIVVpTsviLn-WEMElKRwc-----PglKILTYyGs~kEr 703 (1958)
T KOG0391|consen 632 EKNLNGILADEMGLGKTIQTISLLAHLACEEG-NWGPH-LIVVPTSVILN-WEMELKRWC-----PGLKILTYYGSHKER 703 (1958)
T ss_pred HhcccceehhhhcccchhHHHHHHHHHHhccc-CCCCc-eEEeechhhhh-hhHHHhhhC-----CcceEeeecCCHHHH
Confidence 34456677788999999987766655544322 22444 78889865432 233444443 46999999987653
Q ss_pred HHHHHHhc--cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEe
Q psy8712 328 KDQMSVLS--SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405 (651)
Q Consensus 328 ~~q~~~L~--~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~S 405 (651)
+..++.+. +..||.|++-..+..-+. .+.-++-+++||||||.+-++. ....+.+++.-. .|.++++
T Consensus 704 keKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfk-sqrWQAllnfns--------qrRLLLt 772 (1958)
T KOG0391|consen 704 KEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFK-SQRWQALLNFNS--------QRRLLLT 772 (1958)
T ss_pred HHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchh-HHHHHHHhccch--------hheeeec
Confidence 22222222 246999988665544322 2223556799999999986542 122444544322 3567777
Q ss_pred ecc
Q psy8712 406 ATL 408 (651)
Q Consensus 406 ATl 408 (651)
.|.
T Consensus 773 gTP 775 (1958)
T KOG0391|consen 773 GTP 775 (1958)
T ss_pred CCc
Confidence 773
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.27 Score=51.06 Aligned_cols=45 Identities=29% Similarity=0.503 Sum_probs=28.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 3 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
+|++||++|-+.+.++. ..+=|||.+|||||||-. +..++..+.+
T Consensus 107 ~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 107 TLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred CHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 46777776666653321 235589999999999944 3455555544
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=88.40 E-value=0.33 Score=52.71 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=19.1
Q ss_pred cCCceEeeecCCCCccceeehhhHHHHH
Q psy8712 38 GGGDVLMAAETGSGKTGAFCLPIIQIVC 65 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~af~lp~l~~~~ 65 (651)
.++-+++++||||||| .++-.+++.+.
T Consensus 148 ~~GlilI~G~TGSGKT-T~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKS-TLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHH-HHHHHHHHHHH
Confidence 4567999999999999 33344454443
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.31 Score=47.17 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=54.3
Q ss_pred EEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH-HHHh
Q psy8712 256 AVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ-MSVL 334 (651)
Q Consensus 256 ~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q-~~~L 334 (651)
..++-|-|||.+.-++++..... ....++|-+|+.+-++.+++.+..-.+.++ .+... ...... ....
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~----~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~---~~~~~----~~~~~~~~~~~ 70 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQK----GKIRILVTAPSPENVQTLFEFAEKGLKALG---YKEEK----KKRIGQIIKLR 70 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC-------------------------------
T ss_pred ccCCCCCCHHHHHHHHHHHHHHh----cCceEEEecCCHHHHHHHHHHHHhhccccc---ccccc----ccccccccccc
Confidence 45788999999988777554432 225789999999988887776654433221 11100 000000 0000
Q ss_pred ccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 335 SSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 335 ~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
.....|-.-.|..+... ....++||||||=.+ ..+.+.++++.. ..++||.|.+.
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~----------~~vv~stTi~G 125 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRF----------PRVVFSTTIHG 125 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----------SEEEEEEEBSS
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhC----------CEEEEEeeccc
Confidence 11344555555443211 123589999998654 345566665443 34678888754
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=87.94 E-value=0.37 Score=47.77 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=32.1
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.--|+-|..++.+++...=|++.+|.|||||+.-+.-.++.+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 34588999999999977888999999999997777667666544
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=2.5 Score=49.75 Aligned_cols=39 Identities=28% Similarity=0.321 Sum_probs=28.9
Q ss_pred HHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 16 AVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 16 ~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.++...-..+|+-|++|+-. ..+.++|.|..|||||.+-
T Consensus 188 ~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl 226 (684)
T PRK11054 188 FFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVL 226 (684)
T ss_pred HHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHH
Confidence 33444445789999999853 4467899999999999543
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=87.71 E-value=1 Score=53.53 Aligned_cols=32 Identities=38% Similarity=0.411 Sum_probs=26.5
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
..++|-|.+|+.. ..+.++|.|..|||||-+-
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L 34 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVL 34 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHH
Confidence 3589999999865 3578999999999999663
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=87.65 E-value=0.63 Score=46.21 Aligned_cols=40 Identities=18% Similarity=0.023 Sum_probs=23.2
Q ss_pred CeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHH
Q psy8712 253 DYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTre 295 (651)
-.++.+.+|+|||..++.++..... ....-+.+|.-|+.+
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~---~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVK---EGEYDKIIITRPPVE 60 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHH---TTS-SEEEEEE-S--
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH---hCCCcEEEEEecCCC
Confidence 4788999999999998877633221 133446777777765
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.30 E-value=0.49 Score=52.90 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHHHhhHHhHh--cCCceEeeecCCCCccce
Q psy8712 27 DVQAEAIPLIL--GGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 27 ~iQ~~aip~il--~g~dvl~~a~TGsGKT~a 55 (651)
+-|.+.+..++ .++-+++++|||||||-.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 33444444333 567899999999999954
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=86.42 E-value=1.3 Score=52.60 Aligned_cols=31 Identities=39% Similarity=0.448 Sum_probs=26.2
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.++|-|.+|+... .+.++|.|..|||||.+-
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl 39 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVL 39 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHH
Confidence 5899999998753 578999999999999654
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=2.9 Score=53.16 Aligned_cols=31 Identities=29% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCcHHHHhhHHhHhcC--CceEeeecCCCCccc
Q psy8712 24 LPTDVQAEAIPLILGG--GDVLMAAETGSGKTG 54 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~ 54 (651)
.+|+-|.+|+..+|.. +=+++.+..|+|||.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT 867 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTT 867 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHH
Confidence 6899999999999966 668999999999993
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=86.21 E-value=0.77 Score=48.84 Aligned_cols=44 Identities=34% Similarity=0.351 Sum_probs=31.2
Q ss_pred HHHHcCCCCCcHHHHhhHHh-HhcCCceEeeecCCCCccceeehhhHH
Q psy8712 16 AVEEMDWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 16 ~l~~~~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.|.+.|+ .++.|.+.+.. +..++.++++++|||||| .++-.++.
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~ 170 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIIN 170 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHH
Confidence 3444465 45677777765 467889999999999999 55444444
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.3 Score=52.94 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCCCcHHHHhhHHhHhcC------CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCcccc
Q psy8712 11 PEIGKAVEEMDWLLPTDVQAEAIPLILGG------GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQV 84 (651)
Q Consensus 11 ~~l~~~l~~~~~~~pt~iQ~~aip~il~g------~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (651)
++..+..+.++| .||++|.+|||.++.+ .|++++|+||||||.+|+++++..+.. +.++++
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~------------g~qvlv 654 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN------------HKQVAV 654 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc------------CCeEEE
Confidence 345566678899 6999999999999987 899999999999999999888765432 457999
Q ss_pred ccCceeeeccccccccc
Q psy8712 85 ISPTWILSVWDRDTAMA 101 (651)
Q Consensus 85 ~~p~~~l~~~~~~~~~~ 101 (651)
++|+.+|+.|.......
T Consensus 655 LvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 655 LVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred EeCcHHHHHHHHHHHHH
Confidence 99999999988776543
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=85.95 E-value=1.5 Score=43.92 Aligned_cols=20 Identities=5% Similarity=-0.084 Sum_probs=16.2
Q ss_pred CCCCeEEEecCCCCceeeee
Q psy8712 250 PPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~ 269 (651)
....++..+..|+|||..+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45678999999999998643
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.2 Score=44.60 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=30.3
Q ss_pred cCCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 359 LTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
+...++|+||++|.+... .....+-.+++.+... +.|+|+.|...|.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~-----~k~li~ts~~~P~ 142 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES-----GKQLILTSDRPPS 142 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT-----TSEEEEEESS-TT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh-----CCeEEEEeCCCCc
Confidence 568899999999998653 2234455555555431 4577777766654
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=85.71 E-value=1.2 Score=48.52 Aligned_cols=25 Identities=4% Similarity=-0.040 Sum_probs=19.8
Q ss_pred CCCCCCeEEEecCCCCceeeeeccc
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
...+.+.+..+..|+|||.+.-..+
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999865544
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=0.27 Score=48.17 Aligned_cols=34 Identities=3% Similarity=-0.011 Sum_probs=20.7
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeC
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEP 292 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~P 292 (651)
.+..+..|+|||+.+...+... ...+.+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~-----~~~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY-----EERGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH-----HHcCCeEEEEec
Confidence 3556777999998776554211 112446777766
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=85.60 E-value=4.3 Score=48.50 Aligned_cols=23 Identities=4% Similarity=-0.145 Sum_probs=16.8
Q ss_pred CCCCCe-EEEecCCCCceeeeecc
Q psy8712 249 EPPKDY-IAVCNAPKQNVKHSESA 271 (651)
Q Consensus 249 ~~~~~~-i~~~~~gsGKT~~~~~a 271 (651)
..+.+. .+.+..|+|||.+.-..
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHHHH
Confidence 444455 48999999999985543
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=85.47 E-value=2.3 Score=38.15 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=17.0
Q ss_pred CCCCeEEEecCCCCceeeeecc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.....+..+..|+|||..+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4567899999999999865443
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=85.44 E-value=2.8 Score=43.50 Aligned_cols=22 Identities=0% Similarity=-0.074 Sum_probs=18.3
Q ss_pred CCCCeEEEecCCCCceeeeecc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a 271 (651)
...|++..+++|+|||..+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHH
Confidence 4578999999999999986643
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=85.42 E-value=1.6 Score=45.74 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=33.6
Q ss_pred CCCCCCeEEEecCCCCceeeeecccc-ccCCccc-cCCCCeEEEEeCCHHHHHHHHHHH
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESADV-SAGPVKL-VNNAPQAIIIEPSRELAEQTFNQI 304 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~~-~~~~~~~-~~~~p~aLIL~PTreLa~Qi~~~~ 304 (651)
...++|.+.+++++.|||.+.-.... .-..... ...-|-+.|-+|...=..-.+..+
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 34667899999999999997644331 1111111 122366677777765555555544
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.40 E-value=4.8 Score=43.13 Aligned_cols=48 Identities=23% Similarity=0.146 Sum_probs=36.8
Q ss_pred HcCCCCCcHHHHhhHHhHhcC--CceEeeecCCCCccceeehhhHHHHHH
Q psy8712 19 EMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 19 ~~~~~~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
..|+.--..-|.-|+.++|.- .=|-+.+.-|||||+-.+...|..+.+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e 272 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE 272 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH
Confidence 367777777888888888865 347788999999997766666666666
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=85.31 E-value=0.56 Score=50.75 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=15.4
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.++-|++++|||||||-
T Consensus 133 ~~glilI~GpTGSGKTT 149 (358)
T TIGR02524 133 QEGIVFITGATGSGKST 149 (358)
T ss_pred cCCEEEEECCCCCCHHH
Confidence 57889999999999994
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=85.27 E-value=0.5 Score=39.04 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=16.7
Q ss_pred hhHHhHhcCCceE-eeecCCCCccce
Q psy8712 31 EAIPLILGGGDVL-MAAETGSGKTGA 55 (651)
Q Consensus 31 ~aip~il~g~dvl-~~a~TGsGKT~a 55 (651)
+||...+.+..++ +.||.|||||..
T Consensus 1 ~av~~al~~~~~~vv~g~pGtGKT~~ 26 (76)
T PF13245_consen 1 EAVRRALAGSPLFVVQGPPGTGKTTT 26 (76)
T ss_pred CHHHHHHhhCCeEEEECCCCCCHHHH
Confidence 3555344455555 599999999944
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=85.23 E-value=2.6 Score=51.28 Aligned_cols=82 Identities=23% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHH-cCCCCCcHHHHhhHHhHhcC------CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 8 GVLPEIGKAVEE-MDWLLPTDVQAEAIPLILGG------GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 8 ~l~~~l~~~l~~-~~~~~pt~iQ~~aip~il~g------~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
..+.++.+.+.+ ++| .|||+|.+||+.|+.+ .|++++|+||||||.+|++|+++.+.. +.
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------------g~ 501 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------------GK 501 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------------CC
Confidence 345566666655 688 5999999999999985 799999999999999999999987654 45
Q ss_pred ccccccCceeeecccccccccc
Q psy8712 81 KAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
++++++|+.+|+.|........
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHH
Confidence 7999999999999988776554
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=84.81 E-value=1.6 Score=44.10 Aligned_cols=18 Identities=6% Similarity=-0.222 Sum_probs=15.0
Q ss_pred CeEEEecCCCCceeeeec
Q psy8712 253 DYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~ 270 (651)
-++..+.+|+|||..+..
T Consensus 43 ~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALA 60 (233)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 388999999999987553
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.69 E-value=1.7 Score=52.39 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=74.3
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCee-EEEEeCCccH-
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIR-ELLIIGGVNV- 327 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~-v~~l~Gg~~~- 327 (651)
...+.+.....|.|||.-++..+....... ....+.++|++|+- ++.+..+.+.++... ++ +....|....
T Consensus 357 ~~~~~ilaD~mglGKTiq~i~~l~~~~~~~-~~~~~~~liv~p~s-~~~nw~~e~~k~~~~-----~~~~~~~~g~~~~~ 429 (866)
T COG0553 357 NLLGGILADDMGLGKTVQTIALLLSLLESI-KVYLGPALIVVPAS-LLSNWKREFEKFAPD-----LRLVLVYHGEKSEL 429 (866)
T ss_pred ccCCCcccccccchhHHHHHHHHHhhhhcc-cCCCCCeEEEecHH-HHHHHHHHHhhhCcc-----ccceeeeeCCcccc
Confidence 456677779999999988877764311111 11156789999985 455566666666543 44 5566665541
Q ss_pred ---HHHHHHh-ccC----CcEEEECchhhHHHH-hCCCcccCCcceEeeccchhhhh
Q psy8712 328 ---KDQMSVL-SSG----VDIVVGTPGRMEDLI-SGGHLSLTHCRFFVLDEADGLLK 375 (651)
Q Consensus 328 ---~~q~~~L-~~~----~dIlV~TP~rL~~ll-~~~~l~l~~l~~lViDEaD~ll~ 375 (651)
......+ ... .+++++|-+.+.... ....+.-.....+|+||||.+-+
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 430 DKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred cHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 2233222 222 799999988776532 12233445667999999999654
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=84.68 E-value=1.9 Score=41.01 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
...+++||||||.|-.. -...+.+++..-|. +..++++|....
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~------~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPE------NTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTT------TEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCC------CEEEEEEECChH
Confidence 56889999999998754 34456777777665 677777776654
|
... |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=84.62 E-value=1.4 Score=49.74 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=41.1
Q ss_pred CeEEEecCCCCceeeeeccc-cccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccC
Q psy8712 253 DYIAVCNAPKQNVKHSESAD-VSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFI 311 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~a~-~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~ 311 (651)
.......-+.|||......+ ..+ .. ....++++++.+++++-|..+++.+..+....
T Consensus 24 ~~~l~v~RkNGKS~l~a~i~ly~l-~~-~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~ 81 (477)
T PF03354_consen 24 EVYLEVPRKNGKSTLAAAIALYML-FL-DGEPGAEIYCAANTRDQAKIVFDEAKKMIEAS 81 (477)
T ss_pred EEEEEEcCccCccHHHHHHHHHHH-hc-CCccCceEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 45566778899999865433 222 11 13456899999999999999999999887653
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=84.53 E-value=2.9 Score=46.66 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=30.0
Q ss_pred CcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 361 HCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
+.++|+|||+|.+.+.. ....+..+++.+... +.|+++.|- .++..+..+..++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-----~k~iIitsd-~~p~~l~~l~~rL 248 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-----GKQIVICSD-REPQKLSEFQDRL 248 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-----CCeEEEECC-CCHHHHHHHHHHH
Confidence 57799999999886532 223444455444331 345555444 4443565554444
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=84.50 E-value=0.75 Score=47.94 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=35.8
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHH
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAER 419 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~ 419 (651)
.+..+.+|+||||.|-.. -...+++.+...+. ...+++..--++. -+..+..+
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~------~trFiLIcnylsr-ii~pi~SR 179 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSR------TTRFILICNYLSR-IIRPLVSR 179 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhcccc------ceEEEEEcCChhh-CChHHHhh
Confidence 456799999999999763 33457777777665 5788887776653 33444443
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=84.41 E-value=2.3 Score=48.73 Aligned_cols=138 Identities=11% Similarity=0.129 Sum_probs=83.4
Q ss_pred CCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH
Q psy8712 251 PKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ 330 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q 330 (651)
.-|-|.....|-|||+-++..++.+-..... -+|. ||++|.-. ..++.+.++++++ .+++.-..|+......
T Consensus 586 GiNGILADeMGLGKTVQsisvlAhLaE~~nI-wGPF-LVVtpaSt----L~NWaqEisrFlP--~~k~lpywGs~~eRki 657 (1185)
T KOG0388|consen 586 GINGILADEMGLGKTVQSISVLAHLAETHNI-WGPF-LVVTPAST----LHNWAQEISRFLP--SFKVLPYWGSPSERKI 657 (1185)
T ss_pred cccceehhhhccchhHHHHHHHHHHHHhccC-CCce-EEeehHHH----HhHHHHHHHHhCc--cceeecCcCChhhhHH
Confidence 3456777788999999887766555443222 2444 67777544 4566677777765 6888888887665444
Q ss_pred HHHh---------ccCCcEEEECchhhHH---HHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 331 MSVL---------SSGVDIVVGTPGRMED---LISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 331 ~~~L---------~~~~dIlV~TP~rL~~---ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
.+.. ..+.||+|+|-+.+.. ++++ -+-.+.|+|||..+-.. ...-.+.++..- -
T Consensus 658 LrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKSS-sS~RWKtLLsF~--------c 723 (1185)
T KOG0388|consen 658 LRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKSS-SSSRWKTLLSFK--------C 723 (1185)
T ss_pred HHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhhh-hhhHHHHHhhhh--------c
Confidence 4331 2368999999765532 2221 12358999999987542 222234444321 1
Q ss_pred eeEEEEeeccCh
Q psy8712 399 LQMIVCSATLHD 410 (651)
Q Consensus 399 ~Q~l~~SATl~~ 410 (651)
+-.++++.|.-.
T Consensus 724 RNRLLLTGTPIQ 735 (1185)
T KOG0388|consen 724 RNRLLLTGTPIQ 735 (1185)
T ss_pred cceeeecCCccc
Confidence 245677888543
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=84.16 E-value=1 Score=47.49 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=24.3
Q ss_pred HHHcCCCCCcHHHHhhHHh-HhcCCceEeeecCCCCcc
Q psy8712 17 VEEMDWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT 53 (651)
|.+.|. .++-|.+.+-. +..++.++++++||||||
T Consensus 111 l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT 146 (299)
T TIGR02782 111 YVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKT 146 (299)
T ss_pred HHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH
Confidence 334454 34455555544 456789999999999999
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=83.86 E-value=1.9 Score=42.97 Aligned_cols=21 Identities=0% Similarity=-0.184 Sum_probs=17.1
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
..+...+..+..|+|||..+.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 346688999999999999644
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=83.77 E-value=5.2 Score=51.62 Aligned_cols=31 Identities=29% Similarity=0.209 Sum_probs=27.6
Q ss_pred CCcHHHHhhHHhHhcC--CceEeeecCCCCccc
Q psy8712 24 LPTDVQAEAIPLILGG--GDVLMAAETGSGKTG 54 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~ 54 (651)
.+++.|.+|+..++.+ +=+++.+..|+|||.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT 999 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTT 999 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHH
Confidence 5899999999999986 458899999999993
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=83.48 E-value=4.9 Score=45.88 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=43.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.++++++|+++-|..+++.++.+...++.. ++... .. .......+.++..|.+.|.. .+...-.+..+
T Consensus 105 ~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l-~~~~i-~~---~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~ 172 (534)
T PHA02533 105 KNVGILAHKASMAAEVLDRTKQAIELLPDF-LQPGI-VE---WNKGSIELENGSKIGAYASS-------PDAVRGNSFAM 172 (534)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHHhCHHH-hhcce-ee---cCccEEEeCCCCEEEEEeCC-------CCccCCCCCce
Confidence 378999999999999988888765543210 01000 00 00111123456666554421 12223345678
Q ss_pred Eeeccchhhh
Q psy8712 365 FVLDEADGLL 374 (651)
Q Consensus 365 lViDEaD~ll 374 (651)
+|+||+|.+-
T Consensus 173 liiDE~a~~~ 182 (534)
T PHA02533 173 IYIDECAFIP 182 (534)
T ss_pred EEEeccccCC
Confidence 9999999654
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=83.45 E-value=5.3 Score=52.60 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=26.1
Q ss_pred CCcHHHHhhHHhHhcC--CceEeeecCCCCcc
Q psy8712 24 LPTDVQAEAIPLILGG--GDVLMAAETGSGKT 53 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT 53 (651)
.+++-|.+|+-.++.. +=+++.++.|+|||
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKT 460 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGST 460 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHH
Confidence 4789999999999876 45788899999999
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=83.44 E-value=0.59 Score=51.04 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.8
Q ss_pred ceEeeecCCCCccceeehhhHH
Q psy8712 41 DVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 41 dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.+++.|+||||||.+|++|-+-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll 22 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL 22 (384)
T ss_pred CeeEecCCCCCCccEEEccchh
Confidence 4789999999999999999775
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=83.43 E-value=1.3 Score=47.22 Aligned_cols=35 Identities=31% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHcCCCCCcHHHHhhHHh-HhcCCceEeeecCCCCcc
Q psy8712 17 VEEMDWLLPTDVQAEAIPL-ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~-il~g~dvl~~a~TGsGKT 53 (651)
+.+.|. .++.|.+.+-. +..+++++++++||||||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKT 158 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKT 158 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH
Confidence 334444 45667766554 456789999999999999
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.21 E-value=0.5 Score=49.41 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=13.6
Q ss_pred CceEeeecCCCCccc
Q psy8712 40 GDVLMAAETGSGKTG 54 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~ 54 (651)
.++|+.+|||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred ccEEEECCCCCcHHH
Confidence 489999999999994
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=1.4 Score=47.13 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=16.4
Q ss_pred HhcCCceEeeecCCCCcc
Q psy8712 36 ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 36 il~g~dvl~~a~TGsGKT 53 (651)
+..+++++++++||||||
T Consensus 157 v~~~~nili~G~tgSGKT 174 (332)
T PRK13900 157 VISKKNIIISGGTSTGKT 174 (332)
T ss_pred HHcCCcEEEECCCCCCHH
Confidence 457899999999999999
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=83.07 E-value=4.1 Score=47.05 Aligned_cols=74 Identities=15% Similarity=0.291 Sum_probs=56.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.++|++.|.++++.+...+ +++..++|+.+..+....+. ...+|||+|. . -...++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g-------~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v-~arGID 322 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHG-------YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----V-AARGLH 322 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcC-------CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----h-hhcCCC
Confidence 45689999999999999999887653 78889999988766554442 3589999993 3 345567
Q ss_pred cCCcceEeecc
Q psy8712 359 LTHCRFFVLDE 369 (651)
Q Consensus 359 l~~l~~lViDE 369 (651)
+.+++++|.-+
T Consensus 323 ip~V~~VInyd 333 (572)
T PRK04537 323 IDGVKYVYNYD 333 (572)
T ss_pred ccCCCEEEEcC
Confidence 88999888654
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=82.96 E-value=1 Score=40.00 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=17.5
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
+..++..+..|+|||+.+...+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~ 23 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA 23 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3567889999999999876544
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=82.92 E-value=0.91 Score=52.24 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=24.8
Q ss_pred HHHcCCCCCcHHHHhhHHhHh--cCCceEeeecCCCCccce
Q psy8712 17 VEEMDWLLPTDVQAEAIPLIL--GGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~il--~g~dvl~~a~TGsGKT~a 55 (651)
|+++|+ .+-|.+.+..++ ..+-+++++|||||||-.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 556665 344555555544 357799999999999954
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=82.92 E-value=3.2 Score=45.63 Aligned_cols=18 Identities=0% Similarity=-0.162 Sum_probs=14.9
Q ss_pred CeEEEecCCCCceeeeec
Q psy8712 253 DYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 253 ~~i~~~~~gsGKT~~~~~ 270 (651)
.++..+.+|+|||..+..
T Consensus 138 ~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 478899999999997643
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=82.77 E-value=12 Score=43.99 Aligned_cols=79 Identities=14% Similarity=0.324 Sum_probs=58.8
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCc
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l 357 (651)
.++.++||.++|+..|..+.+.+...+ +++..+.|+.+..+....+ + ...+|+|+| +.+ ...+
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~g-------i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L-~rGf 506 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELG-------IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLL-REGL 506 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhc-------cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chh-cCCe
Confidence 456789999999999999999888764 7777787876654443333 2 358999999 333 3556
Q ss_pred ccCCcceEeeccchhh
Q psy8712 358 SLTHCRFFVLDEADGL 373 (651)
Q Consensus 358 ~l~~l~~lViDEaD~l 373 (651)
++.+++++|+-|+|..
T Consensus 507 DiP~v~lVvi~Dadif 522 (655)
T TIGR00631 507 DLPEVSLVAILDADKE 522 (655)
T ss_pred eeCCCcEEEEeCcccc
Confidence 7899999998888864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=82.76 E-value=3.7 Score=42.20 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=17.5
Q ss_pred CCCCCeEEEecCCCCceeeeec
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
+...+.+..++.|+|||.++-.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHH
Confidence 3446789999999999997543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.2 Score=46.16 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=25.0
Q ss_pred HHHHcCCCCCcHHHHhhHHhHh--cCCceEeeecCCCCcc
Q psy8712 16 AVEEMDWLLPTDVQAEAIPLIL--GGGDVLMAAETGSGKT 53 (651)
Q Consensus 16 ~l~~~~~~~pt~iQ~~aip~il--~g~dvl~~a~TGsGKT 53 (651)
.|+++|+ ++-|.+.+-.++ .++-++++++||||||
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKT 94 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKT 94 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHH
Confidence 4666765 455666665544 3467999999999999
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=82.54 E-value=0.74 Score=51.63 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=19.8
Q ss_pred ceEeeecCCCCccceeehhhH
Q psy8712 41 DVLMAAETGSGKTGAFCLPII 61 (651)
Q Consensus 41 dvl~~a~TGsGKT~af~lp~l 61 (651)
++++.||||||||..|++|.|
T Consensus 46 h~lvig~tgSGKt~~~viP~l 66 (469)
T PF02534_consen 46 HVLVIGPTGSGKTTSFVIPNL 66 (469)
T ss_pred EEEEEeCCCCCccceeeHhHH
Confidence 599999999999999999976
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=82.30 E-value=0.86 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=17.6
Q ss_pred cCCceEeeecCCCCccceeehhhHH
Q psy8712 38 GGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.++.++++++||||||- |+-.++.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~ 279 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAE 279 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHH
Confidence 46779999999999993 3333443
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=82.02 E-value=3.8 Score=51.23 Aligned_cols=71 Identities=24% Similarity=0.212 Sum_probs=60.2
Q ss_pred cCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 20 MDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 20 ~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
.|+ .||++|.++||.++.|+|++++|||||||| +|++|++..+.. .+.++++++|+++|+.|..+..
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT-~f~l~~~~~l~~-----------~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKT-TFGLVMSLYLAK-----------KGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHH-HHHHHHHHHHHh-----------cCCeEEEEeccHHHHHHHHHHH
Confidence 577 899999999999999999999999999999 477776654422 1457999999999999999887
Q ss_pred cccC
Q psy8712 100 MAIT 103 (651)
Q Consensus 100 ~~~~ 103 (651)
..+.
T Consensus 144 ~~l~ 147 (1176)
T PRK09401 144 EKFG 147 (1176)
T ss_pred HHHh
Confidence 7664
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=81.94 E-value=3.9 Score=43.84 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=37.2
Q ss_pred CCcceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhc
Q psy8712 360 THCRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLM 421 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l 421 (651)
.+.++|+||.|.++-. ......++.+.+.+.. ..-++.++||... +....++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p------d~~iLVl~a~~g~-d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP------DLVIFVGDALAGN-DAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC------ceEEEeeccccch-hHHHHHHHHH
Confidence 3567999999988752 3455667777665543 3567888998865 5555566654
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=81.80 E-value=2.4 Score=45.70 Aligned_cols=25 Identities=4% Similarity=-0.011 Sum_probs=19.6
Q ss_pred CCCCCCeEEEecCCCCceeeeeccc
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
...+.+.++.+..|+|||.+.-...
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999998765444
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=1.3 Score=45.49 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=34.0
Q ss_pred CCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHH
Q psy8712 21 DWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIV 64 (651)
Q Consensus 21 ~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~ 64 (651)
++.--+..|...+..+..+.-|++.+|+|||||+.-+.-.++.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l 99 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEAL 99 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44456888999999999988899999999999965554444433
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=81.45 E-value=3 Score=38.48 Aligned_cols=37 Identities=3% Similarity=0.070 Sum_probs=22.3
Q ss_pred eEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHH
Q psy8712 254 YIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRE 295 (651)
Q Consensus 254 ~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTre 295 (651)
+++.+..|+|||..+...+.... ..+..++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEECCcc
Confidence 46788999999998755442221 13445666655433
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.37 E-value=5.2 Score=44.73 Aligned_cols=53 Identities=8% Similarity=0.106 Sum_probs=28.7
Q ss_pred CCcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHH
Q psy8712 360 THCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~ 418 (651)
.++++|||||+|.+.... ....+-.++..+... +.++++ +++.++..+..+-.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~-----~~~iii-ts~~~p~~l~~l~~ 263 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEA-----GKQIVL-TSDRPPKELPGLEE 263 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC-----CCcEEE-ECCCCHHHHHHHHH
Confidence 467799999999875421 223444455444321 245544 55555435544433
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=81.33 E-value=4.4 Score=51.14 Aligned_cols=36 Identities=42% Similarity=0.486 Sum_probs=28.9
Q ss_pred CcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHH
Q psy8712 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 25 pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
.|+-|.+||- ..|++++|.|.-|||||.+-+-=++.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~ 37 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIK 37 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHH
Confidence 5899999997 46889999999999999665444443
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=81.31 E-value=2.6 Score=50.15 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=26.8
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccceee
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFC 57 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~ 57 (651)
..++|-|.+|+... .+.++|.|..|||||-+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~ 35 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLT 35 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHH
Confidence 35899999999753 5789999999999996543
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.14 E-value=2.2 Score=50.19 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=45.8
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC---CceEEEEeee
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE---RMGLAISLVS 517 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g---~~G~ai~lv~ 517 (651)
..+.++...-.+..|+|+|.++-||.||.-.+..+-+|-+||+-|-. +-|+.|+=+.
T Consensus 527 neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 527 NECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred chheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 44566665666777999999999999999999999999999999943 3566666554
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=81.10 E-value=10 Score=41.58 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=66.8
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeC-C-HH-HHHHHHHHHHHhhccCCCCCeeEEEEeCCcc
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEP-S-RE-LAEQTFNQIIKFKKFITDPKIRELLIIGGVN 326 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~P-T-re-La~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~ 326 (651)
.|..+..++.+|+|||+.....+.... ..+.++.++.- + |. -+.|... ++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-----~~GkkVglI~aDt~RiaAvEQLk~----yae~l--------------- 295 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-----GKKKTVGFITTDHSRIGTVQQLQD----YVKTI--------------- 295 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-----HcCCcEEEEecCCcchHHHHHHHH----Hhhhc---------------
Confidence 356788999999999998665442221 12333443332 2 21 2222222 22111
Q ss_pred HHHHHHHhccCCcEE-EECchhhHHHHhCCCcccCCcceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEE
Q psy8712 327 VKDQMSVLSSGVDIV-VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVC 404 (651)
Q Consensus 327 ~~~q~~~L~~~~dIl-V~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~ 404 (651)
++.++ +.+|..+.+.+..-. .-.+.++|+||-+=+.... .....+..+++.... ..-++.+
T Consensus 296 ----------gipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~P------devlLVL 358 (436)
T PRK11889 296 ----------GFEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEP------DYICLTL 358 (436)
T ss_pred ----------CCcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCC------CeEEEEE
Confidence 22333 345666555443211 0124678888877654321 122334444433222 2346679
Q ss_pred eeccChHHHHHHHHHhcc
Q psy8712 405 SATLHDFDVKKMAERLMY 422 (651)
Q Consensus 405 SATl~~~~v~~l~~~~l~ 422 (651)
|||....++.+.++.|-.
T Consensus 359 sATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 359 SASMKSKDMIEIITNFKD 376 (436)
T ss_pred CCccChHHHHHHHHHhcC
Confidence 998876677788877743
|
|
| >PRK13850 type IV secretion system protein VirD4; Provisional | Back alignment and domain information |
|---|
Probab=80.61 E-value=0.96 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.1
Q ss_pred CceEeeecCCCCccceeehhhHH
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
..+++.||||||||..|++|-|-
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL 162 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLL 162 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHh
Confidence 38999999999999999999875
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=80.57 E-value=1.1 Score=48.08 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.1
Q ss_pred cCCceEeeecCCCCccc
Q psy8712 38 GGGDVLMAAETGSGKTG 54 (651)
Q Consensus 38 ~g~dvl~~a~TGsGKT~ 54 (651)
.++-+++++|||||||-
T Consensus 121 ~~g~ili~G~tGSGKTT 137 (343)
T TIGR01420 121 PRGLILVTGPTGSGKST 137 (343)
T ss_pred cCcEEEEECCCCCCHHH
Confidence 46889999999999994
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=80.44 E-value=3.1 Score=48.96 Aligned_cols=32 Identities=34% Similarity=0.344 Sum_probs=25.8
Q ss_pred CcHHHHhhHHhHhcCCceEeeecCCCCccceeeh
Q psy8712 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCL 58 (651)
Q Consensus 25 pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~l 58 (651)
++|-|.+|+.. ..+.++|.|..|||||.+-+-
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHH
Confidence 68899998865 467899999999999965433
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=80.30 E-value=6.2 Score=40.89 Aligned_cols=21 Identities=0% Similarity=-0.143 Sum_probs=16.8
Q ss_pred CCeEEEecCCCCceeeeeccc
Q psy8712 252 KDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..++..+..|+|||..+...+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia 135 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIA 135 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999866433
|
|
| >PRK13897 type IV secretion system component VirD4; Provisional | Back alignment and domain information |
|---|
Probab=80.07 E-value=1.1 Score=51.92 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.7
Q ss_pred CceEeeecCCCCccceeehhhHHH
Q psy8712 40 GDVLMAAETGSGKTGAFCLPIIQI 63 (651)
Q Consensus 40 ~dvl~~a~TGsGKT~af~lp~l~~ 63 (651)
..+++.||||||||..|++|-|..
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~ 182 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLF 182 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHh
Confidence 479999999999999999998863
|
|
Homologous Structure Templates
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 4e-52
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 23/207 (11%)
Query: 83 QVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTD-- 140
+ +L++ DR + I+ + L +K + RA+ GV +G +Y+E TV +
Sbjct: 7 ACLYERVLLALHDRAPQLKISDDRLTVVG--EKGYSMVRASHGVR-KGAWYFEITVDEMP 63
Query: 141 -EGLCRVGWSTSQAVRD--LGTDRFGFGF-GGTGKKSNNKQFDNYGEAFGMHDVIGCLLD 196
+ R+GWS LG D+F + + G K + +Y +G DV+G ++
Sbjct: 64 PDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYIN 123
Query: 197 LDNMTVA--------FTKNGQHLGLAFNISQQLKNSAFYPAVVL-KNAEMSFNFGATPFK 247
L T++ F KNG + G+A+ + + ++PA+ L K+ +S NFG FK
Sbjct: 124 LPEDTISGRGSSEIIFYKNGVNQGVAY---KDIFEGVYFPAISLYKSCTVSINFGP-CFK 179
Query: 248 HEPP-KDYIAVCNAPKQNVKHSESADV 273
+ P Y + + V ADV
Sbjct: 180 YPPKDLTYRPMSDMGWGAVVEHTLADV 206
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 4e-49
Identities = 76/292 (26%), Positives = 123/292 (42%), Gaps = 63/292 (21%)
Query: 278 VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG 337
VK N QA+I+ P+RELA QT + K I ++ GG N++D + L+
Sbjct: 83 VKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC---GISCMVTTGGTNLRDDILRLNET 139
Query: 338 VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGK 397
V I+VGTPGR+ DL S L+ C F++DEAD +L + + +I+++ +P
Sbjct: 140 VHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------P 193
Query: 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP---------------ETVHHV 442
Q ++ SAT VK+ + ++ P ++L E + ++ +
Sbjct: 194 THQSLLFSATFPL-TVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTL 252
Query: 443 VVKIDPQQ-----------DETWGRLRSH-IQTDGVHA------RDN------------- 471
K+ Q + ++ HA R+
Sbjct: 253 FSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTL 312
Query: 472 ------ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
R GIDI + +IN P Y+HRIGR GR +GLAI+L++
Sbjct: 313 VCSDLLTR-GIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 363
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 3e-18
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
FE+ + E+ + E + P+ +Q EAIP+ + G D+L A+ G+GKT AF +P ++
Sbjct: 23 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 82
Query: 64 VCETLKEIQAGKGQGKAKAQVISPT 88
V L +IQ A ++ PT
Sbjct: 83 VKPKLNKIQ---------ALIMVPT 98
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 4e-48
Identities = 73/290 (25%), Positives = 124/290 (42%), Gaps = 65/290 (22%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
QA+I+ P+RELA Q ++ ++ ++ IGG NV + + L G +V
Sbjct: 103 VRETQALILAPTRELAVQIQKGLLALGDYM---NVQCHACIGGTNVGEDIRKLDYGQHVV 159
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
GTPGR+ D+I L + VLDEAD +L +G+ I +++ +P Q+
Sbjct: 160 AGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP------PATQV 213
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV--HHVVVKIDPQQDETWGRLRS 459
++ SATL ++ +M + M P + +K ++ E + V V+ + + +T L
Sbjct: 214 VLISATLPH-EILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 272
Query: 460 HIQTD---------------------------GVHA------RDN--------------- 471
+ +H R++
Sbjct: 273 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 332
Query: 472 ----ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
AR G+D+ + IIN LP+++ Y+HRIGR GR R G+AI+ V
Sbjct: 333 TDVWAR-GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 3e-18
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
F+ MG+ ++ + + + P+ +Q AI I+ G DV+ +++G+GKT F + +
Sbjct: 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPT 88
+Q + ++E Q A +++PT
Sbjct: 96 LQCLDIQVRETQ---------ALILAPT 114
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 2e-46
Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 66/291 (22%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL-SSGVDI 340
A QA+++ P+RELA+Q ++ ++ IGG NV+ ++ L I
Sbjct: 106 LKATQALVLAPTRELAQQIQKVVMALGDYM---GASCHACIGGTNVRAEVQKLQMEAPHI 162
Query: 341 VVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400
+VGTPGR+ D+++ +LS + + FVLDEAD +L +G+ + I + +++ Q
Sbjct: 163 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------SNTQ 216
Query: 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV--HHVVVKIDPQQDETWGRLR 458
+++ SAT+ DV ++ ++ M P + +K E+ E + ++ V+ + + +T L
Sbjct: 217 VVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 275
Query: 459 SHIQTD---------------------------GVHA------RDN-------------- 471
+ +H RD
Sbjct: 276 ETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 335
Query: 472 -----ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
AR GID+ + +IN LP ++ NY+HRIGR GR R G+AI++V+
Sbjct: 336 TTDLLAR-GIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 385
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 4e-18
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ +F++M + + + + + P+ +Q AI + G DV+ A++G+GKT F + I
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPT 88
+Q + LK Q A V++PT
Sbjct: 99 LQQIELDLKATQ---------ALVLAPT 117
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 2e-46
Identities = 75/290 (25%), Positives = 121/290 (41%), Gaps = 66/290 (22%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
APQA+++ P+RELA Q ++ + I+ IGG + + L IV
Sbjct: 87 VKAPQALMLAPTRELALQIQKVVMALAFHM---DIKVHACIGGTSFVEDAEGLR-DAQIV 142
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
VGTPGR+ D I + F+LDEAD +L G+ I ++ +P Q+
Sbjct: 143 VGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------PTTQV 196
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD--ETWGRLRS 459
++ SAT+ + DV ++ + M P + +K ++ E + V ++ ++ E L
Sbjct: 197 VLLSATMPN-DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYD 255
Query: 460 HIQTD---------------------------GVHA------RDN--------------- 471
I +++ RD
Sbjct: 256 SISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 315
Query: 472 ----ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
AR GID+ + +IN LP +K NY+HRIGR GR R G+AI+ V+
Sbjct: 316 TDLLAR-GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 364
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 3e-18
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F++M + + + V + P+ +Q AI I+ G DVL A++G+GKTG F + +Q
Sbjct: 23 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82
Query: 64 VCETLKEIQAGKGQGKAKAQVISPT 88
+ ++K Q A +++PT
Sbjct: 83 IDTSVKAPQ---------ALMLAPT 98
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 3e-44
Identities = 70/304 (23%), Positives = 124/304 (40%), Gaps = 72/304 (23%)
Query: 278 VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG 337
++ V +++ +RELA Q + +F K++ P ++ + GG+++K VL
Sbjct: 70 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKN 127
Query: 338 VD-IVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSD 395
IVVGTPGR+ L L+L H + F+LDE D +L+Q + + + P
Sbjct: 128 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK-- 185
Query: 396 GKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVH-----HVVVKIDPQQ 450
Q+++ SATL +++ + + M P + + E + T+H +V +K D ++
Sbjct: 186 ----QVMMFSATLSK-EIRPVCRKFMQDPMEIFVDDETKL--TLHGLQQYYVKLK-DNEK 237
Query: 451 DETWGRL-------------RSHIQTD--------------GVHA------RDN------ 471
+ L +S + +H R +
Sbjct: 238 NRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 297
Query: 472 -------------ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518
R G+DI + N +P+D Y+HR+ R GR GLAI+ VS
Sbjct: 298 DFQRRILVATNLFGR-GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 356
Query: 519 VPEK 522
+
Sbjct: 357 ENDA 360
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 6e-18
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F + + PE+ +A+ + + P++VQ E IP + G DVL A++G GKT F L +Q
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69
Query: 64 VCETLKEIQAGKGQGKAKAQVISPT 88
+ ++ V+ T
Sbjct: 70 LEPVTGQVS---------VLVMCHT 85
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-44
Identities = 59/285 (20%), Positives = 111/285 (38%), Gaps = 62/285 (21%)
Query: 280 LVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD 339
++ +++++ P+REL Q + I +++ + + GG+ K Q++ + D
Sbjct: 52 ILELGMKSLVVTPTRELTRQVASHIRDIGRYM---DTKVAEVYGGMPYKAQINRVR-NAD 107
Query: 340 IVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRL 399
IVV TPGR+ DL S G + L+ ++DEAD + + G+ + I + Q ++
Sbjct: 108 IVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN-----RK- 161
Query: 400 QMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD-------- 451
+ SAT+ + +++K+ + + ++ V H V +
Sbjct: 162 ITGLFSATIPE-EIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSKVQALRE 217
Query: 452 ETWG-------------RLRSHIQT-DGVH------ARDN-------------------A 472
+L + R+ +
Sbjct: 218 NKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVAS 277
Query: 473 RPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
R G+DI + +IN P D Y+HRIGR GR R G AI+ +
Sbjct: 278 R-GLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 74.8 bits (185), Expect = 1e-14
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 15/78 (19%)
Query: 11 PEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKE 70
+I +A+ EM + T+VQ++ IPL+L G +V++ A+TGSGKT A+ +PI++
Sbjct: 3 EKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE------LG 56
Query: 71 IQAGKGQGKAKAQVISPT 88
++ + V++PT
Sbjct: 57 MK---------SLVVTPT 65
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 7e-41
Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 78/293 (26%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
NN +AII+ P+RELA Q ++I K ++ I GG + Q+ L +IV
Sbjct: 72 NNGIEAIILTPTRELAIQVADEIESLKGN---KNLKIAKIYGGKAIYPQIKALK-NANIV 127
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
VGTPGR+ D I+ G L+L + ++F+LDEAD +L G+ ++++ K + ++
Sbjct: 128 VGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK-----DK-RI 181
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDP------------- 448
++ SAT+ ++ +A++ M +++ K + V+++
Sbjct: 182 LLFSATMPR-EILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNENERFEALCRLLKN 236
Query: 449 ---------------------------------------QQDETWGRLRSH-----IQTD 464
Q+++ + I TD
Sbjct: 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296
Query: 465 GVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
V +R GID++ L +IN LP + +Y+HRIGR GRA + G AIS+++
Sbjct: 297 -VMSR-----GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 343
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 7e-16
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLIL-GGGDVLMAAETGSGKTGAFCLPIIQ 62
F E+ + I A+ + PTD+Q + IPL L +++ A TGSGKT +F +P+I+
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 63 IVCETLKEIQAGKGQGKAKAQVISPT 88
+V I+ A +++PT
Sbjct: 68 LV-NENNGIE---------AIILTPT 83
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 4e-40
Identities = 80/297 (26%), Positives = 129/297 (43%), Gaps = 76/297 (25%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
+ +PQAI + PSRELA QT + + KF KI LI+ K++ ++
Sbjct: 73 DASPQAICLAPSRELARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVI 125
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLL-KQGYGNLIDRMHKQIPKITSDGKRLQ 400
VGTPG + DL+ + L + FVLDEAD +L +QG G+ R+ + +P K Q
Sbjct: 126 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP------KDTQ 179
Query: 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ---------- 450
+++ SAT D V++ A++++ ++L+ + + + + + +
Sbjct: 180 LVLFSATFAD-AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238
Query: 451 ------------------DETWGRLRSH-IQTDGVH------ARDN-------------- 471
+ +G+L+S + +H RD
Sbjct: 239 GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI 298
Query: 472 -----ARPGIDISGLPFIINMTLP------DDKANYVHRIGRVGRAERMGLAISLVS 517
AR GIDI + ++N LP D A Y+HRIGR GR R G+AIS V
Sbjct: 299 TTNVLAR-GIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH 354
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 7e-16
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGG--DVLMAAETGSGKTGAFCLPII 61
F+E+G+ PE+ K + M + P+ +Q A+PL+L +++ +++G+GKT AF L ++
Sbjct: 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66
Query: 62 QIVCETLKEIQAGKGQGKAKAQVISPT 88
V Q A ++P+
Sbjct: 67 TRVNPEDASPQ---------AICLAPS 84
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 5e-39
Identities = 58/306 (18%), Positives = 115/306 (37%), Gaps = 72/306 (23%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITD-PKIRELLIIGGVNVKDQMSVLS-SGVD 339
+A+I+ P+R+LA Q ++ K K + ++GG + + M+ ++ +
Sbjct: 144 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPN 203
Query: 340 IVVGTPGRMEDLISGGHLSLT-HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGK 397
IV+ TPGR+ D++ + VLDEAD LL+ G+ + ++ + + + +
Sbjct: 204 IVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSAD 263
Query: 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWV----DLKGEDAVPETVHH---VVVKIDPQQ 450
++ ++ SATL D V+K+A +M + K E E + + K
Sbjct: 264 NIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSI 322
Query: 451 DETWGRLRSH----------------------------------IQTDGVH------ARD 470
++ + H R
Sbjct: 323 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 382
Query: 471 N-------------------ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGL 511
+ AR G+D + ++ + +P + ANY+HRIGR R+ + G
Sbjct: 383 SLVKRFKKDESGILVCTDVGAR-GMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS 441
Query: 512 AISLVS 517
++ +
Sbjct: 442 SVLFIC 447
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 2e-18
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPII 61
EE + EI KA+ M++ T VQ + I IL DV+ A+TG+GKT AF +PI
Sbjct: 74 LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 133
Query: 62 QIVCETLKEIQAGKGQGKAKAQVISPT 88
Q + T + Q A +++PT
Sbjct: 134 QHLINTKFDSQYMVK-----AVIVAPT 155
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 5e-39
Identities = 58/306 (18%), Positives = 115/306 (37%), Gaps = 72/306 (23%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITD-PKIRELLIIGGVNVKDQMSVLS-SGVD 339
+A+I+ P+R+LA Q ++ K K + ++GG + + M+ ++ +
Sbjct: 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPN 152
Query: 340 IVVGTPGRMEDLISGGHLSLT-HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGK 397
IV+ TPGR+ D++ + VLDEAD LL+ G+ + ++ + + + +
Sbjct: 153 IVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSAD 212
Query: 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWV----DLKGEDAVPETVHH---VVVKIDPQQ 450
++ ++ SATL D V+K+A +M + K E E + + K
Sbjct: 213 NIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSI 271
Query: 451 DETWGRLRSH----------------------------------IQTDGVH------ARD 470
++ + H R
Sbjct: 272 FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 331
Query: 471 N-------------------ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGL 511
+ AR G+D + ++ + +P + ANY+HRIGR R+ + G
Sbjct: 332 SLVKRFKKDESGILVCTDVGAR-GMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS 390
Query: 512 AISLVS 517
++ +
Sbjct: 391 SVLFIC 396
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 2e-17
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPII 61
EE + EI KA+ M++ T VQ + I IL DV+ A+TG+GKT AF +PI
Sbjct: 23 LEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF 82
Query: 62 QIVCETLKEIQAGKGQGKAKAQVISPT 88
Q + T + Q A +++PT
Sbjct: 83 QHLINTKFDSQYMVK-----AVIVAPT 104
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 1e-36
Identities = 65/288 (22%), Positives = 115/288 (39%), Gaps = 67/288 (23%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
PQ +I+ P+RELA Q FN+ +KF + ++ ++ GG + + Q ++ G +V+ T
Sbjct: 130 PQVVIVSPTRELAIQIFNE---ARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 186
Query: 345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
PGR+ D + ++ RF VLDEAD +L G+ + M + + +T + Q ++
Sbjct: 187 PGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFS---EDMRRIMTHVTMRPEH-QTLMF 242
Query: 405 SATLHDF--DVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQ 462
SAT F ++++MA + +V + V + +++ + +L +
Sbjct: 243 SAT---FPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN--KYAKRSKLIEILS 297
Query: 463 T------------------------DGVHA-----------RDNA----RPG-------- 475
R+ A + G
Sbjct: 298 EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357
Query: 476 ------IDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
+DI + +IN +P +YVHRIGR GR G A S
Sbjct: 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFD 405
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 3e-13
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMA-AETGSGKTGAFCLPII 61
F + I V + + +PT +Q +IP+I G D LMA A+TGSGKT AF LPI+
Sbjct: 58 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRD-LMACAQTGSGKTAAFLLPIL 115
|
| >2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 9e-36
Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 19/164 (11%)
Query: 95 DRDTAMAITPEGLRCQSREQKEWHGC-RANKGVYGRGKYYYEATVTD---EGLCRVGWST 150
I +G GC A++ + + Y+E ++ D G VG
Sbjct: 4 GSSGFKHILVDGDTLSYHGNSGEVGCYVASRPLT-KDSNYFEVSIVDSGVRGTIAVGLVP 62
Query: 151 SQA--VRDLGTDRFGFGFGGTGKKSNNKQFD--NYGEAFGMHDVIGC-----LLDLDNMT 201
G + K N + +G D IGC D+
Sbjct: 63 QYYSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQ 122
Query: 202 VAFTKNGQHLGLAFNISQQLKNSAFYPAVVLK--NAEMSFNFGA 243
+ FTKNG+ +G + +PAV + E+ + A
Sbjct: 123 IFFTKNGKRVGSTI---MPMSPDGLFPAVGMHSLGEEVRLHLNA 163
|
| >3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 8e-34
Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 26/175 (14%)
Query: 89 WILSVWDRDTAMAITPEGLRCQSREQ-KEWHGCRANKGVYGRGKYYYEATVTDEGL---C 144
+ D + + GL + R + G R +G RG + +E + E
Sbjct: 44 HGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYS-RGLHAWEISWPLEQRGTHA 102
Query: 145 RVGWSTSQA-------VRDLGTDRFGFGF---------GGTGKKSNNKQFDNYGEAFGMH 188
VG +T+ A LG++ +G+ G + GE +
Sbjct: 103 VVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVP 162
Query: 189 DVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAV--VLKNAEMSFNF 241
+ + +LD++ T+ + G +LG AF + LK YPAV V ++ +
Sbjct: 163 ERLLVVLDMEEGTLGYAIGGTYLGPAF---RGLKGRTLYPAVSAVWGQCQVRIRY 214
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-33
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 9/147 (6%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
+ QA++I P+RELA Q I+ K + + + GG N++D + L V +V
Sbjct: 69 KDNIQAMVIVPTRELALQVSQICIQVSKHM--GGAKVMATTGGTNLRDDIMRLDDTVHVV 126
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
+ TPGR+ DLI G + H + VLDEAD LL Q + +++ + +PK R Q+
Sbjct: 127 IATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK-----NR-QI 180
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWVD 428
++ SAT V+K + P ++
Sbjct: 181 LLYSATFPL-SVQKFMNSHLEKPYEIN 206
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 9e-20
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
FE+ + E+ + EM W P+ +Q E+IP+ L G D+L A+ G+GK+GA+ +P+++
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 64
Query: 64 VCETLKEIQAGKGQGKAKAQVISPT 88
+ IQ A VI PT
Sbjct: 65 LDLKKDNIQ---------AMVIVPT 80
|
| >2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-32
Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 27/189 (14%)
Query: 89 WILSVWDRDTAMAITPEGLRCQSRE-QKEWHGCRANKGVYGRGKYYYEATVTDEGL---C 144
+ D + + GL + R + G R +G RG + +E + E
Sbjct: 41 HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYS-RGLHAWEISWPLEQRGTHA 99
Query: 145 RVGWSTSQAVRD-------LGTDRFGFGF---------GGTGKKSNNKQFDNYGEAFGMH 188
VG +T+ A LG++ +G+ G ++ GE +
Sbjct: 100 VVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVP 159
Query: 189 DVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAV--VLKNAEMSFNFGATPF 246
+ + +LD++ T+ ++ G +LG AF + LK YP+V V ++ +
Sbjct: 160 ERLLVVLDMEEGTLGYSIGGTYLGPAF---RGLKGRTLYPSVSAVWGQCQVRIRYMGERR 216
Query: 247 KHEPPKDYI 255
E +
Sbjct: 217 V-EETRRIH 224
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 2e-32
Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 11/152 (7%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL-SSGVDI 340
QA+++ P+RELA+Q I+ ++ IGG NV+++M L + I
Sbjct: 96 FKETQALVLAPTRELAQQIQKVILALGDYM---GATCHACIGGTNVRNEMQKLQAEAPHI 152
Query: 341 VVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400
VVGTPGR+ D+++ +LS + FVLDEAD +L +G+ + I + +++ +Q
Sbjct: 153 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN------TSIQ 206
Query: 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432
+++ SAT+ DV ++ ++ M P + +K E
Sbjct: 207 VVLLSATMPT-DVLEVTKKFMRDPIRILVKKE 237
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 4e-18
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ F++M + + + + + P+ +Q AI + G DV+ A++G+GKT F + I
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISI 88
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPT 88
+Q + KE Q A V++PT
Sbjct: 89 LQQLEIEFKETQ---------ALVLAPT 107
|
| >2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-32
Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 28/181 (15%)
Query: 85 ISPTWILSVWDRDTAMAITPEGLRCQSREQ--KEWHGCRANKGVYGRGKYYYEATVTDEG 142
+ + DR + + + R + R G RG + ++ T
Sbjct: 29 VQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYT-RGLHVWQITWAMRQ 87
Query: 143 L---CRVGWSTSQAVRD-------LGTDRFGFGF----------GGTGKKSNNKQFDNYG 182
VG +T+ A +G + +G+ G F
Sbjct: 88 RGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPD 147
Query: 183 EAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAV--VLKNAEMSFN 240
E F + D LD+D+ T++F +GQ++G+AF + LK YP V V + E+
Sbjct: 148 ETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAF---RGLKGKKLYPVVSAVWGHCEIRMR 204
Query: 241 F 241
+
Sbjct: 205 Y 205
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 6e-32
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
APQA+++ P+RELA Q ++ + I+ IGG + + L IV
Sbjct: 80 VKAPQALMLAPTRELALQIQKVVMALAFHM---DIKVHACIGGTSFVEDAEGLR-DAQIV 135
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
VGTPGR+ D I + F+LDEAD +L G+ I ++ +P Q+
Sbjct: 136 VGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------PTTQV 189
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432
++ SAT+ + DV ++ + M P + +K +
Sbjct: 190 VLLSATMPN-DVLEVTTKFMRNPVRILVKKD 219
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 1e-18
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ F++M + + + V + P+ +Q AI I+ G DVL A++G+GKTG F +
Sbjct: 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA 72
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPT 88
+Q + ++K Q A +++PT
Sbjct: 73 LQRIDTSVKAPQ---------ALMLAPT 91
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 14/153 (9%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
N PQ + + P+ ELA QT I + KF P+++ + G ++ + IV
Sbjct: 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFY--PELKLAYAVRGNKLERGQKI---SEQIV 214
Query: 342 VGTPGRMEDLIS-GGHLSLTHCRFFVLDEADGLL-KQGYGNLIDRMHKQIPKITSDGKRL 399
+GTPG + D S + + FVLDEAD ++ QG+ + R+ + +P+
Sbjct: 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC------ 268
Query: 400 QMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432
QM++ SAT D V K A++++ P + LK E
Sbjct: 269 QMLLFSATFED-SVWKFAQKVVPDPNVIKLKRE 300
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 2e-16
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGG--DVLMAAETGSGKTGAFCL 58
+ +FEE+ + P++ + V M + P+ +Q A+PL+L +++ +++G+GKT AF L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 59 PIIQIVCETLKEIQAGKGQGKAKAQVISPT 88
++ V K Q +SPT
Sbjct: 151 AMLSQVEPANKYPQ---------CLCLSPT 171
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-31
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPK-IRELLIIGGVNVKDQMSVLSSGVDI 340
QA+I P+RELA Q +++ +K KF + I +IGG + + + L+ I
Sbjct: 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHI 129
Query: 341 VVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400
V+GTPGR+ D I L + V+DEAD +L G+ +D++ ++P K LQ
Sbjct: 130 VIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP------KDLQ 183
Query: 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA 434
M+V SAT+ + +K ++ M PT+V +
Sbjct: 184 MLVFSATIPE-KLKPFLKKYMENPTFVHVLEHHH 216
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 4e-19
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
F P I +A++ + + PT++Q IP L G ++ ++TG+GKT A+ LPI
Sbjct: 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPI 62
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPT 88
++ + E+Q A + +PT
Sbjct: 63 MEKIKPERAEVQ---------AVITAPT 81
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 278 VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG 337
+ L N + Q +I+ P+RE+A Q + I + + + IGG + + L
Sbjct: 86 LVLENLSTQILILAPTREIAVQIHSVITAIGIKM--EGLECHVFIGGTPLSQDKTRLK-K 142
Query: 338 VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDG 396
I VG+PGR++ LI +L+ R F+LDEAD LL++G + I+ ++ +P
Sbjct: 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP------ 196
Query: 397 KRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430
QM+ SAT + + + M PT+V L
Sbjct: 197 ASKQMLAVSATYPE-FLANALTKYMRDPTFVRLN 229
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 3e-18
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
FE + + + + + + P+ VQ +AIPL G D+++ A++G+GKT F +
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 85
Query: 64 VCETLKEIQAGKGQGKAKAQVISPT 88
+ Q +++PT
Sbjct: 86 LVLENLSTQ---------ILILAPT 101
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-30
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
N PQ + + P+ ELA QT I + KF P+++ + G ++ IV
Sbjct: 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFY--PELKLAYAVRGNKLERG---QKISEQIV 147
Query: 342 VGTPGRMEDLIS-GGHLSLTHCRFFVLDEADGLL-KQGYGNLIDRMHKQIPKITSDGKRL 399
+GTPG + D S + + FVLDEAD ++ QG+ + R+ + +P+
Sbjct: 148 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC------ 201
Query: 400 QMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432
QM++ SAT D V K A++++ P + LK E
Sbjct: 202 QMLLFSATFED-SVWKFAQKVVPDPNVIKLKRE 233
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 5e-16
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGG--DVLMAAETGSGKTGAFCL 58
+ +FEE+ + P++ + V M + P+ +Q A+PL+L +++ +++G+GKT AF L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 59 PIIQIVCETLKEIQAGKGQGKAKAQVISPT 88
++ V K Q +SPT
Sbjct: 84 AMLSQVEPANKYPQ---------CLCLSPT 104
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKA------NYVHRIGRVGRAER 508
G+ + + T+ V AR GID+ + +IN LP DK Y+HRIGR GR +
Sbjct: 315 GKEKVLVTTN-VCAR-----GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 368
Query: 509 MGLAISLVS 517
GLA+++V
Sbjct: 369 RGLAVNMVD 377
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-30
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
N PQ + + P+ ELA QT I + KF P+++ + G ++ IV
Sbjct: 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFY--PELKLAYAVRGNKLERG---QKISEQIV 214
Query: 342 VGTPGRMEDLIS-GGHLSLTHCRFFVLDEADGLL-KQGYGNLIDRMHKQIPKITSDGKRL 399
+GTPG + D S + + FVLDEAD ++ QG+ + R+ + +P+
Sbjct: 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC------ 268
Query: 400 QMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432
QM++ SAT D V K A++++ P + LK E
Sbjct: 269 QMLLFSATFED-SVWKFAQKVVPDPNVIKLKRE 300
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGG--DVLMAAETGSGKTGAFCL 58
+ +FEE+ + P++ + V M + P+ +Q A+PL+L +++ +++G+GKT AF L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 59 PIIQIVCETLKEIQAGKGQGKAKAQVISPT 88
++ V K Q +SPT
Sbjct: 151 AMLSQVEPANKYPQ---------CLCLSPT 171
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKA------NYVHRIGRVGRAER 508
G+ + + T+ V AR GID+ + +IN LP DK Y+HRIGR GR +
Sbjct: 382 GKEKVLVTTN-VCAR-----GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 435
Query: 509 MGLAISLVS 517
GLA+++V
Sbjct: 436 RGLAVNMVD 444
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-29
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
A+++ P+RELA Q Q I ++ +I+GG++ Q L+ I++ T
Sbjct: 112 LFALVLTPTRELAFQISEQFEALGSSI---GVQSAVIVGGIDSMSQSLALAKKPHIIIAT 168
Query: 345 PGRMEDLI-SGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIV 403
PGR+ D + + +L ++ V+DEAD +L + +D++ K IP+ R + +
Sbjct: 169 PGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR-----DR-KTFL 222
Query: 404 CSATLHDFDVKKMAERLMYFP 424
SAT+ V+K+ + P
Sbjct: 223 FSATMTK-KVQKLQRAALKNP 242
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 4e-22
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 9/88 (10%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
F+++GV + +A +++ W PT +Q EAIPL L G D++ AETGSGKTGAF LPI
Sbjct: 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPI 101
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPT 88
+ + ET + + A V++PT
Sbjct: 102 LNALLETPQRLF---------ALVLTPT 120
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 2e-29
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 277 PVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS 336
P + P+A+++ P+RELA Q +++ + + + + GG Q L
Sbjct: 65 PSQERGRKPRALVLTPTRELALQVASELTAVAPHL-----KVVAVYGGTGYGKQKEALLR 119
Query: 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDG 396
G D VV TPGR D + G L L+ VLDEAD +L G+ ++ + P
Sbjct: 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPP----- 174
Query: 397 KRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427
R Q ++ SATL K++AER M P +
Sbjct: 175 SR-QTLLFSATLPS-WAKRLAERYMKNPVLI 203
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 3e-18
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F++ + PEI +A+ PT +QA A+PL L G D++ A TG+GKT AF LPI +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 64 VCETLKEIQAGKGQGKA-KAQVISPT 88
+ + +G+ +A V++PT
Sbjct: 63 -------LAPSQERGRKPRALVLTPT 81
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 3e-29
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 278 VKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSG 337
++ V +++ +RELA Q + +F K++ P ++ + GG+++K VL
Sbjct: 76 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYM--PNVKVAVFFGGLSIKKDEEVLKKN 133
Query: 338 V-DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSD 395
IVVGTPGR+ L L+L H + F+LDE D +L+Q + + + P
Sbjct: 134 CPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK-- 191
Query: 396 GKRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427
Q+++ SATL +++ + + M P +
Sbjct: 192 ----QVMMFSATLSK-EIRPVCRKFMQDPMEI 218
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 2e-18
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F + + PE+ +A+ + + P++VQ E IP + G DVL A++G GKT F L +Q
Sbjct: 16 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75
Query: 64 VCETLKEIQAGKGQGKAKAQVISPT 88
+ ++ V+ T
Sbjct: 76 LEPVTGQVS---------VLVMCHT 91
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 49/210 (23%), Positives = 95/210 (45%), Gaps = 12/210 (5%)
Query: 262 KQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321
+ A G P ++++ P+RELA Q + + KF ++R ++
Sbjct: 79 SDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVV 135
Query: 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNL 381
GG ++ Q+ L G ++V TPGR+ D++ G + L C++ VLDEAD +L G+
Sbjct: 136 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQ 195
Query: 382 IDRMHKQIPKITSDGKRLQMIVCSATLHDF--DVKKMAERLMYFPTWVDLKGEDAVPETV 439
I R+ +Q + G R ++ SAT F +++ +A + ++ + + E +
Sbjct: 196 IRRIVEQ-DTMPPKGVR-HTMMFSAT---FPKEIQMLARDFLDEYIFLAVGRVGSTSENI 250
Query: 440 HHVVVKIDPQQDETWGRLRSHIQTDGVHAR 469
VV ++ + + L + G +
Sbjct: 251 TQKVVWVE--ESDKRSFLLDLLNATGKDSL 278
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 7e-14
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMA-AETGSGKTGAFCLPII- 61
F ++ + I +E + PT VQ AIP+I D LMA A+TGSGKT AF LPI+
Sbjct: 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRD-LMACAQTGSGKTAAFLLPILS 75
Query: 62 ----QIVCETLKEIQAGKGQGKAKAQ----VISPT 88
E L+ ++ G+ K V++PT
Sbjct: 76 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPT 110
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 463 TDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
T V AR G+DIS + +IN LP D YVHRIGR GR +GLA S +
Sbjct: 333 TA-VAAR-----GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 381
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 10/139 (7%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
P+ +I+ P+RELA Q ++ +KF + +R ++ GG + Q+ + G ++V T
Sbjct: 101 PKCLILAPTRELAIQILSE---SQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVAT 157
Query: 345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
PGR+ D I +SL C++ VLDEAD +L G+ I ++ ++ + S R Q ++
Sbjct: 158 PGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES-NMPSGINR-QTLMF 215
Query: 405 SATLHDF--DVKKMAERLM 421
SAT F +++K+A +
Sbjct: 216 SAT---FPKEIQKLAADFL 231
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII-Q 62
F+E+ + P I + + PT +Q AIP IL D++ A+TGSGKT AF +PII
Sbjct: 25 FDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH 84
Query: 63 IVCETLKEIQAGKGQGKAKAQVISPT 88
+VC+ L + + K K +++PT
Sbjct: 85 LVCQDLNQQRYSKTAY-PKCLILAPT 109
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 7e-28
Identities = 44/320 (13%), Positives = 92/320 (28%), Gaps = 88/320 (27%)
Query: 280 LVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS--- 336
L ++ ++ P+ L +QT ++ K K++ + +++ S
Sbjct: 60 LARKGKKSALVFPTVTLVKQTLERLQKLADE----KVKIFGFYSSMKKEEKEKFEKSFEE 115
Query: 337 -GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDR----------- 384
I+V + + LS F +D+ D +LK ID
Sbjct: 116 DDYHILVFSTQFVSKNR--EKLSQKRFDFVFVDDVDAVLKASR--NIDTLLMMVGIPEEI 171
Query: 385 --------MHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP 436
+I + + K ++V SAT + + L + +V
Sbjct: 172 IRKAFSTIKQGKIYERPKNLKPGILVVSSATA---KPRGIRPLLFRDLLNFTVGRLVSVA 228
Query: 437 ETVHHVVVKIDPQQ-----------------------DETWGRLRSH-IQTDGVHA-RDN 471
+ HV + ++ E + L+ + +
Sbjct: 229 RNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEK 288
Query: 472 -----------------------ARPGIDI-SGLPFIINMTLP--DDKANYVHRIGRVGR 505
R G+D+ + ++I P D Y+ GR R
Sbjct: 289 NFEDFKVGKINILIGVQAYYGKLTR-GVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSR 347
Query: 506 AERMGL--AISLVSTVPEKV 523
L +S++ E++
Sbjct: 348 ILNGVLVKGVSVIFEEDEEI 367
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 4e-13
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 5 EEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIV 64
E + ++ T Q I+ G M A TG GKT + + +
Sbjct: 2 EFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL- 60
Query: 65 CETLKEIQAGKGQGKAKAQVISPT 88
+ GK K+ ++ PT
Sbjct: 61 ------ARKGK-----KSALVFPT 73
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
P +++ P+RELA+Q ++ +++ I GG Q+ L GV+I + T
Sbjct: 103 PICLVLAPTRELAQQVQQVA---AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 159
Query: 345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSD--GKRLQMI 402
PGR+ D + G +L + VLDEAD +L G+ QI KI R Q +
Sbjct: 160 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFE-------PQIRKIVDQIRPDR-QTL 211
Query: 403 VCSATLHDF--DVKKMAERLMYFP 424
+ SAT + +V+++AE +
Sbjct: 212 MWSAT---WPKEVRQLAEDFLKDY 232
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
F E + + ++ PT +QA+ P+ L G D++ A+TGSGKT ++ LP I
Sbjct: 31 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 88
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-26
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
P +++ P+RELA + K+ ++ + I GG N Q+ +S GVDI++ T
Sbjct: 95 PGMLVLTPTRELALHVEAECSKYSY----KGLKSICIYGGRNRNGQIEDISKGVDIIIAT 150
Query: 345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
PGR+ DL ++L + V+DEAD +L + I ++ + R Q ++
Sbjct: 151 PGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP-----DR-QTVMT 204
Query: 405 SATLHDFDVKKMAERLMYFP 424
SAT D V+++A + P
Sbjct: 205 SATWPD-TVRQLALSYLKDP 223
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 4e-15
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 4 FEEMGVL-PEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
F++ P++ K++ + L PT +Q++A P+IL G D+++ A+TG+GKT ++ +P
Sbjct: 21 FKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFI 80
Query: 63 IVCETLKEIQAGKGQGKAKAQVISPT 88
+ + G V++PT
Sbjct: 81 HLDSQPISREQRNG---PGMLVLTPT 103
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 5e-25
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 12/151 (7%)
Query: 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
+ +II P+RELA QTF + K K LIIGG ++K + + + ++I+V
Sbjct: 96 DGLGVLIISPTRELAYQTFEVLRKVGKNH---DFSAGLIIGGKDLKHEAERI-NNINILV 151
Query: 343 GTPGRMED-LISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
TPGR+ + T + VLDEAD +L G+ + ++ + + +PK KR Q
Sbjct: 152 CTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK-----KR-QT 205
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432
++ SAT VK +A + P +V + +
Sbjct: 206 LLFSATQTK-SVKDLARLSLKNPEYVWVHEK 235
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 3e-22
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ F + + + K ++E + L T++Q + I L L G DVL AA+TGSGKT AF +P+
Sbjct: 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 83
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPT 88
+ E L +Q G +ISPT
Sbjct: 84 L----EALYRLQWTSTDG-LGVLIISPT 106
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 1e-24
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 13/145 (8%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV-LSSGVDI 340
N +A+II P+RELA Q ++IK + R +I + S DI
Sbjct: 96 NKGFRALIISPTRELASQIHRELIKISEGT---GFRIHMIHKAAVAAKKFGPKSSKKFDI 152
Query: 341 VVGTPGRMEDLIS--GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITS--DG 396
+V TP R+ L+ + L + V+DE+D L + G D Q+ I
Sbjct: 153 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRD----QLASIFLACTS 208
Query: 397 KRLQMIVCSATLHDFDVKKMAERLM 421
+++ + SAT DV++ + +
Sbjct: 209 HKVRRAMFSATFAY-DVEQWCKLNL 232
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 3e-17
Identities = 27/89 (30%), Positives = 52/89 (58%), Gaps = 12/89 (13%)
Query: 4 FEEM----GVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 59
F+++ + + + + + + +PT +Q +AIP++L G ++L +A TGSGKT AF +P
Sbjct: 27 FQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIP 86
Query: 60 IIQIVCETLKEIQAGKGQGKAKAQVISPT 88
I+ +++ +G +A +ISPT
Sbjct: 87 ILM-------QLKQPANKG-FRALIISPT 107
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVV 342
N +I+ P+RELA QTF + + LI+GG N + L +G++I+V
Sbjct: 125 NGTGVLILSPTRELAMQTFGVLKELMTHHV---HTYGLIMGGSNRSAEAQKLGNGINIIV 181
Query: 343 GTPGRMED-LISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
TPGR+ D + + + + V+DEAD +L G+ + ++ K +P +R Q
Sbjct: 182 ATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT-----RR-QT 235
Query: 402 IVCSATLHDFDVKKMA 417
++ SAT V+ +A
Sbjct: 236 MLFSATQTR-KVEDLA 250
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-19
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 4 FEEMGVL--PEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
F + L KA++EM + T++Q ++I +L G D+L AA+TGSGKT AF +P +
Sbjct: 54 FASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAV 113
Query: 62 QIVCETLKEIQAGKGQGKAKAQVISPT 88
++ + +++ G ++SPT
Sbjct: 114 EL----IVKLRFMPRNG-TGVLILSPT 135
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 9e-16
Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
G R + TD V AR GIDI + +IN LP +K +YVHR GR GRA G AIS
Sbjct: 84 GEYRYLVATD-VAAR-----GIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAIS 137
Query: 515 LVS 517
V+
Sbjct: 138 FVT 140
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-15
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
GR+ + TD V AR GIDI + + N +P Y+HRIGR RA R G AIS
Sbjct: 79 GRVNVLVATD-VAAR-----GIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132
Query: 515 LVS 517
LV
Sbjct: 133 LVE 135
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 3e-14
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 449 QQDETWGRLRSH-----IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRV 503
+++ G R + TD V AR G+DI + +++ LPD Y HR GR
Sbjct: 69 ERERVLGAFRQGEVRVLVATD-VAAR-----GLDIPQVDLVVHYRLPDRAEAYQHRSGRT 122
Query: 504 GRAERMGLAISLVS 517
GRA R G + L
Sbjct: 123 GRAGRGGRVVLLYG 136
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-13
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
+ R + T+ + R G+DI + N +P+D Y+HR+ R GR GLAI+
Sbjct: 80 FQRRILVATN-LFGR-----GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 133
Query: 515 LVST 518
VS
Sbjct: 134 FVSD 137
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-13
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 62/143 (43%)
Query: 455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514
G R I TD + AR GID+ + +IN LP +K NY+HRIGR GR R G+AI+
Sbjct: 79 GSSRILISTD-LLAR-----GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN 132
Query: 515 LVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRML 574
V+ ++ +
Sbjct: 133 FVTN--------------------------------------------------EDVGAM 142
Query: 575 GEIEEHLNVTIQQVDDKLEIPAD 597
E+E+ + I+ E+P+D
Sbjct: 143 RELEKFYSTQIE------ELPSD 159
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 1e-13
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 449 QQDETWGRLRSH-----IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRV 503
+++ G R + TD V AR G+DI + +++ +PD Y HR GR
Sbjct: 66 ERERVMGAFRQGEVRVLVATD-VAAR-----GLDIPQVDLVVHYRMPDRAEAYQHRSGRT 119
Query: 504 GRAERMGLAISLVS 517
GRA R G + L
Sbjct: 120 GRAGRGGRVVLLYG 133
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-11
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 455 GRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKA------NYVHRIGRVGRAER 508
G+ + I T+ V AR GID+ + ++N LP + Y+HRIGR GR +
Sbjct: 83 GKEKVLITTN-VCAR-----GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK 136
Query: 509 MGLAISLVS 517
GLA +++
Sbjct: 137 KGLAFNMIE 145
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 4e-11
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 461 IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
+ T V AR G+DIS + +IN LP D YVHRIGR GR +GLA S +
Sbjct: 101 VATA-VAAR-----GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 151
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-11
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 463 TDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
TD V ++ G+D + +IN +P++ NYVHRIGR G + G+A + ++
Sbjct: 111 TD-VASK-----GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 9e-07
Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 16/191 (8%)
Query: 280 LVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVD 339
L + +++ P++ L Q F++ P + + + G + +++ +
Sbjct: 48 LTKYGGKVLMLAPTKPLVLQ---HAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-AK 103
Query: 340 IVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRL 399
++V TP +E+ + G +SL V DEA + I R +K+ K
Sbjct: 104 VIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKR------QAKNP 157
Query: 400 QMIVCSATLHD--FDVKKMAERLM----YFPTWVDLKGEDAVPETVHHVVVKIDPQQDET 453
+I +A+ + ++ L + + V V P+ +
Sbjct: 158 LVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKE 217
Query: 454 WGRLRSHIQTD 464
+L + D
Sbjct: 218 VRKLLREMLRD 228
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 7e-05
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 5/162 (3%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
+ + + + EQ Q FK I G + + DI+
Sbjct: 294 GRKAKVVFLATKVPVYEQ---QKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDII 350
Query: 342 VGTPGRME-DLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400
V TP + G SL+ + DE N++ + + K S + Q
Sbjct: 351 VVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE-QKFNSASQLPQ 409
Query: 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHV 442
++ +A++ + K + E + + + A+ ++
Sbjct: 410 ILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENI 451
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 36/279 (12%), Positives = 70/279 (25%), Gaps = 72/279 (25%)
Query: 277 PVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS 336
P + +++ PS + + I N++ + +++
Sbjct: 250 PAAYAAQGYKVLVLNPSVAATLGFGAY------------MSKAHGI-DPNIRTGVRTITT 296
Query: 337 GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEA---DGLLKQGYGNLIDRMHKQIPKIT 393
G + T G+ ++ G S + DE D G G ++D+
Sbjct: 297 GAPVTYSTYGK---FLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETA----- 348
Query: 394 SDGKRLQMIVCSATLHD---FDVKKMAERLMYFPTWVDLKGEDAVPETVHH--------V 442
+++ +AT + E + + G+ E +
Sbjct: 349 ---GARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHS 405
Query: 443 VVKIDPQQDETWGR----LRSHIQTDGVHARDNAR--------------PGIDI------ 478
K D + G + + D D
Sbjct: 406 KKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNT 465
Query: 479 ---------SGLPFIINM-TLPDDKANYVHRIGRVGRAE 507
F I T+P D + R GR GR
Sbjct: 466 CVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGR 504
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 3e-04
Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 4/142 (2%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
+ + + EQ F K+ R I G + + DI+
Sbjct: 59 GQKGKVVFFANQIPVYEQ---NKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 115
Query: 342 VGTPGRME-DLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400
+ TP + +L G SL+ + DE KQ N+I + S G Q
Sbjct: 116 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 175
Query: 401 MIVCSATLHDFDVKKMAERLMY 422
+I +A++ D K E L Y
Sbjct: 176 VIGLTASVGVGDAKTTDEALDY 197
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 3e-04
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 4/137 (2%)
Query: 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPG 346
+ + EQ Q F ++ I G + + + DI++ TP
Sbjct: 55 VVFFANQIPVYEQ---QATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQ 111
Query: 347 RME-DLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCS 405
+ +L +G SL+ + DE K N I + S Q++ +
Sbjct: 112 ILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLT 171
Query: 406 ATLHDFDVKKMAERLMY 422
A++ D K E + +
Sbjct: 172 ASVGVGDAKTAEEAMQH 188
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 50/323 (15%), Positives = 96/323 (29%), Gaps = 103/323 (31%)
Query: 193 CLLDLDNMTVAFTKNGQHLGLAFNIS-QQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPP 251
CLL L N V +N + AFN+S + L + + +++ A H
Sbjct: 246 CLLVLLN--V---QNAKAWN-AFNLSCKIL--------LTTRFKQVTDFLSAATTTHISL 291
Query: 252 KDYIAVCNAPKQNVKHSESADVSAG---------PVKLVNNAPQAI-II----------- 290
+ E + P +++ P+ + II
Sbjct: 292 DH-------HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 291 EPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRME 349
+ + + II+ + + R++ D++SV I +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--------DRLSVFPPSAHI---PTILLS 393
Query: 350 ----DLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQ----IPKITSDGKRLQM 401
D+I V+ + L K L+++ K+ IP I + K
Sbjct: 394 LIWFDVIK----------SDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLE 440
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHI 461
LH + + + Y +D +P P D+ + SHI
Sbjct: 441 N--EYALH----RSIVDH--YNIP-KTFDSDDLIP-----------PYLDQYF---YSHI 477
Query: 462 QTDGVHARDNARPGIDISGLPFI 484
G H + N ++ +
Sbjct: 478 ---GHHLK-NIEHPERMTLFRMV 496
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 651 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 100.0 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 100.0 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 100.0 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 100.0 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 100.0 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 100.0 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.98 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.97 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.97 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.97 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.97 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.97 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.97 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.96 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.96 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.96 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.96 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.95 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.95 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.95 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.94 | |
| 3toj_A | 213 | SET1/ASH2 histone methyltransferase complex subun; | 99.93 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.93 | |
| 2yyo_A | 171 | SPRY domain-containing protein 3; NPPSFA, national | 99.92 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.92 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.87 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.86 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.86 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.86 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.82 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.81 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.79 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.78 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.69 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.65 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.64 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.63 | |
| 2jk9_A | 212 | SPRY domain-containing SOCS box protein 1; transcr | 99.59 | |
| 3emw_A | 217 | SPRY domain-containing SOCS box protein 2; apoptos | 99.54 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.53 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.53 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.53 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.53 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.53 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.52 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.51 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.5 | |
| 2afj_A | 226 | Gene rich cluster, C9 gene; beta sandwich, gene re | 99.49 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.45 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.45 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.38 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 98.98 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.09 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.73 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 98.17 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.81 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 96.78 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.72 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.71 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.6 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.46 | |
| 2vok_A | 188 | 52 kDa RO protein; polymorphism, immune system, me | 94.78 | |
| 3uv9_A | 186 | TRIM5alpha, tripartite motif-containing protein 5; | 93.99 | |
| 2wl1_A | 191 | Pyrin, marenostrin; amyloidosis, polymorphism, cyt | 93.8 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 93.72 | |
| 2fbe_A | 201 | Predicted: similar to RET finger protein-like 1; d | 92.95 | |
| 3kb5_A | 193 | Tripartite motif-containing protein 72; B30.2, gus | 92.82 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 92.33 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 92.21 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 91.69 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 91.68 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 90.95 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 89.62 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 89.59 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 89.5 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 89.15 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 88.25 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 87.66 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 87.29 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 86.11 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 85.9 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 84.62 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 83.67 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 83.66 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 83.46 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 83.07 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 82.19 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 81.5 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 81.36 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 81.29 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 80.76 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 80.32 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 80.29 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 80.28 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 80.23 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=461.21 Aligned_cols=302 Identities=29% Similarity=0.470 Sum_probs=261.3
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+.+|++++|+++++++|.++||..|||+|++|||.++.|+|++++||||||||+||++|+++.+.+.. .
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~--------~--- 123 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP--------H--- 123 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC--------C---
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc--------c---
Confidence 35799999999999999999999999999999999999999999999999999999999999887610 0
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 124 -------------------------------------------------------------------------------- 123 (434)
T 2db3_A 124 -------------------------------------------------------------------------------- 123 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 124 -------------------------------------------------------------------------------- 123 (434)
T 2db3_A 124 -------------------------------------------------------------------------------- 123 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
.....+|++|||+||||||.|+++.++++..... +++.+
T Consensus 124 --------------------------------------~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~---~~~~~ 162 (434)
T 2db3_A 124 --------------------------------------ELELGRPQVVIVSPTRELAIQIFNEARKFAFESY---LKIGI 162 (434)
T ss_dssp --------------------------------------CCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS---CCCCE
T ss_pred --------------------------------------ccccCCccEEEEecCHHHHHHHHHHHHHHhccCC---cEEEE
Confidence 0012357899999999999999999999987654 88899
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.....+...+.++++|+|+||++|.+++.++.+.++++++|||||||+|++++|.+++..++..+... .+.|
T Consensus 163 ~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----~~~q 238 (434)
T 2db3_A 163 VYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----PEHQ 238 (434)
T ss_dssp ECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC----SSCE
T ss_pred EECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC----CCce
Confidence 999999999988899999999999999999999998999999999999999999999999999999886321 1589
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHH--------------------------HH
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDE--------------------------TW 454 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~--------------------------~~ 454 (651)
+++||||+++ .+..++..++.++..+.+.........+.+.+..++...+. ..
T Consensus 239 ~l~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~ 317 (434)
T 2db3_A 239 TLMFSATFPE-EIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLA 317 (434)
T ss_dssp EEEEESCCCH-HHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHH
T ss_pred EEEEeccCCH-HHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHH
Confidence 9999999997 99999999999999988887776777777766665443210 01
Q ss_pred HHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCc
Q psy8712 455 GRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM 509 (651)
Q Consensus 455 ~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~ 509 (651)
..+ ++..+..++++|+.+++|||+|+|++|||||+|.+.++|+||+|||||+|+.
T Consensus 318 ~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~ 397 (434)
T 2db3_A 318 SFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNN 397 (434)
T ss_dssp HHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCC
T ss_pred HHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCC
Confidence 111 2333556788999999999999999999999999999999999999999999
Q ss_pred eEEEEeeeCC
Q psy8712 510 GLAISLVSTV 519 (651)
Q Consensus 510 G~ai~lv~~~ 519 (651)
|.|++|++++
T Consensus 398 G~a~~~~~~~ 407 (434)
T 2db3_A 398 GRATSFFDPE 407 (434)
T ss_dssp EEEEEEECTT
T ss_pred CEEEEEEecc
Confidence 9999999863
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-48 Score=421.90 Aligned_cols=316 Identities=29% Similarity=0.463 Sum_probs=252.8
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+++|++|++++++.++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+.........
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~------- 86 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL------- 86 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHH-------
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchh-------
Confidence 4679999999999999999999999999999999999999999999999999999999999988662100000
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
.. ..
T Consensus 87 -------------------~~------------------------~~--------------------------------- 90 (417)
T 2i4i_A 87 -------------------RA------------------------MK--------------------------------- 90 (417)
T ss_dssp -------------------HH------------------------HH---------------------------------
T ss_pred -------------------hc------------------------cc---------------------------------
Confidence 00 00
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
.
T Consensus 91 --------------------------------------------------------------~----------------- 91 (417)
T 2i4i_A 91 --------------------------------------------------------------E----------------- 91 (417)
T ss_dssp --------------------------------------------------------------H-----------------
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
.........++++|||+||++||.|+++.++.+....+ +++..
T Consensus 92 ----------------------------------~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~ 134 (417)
T 2i4i_A 92 ----------------------------------NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR---VRPCV 134 (417)
T ss_dssp ----------------------------------CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS---CCEEE
T ss_pred ----------------------------------ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC---ceEEE
Confidence 00000112357899999999999999999999987654 89999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.....+...+.++++|+|+||++|.+++..+.+.++++++|||||||++++++|.+.+..++...... .....|
T Consensus 135 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~--~~~~~~ 212 (417)
T 2i4i_A 135 VYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMP--PKGVRH 212 (417)
T ss_dssp ECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCC--CBTTBE
T ss_pred EECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCC--CcCCcE
Confidence 999999998888888899999999999999999988889999999999999999999999999998853321 112589
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchH----------------------------H
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD----------------------------E 452 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~----------------------------~ 452 (651)
++++|||+++ .+..+...++.+|..+.+........++.+.+..++...+ .
T Consensus 213 ~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~ 291 (417)
T 2i4i_A 213 TMMFSATFPK-EIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 291 (417)
T ss_dssp EEEEESCCCH-HHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHH
T ss_pred EEEEEEeCCH-HHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHH
Confidence 9999999987 8899999999999888877666666677666655543321 1
Q ss_pred HHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 453 TWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 453 ~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
....+ ++..+..++.+|+.+.+|||+|++++||+||+|.+..+|+||+||+||.|
T Consensus 292 l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 371 (417)
T 2i4i_A 292 LEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 371 (417)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--
T ss_pred HHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC
Confidence 11111 12234566778899999999999999999999999999999999999999
Q ss_pred CceEEEEeeeC
Q psy8712 508 RMGLAISLVST 518 (651)
Q Consensus 508 ~~G~ai~lv~~ 518 (651)
+.|.|++|+++
T Consensus 372 ~~g~~~~~~~~ 382 (417)
T 2i4i_A 372 NLGLATSFFNE 382 (417)
T ss_dssp CCEEEEEEECG
T ss_pred CCceEEEEEcc
Confidence 99999999987
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=421.62 Aligned_cols=248 Identities=29% Similarity=0.506 Sum_probs=213.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++|||+||++|+.|+++.++.++.... +++..+.||.....+...+..+++|+|+||+++.+++.++.+.+.+++
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~ 181 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 181 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCC---eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhee
Confidence 35799999999999999999999987665 889999999999888888888999999999999999999888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEE
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVV 443 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~ 443 (651)
+|||||||++++++|...+..+++.++. ..|++++|||+++ .+.++...++.+|..+.+.........+.+.+
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPP------ATQVVLISATLPH-EILEMTNKFMTDPIRILVKRDELTLEGIKQFF 254 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCT------TCEEEEEESCCCH-HHHTTGGGTCSSCEEECCCGGGCSCTTEEEEE
T ss_pred EEEEccHHHHHhhhhHHHHHHHHHhCcc------CceEEEEEcCCCH-HHHHHHHHHcCCCEEEEecCccccCCCceEEE
Confidence 9999999999999999999999998876 6899999999997 88888888999998887776666666777666
Q ss_pred EEeCcch--------------------------H--HHHHHH-------------------------hhccccceeeccc
Q psy8712 444 VKIDPQQ--------------------------D--ETWGRL-------------------------RSHIQTDGVHARD 470 (651)
Q Consensus 444 ~~~~~~~--------------------------~--~~~~~l-------------------------~~~~~~~~l~~td 470 (651)
..++... . .....+ ++.....++.+|+
T Consensus 255 ~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~ 334 (410)
T 2j0s_A 255 VAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 334 (410)
T ss_dssp EEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG
T ss_pred EEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 6554432 1 011111 2223456778899
Q ss_pred cccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCC
Q psy8712 471 NARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQ 550 (651)
Q Consensus 471 ~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 550 (651)
.+.+|+|+|++++||+||+|.+...|+||+||+||.|+.|.|++|+++
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~-------------------------------- 382 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN-------------------------------- 382 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEG--------------------------------
T ss_pred hhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecH--------------------------------
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred cchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccc
Q psy8712 551 VPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDK 591 (651)
Q Consensus 551 ~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~ 591 (651)
+|...+++|+++++..+.++|.+
T Consensus 383 ------------------~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 383 ------------------DDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp ------------------GGHHHHHHHHHHTTCCCEECCSC
T ss_pred ------------------HHHHHHHHHHHHhCCCceecccc
Confidence 67889999999999999988755
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=406.93 Aligned_cols=318 Identities=29% Similarity=0.495 Sum_probs=261.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|+++++++.+.++|.++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+..
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~--------------- 104 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL--------------- 104 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT---------------
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh---------------
Confidence 57999999999999999999999999999999999999999999999999999999999974421
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 105 -------------------------------------------------------------------------------- 104 (414)
T 3eiq_A 105 -------------------------------------------------------------------------------- 104 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 105 -------------------------------------------------------------------------------- 104 (414)
T 3eiq_A 105 -------------------------------------------------------------------------------- 104 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++++||++||++|+.|+.+.++.++.... +.+..+
T Consensus 105 ---------------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~ 142 (414)
T 3eiq_A 105 ---------------------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYMG---ASCHAC 142 (414)
T ss_dssp ---------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC---CCEEEC
T ss_pred ---------------------------------------cCCceeEEEEeChHHHHHHHHHHHHHHhcccC---ceEEEE
Confidence 01234799999999999999999999987765 888899
Q ss_pred eCCccHHHHHHHhc-cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLS-SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~-~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.....+...+. .+++|+|+||++|.+++..+.+.++++++|||||||++.+++|...+..++..++. +.|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~------~~~ 216 (414)
T 3eiq_A 143 IGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS------NTQ 216 (414)
T ss_dssp CCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCT------TCE
T ss_pred ECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCC------CCe
Confidence 99998888877766 67899999999999999998888999999999999999999999999999999876 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcch--------------------------H--H
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQ--------------------------D--E 452 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~--------------------------~--~ 452 (651)
++++|||+++ .+..+...++.+|..+.+.........+.+.+..+.... . .
T Consensus 217 ~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~ 295 (414)
T 3eiq_A 217 VVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDW 295 (414)
T ss_dssp EEEECSCCCH-HHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHH
T ss_pred EEEEEEecCH-HHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHH
Confidence 9999999997 899999999999988887776666666666555443321 1 1
Q ss_pred HHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCC
Q psy8712 453 TWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAE 507 (651)
Q Consensus 453 ~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g 507 (651)
....+ ++.....++.+|+.+.+|||+|++++||+||+|.+..+|+||+||+||.|
T Consensus 296 l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g 375 (414)
T 3eiq_A 296 LTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG 375 (414)
T ss_dssp HHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC----
T ss_pred HHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCC
Confidence 11111 22334567889999999999999999999999999999999999999999
Q ss_pred CceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccc
Q psy8712 508 RMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQ 587 (651)
Q Consensus 508 ~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~ 587 (651)
+.|.|++|+++ +|...+++|+++++..+.+
T Consensus 376 ~~g~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 376 RKGVAINMVTE--------------------------------------------------EDKRTLRDIETFYNTSIEE 405 (414)
T ss_dssp ---CEEEEECS--------------------------------------------------THHHHHHHHHHHTTCCCEE
T ss_pred CCceEEEEEcH--------------------------------------------------HHHHHHHHHHHHHcCCccc
Confidence 99999999998 5788899999999999998
Q ss_pred cccccc
Q psy8712 588 VDDKLE 593 (651)
Q Consensus 588 ~~~~~~ 593 (651)
++.++.
T Consensus 406 ~~~~~~ 411 (414)
T 3eiq_A 406 MPLNVA 411 (414)
T ss_dssp CCC---
T ss_pred cChhhh
Confidence 876643
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=397.13 Aligned_cols=248 Identities=29% Similarity=0.464 Sum_probs=205.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++||++||++|+.|+++.++.+....+ +++..+.|+.....+...+..+++|+|+||+++.+++......+++++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~ 165 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCS 165 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccC---ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCC
Confidence 34799999999999999999999987654 889999999998888777888899999999999999988888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEE
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVV 443 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~ 443 (651)
+||+||||++++.+|...+..++..++. ..|++++|||++. .+..+...++.+|..+.+... .....+.+.+
T Consensus 166 ~vIiDEaH~~~~~~~~~~~~~i~~~~~~------~~~~i~lSAT~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 237 (400)
T 1s2m_A 166 LFIMDEADKMLSRDFKTIIEQILSFLPP------THQSLLFSATFPL-TVKEFMVKHLHKPYEINLMEE-LTLKGITQYY 237 (400)
T ss_dssp EEEEESHHHHSSHHHHHHHHHHHTTSCS------SCEEEEEESCCCH-HHHHHHHHHCSSCEEESCCSS-CBCTTEEEEE
T ss_pred EEEEeCchHhhhhchHHHHHHHHHhCCc------CceEEEEEecCCH-HHHHHHHHHcCCCeEEEeccc-cccCCceeEE
Confidence 9999999999998899999999988876 5899999999997 888888888888876655433 2333444444
Q ss_pred -------------------------EEeCcchHH--HHHHH-------------------------hhccccceeecccc
Q psy8712 444 -------------------------VKIDPQQDE--TWGRL-------------------------RSHIQTDGVHARDN 471 (651)
Q Consensus 444 -------------------------~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~~td~ 471 (651)
++|+..+.. ....+ +...+..++.+|+.
T Consensus 238 ~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~ 317 (400)
T 1s2m_A 238 AFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL 317 (400)
T ss_dssp EECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC
T ss_pred EEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc
Confidence 444332211 11111 22334567889999
Q ss_pred ccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCc
Q psy8712 472 ARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQV 551 (651)
Q Consensus 472 ~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 551 (651)
+.+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++
T Consensus 318 ~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~--------------------------------- 364 (400)
T 1s2m_A 318 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINW--------------------------------- 364 (400)
T ss_dssp SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECG---------------------------------
T ss_pred cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEecc---------------------------------
Confidence 99999999999999999999999999999999999999999999988
Q ss_pred chhhccccccCCcccchhHHHHHHHHHHHhcCccccccccc
Q psy8712 552 PIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKL 592 (651)
Q Consensus 552 ~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~ 592 (651)
+|...++.|++.++.+++.+|..+
T Consensus 365 -----------------~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 365 -----------------NDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp -----------------GGHHHHHHHHHHHTCCCEECCSSC
T ss_pred -----------------chHHHHHHHHHHhCCCcccccccc
Confidence 577889999999999999887653
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=420.32 Aligned_cols=255 Identities=24% Similarity=0.397 Sum_probs=198.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccC-CCCCeeEEEEeCCccHHHHHHHhcc-CCcEEEECchhhHHHHhCC-CcccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFI-TDPKIRELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGG-HLSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~i~v~~l~Gg~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~-~l~l~ 360 (651)
++++|||+||++||.|+++.++.+.... ..+.+.+..+.||.....+...+.. +++|+|+||++|.+++.+. ...++
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 4689999999999999999999986431 1124778889999998888877744 7999999999999988765 45678
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccC-CCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC----CCc
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITS-DGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE----DAV 435 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~-~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~----~~~ 435 (651)
++++|||||||+|++++|.+++..++..++.... ...++|+++||||+++ .+..++..++.+|..+.+... ...
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHHHHHHHcCCCceEEEeecCcccccc
Confidence 9999999999999999999999999887654321 1125799999999997 899999999988876654332 122
Q ss_pred cCceEE-------------------------------EEEEeCcchHH--HHHHH-------------------------
Q psy8712 436 PETVHH-------------------------------VVVKIDPQQDE--TWGRL------------------------- 457 (651)
Q Consensus 436 ~~~i~~-------------------------------~~~~~~~~~~~--~~~~l------------------------- 457 (651)
...+.+ .+++|++.... ....+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 233333 44444443211 11111
Q ss_pred ---hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccC
Q psy8712 458 ---RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRG 534 (651)
Q Consensus 458 ---~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~ 534 (651)
+...+..++++|+.+.+|||+|+|++|||||+|.+.++|+||+|||||+|+.|.|++|+++
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~---------------- 397 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK---------------- 397 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG----------------
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcc----------------
Confidence 1222455677899999999999999999999999999999999999999999999999998
Q ss_pred CccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 535 RNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
+|...++.|++..+..+...+
T Consensus 398 ----------------------------------~e~~~~~~l~~~~~~~~~~~~ 418 (579)
T 3sqw_A 398 ----------------------------------DELPFVRELEDAKNIVIAKQE 418 (579)
T ss_dssp ----------------------------------GGHHHHHHHHHHHCCCCCEEE
T ss_pred ----------------------------------cHHHHHHHHHHHhCCCccccc
Confidence 678889999999887776543
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=393.63 Aligned_cols=253 Identities=26% Similarity=0.466 Sum_probs=206.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc-CCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
++++||++||++|+.|+.+.++++....+ ++++..+.||.....+...+.+ .++|+|+||+++.+++....+.++++
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 153 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMP--NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 153 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCT--TCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCC--CeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccc
Confidence 34799999999999999999999987653 4889999999988777776655 47999999999999999888889999
Q ss_pred ceEeeccchhhhhc-cchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCC-CccCceE
Q psy8712 363 RFFVLDEADGLLKQ-GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED-AVPETVH 440 (651)
Q Consensus 363 ~~lViDEaD~ll~~-gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~-~~~~~i~ 440 (651)
++||+||||++.++ ++...+..++..++. ..|++++|||+++ .+..+...++.+|..+.+.... .....+.
T Consensus 154 ~~vViDEaH~~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (391)
T 1xti_A 154 KHFILDECDKMLEQLDMRRDVQEIFRMTPH------EKQVMMFSATLSK-EIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 226 (391)
T ss_dssp SEEEECSHHHHTSSHHHHHHHHHHHHTSCS------SSEEEEEESSCCS-THHHHHHHHCSSCEEEECCCCCCCCCTTCE
T ss_pred CEEEEeCHHHHhhccchHHHHHHHHhhCCC------CceEEEEEeeCCH-HHHHHHHHHcCCCeEEEecCccccCcccce
Confidence 99999999999884 788889999888876 6899999999997 8889999999999887765543 2333444
Q ss_pred EEE-------------------------EEeCcchHH--HHHHH-------------------------hhccccceeec
Q psy8712 441 HVV-------------------------VKIDPQQDE--TWGRL-------------------------RSHIQTDGVHA 468 (651)
Q Consensus 441 ~~~-------------------------~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~~ 468 (651)
+.+ ++|+..+.. ....+ +......++.+
T Consensus 227 ~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 306 (391)
T 1xti_A 227 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 306 (391)
T ss_dssp EEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 443 444333211 11111 22334567888
Q ss_pred cccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCC
Q psy8712 469 RDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGN 548 (651)
Q Consensus 469 td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~ 548 (651)
|+.+.+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++.
T Consensus 307 T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~----------------------------- 357 (391)
T 1xti_A 307 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE----------------------------- 357 (391)
T ss_dssp SCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSH-----------------------------
T ss_pred CChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEccc-----------------------------
Confidence 999999999999999999999999999999999999999999999999872
Q ss_pred CCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccccccccC
Q psy8712 549 SQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLEI 594 (651)
Q Consensus 549 ~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~~ 594 (651)
++...++.+++.++.++.++|.++..
T Consensus 358 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (391)
T 1xti_A 358 --------------------NDAKILNDVQDRFEVNISELPDEIDI 383 (391)
T ss_dssp --------------------HHHHHHHHHHHHTTCCCEECCSCCCG
T ss_pred --------------------chHHHHHHHHHHhcCChhhCCccccH
Confidence 56788899999999999988876543
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=397.08 Aligned_cols=247 Identities=30% Similarity=0.472 Sum_probs=200.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l 362 (651)
++++|||+||++|+.|+++.++.+..... .+++....++....... ...++|+|+||+++.+++.+ +.+.++++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYP--ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTST--TCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcc--cceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 45799999999999999999999987654 47778888877654332 34689999999999998865 66778999
Q ss_pred ceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE
Q psy8712 363 RFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH 441 (651)
Q Consensus 363 ~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~ 441 (651)
++|||||||++++ .++...+..+...++. +.|++++|||+++ .+..+...++.+|..+.+.........+.+
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPR------NCQMLLFSATFED-SVWKFAQKVVPDPNVIKLKREEETLDTIKQ 242 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCT------TCEEEEEESCCCH-HHHHHHHHHSSSCEEECCCGGGSSCTTEEE
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCC------CceEEEEEeecCH-HHHHHHHHhcCCCeEEeeccccccccCceE
Confidence 9999999999997 6788888888888876 6899999999997 899999999999998888777777777766
Q ss_pred EEEEeCcc--------------------------hH--HHHHHH-------------------------hhccccceeec
Q psy8712 442 VVVKIDPQ--------------------------QD--ETWGRL-------------------------RSHIQTDGVHA 468 (651)
Q Consensus 442 ~~~~~~~~--------------------------~~--~~~~~l-------------------------~~~~~~~~l~~ 468 (651)
.+..+... .. .....+ ++..+..++.+
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 322 (412)
T 3fht_A 243 YYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 322 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 65554432 11 111111 22335667889
Q ss_pred cccccCCCCCCCCCEEEEeCCC------CChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCccc
Q psy8712 469 RDNARPGIDISGLPFIINMTLP------DDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQL 542 (651)
Q Consensus 469 td~~~rGIDip~v~~VIn~dlP------~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l 542 (651)
|+.+.+|||+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+.
T Consensus 323 T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~----------------------- 379 (412)
T 3fht_A 323 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK----------------------- 379 (412)
T ss_dssp CGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH-----------------------
T ss_pred cCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcCh-----------------------
Confidence 9999999999999999999999 56789999999999999999999999872
Q ss_pred ccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccc
Q psy8712 543 TDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDK 591 (651)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~ 591 (651)
++...++.|+++++..+..++.+
T Consensus 380 --------------------------~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 380 --------------------------HSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp --------------------------HHHHHHHHHHHHHTCCCEEC---
T ss_pred --------------------------hhHHHHHHHHHHHCCccccCCCc
Confidence 56888999999999998887644
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=415.70 Aligned_cols=255 Identities=24% Similarity=0.403 Sum_probs=197.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccC-CCCCeeEEEEeCCccHHHHHHHh-ccCCcEEEECchhhHHHHhCC-CcccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFI-TDPKIRELLIIGGVNVKDQMSVL-SSGVDIVVGTPGRMEDLISGG-HLSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~i~v~~l~Gg~~~~~q~~~L-~~~~dIlV~TP~rL~~ll~~~-~l~l~ 360 (651)
++++|||+||++||.|+++.++.+.... ....+.+..++||.....+...+ ..+++|+|+||++|.+++.+. ...++
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccc
Confidence 4589999999999999999999975432 11246788899999988877766 448999999999999988765 34678
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccC-CCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCC----Cc
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITS-DGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED----AV 435 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~-~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~----~~ 435 (651)
++++|||||||++++++|.+++..++..++.... ...++|+++||||+++ .+..++..++.++..+.+.... ..
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEA 304 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHHHHHHhcCCCceEEEeccCCCCccc
Confidence 9999999999999999999999998877654221 1225899999999997 8899999999887766543221 12
Q ss_pred cCceE-------------------------------EEEEEeCcchHHH--HHHH-------------------------
Q psy8712 436 PETVH-------------------------------HVVVKIDPQQDET--WGRL------------------------- 457 (651)
Q Consensus 436 ~~~i~-------------------------------~~~~~~~~~~~~~--~~~l------------------------- 457 (651)
...+. ..+++|++..... ...+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~ 384 (563)
T 3i5x_A 305 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 384 (563)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred cccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHH
Confidence 22333 3455555433111 1111
Q ss_pred ---hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccC
Q psy8712 458 ---RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRG 534 (651)
Q Consensus 458 ---~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~ 534 (651)
+...+..++++|+.+.+|||+|+|++|||||+|.++++|+||+|||||+|+.|.|++|+.+
T Consensus 385 ~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~---------------- 448 (563)
T 3i5x_A 385 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICK---------------- 448 (563)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG----------------
T ss_pred HHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEch----------------
Confidence 1223456778899999999999999999999999999999999999999999999999998
Q ss_pred CccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 535 RNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 535 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
+|...++.|++..+..+...+
T Consensus 449 ----------------------------------~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 449 ----------------------------------DELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp ----------------------------------GGHHHHHHHHHHHCCCCCEEE
T ss_pred ----------------------------------hHHHHHHHHHHHhCCCccccc
Confidence 678889999998887776543
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=418.12 Aligned_cols=224 Identities=29% Similarity=0.450 Sum_probs=115.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l 362 (651)
++++|||+||++||.|+++.++.+..+.. .+.+....++....... ...++|+|+||++|.+++.+ +.+.++++
T Consensus 162 ~~~~lil~Pt~~La~Q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 236 (479)
T 3fmp_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYP--ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (479)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTST--TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGC
T ss_pred CCcEEEEeChHHHHHHHHHHHHHHHhhCC--CceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccC
Confidence 45899999999999999999999987654 47777788876644321 34679999999999998865 56778999
Q ss_pred ceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE
Q psy8712 363 RFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH 441 (651)
Q Consensus 363 ~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~ 441 (651)
++|||||||++++ ++|...+..+.+.++. ++|++++|||++. .+..++..++.+|..+.+.........+.+
T Consensus 237 ~~iViDEah~~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 309 (479)
T 3fmp_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPR------NCQMLLFSATFED-SVWKFAQKVVPDPNVIKLKREEETLDTIKQ 309 (479)
T ss_dssp CEEEECCHHHHHTSTTHHHHHHHHHTTSCT------TSEEEEEESCCCH-HHHHHHHHHSSSEEEEEEC-----------
T ss_pred CEEEEECHHHHhhcCCcHHHHHHHHhhCCc------cceEEEEeCCCCH-HHHHHHHHHcCCCeEEeccccccCcCCceE
Confidence 9999999999997 6888888899888876 6899999999997 899999999999988887766555555554
Q ss_pred EEEEeC--------------------------cchHH--HH-------------------------HHHhhccccceeec
Q psy8712 442 VVVKID--------------------------PQQDE--TW-------------------------GRLRSHIQTDGVHA 468 (651)
Q Consensus 442 ~~~~~~--------------------------~~~~~--~~-------------------------~~l~~~~~~~~l~~ 468 (651)
.++.++ ..... .. ...+......++.+
T Consensus 310 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~ 389 (479)
T 3fmp_B 310 YYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 389 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 444333 22110 00 00122335667889
Q ss_pred cccccCCCCCCCCCEEEEeCCC------CChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 469 RDNARPGIDISGLPFIINMTLP------DDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 469 td~~~rGIDip~v~~VIn~dlP------~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
|+.+.+|||+|++++|||||+| .+..+|+||+|||||+|+.|.|++|+++.
T Consensus 390 T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 390 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp ---------------------------------------------------------
T ss_pred ccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 9999999999999999999999 46789999999999999999999999873
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=387.33 Aligned_cols=221 Identities=33% Similarity=0.561 Sum_probs=180.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++|||+||++|+.|+++.++.+..... +.+....++...... ..+++|+|+||+++.+++.+..+.+++++
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~ 147 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEMGKFTK---ITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIK 147 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCC
T ss_pred CccEEEECCCHHHHHHHHHHHHHHhcccC---eeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCC
Confidence 35799999999999999999999987654 777777776543322 34689999999999999998888899999
Q ss_pred eEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEE
Q psy8712 364 FFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHV 442 (651)
Q Consensus 364 ~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~ 442 (651)
+||+||||++.+ +++...+..+...++. +.|++++|||+++ .+..+...++.++..+.+.........+.+.
T Consensus 148 ~iIiDEah~~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (395)
T 3pey_A 148 IFVLDEADNMLDQQGLGDQCIRVKRFLPK------DTQLVLFSATFAD-AVRQYAKKIVPNANTLELQTNEVNVDAIKQL 220 (395)
T ss_dssp EEEEETHHHHHHSTTHHHHHHHHHHTSCT------TCEEEEEESCCCH-HHHHHHHHHSCSCEEECCCGGGCSCTTEEEE
T ss_pred EEEEEChhhhcCccccHHHHHHHHHhCCC------CcEEEEEEecCCH-HHHHHHHHhCCCCeEEEccccccccccccEE
Confidence 999999999998 6888888889888876 6899999999997 8899999999888887776665555555555
Q ss_pred EEEe--------------------------CcchH--HHHHHH-------------------------hhccccceeecc
Q psy8712 443 VVKI--------------------------DPQQD--ETWGRL-------------------------RSHIQTDGVHAR 469 (651)
Q Consensus 443 ~~~~--------------------------~~~~~--~~~~~l-------------------------~~~~~~~~l~~t 469 (651)
+..+ +.... .....+ ++..+..++.+|
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 300 (395)
T 3pey_A 221 YMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT 300 (395)
T ss_dssp EEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred EEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC
Confidence 4443 33221 111111 233355678899
Q ss_pred ccccCCCCCCCCCEEEEeCCCC------ChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 470 DNARPGIDISGLPFIINMTLPD------DKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 470 d~~~rGIDip~v~~VIn~dlP~------s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
+.+.+|||+|++++||+||+|. +..+|+||+||+||.|+.|.+++++.+
T Consensus 301 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 355 (395)
T 3pey_A 301 NVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHD 355 (395)
T ss_dssp GGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECS
T ss_pred ChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEec
Confidence 9999999999999999999998 999999999999999999999999987
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=396.85 Aligned_cols=316 Identities=30% Similarity=0.492 Sum_probs=182.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|+++++++++.++|.++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+..
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~--------------- 85 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--------------- 85 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc---------------
Confidence 46999999999999999999999999999999999999999999999999999999999974421
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 86 -------------------------------------------------------------------------------- 85 (394)
T 1fuu_A 86 -------------------------------------------------------------------------------- 85 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 86 -------------------------------------------------------------------------------- 85 (394)
T 1fuu_A 86 -------------------------------------------------------------------------------- 85 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++++||++||++|+.|+++.++.+....+ +++..+
T Consensus 86 ---------------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~ 123 (394)
T 1fuu_A 86 ---------------------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMD---IKVHAC 123 (394)
T ss_dssp ---------------------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEE
T ss_pred ---------------------------------------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC---eeEEEE
Confidence 01245799999999999999999999887654 889999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
.|+.....+...+. +++|+|+||+++.+.+..+.+.+.++++||+||||++.+++|...+..++..++. ..|+
T Consensus 124 ~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~------~~~~ 196 (394)
T 1fuu_A 124 IGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------TTQV 196 (394)
T ss_dssp CSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT------TCEE
T ss_pred eCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCC------CceE
Confidence 99998877666555 5899999999999999988888899999999999999999999999999999876 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE--------------------------EEEEeCcchH--HH
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH--------------------------VVVKIDPQQD--ET 453 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~--------------------------~~~~~~~~~~--~~ 453 (651)
+++|||+++ .+.++...++.+|..+.+.........+.+ .+++|+..+. ..
T Consensus 197 i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 197 VLLSATMPN-DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp EEECSSCCH-HHHHHHHHHCCSCEEEEECC--------------------------------------------------
T ss_pred EEEEEecCH-HHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHH
Confidence 999999997 888888889888887766554433333332 2333333221 00
Q ss_pred HHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC
Q psy8712 454 WGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER 508 (651)
Q Consensus 454 ~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~ 508 (651)
...+ +......++.+|+.+.+|+|+|++++||+||+|.+..+|+||+||+||.|+
T Consensus 276 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 276 TTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 355 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCC
Confidence 0000 122345677889999999999999999999999999999999999999999
Q ss_pred ceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 509 MGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 509 ~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
.|.|++++++ +|...++.|+++++.++..+
T Consensus 356 ~g~~~~~~~~--------------------------------------------------~~~~~~~~l~~~~~~~~~~~ 385 (394)
T 1fuu_A 356 KGVAINFVTN--------------------------------------------------EDVGAMRELEKFYSTQIEEL 385 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEch--------------------------------------------------hHHHHHHHHHHHhCCccccc
Confidence 9999999987 46667888889888888877
Q ss_pred cccc
Q psy8712 589 DDKL 592 (651)
Q Consensus 589 ~~~~ 592 (651)
+.++
T Consensus 386 ~~~~ 389 (394)
T 1fuu_A 386 PSDI 389 (394)
T ss_dssp ----
T ss_pred Ccch
Confidence 7543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=375.40 Aligned_cols=241 Identities=31% Similarity=0.494 Sum_probs=197.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++||++||++|+.|+.+.++.+..... +++..+.|+.....+...+. +++|+|+||+++.+++..+.+.+.+++
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~ 149 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKN---LKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVK 149 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSC---CCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCC
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCC---ceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCC
Confidence 34799999999999999999999876544 88899999998877766665 689999999999999998888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEE--
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHH-- 441 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~-- 441 (651)
++|+||||.+.+++|...+..++..++. ..|++++|||+++ .+..+...++.++..+...... .+.+
T Consensus 150 ~iIiDEah~~~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 218 (367)
T 1hv8_A 150 YFILDEADEMLNMGFIKDVEKILNACNK------DKRILLFSATMPR-EILNLAKKYMGDYSFIKAKINA----NIEQSY 218 (367)
T ss_dssp EEEEETHHHHHTTTTHHHHHHHHHTSCS------SCEEEEECSSCCH-HHHHHHHHHCCSEEEEECCSSS----SSEEEE
T ss_pred EEEEeCchHhhhhchHHHHHHHHHhCCC------CceEEEEeeccCH-HHHHHHHHHcCCCeEEEecCCC----CceEEE
Confidence 9999999999999999999999988876 6899999999997 7888888888777665543322 2222
Q ss_pred ----------------------EEEEeCcchHH--HHHHH-------------------------hhccccceeeccccc
Q psy8712 442 ----------------------VVVKIDPQQDE--TWGRL-------------------------RSHIQTDGVHARDNA 472 (651)
Q Consensus 442 ----------------------~~~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~~td~~ 472 (651)
.+++|+..+.. ....+ +...+..++.+|+.+
T Consensus 219 ~~~~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 298 (367)
T 1hv8_A 219 VEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVM 298 (367)
T ss_dssp EECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTH
T ss_pred EEeChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChh
Confidence 34445443211 11111 223355678889999
Q ss_pred cCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcc
Q psy8712 473 RPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVP 552 (651)
Q Consensus 473 ~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 552 (651)
.+|+|+|++++||+|++|.+..+|+||+||+||.|+.|.+++++++
T Consensus 299 ~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~---------------------------------- 344 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINR---------------------------------- 344 (367)
T ss_dssp HHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECT----------------------------------
T ss_pred hcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcH----------------------------------
Confidence 9999999999999999999999999999999999999999999987
Q ss_pred hhhccccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 553 IFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 553 ~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
+|...++.|++.++.++..++
T Consensus 345 ----------------~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 345 ----------------REYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ----------------TSHHHHHHHHHHHTCCCCCBC
T ss_pred ----------------HHHHHHHHHHHHhCCCCceec
Confidence 577889999999999887664
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=357.97 Aligned_cols=219 Identities=27% Similarity=0.417 Sum_probs=179.8
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++||++||++|+.|+++.++++....+ +++..+.|+.....+...+.+ ++|+|+||+++.+++..+.+.+.+++++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~i 133 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYMD---TKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIV 133 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhcC---CcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEE
Confidence 589999999999999999999987665 888999999988877766654 8999999999999998888888999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEE-
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVV- 444 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~- 444 (651)
|+||||++.++++...+..++..++. ..+++++|||+++ .+......++.++..+... ....++.+.++
T Consensus 134 ViDEah~~~~~~~~~~~~~~~~~~~~------~~~~~~~SAT~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 203 (337)
T 2z0m_A 134 IIDEADLMFEMGFIDDIKIILAQTSN------RKITGLFSATIPE-EIRKVVKDFITNYEEIEAC---IGLANVEHKFVH 203 (337)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHCTT------CSEEEEEESCCCH-HHHHHHHHHSCSCEEEECS---GGGGGEEEEEEE
T ss_pred EEEChHHhhccccHHHHHHHHhhCCc------ccEEEEEeCcCCH-HHHHHHHHhcCCceeeecc---cccCCceEEEEE
Confidence 99999999999999999999998876 5899999999997 8888888888887665432 22333444333
Q ss_pred ----------------------EeCcchH-----------------------HHHHHHhhccccceeeccccccCCCCCC
Q psy8712 445 ----------------------KIDPQQD-----------------------ETWGRLRSHIQTDGVHARDNARPGIDIS 479 (651)
Q Consensus 445 ----------------------~~~~~~~-----------------------~~~~~l~~~~~~~~l~~td~~~rGIDip 479 (651)
+++..+. ......+...+..++.+|+.+.+|+|+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~ 283 (337)
T 2z0m_A 204 VKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIP 283 (337)
T ss_dssp CSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCC
T ss_pred eChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCcc
Confidence 3333221 1111112334567788999999999999
Q ss_pred CCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 480 GLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 480 ~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
++++||+||+|.+..+|+||+||+||.|+.|.|++++..
T Consensus 284 ~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~ 322 (337)
T 2z0m_A 284 LVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILN 322 (337)
T ss_dssp CBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEESS
T ss_pred CCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEeC
Confidence 999999999999999999999999999999999999983
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=358.85 Aligned_cols=221 Identities=16% Similarity=0.238 Sum_probs=163.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH---HHHHHHhccC-CcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV---KDQMSVLSSG-VDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~---~~q~~~L~~~-~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
+++|||+||++||.|+++.++.++. . ++++..++||.+. ..+...+..+ ++|+|+||+++.+++.. +.++
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~-~---~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~ 138 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLAD-E---KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQK 138 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCC-S---SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHHcc-C---CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccc
Confidence 4799999999999999999999876 3 4899999999988 5666677666 99999999999988764 6678
Q ss_pred CcceEeeccchhhh----------h-ccchHH-HHHHHhcCC-----CccCCCCceeEEEEeec-cChHHHH-HHHHHhc
Q psy8712 361 HCRFFVLDEADGLL----------K-QGYGNL-IDRMHKQIP-----KITSDGKRLQMIVCSAT-LHDFDVK-KMAERLM 421 (651)
Q Consensus 361 ~l~~lViDEaD~ll----------~-~gf~~~-i~~il~~lp-----~~~~~~~~~Q~l~~SAT-l~~~~v~-~l~~~~l 421 (651)
++++|||||||++. + ++|.++ +..++..++ ...+...+.|++++||| .+. .+. .+...++
T Consensus 139 ~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~-~~~~~~~~~~~ 217 (414)
T 3oiy_A 139 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPR-GIRPLLFRDLL 217 (414)
T ss_dssp CCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCC-SSTTHHHHHHH
T ss_pred cccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcc-hhHHHHHHHhh
Confidence 99999999997665 4 778888 788887764 10111126899999999 453 443 3333333
Q ss_pred cCCeEEEccCCCCccCceEE---------------------EEEEeCcchHH--HHHHH--------------------h
Q psy8712 422 YFPTWVDLKGEDAVPETVHH---------------------VVVKIDPQQDE--TWGRL--------------------R 458 (651)
Q Consensus 422 ~~p~~i~~~~~~~~~~~i~~---------------------~~~~~~~~~~~--~~~~l--------------------~ 458 (651)
. +.+........++.+ .+++|+..... ....+ +
T Consensus 218 ~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~~~~f 293 (414)
T 3oiy_A 218 N----FTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDF 293 (414)
T ss_dssp S----CCSSCCCCCCCSEEEEEESSCCHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHHHHHH
T ss_pred c----cCcCccccccccchheeeccCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchHHHHH
Confidence 2 122222233333433 44555543321 11111 2
Q ss_pred hccccceeec----cccccCCCCCCC-CCEEEEeCCC--CChhhhhhhcCccccCC----CceEEEEee
Q psy8712 459 SHIQTDGVHA----RDNARPGIDISG-LPFIINMTLP--DDKANYVHRIGRVGRAE----RMGLAISLV 516 (651)
Q Consensus 459 ~~~~~~~l~~----td~~~rGIDip~-v~~VIn~dlP--~s~~~YihRiGR~GR~g----~~G~ai~lv 516 (651)
+..+..++++ |+.+.+|||+|+ |++|||||+| .+..+|+||+||+||.| +.|.+++|+
T Consensus 294 ~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 294 KVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp HTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred hCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 2234567889 999999999999 9999999999 99999999999999998 589999998
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=366.06 Aligned_cols=219 Identities=17% Similarity=0.202 Sum_probs=159.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h---ccCCcEEEECchhhH------HHHh
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L---SSGVDIVVGTPGRME------DLIS 353 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L---~~~~dIlV~TP~rL~------~ll~ 353 (651)
++|||+|+++|+.|+.+.++.++ +++..+.|+.+..++... + ...++|+|+||++|. +.+.
T Consensus 86 ~~lVisP~~~L~~q~~~~l~~~g-------i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 86 FTLVICPLISLMEDQLMVLKQLG-------ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHT-------CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred cEEEEeCHHHHHHHHHHHHHhcC-------CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 68999999999999999999873 788889998876655432 2 357899999999874 2232
Q ss_pred CCCcccCCcceEeeccchhhhhcc--chHHHHH---HHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEE
Q psy8712 354 GGHLSLTHCRFFVLDEADGLLKQG--YGNLIDR---MHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVD 428 (651)
Q Consensus 354 ~~~l~l~~l~~lViDEaD~ll~~g--f~~~i~~---il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~ 428 (651)
....+.++.+|||||||++++|| |.+++.. +...+| +.|++++|||+++ .+...+..++..+..+.
T Consensus 159 -~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~-------~~~ii~lSAT~~~-~v~~~i~~~l~~~~~~~ 229 (591)
T 2v1x_A 159 -KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP-------NASLIGLTATATN-HVLTDAQKILCIEKCFT 229 (591)
T ss_dssp -HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT-------TSEEEEEESSCCH-HHHHHHHHHTTCCSCEE
T ss_pred -hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCC-------CCcEEEEecCCCH-HHHHHHHHHhCCCCcEE
Confidence 24457889999999999999988 7777654 333444 4799999999997 66666665554332111
Q ss_pred ccCCCCccCce----------------------------EEEEEEeCcchHH--HHHHH---------------------
Q psy8712 429 LKGEDAVPETV----------------------------HHVVVKIDPQQDE--TWGRL--------------------- 457 (651)
Q Consensus 429 ~~~~~~~~~~i----------------------------~~~~~~~~~~~~~--~~~~l--------------------- 457 (651)
+... ....++ ...+++|++.+.. ....|
T Consensus 230 ~~~~-~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~ 308 (591)
T 2v1x_A 230 FTAS-FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTT 308 (591)
T ss_dssp EECC-CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EecC-CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHH
Confidence 1110 111111 3455666554321 11111
Q ss_pred ----hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 458 ----RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 458 ----~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
+......++++|+.+.+|||+|+|++|||||+|.+.++|+||+||+||+|+.|.|++|+++.|.
T Consensus 309 ~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 309 VHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp HHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred HHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 2333556788999999999999999999999999999999999999999999999999987543
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=360.91 Aligned_cols=220 Identities=16% Similarity=0.195 Sum_probs=158.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---h-ccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---L-SSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L-~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.+|||+|+++|+.|+.+.++.++ +++..+.++......... + ...++|+|+||+++........+...+
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~g-------i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~ 139 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQANG-------VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWN 139 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSC
T ss_pred CEEEECChHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCC
Confidence 58999999999999999998764 778888888776554322 2 346899999999985322222334578
Q ss_pred cceEeeccchhhhhcc--chHHHHHH---HhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-ccCCeEEEccCCCCc
Q psy8712 362 CRFFVLDEADGLLKQG--YGNLIDRM---HKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-MYFPTWVDLKGEDAV 435 (651)
Q Consensus 362 l~~lViDEaD~ll~~g--f~~~i~~i---l~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l~~p~~i~~~~~~~~ 435 (651)
+.+|||||||++++|| |.+.+..+ ...+| +.+++++|||+++....++.+.+ +.+|..+. ... .
T Consensus 140 ~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~--~ 209 (523)
T 1oyw_A 140 PVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------TLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSF--D 209 (523)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-------TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCC--C
T ss_pred CCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-------CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCC--C
Confidence 9999999999999987 77765544 44444 37999999999974445555554 24443332 211 1
Q ss_pred cCceE-----------------------EEEEEeCcchHH--HHHHH-------------------------hhccccce
Q psy8712 436 PETVH-----------------------HVVVKIDPQQDE--TWGRL-------------------------RSHIQTDG 465 (651)
Q Consensus 436 ~~~i~-----------------------~~~~~~~~~~~~--~~~~l-------------------------~~~~~~~~ 465 (651)
..++. ..+++|++.+.. ....+ +...+..+
T Consensus 210 r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~v 289 (523)
T 1oyw_A 210 RPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQI 289 (523)
T ss_dssp CTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred CCceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 12222 345555554321 11111 23335677
Q ss_pred eeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccc
Q psy8712 466 VHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522 (651)
Q Consensus 466 l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~ 522 (651)
+++|+.+.+|||+|+|++|||||+|.+.++|+||+||+||.|+.|.|++|++++|..
T Consensus 290 lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 290 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp EEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred EEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 889999999999999999999999999999999999999999999999999886544
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=317.03 Aligned_cols=214 Identities=28% Similarity=0.454 Sum_probs=193.1
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+.+|+++++++++.++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+....
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~------------ 95 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP------------ 95 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC------------
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc------------
Confidence 35799999999999999999999999999999999999999999999999999999999998775400
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 96 -------------------------------------------------------------------------------- 95 (242)
T 3fe2_A 96 -------------------------------------------------------------------------------- 95 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 96 -------------------------------------------------------------------------------- 95 (242)
T 3fe2_A 96 -------------------------------------------------------------------------------- 95 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
......++++|||+||++|+.|+++.++.+....+ +++..
T Consensus 96 -------------------------------------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~---~~~~~ 135 (242)
T 3fe2_A 96 -------------------------------------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACR---LKSTC 135 (242)
T ss_dssp -------------------------------------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEE
T ss_pred -------------------------------------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC---ceEEE
Confidence 00012356899999999999999999999988765 89999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.....+...+.++++|+|+||+++.+++..+.+.++++++|||||||++++++|.+.+..+++.++. +.|
T Consensus 136 ~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~------~~q 209 (242)
T 3fe2_A 136 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP------DRQ 209 (242)
T ss_dssp ECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCS------SCE
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCc------cce
Confidence 99999999998889899999999999999999988889999999999999999999999999999999976 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCC
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGED 433 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~ 433 (651)
+++||||+++ .+.++++.++++|..|.+...+
T Consensus 210 ~~~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~e 241 (242)
T 3fe2_A 210 TLMWSATWPK-EVRQLAEDFLKDYIHINIGALE 241 (242)
T ss_dssp EEEEESCCCH-HHHHHHHHHCSSCEEEEECC--
T ss_pred EEEEEeecCH-HHHHHHHHHCCCCEEEEecCCC
Confidence 9999999997 9999999999999999887653
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=359.15 Aligned_cols=234 Identities=17% Similarity=0.176 Sum_probs=164.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Cc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HL 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l 357 (651)
++++||+||++||.|+++++..+.++++ +++.+++||.+...+.. ..++||+||||++| .+++... .+
T Consensus 125 ~~vlVltptreLA~qd~e~~~~l~~~lg---l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l 199 (844)
T 1tf5_A 125 KGVHVVTVNEYLASRDAEQMGKIFEFLG---LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQM 199 (844)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHHTT---CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGC
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhh
Confidence 3699999999999999999999999886 99999999988755433 34799999999999 6665533 46
Q ss_pred ccCCcceEeeccchhhh-hcc---------------chHHHHHHHhcCCC---ccCCCCceeEE----------------
Q psy8712 358 SLTHCRFFVLDEADGLL-KQG---------------YGNLIDRMHKQIPK---ITSDGKRLQMI---------------- 402 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll-~~g---------------f~~~i~~il~~lp~---~~~~~~~~Q~l---------------- 402 (651)
.++.+.++||||||.|| +.+ |.+++..|+..++. +.-+....|++
T Consensus 200 ~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~ 279 (844)
T 1tf5_A 200 VQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGID 279 (844)
T ss_dssp CCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCS
T ss_pred cccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcc
Confidence 68999999999999998 664 77899999999973 11112257888
Q ss_pred -EEeeccCh--HHHHHH--HHHhcc-CCeEE------------------------------------EccCCCCccCceE
Q psy8712 403 -VCSATLHD--FDVKKM--AERLMY-FPTWV------------------------------------DLKGEDAVPETVH 440 (651)
Q Consensus 403 -~~SATl~~--~~v~~l--~~~~l~-~p~~i------------------------------------~~~~~~~~~~~i~ 440 (651)
+||||++. ..+... +..++. +..++ .+..+..+..+|.
T Consensus 280 ~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It 359 (844)
T 1tf5_A 280 NLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATIT 359 (844)
T ss_dssp CTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEE
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceee
Confidence 99999863 133332 222332 22111 0111110111111
Q ss_pred --------------------------------------------------------------------------EEEEEe
Q psy8712 441 --------------------------------------------------------------------------HVVVKI 446 (651)
Q Consensus 441 --------------------------------------------------------------------------~~~~~~ 446 (651)
.++++|
T Consensus 360 ~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft 439 (844)
T 1tf5_A 360 FQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGT 439 (844)
T ss_dssp HHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 123333
Q ss_pred CcchHHH--HHHH-----------------------hhccccceeeccccccCCCCCC--------CCCEEEEeCCCCCh
Q psy8712 447 DPQQDET--WGRL-----------------------RSHIQTDGVHARDNARPGIDIS--------GLPFIINMTLPDDK 493 (651)
Q Consensus 447 ~~~~~~~--~~~l-----------------------~~~~~~~~l~~td~~~rGIDip--------~v~~VIn~dlP~s~ 493 (651)
.+.+... ...| ..+....++++||.+.||+||+ ++.+|||||+|.+.
T Consensus 440 ~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~ 519 (844)
T 1tf5_A 440 VAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESR 519 (844)
T ss_dssp SCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCH
Confidence 3322111 1111 1111335567899999999999 88899999999999
Q ss_pred hhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 494 ANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 494 ~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
+.|+||+|||||+|++|.+++|++.+|...
T Consensus 520 r~y~hr~GRTGRqG~~G~s~~~vs~eD~l~ 549 (844)
T 1tf5_A 520 RIDNQLRGRSGRQGDPGITQFYLSMEDELM 549 (844)
T ss_dssp HHHHHHHTTSSGGGCCEEEEEEEETTSSGG
T ss_pred HHHHhhcCccccCCCCCeEEEEecHHHHHH
Confidence 999999999999999999999999877543
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=323.83 Aligned_cols=136 Identities=32% Similarity=0.464 Sum_probs=120.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l 362 (651)
+|++|||+|||+||.|+++.++.+..+.. .+++..++||....... ..+++|+|+||++|.+++.+ +.+.++++
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYP--ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTST--TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCC--CcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 56899999999999999999999987654 48888889887754432 45789999999999999966 67789999
Q ss_pred ceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccC
Q psy8712 363 RFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG 431 (651)
Q Consensus 363 ~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~ 431 (651)
++|||||||+|++ .+|...+..|++.++. ++|+++||||+++ .+..+++.++.+|..|.+..
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~------~~q~i~~SAT~~~-~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPR------NCQMLLFSATFED-SVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCT------TCEEEEEESCCCH-HHHHHHHHHSSSCEEEEECC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCCC------CCEEEEEeccCCH-HHHHHHHHHCCCCeEEEecC
Confidence 9999999999998 6899999999999987 6899999999997 99999999999999998764
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-37 Score=311.57 Aligned_cols=231 Identities=29% Similarity=0.508 Sum_probs=190.3
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+.+|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+..... ..
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~------~~--- 92 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDL------NQ--- 92 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-----------
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcc------cc---
Confidence 457999999999999999999999999999999999999999999999999999999999997754000 00
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 93 -------------------------------------------------------------------------------- 92 (253)
T 1wrb_A 93 -------------------------------------------------------------------------------- 92 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
+
T Consensus 93 ---------------------~---------------------------------------------------------- 93 (253)
T 1wrb_A 93 ---------------------Q---------------------------------------------------------- 93 (253)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------c----------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
......++++|||+||++|+.|+++.++.+..... +++..
T Consensus 94 -------------------------------------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~ 133 (253)
T 1wrb_A 94 -------------------------------------RYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP---LRSCV 133 (253)
T ss_dssp ----------------------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS---CCEEE
T ss_pred -------------------------------------cccccCCceEEEEECCHHHHHHHHHHHHHHhccCC---ceEEE
Confidence 00012346899999999999999999999987654 88899
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+.||.....+...+..+++|+|+||+++.+++..+.+.++++++||+||||++++++|.+++..++..+... ...+.|
T Consensus 134 ~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~--~~~~~q 211 (253)
T 1wrb_A 134 VYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP--SGINRQ 211 (253)
T ss_dssp ECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCC--CGGGCE
T ss_pred EECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCC--CCCCcE
Confidence 999999888888888899999999999999999988889999999999999999999999999999864321 112589
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEE
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHV 442 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~ 442 (651)
+++||||+++ .+.++++.++.+|..|.+.......++|+|.
T Consensus 212 ~l~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 212 TLMFSATFPK-EIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp EEEEESSCCH-HHHHHHHHHCSSCEEEEEC------------
T ss_pred EEEEEEeCCH-HHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 9999999997 9999999999999999998887777888775
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=370.71 Aligned_cols=197 Identities=15% Similarity=0.201 Sum_probs=141.8
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH---HHHHHHhccC-CcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV---KDQMSVLSSG-VDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~---~~q~~~L~~~-~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
+++|||+||++||.|+++.++.++ .. ++++..++||.+. ..+...+.++ ++|+|+||++|.+++.. +.++
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~-~~---~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~ 195 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLA-DE---KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQK 195 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTS-CT---TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTS
T ss_pred CeEEEEechHHHHHHHHHHHHHhh-CC---CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hccc
Confidence 479999999999999999999977 33 4899999999987 6677777776 99999999999988774 7788
Q ss_pred CcceEeeccchh----------hhh-ccchHH-HHHHHhcCC-----CccCCCCceeEEEEeeccChHHHH-HHHHHhcc
Q psy8712 361 HCRFFVLDEADG----------LLK-QGYGNL-IDRMHKQIP-----KITSDGKRLQMIVCSATLHDFDVK-KMAERLMY 422 (651)
Q Consensus 361 ~l~~lViDEaD~----------ll~-~gf~~~-i~~il~~lp-----~~~~~~~~~Q~l~~SATl~~~~v~-~l~~~~l~ 422 (651)
++++|||||||+ +++ +||.++ +..+++.+| ...+...+.|+++||||+.+..+. .+...++.
T Consensus 196 ~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~ 275 (1104)
T 4ddu_A 196 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 275 (1104)
T ss_dssp CCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC
T ss_pred CcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee
Confidence 999999999964 556 899888 888888766 000111268999999994332444 23333322
Q ss_pred CCeEEEccCCCCccCceEE---------------------EEEEeCcchHH--HHH--------------------HHhh
Q psy8712 423 FPTWVDLKGEDAVPETVHH---------------------VVVKIDPQQDE--TWG--------------------RLRS 459 (651)
Q Consensus 423 ~p~~i~~~~~~~~~~~i~~---------------------~~~~~~~~~~~--~~~--------------------~l~~ 459 (651)
+.+......+.++.+ .+++|++.... ... ..+.
T Consensus 276 ----i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~l~~F~ 351 (1104)
T 4ddu_A 276 ----FTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKNFEDFK 351 (1104)
T ss_dssp ----CCCCBCCCCCCCEEEEEESCCCHHHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHHHHHHH
T ss_pred ----EEeccCCCCcCCceeEEEecCHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHHHHHHH
Confidence 333333334444444 34455443311 111 1122
Q ss_pred ccccceeec----cccccCCCCCCC-CCEEEEeCCCC
Q psy8712 460 HIQTDGVHA----RDNARPGIDISG-LPFIINMTLPD 491 (651)
Q Consensus 460 ~~~~~~l~~----td~~~rGIDip~-v~~VIn~dlP~ 491 (651)
..+..++++ |+.++||||+|+ |++|||||+|.
T Consensus 352 ~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 352 VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 335667889 999999999999 99999999998
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=368.49 Aligned_cols=228 Identities=18% Similarity=0.186 Sum_probs=162.1
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCe----eEEEEeCCccHHH---HHHHhccCCcEEEECchhhHHHHhCCCc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKI----RELLIIGGVNVKD---QMSVLSSGVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i----~v~~l~Gg~~~~~---q~~~L~~~~dIlV~TP~rL~~ll~~~~l 357 (651)
+++|||+||++||.|+++.++.+....+ + ++.+++||.+... +...+.+ ++|+|+||++|.+++.+
T Consensus 100 ~~~lil~PtreLa~Q~~~~l~~l~~~~~---i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~--- 172 (1054)
T 1gku_B 100 KRCYVIFPTSLLVIQAAETIRKYAEKAG---VGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE--- 172 (1054)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTC---CSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcC---CCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---
Confidence 4799999999999999999999987764 6 8999999988766 3455666 99999999999998775
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCCCcc-----CCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKIT-----SDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~-----~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~ 432 (651)
++++++|||||||+|++ +.+++..++..+.... ....+.|++++|||+++ . ..+...++.++..+.+...
T Consensus 173 -L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~-~-~~~~~~~~~~~~~i~v~~~ 247 (1054)
T 1gku_B 173 -LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATA-K-KGKKAELFRQLLNFDIGSS 247 (1054)
T ss_dssp -SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCS-C-CCTTHHHHHHHHCCCCSCC
T ss_pred -hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCC-c-hhHHHHHhhcceEEEccCc
Confidence 67999999999999998 5677888887774210 00125799999999987 4 5444444433322222222
Q ss_pred CCccCceE---------------------EEEEEeCcchHHH--HHHH-------------------hhccccceeec--
Q psy8712 433 DAVPETVH---------------------HVVVKIDPQQDET--WGRL-------------------RSHIQTDGVHA-- 468 (651)
Q Consensus 433 ~~~~~~i~---------------------~~~~~~~~~~~~~--~~~l-------------------~~~~~~~~l~~-- 468 (651)
.....++. ..+++|++..... ...+ ++.....++++
T Consensus 248 ~~~~~~i~~~~~~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~~~l~~F~~G~~~VLVaTa 327 (1054)
T 1gku_B 248 RITVRNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTA 327 (1054)
T ss_dssp EECCCCEEEEEESCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEEC
T ss_pred ccCcCCceEEEechhHHHHHHHHHhhcCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHHHHHHHHHcCCCcEEEEec
Confidence 22222222 3566666654221 1111 22334577889
Q ss_pred --cccccCCCCCCCC-CEEEEeCCC-------------------------------------------------------
Q psy8712 469 --RDNARPGIDISGL-PFIINMTLP------------------------------------------------------- 490 (651)
Q Consensus 469 --td~~~rGIDip~v-~~VIn~dlP------------------------------------------------------- 490 (651)
|+.+.+|||+|+| ++|||||+|
T Consensus 328 s~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (1054)
T 1gku_B 328 HYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKE 407 (1054)
T ss_dssp C------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTS
T ss_pred CCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999995 999999999
Q ss_pred ----------------CChhhhhhhcCccccCCCceE--EEEeeeCCccccc
Q psy8712 491 ----------------DDKANYVHRIGRVGRAERMGL--AISLVSTVPEKVW 524 (651)
Q Consensus 491 ----------------~s~~~YihRiGR~GR~g~~G~--ai~lv~~~de~~~ 524 (651)
.+..+|+||+|||||.|+.|. +++++...+...+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~ 459 (1054)
T 1gku_B 408 RPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELL 459 (1054)
T ss_dssp CCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHH
T ss_pred cccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHH
Confidence 789999999999999988874 8888877655543
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=303.33 Aligned_cols=205 Identities=34% Similarity=0.574 Sum_probs=187.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+...
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-------------- 108 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-------------- 108 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------------
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--------------
Confidence 479999999999999999999999999999999999999999999999999999999999877550
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 109 -------------------------------------------------------------------------------- 108 (249)
T 3ber_A 109 -------------------------------------------------------------------------------- 108 (249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 109 -------------------------------------------------------------------------------- 108 (249)
T 3ber_A 109 -------------------------------------------------------------------------------- 108 (249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
..++++|||+||++|+.|+++.++.+....+ +++..+
T Consensus 109 ----------------------------------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~---~~~~~~ 145 (249)
T 3ber_A 109 ----------------------------------------PQRLFALVLTPTRELAFQISEQFEALGSSIG---VQSAVI 145 (249)
T ss_dssp ----------------------------------------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGT---CCEEEE
T ss_pred ----------------------------------------CCCceEEEEeCCHHHHHHHHHHHHHHhccCC---eeEEEE
Confidence 1234799999999999999999999987665 889999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhC-CCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG-GHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~-~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.....+...+.++++|+|+||+++.+++.+ +.+.++++++|||||||++++++|...+..+++.++. +.|
T Consensus 146 ~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~------~~~ 219 (249)
T 3ber_A 146 VGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR------DRK 219 (249)
T ss_dssp CTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS------SSE
T ss_pred ECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC------CCe
Confidence 999998888888888999999999999998875 5677899999999999999999999999999999886 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
++++|||+++ .+.++++.++++|..|.+.
T Consensus 220 ~l~~SAT~~~-~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 220 TFLFSATMTK-KVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EEEEESSCCH-HHHHHHHHHCSSCEEEECC
T ss_pred EEEEeccCCH-HHHHHHHHHCCCCEEEEec
Confidence 9999999997 9999999999999888764
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=301.67 Aligned_cols=209 Identities=29% Similarity=0.481 Sum_probs=179.9
Q ss_pred ccccc-CCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 2 AAFEE-MGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 2 ~~f~~-l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
..|++ ++++|+++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+......
T Consensus 19 ~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~---------- 88 (228)
T 3iuy_A 19 CRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS---------- 88 (228)
T ss_dssp CSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------------
T ss_pred hhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch----------
Confidence 57888 8999999999999999999999999999999999999999999999999999999866431000
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 89 -------------------------------------------------------------------------------- 88 (228)
T 3iuy_A 89 -------------------------------------------------------------------------------- 88 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 89 -------------------------------------------------------------------------------- 88 (228)
T 3iuy_A 89 -------------------------------------------------------------------------------- 88 (228)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
.....++++|||+||++||.|+++.++.+.. .++++..
T Consensus 89 --------------------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~ 126 (228)
T 3iuy_A 89 --------------------------------------REQRNGPGMLVLTPTRELALHVEAECSKYSY----KGLKSIC 126 (228)
T ss_dssp ------------------------------------------CCCSEEEECSSHHHHHHHHHHHHHHCC----TTCCEEE
T ss_pred --------------------------------------hhccCCCcEEEEeCCHHHHHHHHHHHHHhcc----cCceEEE
Confidence 0012356899999999999999999999862 2488999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.....+...+.++++|+|+||+++.+++....+.++++++|||||||++++++|...+..++..++. +.|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~------~~~ 200 (228)
T 3iuy_A 127 IYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRP------DRQ 200 (228)
T ss_dssp ECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCS------SCE
T ss_pred EECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCc------CCe
Confidence 99999988888888889999999999999999998888999999999999999999999999999999876 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDL 429 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~ 429 (651)
++++|||+++ .+.+++..++++|..|.+
T Consensus 201 ~l~~SAT~~~-~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 201 TVMTSATWPD-TVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp EEEEESCCCH-HHHHHHHTTCSSCEEEEC
T ss_pred EEEEEeeCCH-HHHHHHHHHCCCCEEEeC
Confidence 9999999997 999999999999987754
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=301.56 Aligned_cols=209 Identities=33% Similarity=0.550 Sum_probs=186.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|++|+++|++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~--------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP--------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT---------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh---------------
Confidence 46999999999999999999999999999999999999999999999999999999999984421
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (219)
T 1q0u_A 69 -------------------------------------------------------------------------------- 68 (219)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 69 -------------------------------------------------------------------------------- 68 (219)
T 1q0u_A 69 -------------------------------------------------------------------------------- 68 (219)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCC-CeeEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDP-KIRELL 320 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~-~i~v~~ 320 (651)
...++++|||+||++|+.|+++.++++....... ++++..
T Consensus 69 ---------------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 109 (219)
T 1q0u_A 69 ---------------------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARC 109 (219)
T ss_dssp ---------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEE
T ss_pred ---------------------------------------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEE
Confidence 0123579999999999999999999998765211 378889
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
++||.+...+...+..+++|+|+||+++.+++.++.+.++++++|||||||++++++|...+..++..++. +.|
T Consensus 110 ~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------~~~ 183 (219)
T 1q0u_A 110 LIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK------DLQ 183 (219)
T ss_dssp ECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT------TCE
T ss_pred EeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCc------ccE
Confidence 99999888777777778999999999999999988888999999999999999999999999999999986 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccC
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKG 431 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~ 431 (651)
++++|||+++ ++.++++.++++|..+.+..
T Consensus 184 ~l~~SAT~~~-~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 184 MLVFSATIPE-KLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EEEEESCCCG-GGHHHHHHHCSSCEEEECC-
T ss_pred EEEEecCCCH-HHHHHHHHHcCCCeEEEeec
Confidence 9999999997 99999999999999887653
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=293.24 Aligned_cols=135 Identities=33% Similarity=0.509 Sum_probs=123.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++||++||++|+.|+++.++.+....+ ++++..+.|+.....+...+.++++|+|+||+++.+++.++...+++++
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 148 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMG--GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQ 148 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSS--SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCC
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcC--CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCC
Confidence 35799999999999999999999987653 4888999999998888888888999999999999999998888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEE
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i 427 (651)
+||+||||++++.+|...+..++..++. +.|++++|||+++ .+.++++.++.+|..|
T Consensus 149 ~lViDEah~~~~~~~~~~l~~i~~~~~~------~~~~l~~SAT~~~-~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 149 MIVLDEADKLLSQDFVQIMEDIILTLPK------NRQILLYSATFPL-SVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHHHSCT------TCEEEEEESCCCH-HHHHHHHHHCSSCEEE
T ss_pred EEEEEChHHhHhhCcHHHHHHHHHhCCc------cceEEEEEeeCCH-HHHHHHHHHcCCCeEe
Confidence 9999999999999999999999999986 6899999999997 9999999999999765
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=304.30 Aligned_cols=206 Identities=31% Similarity=0.511 Sum_probs=174.4
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+++|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+..
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~-------------- 94 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI-------------- 94 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh--------------
Confidence 367999999999999999999999999999999999999999999999999999999999984421
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 95 -------------------------------------------------------------------------------- 94 (237)
T 3bor_A 95 -------------------------------------------------------------------------------- 94 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 95 -------------------------------------------------------------------------------- 94 (237)
T 3bor_A 95 -------------------------------------------------------------------------------- 94 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
...++++|||+||++|+.|+++.++.+..... +++..
T Consensus 95 ----------------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~ 131 (237)
T 3bor_A 95 ----------------------------------------EFKETQALVLAPTRELAQQIQKVILALGDYMG---ATCHA 131 (237)
T ss_dssp ----------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEE
T ss_pred ----------------------------------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcC---ceEEE
Confidence 01234799999999999999999999987654 88889
Q ss_pred EeCCccHHHHHHHhccC-CcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCce
Q psy8712 321 IIGGVNVKDQMSVLSSG-VDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRL 399 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~-~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~ 399 (651)
+.||.....+...+..+ ++|+|+||+++.+++.++.+.++++++|||||||++++++|...+..+++.++. +.
T Consensus 132 ~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~------~~ 205 (237)
T 3bor_A 132 CIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT------SI 205 (237)
T ss_dssp ECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT------TC
T ss_pred EECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCC------CC
Confidence 99998887777777665 999999999999999988888999999999999999999999999999999876 68
Q ss_pred eEEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 400 QMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 400 Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
|++++|||+++ .+.++++.++++|..|.+.
T Consensus 206 ~~i~~SAT~~~-~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 206 QVVLLSATMPT-DVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEEECSSCCH-HHHHHHHHHCSSCEEEC--
T ss_pred eEEEEEEecCH-HHHHHHHHHCCCCEEEEec
Confidence 99999999997 9999999999999988765
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=298.16 Aligned_cols=205 Identities=30% Similarity=0.449 Sum_probs=182.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
+.|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+..
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~--------------- 88 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL--------------- 88 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---------------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh---------------
Confidence 46999999999999999999999999999999999999999999999999999999999974422
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 89 -------------------------------------------------------------------------------- 88 (230)
T 2oxc_A 89 -------------------------------------------------------------------------------- 88 (230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 89 -------------------------------------------------------------------------------- 88 (230)
T 2oxc_A 89 -------------------------------------------------------------------------------- 88 (230)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++++|||+||++|+.|+++.++.+..... ++++..+
T Consensus 89 ---------------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~ 127 (230)
T 2oxc_A 89 ---------------------------------------ENLSTQILILAPTREIAVQIHSVITAIGIKME--GLECHVF 127 (230)
T ss_dssp ---------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTST--TCCEEEE
T ss_pred ---------------------------------------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccC--CceEEEE
Confidence 01235799999999999999999999986542 4888999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhcc-chHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG-YGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~g-f~~~i~~il~~lp~~~~~~~~~Q 400 (651)
.||.....+...+. +++|+|+||+++.+++..+.+.++++++||+||||++++++ |.+.+..+++.++. +.|
T Consensus 128 ~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~------~~~ 200 (230)
T 2oxc_A 128 IGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA------SKQ 200 (230)
T ss_dssp CTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS------SCE
T ss_pred eCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC------CCe
Confidence 99998877766654 69999999999999999888889999999999999999987 99999999999986 589
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
++++|||+++ .+.+++..++.+|..|.+.
T Consensus 201 ~l~lSAT~~~-~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 201 MLAVSATYPE-FLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp EEEEESCCCH-HHHHHHTTTCSSCEEECC-
T ss_pred EEEEEeccCH-HHHHHHHHHcCCCeEEEcC
Confidence 9999999997 8999999999999888653
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=294.01 Aligned_cols=209 Identities=33% Similarity=0.486 Sum_probs=183.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
+.|+++++++.+.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+.+..
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~------------- 91 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ------------- 91 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTT-------------
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc-------------
Confidence 5799999999999999999999999999999999999999999999999999999999999876510
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 92 -------------------------------------------------------------------------------- 91 (236)
T 2pl3_A 92 -------------------------------------------------------------------------------- 91 (236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 92 -------------------------------------------------------------------------------- 91 (236)
T 2pl3_A 92 -------------------------------------------------------------------------------- 91 (236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
.....++++||++||++|+.|+++.++.+....+ +++..+
T Consensus 92 -------------------------------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~ 131 (236)
T 2pl3_A 92 -------------------------------------WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD---FSAGLI 131 (236)
T ss_dssp -------------------------------------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS---CCEEEE
T ss_pred -------------------------------------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC---eeEEEE
Confidence 0001245899999999999999999999987654 888999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+||.....+...+ .+++|+|+||+++.+++... .+.++++++||+||||++++++|...+..++..++. +.|
T Consensus 132 ~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~------~~~ 204 (236)
T 2pl3_A 132 IGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK------KRQ 204 (236)
T ss_dssp CCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT------TSE
T ss_pred ECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC------CCe
Confidence 9998877766665 47899999999999988764 567889999999999999999999999999999986 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEccC
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDLKG 431 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~ 431 (651)
++++|||+++ .+.++++.++.+|..|.+..
T Consensus 205 ~l~~SAT~~~-~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 205 TLLFSATQTK-SVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp EEEEESSCCH-HHHHHHHHSCSSCEEEECCC
T ss_pred EEEEEeeCCH-HHHHHHHHhCCCCEEEEeCC
Confidence 9999999997 89999999999999887753
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=288.70 Aligned_cols=135 Identities=33% Similarity=0.520 Sum_probs=122.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++||++||++|+.|+++.++.+... +++..+.||.....+...+.++++|+|+||+++.+++..+.+.+++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPH-----LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTT-----SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhc-----ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 468999999999999999999988753 678889999988888878888999999999999999998888899999
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
+||+||||++++++|...+..++..++. +.|++++|||+++ .+.++++.++.+|..|.+.
T Consensus 147 ~iViDEah~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 147 VAVLDEADEMLSMGFEEEVEALLSATPP------SRQTLLFSATLPS-WAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHTSCT------TSEEEEECSSCCH-HHHHHHHHHCSSCEEEECC
T ss_pred EEEEEChhHhhccchHHHHHHHHHhCCc------cCeEEEEEEecCH-HHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999999999998876 6899999999997 8999999999999888754
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=293.36 Aligned_cols=207 Identities=31% Similarity=0.504 Sum_probs=175.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|++++++.++|.++||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+..
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~--------------- 78 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--------------- 78 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc---------------
Confidence 57999999999999999999999999999999999999999999999999999999999984422
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 79 -------------------------------------------------------------------------------- 78 (224)
T 1qde_A 79 -------------------------------------------------------------------------------- 78 (224)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 79 -------------------------------------------------------------------------------- 78 (224)
T 1qde_A 79 -------------------------------------------------------------------------------- 78 (224)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...++++||++||++|+.|+++.++.+....+ +++..+
T Consensus 79 ---------------------------------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~ 116 (224)
T 1qde_A 79 ---------------------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMD---IKVHAC 116 (224)
T ss_dssp ---------------------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEE
T ss_pred ---------------------------------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccC---ceEEEE
Confidence 01235799999999999999999999887654 888999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
.||.....+...+.+ ++|+|+||+++.+++.++.+.++++++||+||||++++++|...+..++..++. +.|+
T Consensus 117 ~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~------~~~~ 189 (224)
T 1qde_A 117 IGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------TTQV 189 (224)
T ss_dssp CC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT------TCEE
T ss_pred eCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc------cCeE
Confidence 999887777666655 999999999999999988888999999999999999999999999999999876 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEccCCC
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLKGED 433 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~ 433 (651)
+++|||+++ .+.++++.++.+|..|.+...+
T Consensus 190 i~lSAT~~~-~~~~~~~~~~~~p~~i~~~~~~ 220 (224)
T 1qde_A 190 VLLSATMPN-DVLEVTTKFMRNPVRILVKKDE 220 (224)
T ss_dssp EEEESSCCH-HHHHHHHHHCSSCEEEC-----
T ss_pred EEEEeecCH-HHHHHHHHHCCCCEEEEecCCc
Confidence 999999997 9999999999999988876554
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=341.36 Aligned_cols=102 Identities=13% Similarity=0.199 Sum_probs=75.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Cc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HL 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l 357 (651)
++++||+||++||.|+++++..+.++++ +++.+++||.+... +.+..++||+||||++| .|+++.+ .+
T Consensus 116 ~~vlVltPTreLA~Q~~e~~~~l~~~lg---l~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~ 190 (853)
T 2fsf_A 116 KGVHVVTVNDYLAQRDAENNRPLFEFLG---LTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEER 190 (853)
T ss_dssp SCCEEEESSHHHHHHHHHHHHHHHHHTT---CCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGC
T ss_pred CcEEEEcCCHHHHHHHHHHHHHHHHhcC---CeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHh
Confidence 3689999999999999999999999886 99999999988643 33445799999999999 7888755 36
Q ss_pred ccCCcceEeeccchhhh-hcc---------------chHHHHHHHhcCCC
Q psy8712 358 SLTHCRFFVLDEADGLL-KQG---------------YGNLIDRMHKQIPK 391 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll-~~g---------------f~~~i~~il~~lp~ 391 (651)
.+++++++||||||.|| +.+ |..++..|+..++.
T Consensus 191 ~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 191 VQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp CCCSCCEEEESCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred cccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 67999999999999999 543 66788899988874
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=298.45 Aligned_cols=131 Identities=30% Similarity=0.465 Sum_probs=118.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCC-CcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGG-HLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~-~l~l~~l 362 (651)
++++|||+||++||.|+++.++++..... +++..++||.....+...+..+++|+|+||+++.+++... .+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l 202 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHV---HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNL 202 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCC---SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcC---ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccC
Confidence 45799999999999999999999987654 8889999999998888888889999999999999988764 4778999
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCC
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFP 424 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p 424 (651)
++|||||||++++++|.+.+..+++.++. ++|+++||||+++ .+.++++.+++++
T Consensus 203 ~~lViDEah~l~~~~~~~~l~~i~~~~~~------~~q~l~~SAT~~~-~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 203 QCLVIDEADRILDVGFEEELKQIIKLLPT------RRQTMLFSATQTR-KVEDLARISLKKE 257 (262)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHHSCS------SSEEEEECSSCCH-HHHHHHHHHCSSC
T ss_pred CEEEEcChHHHhhhhHHHHHHHHHHhCCC------CCeEEEEEecCCH-HHHHHHHHHcCCC
Confidence 99999999999999999999999999987 6899999999997 9999999888754
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=338.39 Aligned_cols=120 Identities=19% Similarity=0.183 Sum_probs=93.4
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCcc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHCR 363 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l~ 363 (651)
+++|||+||++|+.|+.+.++++....+ +++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+++++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~---~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~ 138 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHG---YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 138 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCC---ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCccccccccc
Confidence 3799999999999999999999986543 899999999887777777777899999999999999998877 789999
Q ss_pred eEeeccchhhhhccchH-HHHHHHhc-CCCccCCCCceeEEEEeeccC
Q psy8712 364 FFVLDEADGLLKQGYGN-LIDRMHKQ-IPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~-~i~~il~~-lp~~~~~~~~~Q~l~~SATl~ 409 (651)
+|||||||++.+..... .+...+.. +... .....|++++|||+.
T Consensus 139 ~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~--~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 139 LMIFDECHNTSKQHPYNMIMFNYLDQKLGGS--SGPLPQVIGLTASVG 184 (696)
T ss_dssp EEEEETGGGCSTTCHHHHHHHHHHHHHHTTC--CSCCCEEEEEESCCC
T ss_pred EEEEeCCCcccCcccHHHHHHHHHHHhhccc--CCCCCeEEEEeCccc
Confidence 99999999988654222 22222221 1110 012589999999986
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=340.12 Aligned_cols=220 Identities=19% Similarity=0.264 Sum_probs=164.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++||++|+++||.|+++.++++... ++++..++|+....... ...++|+|+||+++..++.+....++++++|
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l~~~----g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~v 142 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDWEKI----GLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKIL 142 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGGGGG----TCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHhc----CCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEE
Confidence 7999999999999999999766543 38889999977654331 2368999999999999888876668899999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC-------CeEEE----------
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF-------PTWVD---------- 428 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-------p~~i~---------- 428 (651)
||||||++.++++...+..++.+++. +.|++++|||+++ ..++.+++... |..+.
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~------~~~ii~lSATl~n--~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~ 214 (720)
T 2zj8_A 143 VADEIHLIGSRDRGATLEVILAHMLG------KAQIIGLSATIGN--PEELAEWLNAELIVSDWRPVKLRRGVFYQGFVT 214 (720)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHHBT------TBEEEEEECCCSC--HHHHHHHTTEEEEECCCCSSEEEEEEEETTEEE
T ss_pred EEECCcccCCCcccHHHHHHHHHhhc------CCeEEEEcCCcCC--HHHHHHHhCCcccCCCCCCCcceEEEEeCCeee
Confidence 99999999988899999999988874 5899999999973 56666655321 21111
Q ss_pred ccC-----CCCcc-------CceEEEEEEeCcchHHHH--HH--------------------------------------
Q psy8712 429 LKG-----EDAVP-------ETVHHVVVKIDPQQDETW--GR-------------------------------------- 456 (651)
Q Consensus 429 ~~~-----~~~~~-------~~i~~~~~~~~~~~~~~~--~~-------------------------------------- 456 (651)
... ..... ..-.+.+++|++++.... ..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~ 294 (720)
T 2zj8_A 215 WEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIR 294 (720)
T ss_dssp ETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHT
T ss_pred ccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 000 00000 011456777776542110 00
Q ss_pred --------------------HhhccccceeeccccccCCCCCCCCCEEEE----eC----CCCChhhhhhhcCccccCC-
Q psy8712 457 --------------------LRSHIQTDGVHARDNARPGIDISGLPFIIN----MT----LPDDKANYVHRIGRVGRAE- 507 (651)
Q Consensus 457 --------------------l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d----lP~s~~~YihRiGR~GR~g- 507 (651)
.+......++++|+.+++|||+|++++||+ || .|.+..+|+||+|||||.|
T Consensus 295 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 295 GGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 012234566778999999999999999999 87 6899999999999999998
Q ss_pred -CceEEEEeeeCCc
Q psy8712 508 -RMGLAISLVSTVP 520 (651)
Q Consensus 508 -~~G~ai~lv~~~d 520 (651)
..|.|+.++++.+
T Consensus 375 ~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 375 DEVGEGIIVSTSDD 388 (720)
T ss_dssp CSEEEEEEECSSSC
T ss_pred CCCceEEEEecCcc
Confidence 5899999998765
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=287.79 Aligned_cols=137 Identities=28% Similarity=0.492 Sum_probs=120.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhcc-CCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
.+++||++||++|+.|+++.++++....+ ++++..+.||.+...+...+.+ .++|+|+||+++.+++..+.+.++++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMP--NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTST--TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCC--CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 35799999999999999999999987653 4888999999988777776665 57999999999999999888889999
Q ss_pred ceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEc
Q psy8712 363 RFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDL 429 (651)
Q Consensus 363 ~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~ 429 (651)
+++|+||||++++ .+|...+..+++.++. +.|++++|||+++ .+.++++.++.+|..|.+
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPH------EKQVMMFSATLSK-EIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCS------SSEEEEEESCCCT-TTHHHHHTTCSSCEEEEC
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCC------cCeEEEEEeecCH-HHHHHHHHHcCCCeEEeC
Confidence 9999999999997 5888899999988876 6899999999997 899999999999987753
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=328.21 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=97.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l 362 (651)
++++|||+||++|+.|+++.++++....+ +++..+.|+.....+...+..+++|+|+||++|.+++..+.+ .+.++
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 128 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLG---YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVF 128 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT---CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCC---cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccC
Confidence 34799999999999999999999987664 899999999988777777777899999999999999998877 78999
Q ss_pred ceEeeccchhhhhccchHH-HHHHHhc-CCCccCCCCceeEEEEeeccCh
Q psy8712 363 RFFVLDEADGLLKQGYGNL-IDRMHKQ-IPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~-i~~il~~-lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
++|||||||++.+.+.... +...+.. +.. ......|++++|||++.
T Consensus 129 ~~vViDEah~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 129 TLMIFDECHNTSKNHPYNQIMFRYLDHKLGE--SRDPLPQVVGLTASVGV 176 (555)
T ss_dssp SEEEETTGGGCSTTCHHHHHHHHHHHHHTSS--CCSCCCEEEEEESCCCC
T ss_pred CEEEEECccccCCcchHHHHHHHHHHhhhcc--ccCCCCeEEEEecCccc
Confidence 9999999999988653332 3233332 211 11225899999999953
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=352.81 Aligned_cols=217 Identities=15% Similarity=0.238 Sum_probs=160.3
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.++||++||++||.|+++.+..+.. .+.++.|+... ..+++|+|+||++|.+++.++...++++++
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l~~~~~-------~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYRELLAEFG-------DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTS-------SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHhC-------CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 3799999999999999999998764 45678888763 346899999999999999988888899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh-HHHHHHHHHhccCCeEEEccCCCCcc-------
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD-FDVKKMAERLMYFPTWVDLKGEDAVP------- 436 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~-~~v~~l~~~~l~~p~~i~~~~~~~~~------- 436 (651)
|||||||++.+++|...+..++..++. ++|++++|||+++ .++..+...+...|..+........+
T Consensus 294 VVIDEaH~l~d~~rg~~~e~ii~~l~~------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~ 367 (1108)
T 3l9o_A 294 VIFDEVHYMRDKERGVVWEETIILLPD------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFP 367 (1108)
T ss_dssp EEEETGGGTTSHHHHHHHHHHHHHSCT------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEE
T ss_pred EEEhhhhhccccchHHHHHHHHHhcCC------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEee
Confidence 999999999999999999999999987 6999999999975 12344555555454433221111000
Q ss_pred -----------------------------------------------------------------------CceEEEEEE
Q psy8712 437 -----------------------------------------------------------------------ETVHHVVVK 445 (651)
Q Consensus 437 -----------------------------------------------------------------------~~i~~~~~~ 445 (651)
......+++
T Consensus 368 ~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF 447 (1108)
T 3l9o_A 368 AHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVF 447 (1108)
T ss_dssp TTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEE
Confidence 001135566
Q ss_pred eCcchHHHH------------------------------------------------------------------HHHhh
Q psy8712 446 IDPQQDETW------------------------------------------------------------------GRLRS 459 (651)
Q Consensus 446 ~~~~~~~~~------------------------------------------------------------------~~l~~ 459 (651)
|.+...... ...+.
T Consensus 448 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~ 527 (1108)
T 3l9o_A 448 SFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQ 527 (1108)
T ss_dssp ESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHh
Confidence 655431110 00122
Q ss_pred ccccceeeccccccCCCCCCCCCEEEEeCCC--------CChhhhhhhcCccccCC--CceEEEEeeeCCcc
Q psy8712 460 HIQTDGVHARDNARPGIDISGLPFIINMTLP--------DDKANYVHRIGRVGRAE--RMGLAISLVSTVPE 521 (651)
Q Consensus 460 ~~~~~~l~~td~~~rGIDip~v~~VIn~dlP--------~s~~~YihRiGR~GR~g--~~G~ai~lv~~~de 521 (651)
.....++++|+.+++|||+|++++||+++.| .++.+|+||+|||||.| ..|.|++++.+..+
T Consensus 528 ~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~ 599 (1108)
T 3l9o_A 528 EGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKME 599 (1108)
T ss_dssp HTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCC
T ss_pred CCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcC
Confidence 2345678899999999999999999987764 36677999999999999 78999999987643
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=323.51 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=92.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l 362 (651)
++++|||+||++|+.|+.+.++.+....+ +++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 131 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIF 131 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT---CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC---ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccC
Confidence 45799999999999999999999987664 899999999988777777777899999999999999998888 79999
Q ss_pred ceEeeccchhhhhccchHHHH-HHHhc-CCCccCCCCceeEEEEeeccC
Q psy8712 363 RFFVLDEADGLLKQGYGNLID-RMHKQ-IPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~-~il~~-lp~~~~~~~~~Q~l~~SATl~ 409 (651)
++|||||||++.++++...+. ..+.. +.. .....|++++|||++
T Consensus 132 ~~vViDEah~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 132 TLMIFDECHNTTGNHPYNVLMTRYLEQKFNS---ASQLPQILGLTASVG 177 (556)
T ss_dssp SEEEEETGGGCSTTSHHHHHHHHHHHHHHCC------CCEEEEEESCCC
T ss_pred CEEEEECCcccCCcchHHHHHHHHHHhhhcc---cCCCCeEEEEeCCcc
Confidence 999999999999876544432 22222 111 112589999999984
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=335.55 Aligned_cols=220 Identities=20% Similarity=0.280 Sum_probs=157.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
+++|++|+++||.|+++.++.+... ++++..++|+...... .+ ..++|+|+||+++..++.+....++++++|
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~~----g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~v 149 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWELI----GFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYF 149 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGGG----TCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhcC----CCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEE
Confidence 7999999999999999999655542 3788888888665433 12 368999999999999988877678999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC---------CeEEEc--cC---
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF---------PTWVDL--KG--- 431 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~---------p~~i~~--~~--- 431 (651)
||||||.+.+..+...++.++.+++. .|++++|||+++ ..++++++... |....+ ..
T Consensus 150 IiDE~H~l~~~~~~~~l~~i~~~~~~-------~~ii~lSATl~n--~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~ 220 (715)
T 2va8_A 150 VLDELHYLNDPERGPVVESVTIRAKR-------RNLLALSATISN--YKQIAKWLGAEPVATNWRPVPLIEGVIYPERKK 220 (715)
T ss_dssp EECSGGGGGCTTTHHHHHHHHHHHHT-------SEEEEEESCCTT--HHHHHHHHTCEEEECCCCSSCEEEEEEEECSST
T ss_pred EEechhhcCCcccchHHHHHHHhccc-------CcEEEEcCCCCC--HHHHHHHhCCCccCCCCCCCCceEEEEecCCcc
Confidence 99999999887888889988888763 799999999973 46666655321 111110 00
Q ss_pred -------C----------CCc-------cCceEEEEEEeCcchHHH--HHHH----------------------------
Q psy8712 432 -------E----------DAV-------PETVHHVVVKIDPQQDET--WGRL---------------------------- 457 (651)
Q Consensus 432 -------~----------~~~-------~~~i~~~~~~~~~~~~~~--~~~l---------------------------- 457 (651)
. ... ...-.+.+++++..+... ...+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 300 (715)
T 2va8_A 221 KEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGG 300 (715)
T ss_dssp TEEEEEETTSCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSC
T ss_pred cceeeecCcchhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcc
Confidence 0 000 001134667776543211 0111
Q ss_pred ---------------------------------hhccccceeeccccccCCCCCCCCCEEEE----eC-------CCCCh
Q psy8712 458 ---------------------------------RSHIQTDGVHARDNARPGIDISGLPFIIN----MT-------LPDDK 493 (651)
Q Consensus 458 ---------------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d-------lP~s~ 493 (651)
+......++.+|+.+++|||+|++++||+ || .|.+.
T Consensus 301 ~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~ 380 (715)
T 2va8_A 301 SDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPI 380 (715)
T ss_dssp HHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CH
T ss_pred ccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCH
Confidence 12234556778999999999999999999 99 89999
Q ss_pred hhhhhhcCccccCC--CceEEEEeeeCCcc
Q psy8712 494 ANYVHRIGRVGRAE--RMGLAISLVSTVPE 521 (651)
Q Consensus 494 ~~YihRiGR~GR~g--~~G~ai~lv~~~de 521 (651)
.+|+||+|||||.| ..|.|+.++++.++
T Consensus 381 ~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 381 MEYKQMSGRAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp HHHHHHHTTBCCTTTCSCEEEEEECSCGGG
T ss_pred HHHHHHhhhcCCCCCCCCceEEEEeCCchH
Confidence 99999999999988 48999999987653
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.55 Aligned_cols=120 Identities=16% Similarity=0.233 Sum_probs=98.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCC------Ccc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGG------HLS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~------~l~ 358 (651)
+++||+||++||.|+++++..+.++++ +++.+++||.+...+. +..++||+||||++| .|+++.+ .+.
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~lG---Lsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~ 228 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFLG---LQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLV 228 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTT---CCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcC---CeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhc
Confidence 689999999999999999999999986 9999999998865443 334699999999999 7877654 466
Q ss_pred cCCcceEeeccchhhh-h---------------ccchHHHHHHHhcCCCc---cCCCCceeEE-----------------
Q psy8712 359 LTHCRFFVLDEADGLL-K---------------QGYGNLIDRMHKQIPKI---TSDGKRLQMI----------------- 402 (651)
Q Consensus 359 l~~l~~lViDEaD~ll-~---------------~gf~~~i~~il~~lp~~---~~~~~~~Q~l----------------- 402 (651)
++.+.++||||||.|| + ++|..++..|+..++.. .-+..+.|++
T Consensus 229 lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~ 308 (922)
T 1nkt_A 229 QRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDN 308 (922)
T ss_dssp CCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSS
T ss_pred cCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCcc
Confidence 8899999999999999 4 35888999999999720 0011267998
Q ss_pred EEeeccCh
Q psy8712 403 VCSATLHD 410 (651)
Q Consensus 403 ~~SATl~~ 410 (651)
+||||++.
T Consensus 309 Lfsat~~~ 316 (922)
T 1nkt_A 309 LYEAANSP 316 (922)
T ss_dssp TTCSTTCC
T ss_pred ccCCcchh
Confidence 99999864
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=290.79 Aligned_cols=140 Identities=24% Similarity=0.341 Sum_probs=115.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH-HHhccCCcEEEECchhhHHHHhCC--CcccC
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM-SVLSSGVDIVVGTPGRMEDLISGG--HLSLT 360 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~-~~L~~~~dIlV~TP~rL~~ll~~~--~l~l~ 360 (651)
++++|||+||++|+.|+++.++++....+ +++..+.|+....... .....+++|+|+||+++.+++... .+.++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTG---FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccC---ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 45899999999999999999999987654 7777777765543332 233457899999999999999876 57789
Q ss_pred CcceEeeccchhhhh---ccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC
Q psy8712 361 HCRFFVLDEADGLLK---QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE 432 (651)
Q Consensus 361 ~l~~lViDEaD~ll~---~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~ 432 (651)
++++|||||||++++ .+|...+..++..+... +.|+++||||+++ ++.++++.++++|..+.+...
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~SAT~~~-~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSH-----KVRRAMFSATFAY-DVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCT-----TCEEEEEESSCCH-HHHHHHHHHSSSCEEEEECC-
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCC-----CcEEEEEeccCCH-HHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999998 47888899888776542 5899999999997 999999999999999988764
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=337.09 Aligned_cols=223 Identities=21% Similarity=0.252 Sum_probs=162.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++||++|+++||.|+++.++.+... ++++..++|+...... . ...++|+|+||+++..++.+....++++++|
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~~----g~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~v 142 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEKI----GLRIGISTGDYESRDE--H-LGDCDIIVTTSEKADSLIRNRASWIKAVSCL 142 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTTT----TCCEEEECSSCBCCSS--C-STTCSEEEEEHHHHHHHHHTTCSGGGGCCEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHhc----CCEEEEEeCCCCcchh--h-ccCCCEEEECHHHHHHHHHcChhHHhhcCEE
Confidence 6899999999999999999655432 4888899998765432 1 2368999999999999998877668999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC---------CeEEEccCCCC--
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF---------PTWVDLKGEDA-- 434 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~---------p~~i~~~~~~~-- 434 (651)
||||||++.++++...+..++..+... ..+.|++++|||++ +..++++++... |....+.....
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~---~~~~~ii~lSATl~--n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~ 217 (702)
T 2p6r_A 143 VVDEIHLLDSEKRGATLEILVTKMRRM---NKALRVIGLSATAP--NVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLE 217 (702)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHH---CTTCEEEEEECCCT--THHHHHHHTTCEEEECCCCSSCEEEEEECSSEEE
T ss_pred EEeeeeecCCCCcccHHHHHHHHHHhc---CcCceEEEECCCcC--CHHHHHHHhCCCcccCCCCCccceEEEeeCCeee
Confidence 999999999888888888877766321 11589999999998 456777655321 11111100000
Q ss_pred cc--------------------CceEEEEEEeCcchHHH--HHH------------------------------------
Q psy8712 435 VP--------------------ETVHHVVVKIDPQQDET--WGR------------------------------------ 456 (651)
Q Consensus 435 ~~--------------------~~i~~~~~~~~~~~~~~--~~~------------------------------------ 456 (651)
.. ..-.+.+++|+..+... ...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 218 LFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp EEETTEEEEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred ccCcchhhhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 00 00134667776654211 000
Q ss_pred -------------------HhhccccceeeccccccCCCCCCCCCEEEE----eC---CCCChhhhhhhcCccccCC--C
Q psy8712 457 -------------------LRSHIQTDGVHARDNARPGIDISGLPFIIN----MT---LPDDKANYVHRIGRVGRAE--R 508 (651)
Q Consensus 457 -------------------l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d---lP~s~~~YihRiGR~GR~g--~ 508 (651)
.+......++.+|+.+++|||+|++++||+ || .|.+..+|+||+|||||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 022234567788999999999999999999 77 7899999999999999998 5
Q ss_pred ceEEEEeeeCCc
Q psy8712 509 MGLAISLVSTVP 520 (651)
Q Consensus 509 ~G~ai~lv~~~d 520 (651)
.|.|+.++++.+
T Consensus 378 ~G~~~~l~~~~~ 389 (702)
T 2p6r_A 378 RGEAIIIVGKRD 389 (702)
T ss_dssp CEEEEEECCGGG
T ss_pred CceEEEEecCcc
Confidence 899999998754
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=321.88 Aligned_cols=121 Identities=18% Similarity=0.148 Sum_probs=92.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l 362 (651)
++++|||+||++|+.|+.+.++++....+ +++..++|+.....+...+..+++|+|+||++|.+++..+.+ .++++
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~---~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 372 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIF 372 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT---CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCC---ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccC
Confidence 34799999999999999999999987654 899999999988877777778899999999999999998877 78999
Q ss_pred ceEeeccchhhhhccchHHH-HHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 363 RFFVLDEADGLLKQGYGNLI-DRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i-~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
++|||||||++.+.+....+ ..++..... ......|++++|||++
T Consensus 373 ~~iViDEaH~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 373 TLMIFDECHNTTGNHPYNVLMTRYLEQKFN--SASQLPQILGLTASVG 418 (797)
T ss_dssp SEEEETTGGGCSTTSHHHHHHHHHHHHHHT--TCCCCCEEEEEESCCC
T ss_pred CEEEEECccccCCCccHHHHHHHHHHHhhc--cCCCCCeEEEEcCCcc
Confidence 99999999999876543332 233222100 0112589999999984
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=333.07 Aligned_cols=208 Identities=14% Similarity=0.073 Sum_probs=139.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++|||+|||+||.|+++.++.+ .+. ..+.. .. ..-..+..+.+.|.+.+...+... ..++++++
T Consensus 216 ~~vLvl~PtreLa~Qi~~~l~~~---------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~ 280 (618)
T 2whx_A 216 LRTLILAPTRVVAAEMEEALRGL---------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNL 280 (618)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTS---------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSE
T ss_pred CeEEEEcChHHHHHHHHHHhcCC---------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeE
Confidence 47999999999999999887622 222 11111 00 000112345556666665444332 34789999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCC---C---cc--
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED---A---VP-- 436 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~---~---~~-- 436 (651)
|||||||++ +.+|...+..++..++.. ++|+++||||++. .+..+.. .++..+.+.... . ..
T Consensus 281 iViDEah~~-~~~~~~~~~~i~~~l~~~-----~~q~il~SAT~~~-~~~~~~~---~~~~~~~v~~~~~~~~~~~ll~~ 350 (618)
T 2whx_A 281 IVMDEAHFT-DPCSVAARGYISTRVEMG-----EAAAIFMTATPPG-STDPFPQ---SNSPIEDIEREIPERSWNTGFDW 350 (618)
T ss_dssp EEEESTTCC-SHHHHHHHHHHHHHHHHT-----SCEEEEECSSCTT-CCCSSCC---CSSCEEEEECCCCSSCCSSSCHH
T ss_pred EEEECCCCC-CccHHHHHHHHHHHhccc-----CccEEEEECCCch-hhhhhhc---cCCceeeecccCCHHHHHHHHHH
Confidence 999999998 667888888888776421 5899999999986 4443322 244444443211 0 00
Q ss_pred --CceEEEEEEeCcchHHH--HHHH---------------------hhccccceeeccccccCCCCCCCCCEE-------
Q psy8712 437 --ETVHHVVVKIDPQQDET--WGRL---------------------RSHIQTDGVHARDNARPGIDISGLPFI------- 484 (651)
Q Consensus 437 --~~i~~~~~~~~~~~~~~--~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~V------- 484 (651)
+.-.+.+++|++.+... ...+ ++..+..++++||.+++|||+| +++|
T Consensus 351 l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~ 429 (618)
T 2whx_A 351 ITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCL 429 (618)
T ss_dssp HHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEE
T ss_pred HHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECccee
Confidence 01135778888765322 1112 2233567888999999999997 9988
Q ss_pred -------------EEeCCCCChhhhhhhcCccccCCC-ceEEEEeeeC
Q psy8712 485 -------------INMTLPDDKANYVHRIGRVGRAER-MGLAISLVST 518 (651)
Q Consensus 485 -------------In~dlP~s~~~YihRiGR~GR~g~-~G~ai~lv~~ 518 (651)
||||+|.+.++|+||+|||||+|. .|.|++|++.
T Consensus 430 ~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 430 KPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 888889999999999999999964 9999999973
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-32 Score=315.37 Aligned_cols=214 Identities=19% Similarity=0.162 Sum_probs=142.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
.+++||+||++||.|+++.++++...++ +++..++|+.....+. ..+.+ .++|+|+||+.+.+ .+.++
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~g---i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~ 489 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFN---IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFK 489 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSS---CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCS
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcC---ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhcc
Confidence 3799999999999999999999886654 8999999998876543 34444 49999999988754 45688
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccC------------CeEEE
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYF------------PTWVD 428 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~------------p~~i~ 428 (651)
+++++||||+|++.. . ....+... +.++|++++|||+.+ ....+......+ |....
T Consensus 490 ~l~lVVIDEaHr~g~---~--qr~~l~~~------~~~~~vL~mSATp~p-~tl~~~~~g~~~~s~i~~~p~~r~~i~~~ 557 (780)
T 1gm5_A 490 NLGLVIIDEQHRFGV---K--QREALMNK------GKMVDTLVMSATPIP-RSMALAFYGDLDVTVIDEMPPGRKEVQTM 557 (780)
T ss_dssp CCCEEEEESCCCC----------CCCCSS------SSCCCEEEEESSCCC-HHHHHHHTCCSSCEEECCCCSSCCCCEEC
T ss_pred CCceEEecccchhhH---H--HHHHHHHh------CCCCCEEEEeCCCCH-HHHHHHHhCCcceeeeeccCCCCcceEEE
Confidence 999999999998632 1 11111111 225899999999876 443333211111 11111
Q ss_pred ccCCCCc----------cCceEEEEEEeCcch----------HHHHHHH----------------------------hhc
Q psy8712 429 LKGEDAV----------PETVHHVVVKIDPQQ----------DETWGRL----------------------------RSH 460 (651)
Q Consensus 429 ~~~~~~~----------~~~i~~~~~~~~~~~----------~~~~~~l----------------------------~~~ 460 (651)
+...... ...-.+.+++|+..+ ......+ +..
T Consensus 558 ~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~ 637 (780)
T 1gm5_A 558 LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE 637 (780)
T ss_dssp CCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT
T ss_pred EeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 1111000 001123344443211 1111111 223
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
.+.+++++|+.+.+|||+|++++||++|.|. +...|.||+||+||.|+.|.|++++.+
T Consensus 638 G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 638 GRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp TSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 3456777899999999999999999999997 678888999999999999999999874
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=320.89 Aligned_cols=213 Identities=15% Similarity=0.229 Sum_probs=161.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.++||++||++|+.|+++.++.+.. ++..++|+.... ..++|+|+||++|.+++.++...++++++
T Consensus 130 ~rvL~l~PtkaLa~Q~~~~l~~~~~-------~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~l 195 (1010)
T 2xgj_A 130 QRVIYTSPIKALSNQKYRELLAEFG-------DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAW 195 (1010)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHS-------CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEE
T ss_pred CeEEEECChHHHHHHHHHHHHHHhC-------CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCE
Confidence 3799999999999999999998763 466788887643 35899999999999998888788899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh---ccCCeEEEccCCCCcc-----
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL---MYFPTWVDLKGEDAVP----- 436 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~---l~~p~~i~~~~~~~~~----- 436 (651)
|||||||++.+++++..+..++..++. +.|++++|||+++ ..+++.++ ...+..+........+
T Consensus 196 VViDEaH~l~d~~rg~~~e~il~~l~~------~~~il~LSATi~n--~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~ 267 (1010)
T 2xgj_A 196 VIFDEVHYMRDKERGVVWEETIILLPD------KVRYVFLSATIPN--AMEFAEWICKIHSQPCHIVYTNFRPTPLQHYL 267 (1010)
T ss_dssp EEEETGGGGGCTTTHHHHHHHHHHSCT------TCEEEEEECCCTT--HHHHHHHHHHHHTSCEEEEEECCCSSCEEEEE
T ss_pred EEEechhhhcccchhHHHHHHHHhcCC------CCeEEEEcCCCCC--HHHHHHHHHhhcCCCeEEEecCCCcccceEEE
Confidence 999999999999888889999999886 6899999999974 34444443 2333322211100000
Q ss_pred -------------------------------------------------------------C------------ceEEEE
Q psy8712 437 -------------------------------------------------------------E------------TVHHVV 443 (651)
Q Consensus 437 -------------------------------------------------------------~------------~i~~~~ 443 (651)
. .....+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~I 347 (1010)
T 2xgj_A 268 FPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVI 347 (1010)
T ss_dssp EETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEE
T ss_pred EecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEE
Confidence 0 011355
Q ss_pred EEeCcchHHHH------------------------------------------------------------------HHH
Q psy8712 444 VKIDPQQDETW------------------------------------------------------------------GRL 457 (651)
Q Consensus 444 ~~~~~~~~~~~------------------------------------------------------------------~~l 457 (651)
+++.+...... ...
T Consensus 348 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~ 427 (1010)
T 2xgj_A 348 VFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEIL 427 (1010)
T ss_dssp EEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHH
Confidence 66655431110 011
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEE----eCC----CCChhhhhhhcCccccCCC--ceEEEEeeeCC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIIN----MTL----PDDKANYVHRIGRVGRAER--MGLAISLVSTV 519 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn----~dl----P~s~~~YihRiGR~GR~g~--~G~ai~lv~~~ 519 (651)
+......++++|+.+++|||+|++++||+ ||. |.++.+|+||+|||||.|. .|.||+|+++.
T Consensus 428 F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 428 FQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 22334567889999999999999999999 999 8999999999999999996 59999999875
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-32 Score=300.08 Aligned_cols=207 Identities=14% Similarity=0.071 Sum_probs=138.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++||++|||+||.|+++.+..+ .+....+.... ....+..|.++||+.+.+.+.+. ..++++++
T Consensus 49 ~~~lvl~Ptr~La~Q~~~~l~g~---------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~ 113 (451)
T 2jlq_A 49 LRTLILAPTRVVAAEMEEALRGL---------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNL 113 (451)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTS---------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSE
T ss_pred CcEEEECCCHHHHHHHHHHhcCc---------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCE
Confidence 47999999999999999987522 22211111110 11235679999999998776544 45789999
Q ss_pred EeeccchhhhhccchHHHHHHHhcC-CCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCC---c-----
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQI-PKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDA---V----- 435 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~l-p~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~---~----- 435 (651)
|||||||++ +..+...+..+.... +. +.|++++|||+++ .+.. .+..++..+.+..... .
T Consensus 114 iViDEah~~-~~~~~~~~~~~~~~~~~~------~~~~i~~SAT~~~-~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~ 182 (451)
T 2jlq_A 114 IVMDEAHFT-DPCSVAARGYISTRVEMG------EAAAIFMTATPPG-STDP---FPQSNSPIEDIEREIPERSWNTGFD 182 (451)
T ss_dssp EEEETTTCC-SHHHHHHHHHHHHHHHTT------SCEEEEECSSCTT-CCCS---SCCCSSCEEEEECCCCSSCCSSSCH
T ss_pred EEEeCCccC-CcchHHHHHHHHHhhcCC------CceEEEEccCCCc-cchh---hhcCCCceEecCccCCchhhHHHHH
Confidence 999999987 433333333332221 22 5899999999986 3332 2334444443321100 0
Q ss_pred --cCceEEEEEEeCcchHHH--HHHH---------------------hhccccceeeccccccCCCCCCCCCEEEEeC--
Q psy8712 436 --PETVHHVVVKIDPQQDET--WGRL---------------------RSHIQTDGVHARDNARPGIDISGLPFIINMT-- 488 (651)
Q Consensus 436 --~~~i~~~~~~~~~~~~~~--~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~d-- 488 (651)
.+.-.+.+++|++.+... ...+ +...+..++++|+.+++|||+|+ ++|||||
T Consensus 183 ~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~ 261 (451)
T 2jlq_A 183 WITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRC 261 (451)
T ss_dssp HHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEE
T ss_pred HHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCc
Confidence 001135788888765322 2222 23345677889999999999999 9999999
Q ss_pred ------------------CCCChhhhhhhcCccccCCC-ceEEEEeeeC
Q psy8712 489 ------------------LPDDKANYVHRIGRVGRAER-MGLAISLVST 518 (651)
Q Consensus 489 ------------------lP~s~~~YihRiGR~GR~g~-~G~ai~lv~~ 518 (651)
.|.+.++|+||+|||||.|+ .|.+++|...
T Consensus 262 ~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 262 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-31 Score=317.08 Aligned_cols=121 Identities=18% Similarity=0.147 Sum_probs=91.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc-ccCCc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL-SLTHC 362 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l-~l~~l 362 (651)
++++|||+||++|+.|+++.++++....+ +++..++|+.....+...+..+++|+|+||++|.+++..+.+ .++++
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~---~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~ 372 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG---YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIF 372 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT---CCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC---ceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCC
Confidence 34799999999999999999999987654 899999999987776666767899999999999999998877 78999
Q ss_pred ceEeeccchhhhhccchHH-HHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 363 RFFVLDEADGLLKQGYGNL-IDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~-i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
++|||||||++...+.... +..++..... ......|++++|||+.
T Consensus 373 ~liViDEaH~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 373 TLMIFDECHNTTGNHPYNVLMTRYLEQKFN--SASQLPQILGLTASVG 418 (936)
T ss_dssp SEEEEETGGGCSTTCHHHHHHHHHHHHHHT--TCSCCCEEEEEESCCC
T ss_pred CEEEEECccccCCCccHHHHHHHHHHHhhc--cCCCcCeEEEecCCcc
Confidence 9999999999987643322 2233322100 0112589999999984
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=326.20 Aligned_cols=227 Identities=17% Similarity=0.222 Sum_probs=156.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHH-hhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC--cccCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIK-FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH--LSLTHC 362 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~-l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~--l~l~~l 362 (651)
++|+|+|||+||.|+++.++. |+..++ +++..++|+...+... ..+++|+|+|||++..++++.. -.++++
T Consensus 974 kavyi~P~raLa~q~~~~~~~~f~~~~g---~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v 1047 (1724)
T 4f92_B 974 RCVYITPMEALAEQVYMDWYEKFQDRLN---KKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNI 1047 (1724)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTTTSC---CCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSC
T ss_pred EEEEEcChHHHHHHHHHHHHHHhchhcC---CEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCccccccccee
Confidence 699999999999999998865 555454 8999999987654332 2358999999999988887533 347899
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCcc-CCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCce--
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKIT-SDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV-- 439 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~-~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i-- 439 (651)
++||+||+|.|.+. .++.+..++.++.... ....++|+|++|||++ +..++++++-.++..+.....+..+-.+
T Consensus 1048 ~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~--N~~dla~WL~~~~~~~~~~~~~~RPvpL~~ 1124 (1724)
T 4f92_B 1048 NLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLS--NAKDVAHWLGCSATSTFNFHPNVRPVPLEL 1124 (1724)
T ss_dssp SEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT--THHHHHHHHTCCSTTEEECCGGGCSSCEEE
T ss_pred eEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC--CHHHHHHHhCCCCCCeEEeCCCCCCCCeEE
Confidence 99999999988764 5665555554331100 0012689999999997 6788888774332111111111111111
Q ss_pred -------------------------------EEEEEEeCcchHH------------------------------------
Q psy8712 440 -------------------------------HHVVVKIDPQQDE------------------------------------ 452 (651)
Q Consensus 440 -------------------------------~~~~~~~~~~~~~------------------------------------ 452 (651)
...+++|.+++..
T Consensus 1125 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 1204 (1724)
T 4f92_B 1125 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLS 1204 (1724)
T ss_dssp EEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCC
T ss_pred EEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcc
Confidence 2355666654311
Q ss_pred -------------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEE----------eCCCCChhhhh
Q psy8712 453 -------------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIIN----------MTLPDDKANYV 497 (651)
Q Consensus 453 -------------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn----------~dlP~s~~~Yi 497 (651)
..+.++......++.||+.+++|||+|.+.+||. ...|.+..+|+
T Consensus 1205 d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1205 DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp CHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred cHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 1111233445667889999999999999999993 33467899999
Q ss_pred hhcCccccCCC--ceEEEEeeeCCcc
Q psy8712 498 HRIGRVGRAER--MGLAISLVSTVPE 521 (651)
Q Consensus 498 hRiGR~GR~g~--~G~ai~lv~~~de 521 (651)
||+|||||+|. .|.|++++.+.+.
T Consensus 1285 Qm~GRAGR~g~d~~G~avll~~~~~~ 1310 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIMCQGSKK 1310 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEEEEGGGH
T ss_pred HhhccccCCCCCCceEEEEEecchHH
Confidence 99999999987 7999999887543
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=316.20 Aligned_cols=214 Identities=19% Similarity=0.175 Sum_probs=154.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH---HHhcc-CCcEEEECchhhHHHHhCCCcccC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM---SVLSS-GVDIVVGTPGRMEDLISGGHLSLT 360 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~---~~L~~-~~dIlV~TP~rL~~ll~~~~l~l~ 360 (651)
++++||+||++||.|+++.++++...++ +++..+.+..+...+. ..+.. .++|+|+||+.+. +.+.++
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~---i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~ 724 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWP---VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFK 724 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTT---CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCS
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCC---CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCcccc
Confidence 4899999999999999999987765444 8888888876654443 34444 4999999997553 346689
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCcc----
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP---- 436 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~---- 436 (651)
++++|||||||++ ......+++.++. +.+++++|||+.+ ....+....+.++..+.........
T Consensus 725 ~l~lvIiDEaH~~-----g~~~~~~l~~l~~------~~~vl~lSATp~p-~~l~~~~~~~~~~~~i~~~~~~r~~i~~~ 792 (1151)
T 2eyq_A 725 DLGLLIVDEEHRF-----GVRHKERIKAMRA------NVDILTLTATPIP-RTLNMAMSGMRDLSIIATPPARRLAVKTF 792 (1151)
T ss_dssp SEEEEEEESGGGS-----CHHHHHHHHHHHT------TSEEEEEESSCCC-HHHHHHHTTTSEEEECCCCCCBCBCEEEE
T ss_pred ccceEEEechHhc-----ChHHHHHHHHhcC------CCCEEEEcCCCCh-hhHHHHHhcCCCceEEecCCCCccccEEE
Confidence 9999999999984 3344555555554 5899999999887 6666666555554433322211110
Q ss_pred -----------------CceEEEEEEeCcch--HHHHHHH---------------------------hhccccceeeccc
Q psy8712 437 -----------------ETVHHVVVKIDPQQ--DETWGRL---------------------------RSHIQTDGVHARD 470 (651)
Q Consensus 437 -----------------~~i~~~~~~~~~~~--~~~~~~l---------------------------~~~~~~~~l~~td 470 (651)
..-.+.+++|+..+ +.....+ +...+.+++++|+
T Consensus 793 ~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~ 872 (1151)
T 2eyq_A 793 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 872 (1151)
T ss_dssp EEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS
T ss_pred EecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 00134566666543 1111111 2334567888999
Q ss_pred cccCCCCCCCCCEEEEeCCC-CChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 471 NARPGIDISGLPFIINMTLP-DDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 471 ~~~rGIDip~v~~VIn~dlP-~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
.+.+|||+|++++||+++.+ .+...|+||+||+||.|+.|.|++++.+
T Consensus 873 v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~ 921 (1151)
T 2eyq_A 873 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 921 (1151)
T ss_dssp TTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred cceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECC
Confidence 99999999999999999984 5889999999999999999999999875
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=307.03 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=86.2
Q ss_pred CeEEEEeCCHHHHHHH-HHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHH------hCCCc
Q psy8712 285 PQAIIIEPSRELAEQT-FNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLI------SGGHL 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi-~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll------~~~~l 357 (651)
.++|||+||++|+.|+ .+.++.+... .+++..+.|+.....+...+...++|+|+||++|.+.+ ....+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKK----WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTT----TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCc----CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccce
Confidence 3689999999999999 9999998864 27889999998877766667778999999999999988 44557
Q ss_pred ccCCcceEeeccchhhhhccchHH-HHHHHhcC-CCc------cCCCCceeEEEEeeccCh
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNL-IDRMHKQI-PKI------TSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~-i~~il~~l-p~~------~~~~~~~Q~l~~SATl~~ 410 (651)
.+.++++|||||||++...++... +..++... ... ......+|++++|||++.
T Consensus 133 ~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 133 QLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp CGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred ecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 789999999999999876443333 33222221 000 000014799999999974
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-33 Score=317.58 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=129.0
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC--------
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH-------- 356 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~-------- 356 (651)
+++|||+||++||.|+++.++.+. +. ...+ . +. .++||+++++++..+.
T Consensus 271 ~~~lilaPTr~La~Q~~~~l~~~~-------i~--~~~~--~-------l~-----~v~tp~~ll~~l~~~~l~~~l~~~ 327 (673)
T 2wv9_A 271 LRTAVLAPTRVVAAEMAEALRGLP-------VR--YLTP--A-------VQ-----REHSGNEIVDVMCHATLTHRLMSP 327 (673)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTSC-------CE--ECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSS
T ss_pred CcEEEEccHHHHHHHHHHHHhcCC-------ee--eecc--c-------cc-----ccCCHHHHHHHHHhhhhHHHHhcc
Confidence 479999999999999999887542 22 1000 0 00 1667776655444332
Q ss_pred cccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCC---C
Q psy8712 357 LSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGE---D 433 (651)
Q Consensus 357 l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~---~ 433 (651)
..++++++|||||||++ +..+...+..+...++. .++|+++||||+++ .+..+... ..|. ..+... .
T Consensus 328 ~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-----~~~~vl~~SAT~~~-~i~~~~~~--~~~i-~~v~~~~~~~ 397 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-----GEAAAIFMTATPPG-TSDPFPDT--NSPV-HDVSSEIPDR 397 (673)
T ss_dssp SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-----TSCEEEEECSSCTT-CCCSSCCC--SSCE-EEEECCCCSS
T ss_pred cccccceEEEEeCCccc-CccHHHHHHHHHHhccc-----cCCcEEEEcCCCCh-hhhhhccc--CCce-EEEeeecCHH
Confidence 35899999999999998 22222223333333221 15899999999986 54333221 1222 222110 1
Q ss_pred Cc-------cCceEEEEEEeCcchHH--HHHHH---------------------hhccccceeeccccccCCCCCCCCCE
Q psy8712 434 AV-------PETVHHVVVKIDPQQDE--TWGRL---------------------RSHIQTDGVHARDNARPGIDISGLPF 483 (651)
Q Consensus 434 ~~-------~~~i~~~~~~~~~~~~~--~~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~ 483 (651)
.. .+.-.+.+++|+..+.. ....| +...+..++++|+.+.+|||+| +++
T Consensus 398 ~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 398 AWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp CCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 00 01124578888876532 22222 2334567888999999999999 999
Q ss_pred EEE--------------------eCCCCChhhhhhhcCccccC-CCceEEEEeee
Q psy8712 484 IIN--------------------MTLPDDKANYVHRIGRVGRA-ERMGLAISLVS 517 (651)
Q Consensus 484 VIn--------------------~dlP~s~~~YihRiGR~GR~-g~~G~ai~lv~ 517 (651)
||| ||+|.+.++|+||+||+||. |+.|.|++|+.
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 998 67999999999999999999 89999999975
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=313.47 Aligned_cols=116 Identities=19% Similarity=0.331 Sum_probs=98.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++||++||++|+.|+++.++.+.. ++++..++|+.... ..++|+|+||++|.+++......++++++
T Consensus 83 ~~vlvl~PtraLa~Q~~~~l~~~~~-----~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~l 150 (997)
T 4a4z_A 83 TKTIYTSPIKALSNQKFRDFKETFD-----DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEF 150 (997)
T ss_dssp CEEEEEESCGGGHHHHHHHHHTTC-------CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHcC-----CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCE
Confidence 3799999999999999999987643 37888899987643 34899999999999999888888899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
|||||||++.+++|...+..++..++. +.|++++|||+++ ..+++.++
T Consensus 151 vViDEaH~l~d~~~g~~~e~ii~~l~~------~v~iIlLSAT~~n--~~ef~~~l 198 (997)
T 4a4z_A 151 VIFDEVHYVNDQDRGVVWEEVIIMLPQ------HVKFILLSATVPN--TYEFANWI 198 (997)
T ss_dssp EEECCTTCCCTTCTTCCHHHHHHHSCT------TCEEEEEECCCTT--HHHHHHHH
T ss_pred EEEECcccccccchHHHHHHHHHhccc------CCCEEEEcCCCCC--hHHHHHHH
Confidence 999999999999999999999999987 6899999999974 33555554
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=302.75 Aligned_cols=205 Identities=18% Similarity=0.202 Sum_probs=149.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++||++|||+||.|+++.+.+... .++...+|+.. +..+++|+|+||++| +.+..+.++++++|
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~g------~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~l 322 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAHG------IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDII 322 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHS------CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEE
T ss_pred eEEEEcchHHHHHHHHHHHHHHhC------CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEE
Confidence 699999999999999987765543 45566777754 456799999999997 56778888999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeE--EEccCCCCc--------
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW--VDLKGEDAV-------- 435 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~--i~~~~~~~~-------- 435 (651)
||||||+ ++.+|...+..+++.++..+ ...++++|||++. .+. ...|.. +.+......
T Consensus 323 VlDEAH~-l~~~~~~~l~~Il~~l~~~~----~~llil~SAT~~~-~i~------~~~p~i~~v~~~~~~~i~~~~~~~~ 390 (666)
T 3o8b_A 323 ICDECHS-TDSTTILGIGTVLDQAETAG----ARLVVLATATPPG-SVT------VPHPNIEEVALSNTGEIPFYGKAIP 390 (666)
T ss_dssp EETTTTC-CSHHHHHHHHHHHHHTTTTT----CSEEEEEESSCTT-CCC------CCCTTEEEEECBSCSSEEETTEEEC
T ss_pred EEccchh-cCccHHHHHHHHHHhhhhcC----CceEEEECCCCCc-ccc------cCCcceEEEeecccchhHHHHhhhh
Confidence 9999965 56788888999999988631 2347788999986 321 122221 111111100
Q ss_pred --cCceEEEEEEeCcchHH--HHHHH------------------hhccccceeeccccccCCCCCCCCCEEE--------
Q psy8712 436 --PETVHHVVVKIDPQQDE--TWGRL------------------RSHIQTDGVHARDNARPGIDISGLPFII-------- 485 (651)
Q Consensus 436 --~~~i~~~~~~~~~~~~~--~~~~l------------------~~~~~~~~l~~td~~~rGIDip~v~~VI-------- 485 (651)
...-.+.+++++..+.. ....+ +......++++||.+++|||++ |++||
T Consensus 391 l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ 469 (666)
T 3o8b_A 391 IEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQ 469 (666)
T ss_dssp GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEE
T ss_pred hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhCCCcEEEECChHHccCCCC-CcEEEecCccccc
Confidence 01123678888886643 22223 1112336778899999999997 99988
Q ss_pred --EeC-----------CCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 486 --NMT-----------LPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 486 --n~d-----------lP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
||| +|.+.++|+||+||||| |+.|. ++|+++.+.
T Consensus 470 ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 470 TVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp EEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred ccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 788 99999999999999999 99999 999988543
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-29 Score=274.75 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=90.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+.+.++++... +..++..+.|+........ +...++|+|+||+++...+..+.+.+.++++|
T Consensus 54 ~~liv~P~~~L~~q~~~~~~~~~~~---~~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~v 129 (494)
T 1wp9_A 54 KVLMLAPTKPLVLQHAESFRRLFNL---PPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLI 129 (494)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHBCS---CGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhCc---chhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEE
Confidence 6999999999999999999988632 2358888888887665433 33468999999999999998888889999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
|+||||++.+......+...+..... ..+++++|||+.
T Consensus 130 IiDEaH~~~~~~~~~~~~~~~~~~~~------~~~~l~lTaTp~ 167 (494)
T 1wp9_A 130 VFDEAHRAVGNYAYVFIAREYKRQAK------NPLVIGLTASPG 167 (494)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHCS------SCCEEEEESCSC
T ss_pred EEECCcccCCCCcHHHHHHHHHhcCC------CCeEEEEecCCC
Confidence 99999999865444445554444333 479999999986
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-31 Score=292.80 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=131.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcE-EEECchhhHHHHhCCCc------
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDI-VVGTPGRMEDLISGGHL------ 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dI-lV~TP~rL~~ll~~~~l------ 357 (651)
+++|||+||++||.|+++.++.+. +. ...+ .+ .|+||+++.+++..+.+
T Consensus 38 ~~~lil~Ptr~La~Q~~~~l~~~~-------v~--~~~~---------------~~~~v~Tp~~l~~~l~~~~l~~~~~~ 93 (440)
T 1yks_A 38 LRTLVLAPTRVVLSEMKEAFHGLD-------VK--FHTQ---------------AFSAHGSGREVIDAMCHATLTYRMLE 93 (440)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTSC-------EE--EESS---------------CCCCCCCSSCCEEEEEHHHHHHHHTS
T ss_pred CeEEEEcchHHHHHHHHHHHhcCC-------eE--Eecc---------------cceeccCCccceeeecccchhHhhhC
Confidence 479999999999999999887432 22 1111 11 48999988766655443
Q ss_pred --ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeE-EEccCCC-
Q psy8712 358 --SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW-VDLKGED- 433 (651)
Q Consensus 358 --~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~-i~~~~~~- 433 (651)
.++++++|||||||++ +.++...+..+...++. .++|++++|||+++ .+..++.. ..+.. +......
T Consensus 94 ~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~-----~~~~~l~~SAT~~~-~~~~~~~~--~~~~~~~~~~~~~~ 164 (440)
T 1yks_A 94 PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA-----NESATILMTATPPG-TSDEFPHS--NGEIEDVQTDIPSE 164 (440)
T ss_dssp SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-----TSCEEEEECSSCTT-CCCSSCCC--SSCEEEEECCCCSS
T ss_pred cccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-----CCceEEEEeCCCCc-hhhhhhhc--CCCeeEeeeccChH
Confidence 3789999999999998 33333333333322221 15899999999986 44433321 12221 1111010
Q ss_pred Ccc-------CceEEEEEEeCcchHH--HHHHH---------------------hhccccceeeccccccCCCCCCCCCE
Q psy8712 434 AVP-------ETVHHVVVKIDPQQDE--TWGRL---------------------RSHIQTDGVHARDNARPGIDISGLPF 483 (651)
Q Consensus 434 ~~~-------~~i~~~~~~~~~~~~~--~~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~ 483 (651)
... +.-.+.+++|+..+.. ....+ +...+..++++|+.+++|||+| +++
T Consensus 165 ~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~ 243 (440)
T 1yks_A 165 PWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLC-VER 243 (440)
T ss_dssp CCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTTCCTTCC-CSE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhheeeccC-ceE
Confidence 000 1124578888876532 22222 2223557788999999999999 999
Q ss_pred EEE-------------------eCCCCChhhhhhhcCccccC-CCceEEEEeee
Q psy8712 484 IIN-------------------MTLPDDKANYVHRIGRVGRA-ERMGLAISLVS 517 (651)
Q Consensus 484 VIn-------------------~dlP~s~~~YihRiGR~GR~-g~~G~ai~lv~ 517 (651)
||| |+.|.+.++|+||+||+||. |+.|.|++|+.
T Consensus 244 VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 244 VLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 996 99999999999999999998 78999999984
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=315.25 Aligned_cols=231 Identities=18% Similarity=0.209 Sum_probs=158.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCc--ccC
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHL--SLT 360 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l--~l~ 360 (651)
++.++|+|+|+++||.|+++.+++....++ ++|..++|+.+...+. ..+++|+|+|||++..++++... .++
T Consensus 133 ~~~k~lyiaP~kALa~e~~~~l~~~~~~~g---i~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~ 206 (1724)
T 4f92_B 133 DDFKIIYIAPMRSLVQEMVGSFGKRLATYG---ITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQ 206 (1724)
T ss_dssp TSCEEEEECSSHHHHHHHHHHHHHHHTTTT---CCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHhhCC---CEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhc
Confidence 345899999999999999999988766554 9999999998754321 24689999999999777765432 378
Q ss_pred CcceEeeccchhhhhccchHHHHHHHhcCCCc-cCCCCceeEEEEeeccChHHHHHHHHHhccC-------------CeE
Q psy8712 361 HCRFFVLDEADGLLKQGYGNLIDRMHKQIPKI-TSDGKRLQMIVCSATLHDFDVKKMAERLMYF-------------PTW 426 (651)
Q Consensus 361 ~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~-~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~-------------p~~ 426 (651)
++++|||||+|.+-+ ..+..++.++.++... .....+.|+|++|||++ +..++++++-.+ |+.
T Consensus 207 ~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~--N~~dvA~wL~~~~~~~~~~~~~~~RPvp 283 (1724)
T 4f92_B 207 LVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLP--NYEDVATFLRVDPAKGLFYFDNSFRPVP 283 (1724)
T ss_dssp TEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCT--THHHHHHHTTCCHHHHEEECCGGGCSSC
T ss_pred CcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccC--CHHHHHHHhCCCCCCCeEEECCCCccCc
Confidence 999999999997765 5666666555432110 00011589999999998 577787765432 211
Q ss_pred EE-----ccCCCC----------------ccCceEEEEEEeCcchH----------------------------------
Q psy8712 427 VD-----LKGEDA----------------VPETVHHVVVKIDPQQD---------------------------------- 451 (651)
Q Consensus 427 i~-----~~~~~~----------------~~~~i~~~~~~~~~~~~---------------------------------- 451 (651)
+. +..... ....-++.++||.+++.
T Consensus 284 L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1724)
T 4f92_B 284 LEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRT 363 (1724)
T ss_dssp EEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHH
T ss_pred cEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHh
Confidence 11 000000 00011356777766531
Q ss_pred ------------------------------HHHHHHhhccccceeeccccccCCCCCCCCCEEEE----eC------CCC
Q psy8712 452 ------------------------------ETWGRLRSHIQTDGVHARDNARPGIDISGLPFIIN----MT------LPD 491 (651)
Q Consensus 452 ------------------------------~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn----~d------lP~ 491 (651)
...+.+++.....+++||+.++.|||+|.+++||. || .|-
T Consensus 364 ~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~l 443 (1724)
T 4f92_B 364 EAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTEL 443 (1724)
T ss_dssp TTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEEC
T ss_pred hhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccC
Confidence 11111133334566778888889999999999996 54 356
Q ss_pred ChhhhhhhcCccccCCC--ceEEEEeeeCCccc
Q psy8712 492 DKANYVHRIGRVGRAER--MGLAISLVSTVPEK 522 (651)
Q Consensus 492 s~~~YihRiGR~GR~g~--~G~ai~lv~~~de~ 522 (651)
++.+|+||+|||||.|. .|.+|.+.++.+..
T Consensus 444 s~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 444 GALDILQMLGRAGRPQYDTKGEGILITSHGELQ 476 (1724)
T ss_dssp CHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCC
T ss_pred CHHHHHHhhhhccCCCCCCccEEEEEecchhHH
Confidence 89999999999999874 79999998875433
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=281.59 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=147.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+++.++++.... .+++..+.|+.+...+ +...++|+|+||+.+. ......++++++|
T Consensus 159 ~vlvl~P~~~L~~Q~~~~~~~~~~~~---~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~---~~~~~~~~~~~li 229 (510)
T 2oca_A 159 KILIIVPTTALTTQMADDFVDYRLFS---HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVV---KQPKEWFSQFGMM 229 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTSSC---GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHT---TSCGGGGGGEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhhcCC---ccceEEEecCCccccc---cccCCcEEEEeHHHHh---hchhhhhhcCCEE
Confidence 79999999999999999999886543 3788888888776554 4567999999999653 3344567889999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH-HHHhccCCeEEEccCC------------
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM-AERLMYFPTWVDLKGE------------ 432 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l-~~~~l~~p~~i~~~~~------------ 432 (651)
||||||++.. +.+..+++.++. ..+++++|||+++ ....+ ....+.++..+.+...
T Consensus 230 IiDE~H~~~~----~~~~~il~~~~~------~~~~l~lSATp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (510)
T 2oca_A 230 MNDECHLATG----KSISSIISGLNN------CMFKFGLSGSLRD-GKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELK 298 (510)
T ss_dssp EEETGGGCCH----HHHHHHGGGCTT------CCEEEEEESCGGG-CSSCHHHHHHHHCSEECCCCCC---------CCE
T ss_pred EEECCcCCCc----ccHHHHHHhccc------CcEEEEEEeCCCC-CcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCce
Confidence 9999999875 457778888865 5799999999965 32221 1111112222111110
Q ss_pred ------------------CCc-------------------------cCceEEEEEEeCcchHHHH-HHH-----------
Q psy8712 433 ------------------DAV-------------------------PETVHHVVVKIDPQQDETW-GRL----------- 457 (651)
Q Consensus 433 ------------------~~~-------------------------~~~i~~~~~~~~~~~~~~~-~~l----------- 457 (651)
... ...-...++++.......+ ..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~ 378 (510)
T 2oca_A 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVS 378 (510)
T ss_dssp EEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEES
T ss_pred EEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEE
Confidence 000 0012334444442211111 111
Q ss_pred --------------hhccccceeecc-ccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 458 --------------RSHIQTDGVHAR-DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 458 --------------~~~~~~~~l~~t-d~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
+...+..++.+| +.+.+|+|+|++++||++++|.+...|+||+||+||.|..|.++++++-
T Consensus 379 g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 379 GEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp SSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEe
Confidence 223345677888 9999999999999999999999999999999999999998866666654
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-29 Score=275.00 Aligned_cols=205 Identities=17% Similarity=0.131 Sum_probs=131.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++||++|||+||.|+++.++.+ .+....+..... -..+..+.+.|.+.+...+... ..++++++
T Consensus 51 ~~~lvl~Ptr~La~Q~~~~l~g~---------~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~ 115 (459)
T 2z83_A 51 LRTAVLAPTRVVAAEMAEALRGL---------PVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNL 115 (459)
T ss_dssp CCEEEEECSHHHHHHHHHHTTTS---------CEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSE
T ss_pred CcEEEECchHHHHHHHHHHhcCc---------eEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcE
Confidence 37999999999999999988632 221111111100 0123456778888876655443 45789999
Q ss_pred Eeeccchh-----hhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccC--CCCcc-
Q psy8712 365 FVLDEADG-----LLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKG--EDAVP- 436 (651)
Q Consensus 365 lViDEaD~-----ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~--~~~~~- 436 (651)
|||||||+ ++..+|...+.. . . +.|++++|||++. .+..+... ..|....... .....
T Consensus 116 iViDEaH~~~~~~~~~~~~~~~~~~----~-~------~~~~il~SAT~~~-~~~~~~~~--~~pi~~~~~~~~~~~~~~ 181 (459)
T 2z83_A 116 FVMDEAHFTDPASIAARGYIATKVE----L-G------EAAAIFMTATPPG-TTDPFPDS--NAPIHDLQDEIPDRAWSS 181 (459)
T ss_dssp EEESSTTCCSHHHHHHHHHHHHHHH----T-T------SCEEEEECSSCTT-CCCSSCCC--SSCEEEEECCCCSSCCSS
T ss_pred EEEECCccCCchhhHHHHHHHHHhc----c-C------CccEEEEEcCCCc-chhhhccC--CCCeEEecccCCcchhHH
Confidence 99999998 566555433221 1 2 5899999999986 54333221 3343321111 00000
Q ss_pred ------CceEEEEEEeCcchHH--HHHHH---------------------hhccccceeeccccccCCCCCCCCCEEEE-
Q psy8712 437 ------ETVHHVVVKIDPQQDE--TWGRL---------------------RSHIQTDGVHARDNARPGIDISGLPFIIN- 486 (651)
Q Consensus 437 ------~~i~~~~~~~~~~~~~--~~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn- 486 (651)
+.-.+.+++|++.... ....+ +......++.+|+.+++|||+|+ ++|||
T Consensus 182 ~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 182 GYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEEC
T ss_pred HHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEEC
Confidence 0123578888876532 22222 12234567889999999999999 99999
Q ss_pred -------------------eCCCCChhhhhhhcCccccCCC-ceEEEEeeeCC
Q psy8712 487 -------------------MTLPDDKANYVHRIGRVGRAER-MGLAISLVSTV 519 (651)
Q Consensus 487 -------------------~dlP~s~~~YihRiGR~GR~g~-~G~ai~lv~~~ 519 (651)
||+|.+..+|+||+|||||.|+ .|.+++|+++.
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7899999999999999999997 99999999875
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=285.05 Aligned_cols=215 Identities=19% Similarity=0.239 Sum_probs=142.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCc-cHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcc
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGV-NVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCR 363 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~-~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~ 363 (651)
++++|++|+|+||.|+++.+..... +++...+|+. .... ......+|+|+|||++.+.+... ..+.+++
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~------~~v~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~ 210 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMD------VKLGEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAMED-HDLSRYS 210 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTT------CCBTTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhC------Cchhheecceecccc---ccCCCCCEEEECHHHHHHHHhhC-ccccCCC
Confidence 4789999999999999887654332 2221112211 1000 11246899999999999876553 3578999
Q ss_pred eEeeccchh-hhhcc-chHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCc------
Q psy8712 364 FFVLDEADG-LLKQG-YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAV------ 435 (651)
Q Consensus 364 ~lViDEaD~-ll~~g-f~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~------ 435 (651)
+|||||+|. .++.. ....+..+....+ +.|++++|||++. ..+.+.+ .++..+.+.+....
T Consensus 211 ~lIlDEah~R~ld~d~~~~~l~~l~~~~~-------~~~iIl~SAT~~~---~~l~~~~-~~~~vi~v~gr~~pv~~~~~ 279 (773)
T 2xau_A 211 CIILDEAHERTLATDILMGLLKQVVKRRP-------DLKIIIMSATLDA---EKFQRYF-NDAPLLAVPGRTYPVELYYT 279 (773)
T ss_dssp EEEECSGGGCCHHHHHHHHHHHHHHHHCT-------TCEEEEEESCSCC---HHHHHHT-TSCCEEECCCCCCCEEEECC
T ss_pred EEEecCccccccchHHHHHHHHHHHHhCC-------CceEEEEeccccH---HHHHHHh-cCCCcccccCcccceEEEEe
Confidence 999999995 66533 2333455554443 4799999999975 3344433 33333333322110
Q ss_pred ----c----------------CceEEEEEEeCcchHHH--HHHH------------------------------------
Q psy8712 436 ----P----------------ETVHHVVVKIDPQQDET--WGRL------------------------------------ 457 (651)
Q Consensus 436 ----~----------------~~i~~~~~~~~~~~~~~--~~~l------------------------------------ 457 (651)
. ..-...+++++...+.. ...+
T Consensus 280 ~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~ 359 (773)
T 2xau_A 280 PEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEP 359 (773)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSC
T ss_pred cCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhh
Confidence 0 01235677777654211 1111
Q ss_pred hh-----ccccceeeccccccCCCCCCCCCEEEEeCC------------------CCChhhhhhhcCccccCCCceEEEE
Q psy8712 458 RS-----HIQTDGVHARDNARPGIDISGLPFIINMTL------------------PDDKANYVHRIGRVGRAERMGLAIS 514 (651)
Q Consensus 458 ~~-----~~~~~~l~~td~~~rGIDip~v~~VIn~dl------------------P~s~~~YihRiGR~GR~g~~G~ai~ 514 (651)
+. .....++.+|+.+++|||+|+|++||++++ |.+..+|+||+|||||. +.|.||.
T Consensus 360 f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~ 438 (773)
T 2xau_A 360 APESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFR 438 (773)
T ss_dssp CCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEE
T ss_pred cccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEE
Confidence 11 234567888999999999999999999888 89999999999999999 8999999
Q ss_pred eeeCCcc
Q psy8712 515 LVSTVPE 521 (651)
Q Consensus 515 lv~~~de 521 (651)
|+++.+.
T Consensus 439 l~~~~~~ 445 (773)
T 2xau_A 439 LYTEEAF 445 (773)
T ss_dssp SSCHHHH
T ss_pred EecHHHh
Confidence 9987543
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-28 Score=267.14 Aligned_cols=204 Identities=14% Similarity=0.084 Sum_probs=138.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCee-EEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIR-ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~-v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
++|||+||++|+.|+.+.++.|+ ++ +..+.|+.. ...+|+|+||+.+...+.. ..+++++
T Consensus 135 ~~Lvl~P~~~L~~Q~~~~~~~~~-------~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~---~~~~~~l 195 (472)
T 2fwr_A 135 PTLIVVPTLALAEQWKERLGIFG-------EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFML 195 (472)
T ss_dssp CEEEEESSHHHHHHHHHHGGGGC-------GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhCC-------CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH---hcCCCCE
Confidence 68999999999999999988852 67 777777664 2479999999998775541 1256899
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChH------------------HHHHHHHHhccCCeE
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDF------------------DVKKMAERLMYFPTW 426 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~------------------~v~~l~~~~l~~p~~ 426 (651)
|||||||++.+..|. .+++.++. .+++++|||+... ...++...++.++..
T Consensus 196 iIvDEaH~~~~~~~~----~~~~~~~~-------~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~ 264 (472)
T 2fwr_A 196 LIFDEVHHLPAESYV----QIAQMSIA-------PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTI 264 (472)
T ss_dssp EEEETGGGTTSTTTH----HHHHTCCC-------SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEE
T ss_pred EEEECCcCCCChHHH----HHHHhcCC-------CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEE
Confidence 999999999887664 35555543 6899999998621 233333333333221
Q ss_pred --EEccCCCC------------------------cc--------------------------------------------
Q psy8712 427 --VDLKGEDA------------------------VP-------------------------------------------- 436 (651)
Q Consensus 427 --i~~~~~~~------------------------~~-------------------------------------------- 436 (651)
+.+..... ..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 344 (472)
T 2fwr_A 265 KRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREIL 344 (472)
T ss_dssp CCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 11110000 00
Q ss_pred --CceEEEEEEeCcchHH----------------------HHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCC
Q psy8712 437 --ETVHHVVVKIDPQQDE----------------------TWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDD 492 (651)
Q Consensus 437 --~~i~~~~~~~~~~~~~----------------------~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s 492 (651)
..-.+.+++++..+.. .....+......++.+|+.+.+|+|+|++++||+||.|.+
T Consensus 345 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s 424 (472)
T 2fwr_A 345 ERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGS 424 (472)
T ss_dssp HHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSC
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCC
Confidence 0012234444433211 1111133345677889999999999999999999999999
Q ss_pred hhhhhhhcCccccCCC---ceEEEEeeeCC
Q psy8712 493 KANYVHRIGRVGRAER---MGLAISLVSTV 519 (651)
Q Consensus 493 ~~~YihRiGR~GR~g~---~G~ai~lv~~~ 519 (651)
+..|+||+||+||.|. ...++.|++..
T Consensus 425 ~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 425 AREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 9999999999999984 34677778764
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=262.49 Aligned_cols=206 Identities=16% Similarity=0.078 Sum_probs=142.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEe
Q psy8712 287 AIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFV 366 (651)
Q Consensus 287 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lV 366 (651)
.+|++|||+||.|+++.++.++ +++..++|+...... .-....+++++|++.+. ....+++||
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~g-------~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvV 244 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAAG-------VPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAV 244 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-------CCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEE
T ss_pred eEEEeCHHHHHHHHHHHHHhcC-------CcEEEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEE
Confidence 5889999999999999998863 778888887664100 00112566777765432 246789999
Q ss_pred eccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEcc-CC------CCc---c
Q psy8712 367 LDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK-GE------DAV---P 436 (651)
Q Consensus 367 iDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~-~~------~~~---~ 436 (651)
|||||++++.+|+..+..++..++.. ..|++++|||.+ .+..+...... +..+... .. ... .
T Consensus 245 IDEaH~l~d~~~g~~~~~~l~~l~~~-----~i~il~~SAT~~--~i~~l~~~~~~-~~~v~~~~r~~~l~~~~~~l~~l 316 (677)
T 3rc3_A 245 IDEIQMIRDPARGWAWTRALLGLCAE-----EVHLCGEPAAID--LVMELMYTTGE-EVEVRDYKRLTPISVLDHALESL 316 (677)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHCCEE-----EEEEEECGGGHH--HHHHHHHHHTC-CEEEEECCCSSCEEECSSCCCSG
T ss_pred EecceecCCccchHHHHHHHHccCcc-----ceEEEeccchHH--HHHHHHHhcCC-ceEEEEeeecchHHHHHHHHHHH
Confidence 99999999999999999999888732 689999999974 66666655422 2221110 00 000 0
Q ss_pred Cce-EEEEEEeCcchH---------------------------HHHHHHhhc--cccceeeccccccCCCCCCCCCEEEE
Q psy8712 437 ETV-HHVVVKIDPQQD---------------------------ETWGRLRSH--IQTDGVHARDNARPGIDISGLPFIIN 486 (651)
Q Consensus 437 ~~i-~~~~~~~~~~~~---------------------------~~~~~l~~~--~~~~~l~~td~~~rGIDip~v~~VIn 486 (651)
..+ ...++++.+.++ ......+.. ...+++++|+.+++|||+ +|++||+
T Consensus 317 ~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~ 395 (677)
T 3rc3_A 317 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIF 395 (677)
T ss_dssp GGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEE
T ss_pred HhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEE
Confidence 000 012344555331 111222333 457889999999999999 8999999
Q ss_pred eCC--------------CCChhhhhhhcCccccCCCc---eEEEEeeeC
Q psy8712 487 MTL--------------PDDKANYVHRIGRVGRAERM---GLAISLVST 518 (651)
Q Consensus 487 ~dl--------------P~s~~~YihRiGR~GR~g~~---G~ai~lv~~ 518 (651)
+++ |.+..+|+||+|||||.|+. |.|+.+...
T Consensus 396 ~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 396 YSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp SCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred CCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 999 77999999999999999964 888877654
|
| >3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-27 Score=234.35 Aligned_cols=167 Identities=29% Similarity=0.591 Sum_probs=150.8
Q ss_pred ccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEecc---CCceeecccccccccc--CCC
Q psy8712 85 ISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTD---EGLCRVGWSTSQAVRD--LGT 159 (651)
Q Consensus 85 ~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~--~g~ 159 (651)
..+.+.|+.+++...+.|++|++.+++ .+.|.++|++.+++ +|+|||||+|.+ .+.+++||++..+.++ +|.
T Consensus 9 ~~~~v~ld~~d~~~~l~ls~d~l~v~~--~~~~~~vra~~~v~-~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~~~~G~ 85 (213)
T 3toj_A 9 LYERVLLALHDRAPQLKISDDRLTVVG--EKGYSMVRASHGVR-KGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGY 85 (213)
T ss_dssp EECCCCEEEEEECTTSEECTTSSEEEC--CSSCEEEEESCCBS-SEEEEEEEEEEECCTTCEEEEEEECTTSCTTSCTTS
T ss_pred cCCeEEechhhCCCCEEEcCCCcEEEe--CCceeEEEeCCCcc-CCeEEEEEEEeecCCCceEEEEeccCCcccccCCCC
Confidence 457889999999999999999998876 57899999999998 799999999998 7999999999999888 999
Q ss_pred CCCCCCc-CCCCccCCCcccCccCcccCCCcccccccccCC--------ceeeeeccCcccccccccchhhhhccCcchh
Q psy8712 160 DRFGFGF-GGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDN--------MTVAFTKNGQHLGLAFNISQQLKNSAFYPAV 230 (651)
Q Consensus 160 ~~~~~~~-gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~--------~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~ 230 (651)
|.+||+| +..|++-|+.....||++|+.||||||+||+++ |+|+|+|||+.+|.||+- +....+||+|
T Consensus 86 d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~---~~~~~lyPav 162 (213)
T 3toj_A 86 DKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKD---IFEGVYFPAI 162 (213)
T ss_dssp STTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEES---CCSSCBEEEE
T ss_pred CCCcEEEECCCCeEEeCCcCcccCCCCCCCCEEEEEEEcCCCccccCCccEEEEEeCCeeeeeeEEc---CCCCcEEEEE
Confidence 9999999 679999999889999999999999999999987 799999999999999984 3456899999
Q ss_pred hc-cccccccccCCCCCCCCCCC-CeEEEe
Q psy8712 231 VL-KNAEMSFNFGATPFKHEPPK-DYIAVC 258 (651)
Q Consensus 231 ~~-k~~~~~~~f~~~~~~~~~~~-~~i~~~ 258 (651)
.+ +++++.+|||. +|+++|+. .+..+.
T Consensus 163 sl~~~~~v~~NFG~-~F~~~p~~~~~~~~~ 191 (213)
T 3toj_A 163 SLYKSCTVSINFGP-CFKYPPKDLTYRPMS 191 (213)
T ss_dssp EEESSCEEEEECSS-SCSSCCSSCCCEEGG
T ss_pred EcCCCCEEEEECCC-CCccCCCCCceEcHH
Confidence 76 88999999999 99999874 454443
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=251.49 Aligned_cols=206 Identities=14% Similarity=0.118 Sum_probs=128.5
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++|||+||++||.|+++.+.. +.+....|+... .-..+.-+.+.|.+.+.+.+.. ...++++++
T Consensus 32 ~~~lvl~Pt~~La~Q~~~~~~~---------~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~ 96 (431)
T 2v6i_A 32 LRTVILAPTRVVASEMYEALRG---------EPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNL 96 (431)
T ss_dssp CCEEEEESSHHHHHHHHHHTTT---------SCEEEC--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSE
T ss_pred CCEEEECcHHHHHHHHHHHhCC---------CeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCE
Confidence 3799999999999999987751 344444443221 1112345667788888665554 456899999
Q ss_pred EeeccchhhhhccchHHHHHHHhcC-CCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEc--cCCCCc------
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQI-PKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDL--KGEDAV------ 435 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~l-p~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~--~~~~~~------ 435 (651)
|||||||++ +.++......+.... +. ++|++++|||+++ .+..+... +.|. +.+ ......
T Consensus 97 vViDEaH~~-~~~~~~~~~~l~~~~~~~------~~~~l~~SAT~~~-~~~~~~~~--~~~i-~~~~~~~~~~~~~~~~~ 165 (431)
T 2v6i_A 97 YIMDEAHFL-DPASVAARGYIETRVSMG------DAGAIFMTATPPG-TTEAFPPS--NSPI-IDEETRIPDKAWNSGYE 165 (431)
T ss_dssp EEEESTTCC-SHHHHHHHHHHHHHHHTT------SCEEEEEESSCTT-CCCSSCCC--SSCC-EEEECCCCSSCCSSCCH
T ss_pred EEEeCCccC-CccHHHHHHHHHHHhhCC------CCcEEEEeCCCCc-chhhhcCC--CCce-eeccccCCHHHHHHHHH
Confidence 999999997 433333333333332 22 5899999999986 43322211 1222 121 100000
Q ss_pred --cCceEEEEEEeCcchHH--HHHHH---------------------hhccccceeeccccccCCCCCCCCCE-------
Q psy8712 436 --PETVHHVVVKIDPQQDE--TWGRL---------------------RSHIQTDGVHARDNARPGIDISGLPF------- 483 (651)
Q Consensus 436 --~~~i~~~~~~~~~~~~~--~~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~------- 483 (651)
.+.-.+.+++|+..+.. ....+ +...+.+++++|+.+.+|||+| +.+
T Consensus 166 ~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~ 244 (431)
T 2v6i_A 166 WITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKT 244 (431)
T ss_dssp HHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEE
T ss_pred HHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCcc
Confidence 00113577888776432 12222 2233567788999999999999 655
Q ss_pred ----------EEEeCCCCChhhhhhhcCccccCCC-ceEEEEeee
Q psy8712 484 ----------IINMTLPDDKANYVHRIGRVGRAER-MGLAISLVS 517 (651)
Q Consensus 484 ----------VIn~dlP~s~~~YihRiGR~GR~g~-~G~ai~lv~ 517 (651)
||+++.|.+..+|+||+||+||.|. .|.++++..
T Consensus 245 ~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~ 289 (431)
T 2v6i_A 245 IKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSG 289 (431)
T ss_dssp EEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECS
T ss_pred ccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcC
Confidence 6889999999999999999999985 555665553
|
| >2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-26 Score=220.56 Aligned_cols=154 Identities=20% Similarity=0.291 Sum_probs=132.6
Q ss_pred eccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccC---Cceeecccccccccc--CCCCCCCCCc
Q psy8712 92 SVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDE---GLCRVGWSTSQAVRD--LGTDRFGFGF 166 (651)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~--~g~~~~~~~~ 166 (651)
+.+||...+.++.|.+.++.+ ...|.++|++.++. +|+||||++|.+. +.++|||++..+.++ +|.|..||+|
T Consensus 3 s~~dr~~~l~~~~d~l~~~~~-~~~~~~vra~~p~~-~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~~~G~d~~S~gy 80 (171)
T 2yyo_A 3 SGSSGFKHILVDGDTLSYHGN-SGEVGCYVASRPLT-KDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAY 80 (171)
T ss_dssp ---CEEESEEEETTEEEECCC-SSCCEEEECSSCCC-SSSCEEEEEEEEETTTCCCEEEEECTTCCTTSCTTSSTTCEEE
T ss_pred CcccCcceEEEcCCEEEEeCC-CCceeEEEECCCCC-CCCEEEEEEEEECCCCcEEEEEecCCCCCCccCCCccCCEEEE
Confidence 567899999999999999887 46899999999997 7999999999987 999999999998877 8999999999
Q ss_pred CC-CCccCCC-cccCccCcccCCCcccccccccC-----CceeeeeccCcccccccccchhhhhccCcchhhcc--cccc
Q psy8712 167 GG-TGKKSNN-KQFDNYGEAFGMHDVIGCLLDLD-----NMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLK--NAEM 237 (651)
Q Consensus 167 gg-~~~ks~~-~~~~~~g~~~~~~d~ig~~~~~~-----~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k--~~~~ 237 (651)
.| .|++-|+ .+.+.||++|+.||||||+||++ .++|+|+|||+.+|.||.. +....+||+|.+. |+++
T Consensus 81 ~~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~---~~~~~lyPaV~l~~~g~~v 157 (171)
T 2yyo_A 81 HADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMP---MSPDGLFPAVGMHSLGEEV 157 (171)
T ss_dssp ETTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEES---SCSSSCEEEEEECSTTEEE
T ss_pred EcCCCeEEeCCCCCCcCCCCCCCCCEEEEEEEeccCCCCcEEEEEEECCEEcCceecC---CcCCCEEEEEEEecCCCEE
Confidence 99 5888886 46899999999999999999998 4999999999999999975 3457999999999 7999
Q ss_pred ccccCCCCCCCCCC
Q psy8712 238 SFNFGATPFKHEPP 251 (651)
Q Consensus 238 ~~~f~~~~~~~~~~ 251 (651)
.+|||. ++..||+
T Consensus 158 ~vNFG~-~~~~pp~ 170 (171)
T 2yyo_A 158 RLHLNA-ELSGPSS 170 (171)
T ss_dssp EEETTC-CC-----
T ss_pred EEECCC-CCcCCCC
Confidence 999998 5666653
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-25 Score=253.55 Aligned_cols=202 Identities=11% Similarity=0.094 Sum_probs=112.3
Q ss_pred CCeEEEEeCCHHHHHHHH-HHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhC----CCcc
Q psy8712 284 APQAIIIEPSRELAEQTF-NQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISG----GHLS 358 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~-~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~----~~l~ 358 (651)
.+++|||+||++|+.|+. +.++.++. .+..+.++ .+..+.+|+|+||++|...... ..+.
T Consensus 235 ~~~vlil~P~~~L~~Q~~~~~~~~~~~-------~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~ 299 (590)
T 3h1t_A 235 KPRILFLADRNVLVDDPKDKTFTPFGD-------ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFP 299 (590)
T ss_dssp CCCEEEEEC-----------CCTTTCS-------SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcch-------hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCC
Confidence 468999999999999999 77776643 22222222 1235689999999999887642 2345
Q ss_pred cCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHH-----------------Hhc
Q psy8712 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE-----------------RLM 421 (651)
Q Consensus 359 l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~-----------------~~l 421 (651)
..++++|||||||++...+ ...+..++..++. .+++++|||.....-..+.. .++
T Consensus 300 ~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~-------~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l 371 (590)
T 3h1t_A 300 QDFFDLIIIDECHRGSARD-NSNWREILEYFEP-------AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFL 371 (590)
T ss_dssp TTSCSEEEESCCC----------CHHHHHHSTT-------SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSS
T ss_pred CCccCEEEEECCccccccc-hHHHHHHHHhCCc-------ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCcc
Confidence 6789999999999997642 2456777777764 68999999976311111111 112
Q ss_pred cCCeEEEccCCCC--------------------------------------------c------cCceEEEEEEeCcchH
Q psy8712 422 YFPTWVDLKGEDA--------------------------------------------V------PETVHHVVVKIDPQQD 451 (651)
Q Consensus 422 ~~p~~i~~~~~~~--------------------------------------------~------~~~i~~~~~~~~~~~~ 451 (651)
..+..+.+..... . .....+.+++|+....
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~ 451 (590)
T 3h1t_A 372 APYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEH 451 (590)
T ss_dssp CCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHH
T ss_pred CCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHH
Confidence 2222211111000 0 0011357777776542
Q ss_pred HHH--HHH--------------------------------hhccccc---eeeccccccCCCCCCCCCEEEEeCCCCChh
Q psy8712 452 ETW--GRL--------------------------------RSHIQTD---GVHARDNARPGIDISGLPFIINMTLPDDKA 494 (651)
Q Consensus 452 ~~~--~~l--------------------------------~~~~~~~---~l~~td~~~rGIDip~v~~VIn~dlP~s~~ 494 (651)
... ..+ +...... ++.+++.+.+|||+|++++||+++.|.+..
T Consensus 452 a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~ 531 (590)
T 3h1t_A 452 ADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMS 531 (590)
T ss_dssp HHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHH
T ss_pred HHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChH
Confidence 111 111 1111122 567789999999999999999999999999
Q ss_pred hhhhhcCccccCCC
Q psy8712 495 NYVHRIGRVGRAER 508 (651)
Q Consensus 495 ~YihRiGR~GR~g~ 508 (651)
.|+||+||+||.+.
T Consensus 532 ~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 532 EFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHTTSCCCBG
T ss_pred HHHHHHhhhcccCc
Confidence 99999999999765
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-23 Score=202.49 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=79.0
Q ss_pred CeEEEEeCCHHHHHH-HHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCC------c
Q psy8712 285 PQAIIIEPSRELAEQ-TFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGH------L 357 (651)
Q Consensus 285 p~aLIL~PTreLa~Q-i~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~------l 357 (651)
+++||++||++|+.| +.+.++.+... .+++..+.|+.........+..+++|+|+||+++.+++.... +
T Consensus 83 ~~~lil~p~~~L~~q~~~~~~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 158 (216)
T 3b6e_A 83 GKVIVLVNKVLLVEQLFRKEFQPFLKK----WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGV 158 (216)
T ss_dssp CCEEEEESSHHHHHHHHHHTHHHHHTT----TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CC
T ss_pred CcEEEEECHHHHHHHHHHHHHHHHhcc----CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCccccccc
Confidence 479999999999999 78888888754 378888888877665555555679999999999999887653 5
Q ss_pred ccCCcceEeeccchhhhhccchHHHH-HHHhcC-CC------ccCCCCceeEEEEeec
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLID-RMHKQI-PK------ITSDGKRLQMIVCSAT 407 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~-~il~~l-p~------~~~~~~~~Q~l~~SAT 407 (651)
.+.++++|||||||++.+.++...+. .++... +. ..+...+++++++|||
T Consensus 159 ~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 159 QLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred chhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 67899999999999998876655543 222211 10 0001125899999998
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=232.42 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=81.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc-cCCcEEEECchhhHHHHhCCC--cccCC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS-SGVDIVVGTPGRMEDLISGGH--LSLTH 361 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~-~~~dIlV~TP~rL~~ll~~~~--l~l~~ 361 (651)
+++|||+|+++|+.|+.+.++.+... .+.++.+.......+. .+++|+|+||++|.+++.... ..++.
T Consensus 331 ~rvLvlvpr~eL~~Q~~~~f~~f~~~---------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~ 401 (1038)
T 2w00_A 331 DKVFFVVDRKDLDYQTMKEYQRFSPD---------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQ 401 (1038)
T ss_dssp CEEEEEECGGGCCHHHHHHHHTTSTT---------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGS
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhccc---------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhcccc
Confidence 47999999999999999999887642 1235555556666664 578999999999998876532 24567
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
..+||+||||++... .....|...+|. .++++||||+.
T Consensus 402 ~~lvIiDEAHrs~~~---~~~~~I~~~~p~-------a~~lgfTATP~ 439 (1038)
T 2w00_A 402 QVVFIFDECHRSQFG---EAQKNLKKKFKR-------YYQFGFTGTPI 439 (1038)
T ss_dssp CEEEEEESCCTTHHH---HHHHHHHHHCSS-------EEEEEEESSCC
T ss_pred ccEEEEEccchhcch---HHHHHHHHhCCc-------ccEEEEeCCcc
Confidence 889999999998643 335566677764 79999999986
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=209.62 Aligned_cols=62 Identities=24% Similarity=0.199 Sum_probs=56.1
Q ss_pred ccceeeccccccCCCCCC--------CCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcccc
Q psy8712 462 QTDGVHARDNARPGIDIS--------GLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKV 523 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip--------~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~ 523 (651)
...++++||.+.||+||+ +..+||||++|.+.+.|+||+|||||+|++|.+++|++.+|+..
T Consensus 522 ~g~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~ 591 (822)
T 3jux_A 522 KGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLL 591 (822)
T ss_dssp TTCEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHH
T ss_pred CCeEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHH
Confidence 345677899999999998 66799999999999999999999999999999999999987554
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=196.27 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=85.9
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++++++|+++|+.|+.+.+....... .+..+........ .....+++|+|+||+++.+++.. .++++++
T Consensus 110 ~~~l~~~p~~~la~q~~~~~~~~~~~~--~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~ 179 (235)
T 3llm_A 110 CNIVVTQPRRISAVSVAERVAFERGEE--PGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISH 179 (235)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTTCC--TTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCE
T ss_pred eEEEEeccchHHHHHHHHHHHHHhccc--cCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcE
Confidence 478999999999999988886554321 1122222111111 11124689999999999998876 4899999
Q ss_pred Eeeccchhh-hhccch-HHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCe
Q psy8712 365 FVLDEADGL-LKQGYG-NLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPT 425 (651)
Q Consensus 365 lViDEaD~l-l~~gf~-~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~ 425 (651)
|||||||.+ ++.+|. ..++.++...+ +.|+++||||++. +. +.+.+...|.
T Consensus 180 lVlDEah~~~~~~~~~~~~l~~i~~~~~-------~~~~il~SAT~~~-~~--~~~~~~~~pv 232 (235)
T 3llm_A 180 VIVDEIHERDINTDFLLVVLRDVVQAYP-------EVRIVLMSATIDT-SM--FCEYFFNCPI 232 (235)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHHCT-------TSEEEEEECSSCC-HH--HHHHTTSCCC
T ss_pred EEEECCccCCcchHHHHHHHHHHHhhCC-------CCeEEEEecCCCH-HH--HHHHcCCCCE
Confidence 999999996 777776 46777777665 3799999999987 43 6666665553
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=202.91 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=72.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+|+ .|+.|..+.++++.. .+++..+.|+... ......+|+|+||+++..... +.....++|
T Consensus 88 ~~LIv~P~-~l~~qw~~e~~~~~~-----~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~v 153 (500)
T 1z63_A 88 PSLVICPL-SVLKNWEEELSKFAP-----HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYI 153 (500)
T ss_dssp SEEEEECS-TTHHHHHHHHHHHCT-----TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEE
T ss_pred CEEEEccH-HHHHHHHHHHHHHCC-----CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEE
Confidence 58999995 588999999988864 3566666665421 112357999999998865433 344567899
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
|+||||++-+.. ....+.+..++. .+.+++|||...
T Consensus 154 IvDEaH~~kn~~--~~~~~~l~~l~~-------~~~l~LTaTP~~ 189 (500)
T 1z63_A 154 VIDEAQNIKNPQ--TKIFKAVKELKS-------KYRIALTGTPIE 189 (500)
T ss_dssp EEETGGGGSCTT--SHHHHHHHTSCE-------EEEEEECSSCST
T ss_pred EEeCccccCCHh--HHHHHHHHhhcc-------CcEEEEecCCCC
Confidence 999999997543 234455555643 678999999743
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-20 Score=221.36 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=49.4
Q ss_pred cceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEee
Q psy8712 463 TDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLV 516 (651)
Q Consensus 463 ~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv 516 (651)
..++.+|+...+|||+|++++||+||+|.++..|+||+||+||.|+.|.+++++
T Consensus 557 ~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 557 AQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp CEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred ccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 778889999999999999999999999999999999999999999998655543
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=186.97 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=82.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+||++|+.|+.+.++++.... ...+..+.+|..... ......+|+|+||+++.. .....++++++|
T Consensus 159 ~~lil~Pt~~L~~q~~~~l~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~---~~~~~~~~~~~v 229 (282)
T 1rif_A 159 KILIIVPTTALTTQMADDFVDYRLFS---HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVK---QPKEWFSQFGMM 229 (282)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTSCC---GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTT---SCGGGGGGEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHhcccc---cceEEEEeCCCcchh---hhccCCcEEEEchHHHHh---hHHHHHhhCCEE
Confidence 68999999999999999999886533 367778888765432 223468999999987643 333456789999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
||||||++.+ +.+..+++.++. ..+++++|||+++
T Consensus 230 IiDEaH~~~~----~~~~~il~~~~~------~~~~l~lSATp~~ 264 (282)
T 1rif_A 230 MNDECHLATG----KSISSIISGLNN------CMFKFGLSGSLRD 264 (282)
T ss_dssp EEETGGGCCH----HHHHHHTTTCTT------CCEEEEECSSCCT
T ss_pred EEECCccCCc----ccHHHHHHHhhc------CCeEEEEeCCCCC
Confidence 9999999974 367788888765 5899999999975
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-19 Score=205.44 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=82.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
+++||+||++||.|+++++..+..+++ +++.+++||.+...... ..++||+||||++| .|+++.+. +.
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~lG---Lsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~ 196 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGLG---LSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLV 196 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTTT---CCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhcC---CeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcc
Confidence 689999999999999999999999886 99999999988544433 34699999999999 88887663 56
Q ss_pred cC---CcceEeeccchhhh-hccc---------------hHHHHHHHhcCCC
Q psy8712 359 LT---HCRFFVLDEADGLL-KQGY---------------GNLIDRMHKQIPK 391 (651)
Q Consensus 359 l~---~l~~lViDEaD~ll-~~gf---------------~~~i~~il~~lp~ 391 (651)
++ ++.++||||||.|+ +.+. +..+..++..++.
T Consensus 197 ~r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~ 248 (997)
T 2ipc_A 197 LRHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLER 248 (997)
T ss_dssp SCSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCC
T ss_pred cccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhh
Confidence 78 99999999999998 3322 2356677777764
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=160.72 Aligned_cols=95 Identities=17% Similarity=0.097 Sum_probs=72.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCee-EEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIR-ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~-v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
++||++||++|+.|+.+.++++. ++ +..+.|+.. ...+|+|+||+.+...... ..+++++
T Consensus 135 ~~liv~P~~~L~~q~~~~~~~~~-------~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~l 195 (237)
T 2fz4_A 135 PTLIVVPTLALAEQWKERLGIFG-------EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFML 195 (237)
T ss_dssp CEEEEESSHHHHHHHHHHHGGGC-------GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSE
T ss_pred CEEEEeCCHHHHHHHHHHHHhCC-------CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCE
Confidence 58999999999999999988742 66 667776654 2579999999998765541 1256899
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccCh
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHD 410 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~ 410 (651)
|||||||++.+..+ ..++..++. .+++++|||++.
T Consensus 196 lIiDEaH~l~~~~~----~~i~~~~~~-------~~~l~LSATp~r 230 (237)
T 2fz4_A 196 LIFDEVHHLPAESY----VQIAQMSIA-------PFRLGLTATFER 230 (237)
T ss_dssp EEEECSSCCCTTTH----HHHHHTCCC-------SEEEEEEESCC-
T ss_pred EEEECCccCCChHH----HHHHHhccC-------CEEEEEecCCCC
Confidence 99999999987554 345555553 689999999875
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-17 Score=188.47 Aligned_cols=218 Identities=17% Similarity=0.205 Sum_probs=136.4
Q ss_pred EEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhc--cchHHHH----HHHhc---CC
Q psy8712 320 LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ--GYGNLID----RMHKQ---IP 390 (651)
Q Consensus 320 ~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~--gf~~~i~----~il~~---lp 390 (651)
.+.|+.++..+...++.+ +||++|++++.... +|||||+|+|++. ++...+. .+... +|
T Consensus 302 ~~~G~e~~~~~~~~~~~g-----~tpg~LlDyl~~~~-------llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp 369 (661)
T 2d7d_A 302 FCSGIENYSRHLTLRPPG-----STPYTLLDYFPDDF-------MIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLP 369 (661)
T ss_dssp CCTTGGGGHHHHTTCCTT-----CCCBCGGGGSCSSC-------EEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred eeccchhHHHHHccccCC-----CCccHHHHHcccCc-------EEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccch
Confidence 345777777777666655 89999999885432 8999999998742 2222211 11111 12
Q ss_pred Ccc---C------CCCceeEEEEeeccChHHHHHHHHHh---------ccCCeEEEccCCCCc-----------cCceEE
Q psy8712 391 KIT---S------DGKRLQMIVCSATLHDFDVKKMAERL---------MYFPTWVDLKGEDAV-----------PETVHH 441 (651)
Q Consensus 391 ~~~---~------~~~~~Q~l~~SATl~~~~v~~l~~~~---------l~~p~~i~~~~~~~~-----------~~~i~~ 441 (651)
... + .....|+++||||+++ ........+ +.+|. +.+...... ...-.+
T Consensus 370 ~~l~~~~l~~~e~~~~~~q~i~~SAT~~~-~~~~~~~~~~~~~~r~~~l~~p~-i~v~~~~~~~~~Ll~~l~~~~~~~~~ 447 (661)
T 2d7d_A 370 SALDNRPLRFEEFEKHMHNIVYVSATPGP-YEIEHTDEMVEQIIRPTGLLDPL-IDVRPIEGQIDDLIGEIQARIERNER 447 (661)
T ss_dssp GGGGSCCCCHHHHHHTCSEEEEECSSCCH-HHHHHCSSCEEECCCTTCCCCCE-EEEECSTTHHHHHHHHHHHHHTTTCE
T ss_pred hhhhcccccHHHHhccCCCEEEEecCCCh-hHHHhhhCeeeeeecccCCCCCe-EEEecccchHHHHHHHHHHHHhcCCe
Confidence 100 0 0024799999999975 332221111 11222 222111110 011236
Q ss_pred EEEEeCcchHH--HHHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCC-----
Q psy8712 442 VVVKIDPQQDE--TWGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTL----- 489 (651)
Q Consensus 442 ~~~~~~~~~~~--~~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl----- 489 (651)
++++|++.... ....+ ++.....++++|+.+.+|+|+|+|++||++|.
T Consensus 448 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~ 527 (661)
T 2d7d_A 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGF 527 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTT
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccC
Confidence 77777765422 11112 12234567889999999999999999999998
Q ss_pred CCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchh
Q psy8712 490 PDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFD 569 (651)
Q Consensus 490 P~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 569 (651)
|.+.++|+||+|||||. ..|.|++|+++.+...... .+
T Consensus 528 p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~-----------------------------------------i~ 565 (661)
T 2d7d_A 528 LRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIA-----------------------------------------IN 565 (661)
T ss_dssp TTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHH-----------------------------------------HH
T ss_pred CCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHH-----------------------------------------HH
Confidence 99999999999999999 7899999998753322111 15
Q ss_pred HHHHHHHHHHHhcCcccccccccc
Q psy8712 570 EKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 570 e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
+...++.|+..++......|..+.
T Consensus 566 ~~~~~r~i~~~~~~~~~~~p~~~~ 589 (661)
T 2d7d_A 566 ETKRRREQQERFNEEHGITPKTIN 589 (661)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHHhhhhcCCCCCchh
Confidence 667778888888877776665544
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-15 Score=173.07 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=73.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh------------ccCCcEEEECchhhHHHHh
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL------------SSGVDIVVGTPGRMEDLIS 353 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L------------~~~~dIlV~TP~rL~~ll~ 353 (651)
.+|||+| ..|+.|..+.+.++.. .+++.+..|+.......... ....+|+|+|++.+.....
T Consensus 288 ~~LIV~P-~sll~qW~~E~~~~~p-----~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~ 361 (800)
T 3mwy_W 288 PHIIVVP-LSTMPAWLDTFEKWAP-----DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA 361 (800)
T ss_dssp CEEEECC-TTTHHHHHHHHHHHST-----TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH
T ss_pred CEEEEEC-chHHHHHHHHHHHHCC-----CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH
Confidence 4799999 6788888888888763 47777777776654443321 2357899999999865332
Q ss_pred CCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 354 GGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 354 ~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
.+...+..+|||||||++-+ ........+..++. ...+++|||.
T Consensus 362 --~l~~~~w~~vIvDEaH~lkn--~~s~~~~~l~~l~~-------~~rl~LTgTP 405 (800)
T 3mwy_W 362 --ELGSIKWQFMAVDEAHRLKN--AESSLYESLNSFKV-------ANRMLITGTP 405 (800)
T ss_dssp --HHHTSEEEEEEETTGGGGCC--SSSHHHHHHTTSEE-------EEEEEECSCC
T ss_pred --HHhcCCcceeehhhhhhhcC--chhHHHHHHHHhhh-------ccEEEeeCCc
Confidence 12223568999999999854 23345555666643 5678999997
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=167.29 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=71.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHH--HH-Hhcc-----CCcEEEECchhhHHHHhCCCc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQ--MS-VLSS-----GVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q--~~-~L~~-----~~dIlV~TP~rL~~ll~~~~l 357 (651)
++|||+|+ .|+.|..+++.++... .+.+..+.+|...... .. .+.. ..+|+|+|++.+.... ..+
T Consensus 116 ~~LiV~P~-sll~qW~~E~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l 188 (644)
T 1z3i_X 116 KVIVVSPS-SLVRNWYNEVGKWLGG----RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVL 188 (644)
T ss_dssp CEEEEECH-HHHHHHHHHHHHHHGG----GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTT
T ss_pred cEEEEecH-HHHHHHHHHHHHHcCC----CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHh
Confidence 68999997 8899999999888653 2667777777643322 11 1111 4789999999886543 233
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
......+||+||||++-+.. ......+..++. ...+++|||.
T Consensus 189 ~~~~~~~vI~DEaH~ikn~~--~~~~~al~~l~~-------~~rl~LTgTP 230 (644)
T 1z3i_X 189 HKGKVGLVICDEGHRLKNSD--NQTYLALNSMNA-------QRRVLISGTP 230 (644)
T ss_dssp TTSCCCEEEETTGGGCCTTC--HHHHHHHHHHCC-------SEEEEECSSC
T ss_pred hcCCccEEEEECceecCChh--hHHHHHHHhccc-------CcEEEEecCc
Confidence 44577899999999985432 223333344433 4678999996
|
| >2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-16 Score=154.53 Aligned_cols=149 Identities=21% Similarity=0.274 Sum_probs=118.2
Q ss_pred eeeeccccccccccCCCCcccccc--cccccccccccccccCCceeEEEEEecc---CCceeeccccccccc-------c
Q psy8712 89 WILSVWDRDTAMAITPEGLRCQSR--EQKEWHGCRANKGVYGRGKYYYEATVTD---EGLCRVGWSTSQAVR-------D 156 (651)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~-------~ 156 (651)
+.|+.+++...+.+++|+..+-.+ ....|...+++.|++ +|||||||+|.+ .+-+++||++....+ .
T Consensus 33 ~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~-sGrhYWEV~v~~~~~~~~w~vGV~~~~~~r~~~g~~~~ 111 (212)
T 2jk9_A 33 HSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYT-RGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTL 111 (212)
T ss_dssp TSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBC-SSEEEEEEECCGGGCTTCCEEEEECTTSCCEEESSCCC
T ss_pred cccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCcc-CCeEEEEEEEecccCCCcEEEEEEcCCccccccCcccc
Confidence 556667777777777765321111 234688899999997 799999999994 678999999998875 2
Q ss_pred CCCCCCCCCcCC-CCccCCCcccC---------ccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccC
Q psy8712 157 LGTDRFGFGFGG-TGKKSNNKQFD---------NYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAF 226 (651)
Q Consensus 157 ~g~~~~~~~~gg-~~~ks~~~~~~---------~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~ 226 (651)
+|.+..+|+|.+ .|++.|+.+.. .||+.|..+|+|||+||.+.|+|+|.+||+.+|.+|.-. ..+++
T Consensus 112 ~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~aF~~~---~~~~l 188 (212)
T 2jk9_A 112 VGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGL---KGKKL 188 (212)
T ss_dssp TTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCC---TTCCB
T ss_pred cccCCCcEeeECCCCcEEECCcccCccccCcccccCCcCCCCCEEEEEEECCCCEEEEEECCEEeEEEeccC---CCCEE
Confidence 699999999986 66666665432 267889999999999999999999999999999999853 46799
Q ss_pred cchhhcc--cccccccc
Q psy8712 227 YPAVVLK--NAEMSFNF 241 (651)
Q Consensus 227 ~p~~~~k--~~~~~~~f 241 (651)
||++.+. |+++.++|
T Consensus 189 ~P~f~l~~g~~~v~l~~ 205 (212)
T 2jk9_A 189 YPVVSAVWGHCEIRMRY 205 (212)
T ss_dssp EEEEEECCTTCEEEEEE
T ss_pred eeEEEEEcCCcEEEEEE
Confidence 9999984 77888777
|
| >3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-15 Score=148.47 Aligned_cols=150 Identities=25% Similarity=0.355 Sum_probs=118.5
Q ss_pred ceeeeccccccccccCCCCcccccc-cccccccccccccccCCceeEEEEEeccC---Cceeeccccccccc-------c
Q psy8712 88 TWILSVWDRDTAMAITPEGLRCQSR-EQKEWHGCRANKGVYGRGKYYYEATVTDE---GLCRVGWSTSQAVR-------D 156 (651)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~-------~ 156 (651)
.+.|+..+....+.+++|+...... ....|...+++.|++ +|+|||||+|.+. +.+++||++....+ .
T Consensus 43 ~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~-sGrhYWEV~v~~~~~g~~~~vGv~~~~~~r~~~g~~~~ 121 (217)
T 3emw_A 43 RHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYS-RGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAAL 121 (217)
T ss_dssp HTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBS-SSEEEEEEECCGGGCTTCCEEEEECTTSCCEESSSCCC
T ss_pred ceEeCcccCCCCEEECCCCeEEEECccCCCCCEEEeCCCcc-CccEEEEEEEcccCCCCceeEEEEcCccccccCCcccc
Confidence 4566777777777777776644322 123477889999987 7999999999875 58999999988763 4
Q ss_pred CCCCCCCCCcC-CCCccCCCcc---cCccC-----cccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCc
Q psy8712 157 LGTDRFGFGFG-GTGKKSNNKQ---FDNYG-----EAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFY 227 (651)
Q Consensus 157 ~g~~~~~~~~g-g~~~ks~~~~---~~~~g-----~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~ 227 (651)
+|.+..||+|. +.|++.|+.. +..|+ +.|..+|+|||+||.+.|+|+|.+||+.+|.||.- +..+++|
T Consensus 122 lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~aF~~---~~~~~Ly 198 (217)
T 3emw_A 122 LGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRG---LKGRTLY 198 (217)
T ss_dssp TTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECC---CTTCCBE
T ss_pred ccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCCCEEEEEECCeEeEEEEEC---CCCCEEE
Confidence 89999999987 5777777764 34786 46899999999999999999999999999999985 3467999
Q ss_pred chhhccc--ccccccc
Q psy8712 228 PAVVLKN--AEMSFNF 241 (651)
Q Consensus 228 p~~~~k~--~~~~~~f 241 (651)
|++.+.. +++++.|
T Consensus 199 P~~sl~~g~~~v~l~~ 214 (217)
T 3emw_A 199 PAVSAVWGQCQVRIRY 214 (217)
T ss_dssp EEEEECSTTCEEEEEE
T ss_pred EEEEeccCCcEEEEEe
Confidence 9998864 5655554
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-14 Score=135.87 Aligned_cols=137 Identities=23% Similarity=0.362 Sum_probs=98.8
Q ss_pred HHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE--eCcchHHHHHHHhh
Q psy8712 382 IDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK--IDPQQDETWGRLRS 459 (651)
Q Consensus 382 i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~ 459 (651)
+..+++..+ ..++|.|..|.. .+..+...+.... +....+. .+..++......++
T Consensus 25 L~~ll~~~~-------~~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 25 LCNIYGSIT-------IGQAIIFCQTRR--NAKWLTVEMIQDG--------------HQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp HHHHHTTSC-------CSEEEEECSCHH--HHHHHHHHHHTTT--------------CCEEEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhCC-------CCCEEEEECCHH--HHHHHHHHHHHcC--------------CcEEEEeCCCCHHHHHHHHHHHH
Confidence 455555543 258999999874 5666666654321 1111111 12233334444455
Q ss_pred ccccceeeccccccCCCCCCCCCEEEEeCCC------CChhhhhhhcCccccCCCceEEEEeeeCCcccccccccccccc
Q psy8712 460 HIQTDGVHARDNARPGIDISGLPFIINMTLP------DDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATR 533 (651)
Q Consensus 460 ~~~~~~l~~td~~~rGIDip~v~~VIn~dlP------~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~ 533 (651)
.....++.+|+.+.+|+|+|++++|||||+| .+..+|+||+||+||.|+.|.+++|+++
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~--------------- 146 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV--------------- 146 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECG---------------
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEcc---------------
Confidence 5678899999999999999999999999999 9999999999999999999999999987
Q ss_pred CCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccc
Q psy8712 534 GRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDK 591 (651)
Q Consensus 534 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~ 591 (651)
++...++.|++.++..+.+++..
T Consensus 147 -----------------------------------~~~~~~~~i~~~~~~~~~~~~~~ 169 (175)
T 2rb4_A 147 -----------------------------------DELPSLMKIQDHFNSSIKQLNAE 169 (175)
T ss_dssp -----------------------------------GGHHHHHHHHHHHTCCCEEECSS
T ss_pred -----------------------------------chHHHHHHHHHHhcCcccccCCc
Confidence 56788999999999998877643
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.1e-15 Score=142.35 Aligned_cols=57 Identities=35% Similarity=0.680 Sum_probs=50.7
Q ss_pred ccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 462 QTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 462 ~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
...++.+|+.+.+|+|+|++++|||||+|.++++|+||+||+||.|+.|.+++|+++
T Consensus 104 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~ 160 (191)
T 2p6n_A 104 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINK 160 (191)
T ss_dssp SCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECT
T ss_pred CCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcC
Confidence 456677889999999999999999999999999999999999999999999999987
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=134.66 Aligned_cols=125 Identities=31% Similarity=0.378 Sum_probs=96.0
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEe--CcchHHHHHHHhhccccceeeccccccCCC
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKI--DPQQDETWGRLRSHIQTDGVHARDNARPGI 476 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~td~~~rGI 476 (651)
.++|.|+.|.. .+..+.+.+.... +....++- +..++......+......++.+|+.+.+|+
T Consensus 36 ~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gl 99 (163)
T 2hjv_A 36 DSCIIFCRTKE--HVNQLTDELDDLG--------------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGI 99 (163)
T ss_dssp SSEEEECSSHH--HHHHHHHHHHHTT--------------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTC
T ss_pred CcEEEEECCHH--HHHHHHHHHHHcC--------------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 47899988864 5666666554321 11111111 122333344445556788999999999999
Q ss_pred CCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhc
Q psy8712 477 DISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLL 556 (651)
Q Consensus 477 Dip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 556 (651)
|+|++++|||||+|.++.+|+||+||+||.|+.|.+++|+++
T Consensus 100 d~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-------------------------------------- 141 (163)
T 2hjv_A 100 DIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTA-------------------------------------- 141 (163)
T ss_dssp CCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECG--------------------------------------
T ss_pred chhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecH--------------------------------------
Confidence 999999999999999999999999999999999999999987
Q ss_pred cccccCCcccchhHHHHHHHHHHHhcCcccccc
Q psy8712 557 SGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVD 589 (651)
Q Consensus 557 ~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~ 589 (651)
.|...+++|++.++.+++.++
T Consensus 142 ------------~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 142 ------------FEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp ------------GGHHHHHHHHHHHTSCCEECC
T ss_pred ------------HHHHHHHHHHHHHCCCcCccC
Confidence 578889999999999887654
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=163.90 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=64.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH---------------------------------HHHH-
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV---------------------------------KDQM- 331 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~---------------------------------~~q~- 331 (651)
+++|++||++|+.|+.+.+..+.+..+ +++.++.|..+. ....
T Consensus 49 ~v~i~~pt~~l~~q~~~~~~~l~~~~~---~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~ 125 (551)
T 3crv_A 49 KVLFVVRTHNEFYPIYRDLTKIREKRN---ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVK 125 (551)
T ss_dssp EEEEEESSGGGHHHHHHHHTTCCCSSC---CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhhhcC---ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHH
Confidence 799999999999999999988876654 788777764321 1111
Q ss_pred -----------------HHhccCCcEEEECchhhHHHHhCCCccc-CCcceEeeccchhhhh
Q psy8712 332 -----------------SVLSSGVDIVVGTPGRMEDLISGGHLSL-THCRFFVLDEADGLLK 375 (651)
Q Consensus 332 -----------------~~L~~~~dIlV~TP~rL~~ll~~~~l~l-~~l~~lViDEaD~ll~ 375 (651)
+.+...+||||+|+..|.+...+..+.+ ....++||||||.|.+
T Consensus 126 ~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 126 KLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 2233578999999999988654443433 4678999999999987
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-14 Score=132.34 Aligned_cols=140 Identities=24% Similarity=0.385 Sum_probs=99.8
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE--eCcchHHHHHHHh
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK--IDPQQDETWGRLR 458 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~ 458 (651)
.+..+++..+. .++|.|..|.. .+..+...+.... +.-..+. .+..++......+
T Consensus 20 ~l~~ll~~~~~-------~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~~~~~~~~~~r~~~~~~f 76 (165)
T 1fuk_A 20 CLTDLYDSISV-------TQAVIFCNTRR--KVEELTTKLRNDK--------------FTVSAIYSDLPQQERDTIMKEF 76 (165)
T ss_dssp HHHHHHHHTTC-------SCEEEEESSHH--HHHHHHHHHHHTT--------------CCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CCEEEEECCHH--HHHHHHHHHHHcC--------------CCEEEEECCCCHHHHHHHHHHH
Confidence 35556665543 58899988864 5666666654321 1111111 1222333344445
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccC
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCS 538 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~ 538 (651)
+.....++.+|+.+.+|+|+|++++||+||+|.+..+|+||+||+||.|+.|.|++|+++
T Consensus 77 ~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~-------------------- 136 (165)
T 1fuk_A 77 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-------------------- 136 (165)
T ss_dssp HTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEET--------------------
T ss_pred HcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcc--------------------
Confidence 566778999999999999999999999999999999999999999999999999999997
Q ss_pred CcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccccc
Q psy8712 539 NTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 539 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
+|...++.+++.++.+++.++.++.
T Consensus 137 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 137 ------------------------------EDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp ------------------------------TTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred ------------------------------hHHHHHHHHHHHHccCccccCccHH
Confidence 5677888999999999988876543
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=136.22 Aligned_cols=141 Identities=19% Similarity=0.361 Sum_probs=103.4
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE--eCcchHHHHHHHh
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK--IDPQQDETWGRLR 458 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~ 458 (651)
.+..+++..+. .++|.|+.|.. .+..+...+.... +....++ .+..++......+
T Consensus 21 ~L~~ll~~~~~-------~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~~hg~~~~~~r~~~~~~f 77 (172)
T 1t5i_A 21 KLFDLLDVLEF-------NQVVIFVKSVQ--RCIALAQLLVEQN--------------FPAIAIHRGMPQEERLSRYQQF 77 (172)
T ss_dssp HHHHHHHHSCC-------SSEEEECSSHH--HHHHHHHHHHHTT--------------CCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CcEEEEECCHH--HHHHHHHHHHhcC--------------CCEEEEECCCCHHHHHHHHHHH
Confidence 35556665543 58899998864 5666666654321 1111111 1223333444445
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccC
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCS 538 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~ 538 (651)
......++.+|+.+.+|+|+|++++|||||+|.++.+|+||+||+||.|+.|.+++|+++.
T Consensus 78 ~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~------------------- 138 (172)
T 1t5i_A 78 KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE------------------- 138 (172)
T ss_dssp HTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH-------------------
T ss_pred HCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcCh-------------------
Confidence 5667889999999999999999999999999999999999999999999999999999872
Q ss_pred CcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccccc
Q psy8712 539 NTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 539 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
++...++.|++.++.++.+++..+.
T Consensus 139 ------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 139 ------------------------------NDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp ------------------------------HHHHHHHHHHHHHCCCEEECC----
T ss_pred ------------------------------hHHHHHHHHHHHHhcchhhCChhhc
Confidence 4678899999999999998876543
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=166.32 Aligned_cols=186 Identities=17% Similarity=0.142 Sum_probs=114.0
Q ss_pred EEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhc--cchHHHH----HHHh---cCC
Q psy8712 320 LIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ--GYGNLID----RMHK---QIP 390 (651)
Q Consensus 320 ~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~--gf~~~i~----~il~---~lp 390 (651)
.+.|+.++..+...+..+ +||++|++++... .+|||||+|++++. ++..... .+.. .+|
T Consensus 296 ~~~Gie~y~~~~~~~~~g-----~tp~~LlDyl~~~-------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp 363 (664)
T 1c4o_A 296 TCPGVENYARYFTGKAPG-----EPPYTLLDYFPED-------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLP 363 (664)
T ss_dssp CCTTGGGGHHHHHTCCTT-----SCCCCGGGGSCTT-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred ccCchHHHHHHHhcccCC-----CCchHHHHHHhhc-------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccch
Confidence 345666676666655555 8999999987543 38999999998752 1111111 1111 111
Q ss_pred Ccc---C------CCCceeEEEEeeccChHHHHHHHHHh---------ccCCeEEEccCCCCc-----------cCceEE
Q psy8712 391 KIT---S------DGKRLQMIVCSATLHDFDVKKMAERL---------MYFPTWVDLKGEDAV-----------PETVHH 441 (651)
Q Consensus 391 ~~~---~------~~~~~Q~l~~SATl~~~~v~~l~~~~---------l~~p~~i~~~~~~~~-----------~~~i~~ 441 (651)
... + .....|++++|||+++ ........+ +.+|. +.+...... ...-.+
T Consensus 364 ~~l~~~~l~~~e~~~~~~q~i~~SAT~~~-~~~~~~~~~~~~~~r~~~l~~p~-i~v~~~~~~~~~Ll~~l~~~~~~~~~ 441 (664)
T 1c4o_A 364 SALDNRPLRFEEFLERVSQVVFVSATPGP-FELAHSGRVVEQIIRPTGLLDPL-VRVKPTENQILDLMEGIRERAARGER 441 (664)
T ss_dssp GGGGSSCCCHHHHHHTCSEEEEEESSCCH-HHHHHCSEEEEECSCTTCCCCCE-EEEECSTTHHHHHHHHHHHHHHTTCE
T ss_pred hhhhcCcccHHHHHhhcCCEEEEecCCCH-HHHHhhhCeeeeeeccCCCCCCe-EEEecccchHHHHHHHHHHHHhcCCE
Confidence 100 0 0014799999999985 222211111 11222 112111100 001135
Q ss_pred EEEEeCcchHHH--HHHH-------------------------hhccccceeeccccccCCCCCCCCCEEEEeCC-----
Q psy8712 442 VVVKIDPQQDET--WGRL-------------------------RSHIQTDGVHARDNARPGIDISGLPFIINMTL----- 489 (651)
Q Consensus 442 ~~~~~~~~~~~~--~~~l-------------------------~~~~~~~~l~~td~~~rGIDip~v~~VIn~dl----- 489 (651)
++++|++..... ...+ ++.....++++|+.+.+|+|+|+|++||++|.
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~ 521 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGF 521 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCC
Confidence 677777654221 1111 22235667889999999999999999999998
Q ss_pred CCChhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 490 PDDKANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 490 P~s~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
|.+..+|+||+|||||.+ .|.+++++++.+
T Consensus 522 p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~ 551 (664)
T 1c4o_A 522 LRSERSLIQTIGRAARNA-RGEVWLYADRVS 551 (664)
T ss_dssp GGSHHHHHHHHGGGTTST-TCEEEEECSSCC
T ss_pred CCCHHHHHHHHCccCcCC-CCEEEEEEcCCC
Confidence 999999999999999995 899999998743
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.8e-14 Score=138.37 Aligned_cols=126 Identities=23% Similarity=0.316 Sum_probs=94.4
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEe--CcchHHHHHHHhhccccceeeccccccCCC
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKI--DPQQDETWGRLRSHIQTDGVHARDNARPGI 476 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~td~~~rGI 476 (651)
.++|.|..|.. .+..+...+.... +....++- +..++......++.....++.+|+.+.+||
T Consensus 32 ~~~lVF~~~~~--~~~~l~~~L~~~~--------------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gi 95 (212)
T 3eaq_A 32 DRAMVFTRTKA--ETEEIAQGLLRLG--------------HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGL 95 (212)
T ss_dssp SCEEEECSSHH--HHHHHHHHHHHHT--------------CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSS
T ss_pred CeEEEEeCCHH--HHHHHHHHHHHcC--------------CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCC
Confidence 48889988864 5666666553321 11112222 223334444445566788999999999999
Q ss_pred CCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhc
Q psy8712 477 DISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLL 556 (651)
Q Consensus 477 Dip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 556 (651)
|+|++++|||||+|.+..+|+||+||+||.|+.|.|++|+++
T Consensus 96 di~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~-------------------------------------- 137 (212)
T 3eaq_A 96 DIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-------------------------------------- 137 (212)
T ss_dssp SCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG--------------------------------------
T ss_pred CCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch--------------------------------------
Confidence 999999999999999999999999999999999999999988
Q ss_pred cccccCCcccchhHHHHHHHHHHHhcCccccccc
Q psy8712 557 SGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDD 590 (651)
Q Consensus 557 ~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~ 590 (651)
+|...++.|++.++..+..++.
T Consensus 138 ------------~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 138 ------------RERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp ------------GGHHHHHHHHHHHSSCCEECCC
T ss_pred ------------hHHHHHHHHHHHhcCcCeecCC
Confidence 5778888999999988876653
|
| >2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=144.98 Aligned_cols=150 Identities=24% Similarity=0.360 Sum_probs=115.4
Q ss_pred eeeeccccccccccCCCCcccccc-cccccccccccccccCCceeEEEEEecc---CCceeecccccccc-------ccC
Q psy8712 89 WILSVWDRDTAMAITPEGLRCQSR-EQKEWHGCRANKGVYGRGKYYYEATVTD---EGLCRVGWSTSQAV-------RDL 157 (651)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~-------~~~ 157 (651)
+.|+.++....+.+++|+...... ....|...+++.|++ +|||||||+|.+ .+-+++||++.... ..+
T Consensus 41 ~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~-sGrhYWEV~V~~~~~~~~w~vGV~~~s~~~~r~~~~~~~ 119 (226)
T 2afj_A 41 HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYS-RGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALL 119 (226)
T ss_dssp HSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCC-CSEEEEEEECCCCSSSCCCEEEEEESSCCCSSCSSSCCC
T ss_pred cEEccccCCCCEEEeCCCEEEEECCCCCCcCeEEECCCcc-CCEEEEEEEEeccCCCCCEEEEecCCccccccccccccc
Confidence 456666677777777776532110 112355788888887 799999999998 67899999998774 227
Q ss_pred CCCCCCCCcC-CCCccCCCcc---cCcc-----CcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcc
Q psy8712 158 GTDRFGFGFG-GTGKKSNNKQ---FDNY-----GEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYP 228 (651)
Q Consensus 158 g~~~~~~~~g-g~~~ks~~~~---~~~~-----g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p 228 (651)
|.+..+|+|+ +.|+..|+.. +..| +..|..+|+|||+||.+.|+|+|.+||+.+|.+|.. +..+++||
T Consensus 120 G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~aF~~---~~~~~L~P 196 (226)
T 2afj_A 120 GSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRG---LKGRTLYP 196 (226)
T ss_dssp CCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHH---HHHHCCEE
T ss_pred cCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCCCEEEEEECCeEeEEEEEc---CCCCEEEE
Confidence 9999999998 4777777766 3456 456899999999999999999999999999999875 44689999
Q ss_pred hhhcc--ccccccccC
Q psy8712 229 AVVLK--NAEMSFNFG 242 (651)
Q Consensus 229 ~~~~k--~~~~~~~f~ 242 (651)
++++. ++++.++|-
T Consensus 197 ~f~l~~g~~~v~l~~~ 212 (226)
T 2afj_A 197 SVSAVWGQCQVRIRYM 212 (226)
T ss_dssp EEEECCTTSCCEEEEE
T ss_pred EEEcccCCCEEEEEEc
Confidence 99874 456666653
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=132.99 Aligned_cols=118 Identities=25% Similarity=0.291 Sum_probs=75.2
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHHhhc
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSH 460 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 460 (651)
.+..++..... ..++|.|+.|.. .+..+...+..... .+..+.-..+..++......+..
T Consensus 35 ~L~~ll~~~~~------~~k~lVF~~~~~--~~~~l~~~L~~~g~------------~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 35 FLLDLLNATGK------DSLTLVFVETKK--GADSLEDFLYHEGY------------ACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp HHHHHHHHC-C------CSCEEEEESCHH--HHHHHHHHHHHTTC------------CEEEEC--------CHHHHHHHH
T ss_pred HHHHHHHhcCC------CCeEEEEECCHH--HHHHHHHHHHHcCC------------ceEEEeCCCCHHHHHHHHHHHHc
Confidence 35555555432 468999999874 56666665533210 01100011122222233333445
Q ss_pred cccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 461 IQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 461 ~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
....++.+|+.+.+|+|+|++++||+||+|.++.+|+||+||+||.|+.|.|++|+++
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~ 152 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 152 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECG
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEch
Confidence 5677999999999999999999999999999999999999999999999999999987
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=141.12 Aligned_cols=126 Identities=22% Similarity=0.333 Sum_probs=92.1
Q ss_pred eeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEE--eCcchHHHHHHHhhccccceeeccccccCCC
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVK--IDPQQDETWGRLRSHIQTDGVHARDNARPGI 476 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~td~~~rGI 476 (651)
.++|.|..|.. .+..+...+.... +....++ .+..++......++.....++++|+.+.+||
T Consensus 29 ~~~LVF~~t~~--~~~~l~~~L~~~g--------------~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 29 DRAMVFTRTKA--ETEEIAQGLLRLG--------------HPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSEEEECSSHH--HHHHHHHHHHTTT--------------CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred CCEEEEECCHH--HHHHHHHHHHhCC--------------CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 48899988864 6667776654321 1112222 2233344444445556788999999999999
Q ss_pred CCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCCcccccccCCCCcchhhc
Q psy8712 477 DISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLL 556 (651)
Q Consensus 477 Dip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 556 (651)
|+|++++|||||+|.+.++|+||+||+||.|+.|.|++|+++
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~-------------------------------------- 134 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-------------------------------------- 134 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECS--------------------------------------
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeCh--------------------------------------
Confidence 999999999999999999999999999999999999999998
Q ss_pred cccccCCcccchhHHHHHHHHHHHhcCccccccc
Q psy8712 557 SGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDD 590 (651)
Q Consensus 557 ~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~ 590 (651)
+|...++.|++.++..+..++.
T Consensus 135 ------------~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 135 ------------RERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp ------------STHHHHHHHHHHHTCCCEECCC
T ss_pred ------------HHHHHHHHHHHHhCCcceEeCC
Confidence 5677888899999888776653
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-13 Score=154.22 Aligned_cols=43 Identities=26% Similarity=0.210 Sum_probs=33.2
Q ss_pred HcCCCCCcHHHHhhHHh----HhcCCceEeeecCCCCccceeehhhHH
Q psy8712 19 EMDWLLPTDVQAEAIPL----ILGGGDVLMAAETGSGKTGAFCLPIIQ 62 (651)
Q Consensus 19 ~~~~~~pt~iQ~~aip~----il~g~dvl~~a~TGsGKT~af~lp~l~ 62 (651)
-+|| .|+|+|.+++.. +..|+|+++.||||||||+||++|+++
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~ 49 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ 49 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 3577 899999998654 568999999999999999999999864
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-13 Score=130.51 Aligned_cols=61 Identities=39% Similarity=0.601 Sum_probs=56.8
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
+......++.+|+.+.+|+|+|++++|||||+|.+..+|+||+||+||.|+.|.+++|+.+
T Consensus 76 f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~ 136 (170)
T 2yjt_D 76 LTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA 136 (170)
Confidence 3445677899999999999999999999999999999999999999999999999999987
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.5e-11 Score=135.70 Aligned_cols=43 Identities=30% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCcHHHHhhHH----hHhcCCceEeeecCCCCccceeehhhHHHHHH
Q psy8712 24 LPTDVQAEAIP----LILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66 (651)
Q Consensus 24 ~pt~iQ~~aip----~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~ 66 (651)
.|.|.|.+.+. .+..|+|+++.||||||||+||++|+++.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~ 49 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE 49 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 58999999875 45689999999999999999999999987644
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.9e-09 Score=118.81 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=34.4
Q ss_pred cHHHHhhHHhHhcCCceEeeecCCCCcc--ceeehhhHH
Q psy8712 26 TDVQAEAIPLILGGGDVLMAAETGSGKT--GAFCLPIIQ 62 (651)
Q Consensus 26 t~iQ~~aip~il~g~dvl~~a~TGsGKT--~af~lp~l~ 62 (651)
++.|.+||+.++.++++++.+++||||| .+++++.++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999999999 778888776
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-06 Score=90.10 Aligned_cols=66 Identities=15% Similarity=0.072 Sum_probs=40.8
Q ss_pred HHHHHhhccccc-eeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceE--EEEeeeC
Q psy8712 453 TWGRLRSHIQTD-GVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGL--AISLVST 518 (651)
Q Consensus 453 ~~~~l~~~~~~~-~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~--ai~lv~~ 518 (651)
....+..+.... .+.+++...+|||++++++||+||+|.++..|+||+||++|.|+.+. ++.|++.
T Consensus 155 ~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 155 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp HHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred HHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeC
Confidence 334444442443 68899999999999999999999999999999999999999998765 4667765
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0038 Score=70.27 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=29.4
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccce
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a 55 (651)
.+++.|.+|+..++.++-+++.++.|||||..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~ 220 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT 220 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH
Confidence 46899999999999999999999999999943
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0044 Score=70.55 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=29.2
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccce
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a 55 (651)
..+++-|.+|+..++.+.-+++.||+|||||..
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~ 211 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT 211 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH
Confidence 356899999999999888899999999999954
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0038 Score=68.24 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=30.7
Q ss_pred HHHcCCCCCcHHHHhhHHhHhcC-----CceEeeecCCCCccc
Q psy8712 17 VEEMDWLLPTDVQAEAIPLILGG-----GDVLMAAETGSGKTG 54 (651)
Q Consensus 17 l~~~~~~~pt~iQ~~aip~il~g-----~dvl~~a~TGsGKT~ 54 (651)
..-+.|..+++-|.+|+..++.. +.+++.|+.|||||.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ 60 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATT 60 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHH
Confidence 34578889999999999987643 489999999999993
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0017 Score=74.16 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.7
Q ss_pred CCcHHHHhhHHhHhcCCc-eEeeecCCCCccce
Q psy8712 24 LPTDVQAEAIPLILGGGD-VLMAAETGSGKTGA 55 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a 55 (651)
.+.+-|.+||-.+|..+| .|+++|.|||||-+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t 221 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT 221 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH
Confidence 457899999999998776 58899999999965
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.013 Score=68.61 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=29.0
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccce
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a 55 (651)
..+++-|.+|+..++.+.-+++.||.|||||..
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~ 391 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT 391 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 346799999999999887789999999999954
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0082 Score=70.14 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=28.8
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccce
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a 55 (651)
.+++-|.+|+..++.++-+++.||+|||||..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t 387 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT 387 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH
Confidence 46899999999999888889999999999964
|
| >2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.039 Score=52.72 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=53.3
Q ss_pred ccccccccccccCCceeEEEEEeccCCceeecccccccc----ccCCCCCCCCCcCCCC---ccCCCcccCccCcccCCC
Q psy8712 116 EWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAV----RDLGTDRFGFGFGGTG---KKSNNKQFDNYGEAFGMH 188 (651)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~gg~~---~ks~~~~~~~~g~~~~~~ 188 (651)
.|...-+..|.+ +||+|+||.|.+.+-..+|-+..... ..+|.++.+|..+-.. ...++..-.-.- -...
T Consensus 49 ~~~~VLg~~~fs-SGrHYWEVev~~~~~w~vGV~~~si~Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~~~l~~--~~~~ 125 (188)
T 2vok_A 49 NYPMVLGAQRFS-SGKMYWEVDVTQKEAWDLGVCRDSVQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQTTLHI--QVPP 125 (188)
T ss_dssp SSSEEEBSCCBS-SSEEEEEEECTTCSCEEEEEEETTCCCSSCCCCSTTTTEEEEEEETTEEEECSSSCEEECC--SSCC
T ss_pred eeccccccCccc-CCCeEEEEEecCCceEEEEEeeCCcCCCCccccCCCCCEEEEEEECCEEEEEeCCccCEec--CCCC
Confidence 355556666666 79999999999887777776654322 2355555555443211 111111100000 1235
Q ss_pred cccccccccCCceeeeec
Q psy8712 189 DVIGCLLDLDNMTVAFTK 206 (651)
Q Consensus 189 d~ig~~~~~~~~~~~~~~ 206 (651)
..||.+||.+.|+|+|--
T Consensus 126 ~rVGVfLDye~G~lSFY~ 143 (188)
T 2vok_A 126 CQIGIFVDYEAGVVSFYN 143 (188)
T ss_dssp SEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEcCCCEEEEEE
Confidence 789999999999999974
|
| >3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.048 Score=51.97 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=60.1
Q ss_pred ccccccccccCCceeEEEEEeccCCceeeccccccc---------cccCCCCCCCCCcC-CCCccC---CCccc-CccCc
Q psy8712 118 HGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQA---------VRDLGTDRFGFGFG-GTGKKS---NNKQF-DNYGE 183 (651)
Q Consensus 118 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---------~~~~g~~~~~~~~g-g~~~ks---~~~~~-~~~g~ 183 (651)
...-+..|++ +||+|+||.|.+.+-..+|=+.... ...+|.++.+|..+ ..|+.. |+... ...+.
T Consensus 39 ~~VLG~~~ft-sGrHYWEVeV~~~~~W~vGV~~~~~~r~~~~~~~~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~ 117 (186)
T 3uv9_A 39 TGVLGSQSIT-SGKHYWEVDVSKKSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAP 117 (186)
T ss_dssp SCEECSSCBC-SSEEEEEEECTTCSCEEEEEESCSTTTTTTTHHHHTCCCGGGTEEEEEEETTTEEEEEECCCTTSTTSC
T ss_pred CcCcCCCCCC-CCCEEEEEEEcCCCcEEEEEEEEEecccccccCCCcccCCCCCEEEEEECCCCEEEEEeCCCccccCCC
Confidence 3455555665 7999999999998887887654322 22355555555433 111110 01000 00110
Q ss_pred ------ccCCCcccccccccCCceeeee---ccCcccccccccchhhhhccCcchhhc
Q psy8712 184 ------AFGMHDVIGCLLDLDNMTVAFT---KNGQHLGLAFNISQQLKNSAFYPAVVL 232 (651)
Q Consensus 184 ------~~~~~d~ig~~~~~~~~~~~~~---~ng~~~g~af~~~~~~~~~~~~p~~~~ 232 (651)
.-...+.||.+||.+.|+|+|- ..+.+ =+.|.- .+. .+++||+.++
T Consensus 118 ~~~~l~~~~~p~rVGVfLDye~G~lSFYnv~d~~~l-I~tF~~-~~F-s~pL~P~F~~ 172 (186)
T 3uv9_A 118 FIVPLSVIICPDRVGVFVDYEACTVSFFNITNHGFL-IYKFSQ-CSF-SKPVFPYLNP 172 (186)
T ss_dssp EEEECCCSSCCSEEEEEEETTTTEEEEEETTTTTEE-EEEECS-CCC-SSCBEEEEEC
T ss_pred ccCcccccccCCEEEEEeecCCCEEEEEeCCCCceE-EEEeCC-cCC-CCCEEeEEEC
Confidence 1123468999999999999994 22432 122210 000 2567877764
|
| >2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.082 Score=50.55 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=51.0
Q ss_pred cccccccccccCCceeEEEEEeccCCceeeccccccccc----cCCCCCCCCCcCCC-Ccc---CCCcccCccCcccCCC
Q psy8712 117 WHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVR----DLGTDRFGFGFGGT-GKK---SNNKQFDNYGEAFGMH 188 (651)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~gg~-~~k---s~~~~~~~~g~~~~~~ 188 (651)
|...-+..+++ +||+|+||.|.+.+-..+|-+...... .+|.+..+|..+=. +.. .++....-.. -...
T Consensus 54 ~~~VLg~~~fs-sGrHYWEVev~~~~~w~vGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~~--~~~~ 130 (191)
T 2wl1_A 54 CIIVLGSPSFL-SGRRYWEVEVGDKTAWILGACKTSISRKGNMTLSPENGYWVVIMMKENEYQASSVPPTRLLI--KEPP 130 (191)
T ss_dssp SCCEEEECCBC-SSEEEEEEECTTCSCEEEEEEETTCCSSSCCCCCGGGTEEEEEEEETTEEEECCSSCEECCC--SSCC
T ss_pred cccccCccccc-CCCEEEEEEeCCCCEEEEEEeeCCcCCCCccccCCCCCEEEEEEeCCCEEEEEcCCCccCcc--ccCC
Confidence 44455556665 799999999999877777766543322 24444444433210 111 1111100010 1235
Q ss_pred cccccccccCCceeeeec
Q psy8712 189 DVIGCLLDLDNMTVAFTK 206 (651)
Q Consensus 189 d~ig~~~~~~~~~~~~~~ 206 (651)
..||.+||.+.|+|+|--
T Consensus 131 ~rVGVfLDye~G~lSFY~ 148 (191)
T 2wl1_A 131 KRVGIFVDYRVGSISFYN 148 (191)
T ss_dssp SEEEEEEETTTTEEEEEE
T ss_pred cEEEEEEEcCCCEEEEEE
Confidence 789999999999999973
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.34 Score=51.42 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=29.0
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhh
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~ 60 (651)
.|+|.|.+.+..+-..+-+++..+-+.|||.+.+.-+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~ 199 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFL 199 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHH
Confidence 6799999988877555678999999999997654433
|
| >2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.14 Score=49.35 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=50.3
Q ss_pred cccccccccccCCceeEEEEEeccCCceeeccccccccc----cCCCCCCCCCcCCC-CccC---CCcccCccCcccCCC
Q psy8712 117 WHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVR----DLGTDRFGFGFGGT-GKKS---NNKQFDNYGEAFGMH 188 (651)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~gg~-~~ks---~~~~~~~~g~~~~~~ 188 (651)
|...-+..+.+ +||+|+||.|.+.+-..+|-+...... .++.+..+|..+=. +... ++..-.-.. -...
T Consensus 51 ~~~VLg~~~fs-SGrHYWEVev~~~~~w~vGV~~~si~Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l~~--~~~~ 127 (201)
T 2fbe_A 51 ALCVLGTPRFT-SGRHYWEVDVGTSQVWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWV--SPQL 127 (201)
T ss_dssp SCEEEESCCBS-SSEEEEEEECTTCSEEEEEEEETTSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEECC--CTTC
T ss_pred ccceecCcccc-CCceEEEEEeCCCCEEEEEEeeCccCCCCcccccCCCCEEEEEEeCCCEEEEEcCCcccCcc--CCCC
Confidence 55555666666 799999999998877777766543322 23444444433211 1100 000000000 1235
Q ss_pred cccccccccCCceeeeec
Q psy8712 189 DVIGCLLDLDNMTVAFTK 206 (651)
Q Consensus 189 d~ig~~~~~~~~~~~~~~ 206 (651)
..||.+||.+.|+|+|--
T Consensus 128 ~rVGVfLDye~G~lSFY~ 145 (201)
T 2fbe_A 128 HRVGIFLDVGMRSIAFYN 145 (201)
T ss_dssp CEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEcCCCEEEEEe
Confidence 789999999999999964
|
| >3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.18 Score=48.24 Aligned_cols=87 Identities=17% Similarity=0.130 Sum_probs=48.2
Q ss_pred cccccccccccCCceeEEEEEeccCCceeecccccccc----ccCCCCCCCCCcCCCCccCCCcccCccCcc--c----C
Q psy8712 117 WHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAV----RDLGTDRFGFGFGGTGKKSNNKQFDNYGEA--F----G 186 (651)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~gg~~~ks~~~~~~~~g~~--~----~ 186 (651)
|...-+..+.+ +||+|+||.|.+.+-..+|-+..... ..++..+.+|..+=.....+ ..+.+--++ . .
T Consensus 54 ~~~VLg~~~fs-sGrhYWEVev~~~~~W~lGV~~~s~~Rkg~~~~~~~~~~W~l~~~~~~~y-~~~~~~~~~~~l~~~~~ 131 (193)
T 3kb5_A 54 AVAVVAHQQLS-EGEHYWEVDVGDKPRWALGVIAAEAPRRGRLHAVPSQGLWLLGLREGKIL-EAHVEAKEPRALRSPER 131 (193)
T ss_dssp SCEEEBSCCBC-SSEEEEEEECTTCSSEEEEEEETTSCCSSSCCCSGGGTEEEEEEETTTEE-EECCSSSSCEECCCCSS
T ss_pred ccEEccCCccc-CCCEEEEEEeCcCceEEEEEeeCCcCcCCCcCCCCCCCEEEEEEeCCCEE-EEEeCCCccEEEeecCC
Confidence 44455566665 79999999999987666666553322 22333333443221100000 001110111 1 2
Q ss_pred CCcccccccccCCceeeee
Q psy8712 187 MHDVIGCLLDLDNMTVAFT 205 (651)
Q Consensus 187 ~~d~ig~~~~~~~~~~~~~ 205 (651)
.-..||.+||.+.|+|+|-
T Consensus 132 ~~~rVGVfLDye~G~lSFY 150 (193)
T 3kb5_A 132 RPTRIGLYLSFGDGVLSFY 150 (193)
T ss_dssp CCSEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEEcCCCEEEEE
Confidence 2467999999999999985
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.22 Score=56.39 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
..+++-|.+||.. ..+.++|.|+.|||||.+-
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHH
Confidence 4689999999973 4678999999999999543
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.88 Score=51.08 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=28.8
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccceeeh
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCL 58 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~l 58 (651)
.|+|.|...+..+-..+-+++..+-|+|||.+.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~ 197 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAI 197 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHH
Confidence 47999999988775667899999999999976543
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.69 E-value=3.2 Score=37.65 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=55.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.+++++-+..+.+.+...+ +.+..+.|+.+..+....+. ...+|+|+|. +-...+++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~ 101 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLG-------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDI 101 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCch
Confidence 4579999999999999999887763 78889999987665554442 3579999993 23345677
Q ss_pred CCcceEeecc
Q psy8712 360 THCRFFVLDE 369 (651)
Q Consensus 360 ~~l~~lViDE 369 (651)
.+++++|.-+
T Consensus 102 ~~~~~Vi~~~ 111 (163)
T 2hjv_A 102 ENISLVINYD 111 (163)
T ss_dssp SCCSEEEESS
T ss_pred hcCCEEEEeC
Confidence 8888888644
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.19 Score=54.23 Aligned_cols=44 Identities=18% Similarity=0.037 Sum_probs=33.3
Q ss_pred CCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHH
Q psy8712 252 KDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQII 305 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~ 305 (651)
+-.++.+..|+|||......+.. ...+|++||++++..+.+.+.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~----------~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF----------EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT----------TTCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc----------CCeEEEeCCHHHHHHHHHHhh
Confidence 34578999999999987654310 246999999999988877764
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.95 E-value=2.7 Score=38.64 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.++++..+..+.+.+...+ +.+..+.|+.+..+....+. ...+|+|+|. +-...+++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDG-------HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTT-------CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCc
Confidence 4589999999999999998887653 78889999988766554442 3579999994 23445678
Q ss_pred CCcceEeec
Q psy8712 360 THCRFFVLD 368 (651)
Q Consensus 360 ~~l~~lViD 368 (651)
..+.++|.-
T Consensus 101 ~~~~~Vi~~ 109 (175)
T 2rb4_A 101 KQVTIVVNF 109 (175)
T ss_dssp TTEEEEEES
T ss_pred ccCCEEEEe
Confidence 888888853
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=89.62 E-value=1.3 Score=40.56 Aligned_cols=74 Identities=12% Similarity=0.206 Sum_probs=54.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.++|++-+..+.+.++..+ +.+..+.|+.+..+....+. ...+|+|+|. .....++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d 95 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDK-------FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGID 95 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCC
Confidence 34589999999999999998887653 77888999988665554442 3579999993 2334567
Q ss_pred cCCcceEeecc
Q psy8712 359 LTHCRFFVLDE 369 (651)
Q Consensus 359 l~~l~~lViDE 369 (651)
+.+++++|.-+
T Consensus 96 ~~~~~~Vi~~~ 106 (165)
T 1fuk_A 96 VQQVSLVINYD 106 (165)
T ss_dssp CCSCSEEEESS
T ss_pred cccCCEEEEeC
Confidence 78888887644
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.59 E-value=1.2 Score=42.14 Aligned_cols=73 Identities=14% Similarity=0.276 Sum_probs=54.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
++++||.+++++-+..+.+.++..+ +++..+.|+.+..+....+. ...+|+|+|. .+. ..+++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi 120 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-------VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDF 120 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-------CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCc
Confidence 4579999999999999999987763 78888999987766554442 3589999993 333 34577
Q ss_pred CCcceEeecc
Q psy8712 360 THCRFFVLDE 369 (651)
Q Consensus 360 ~~l~~lViDE 369 (651)
.+++++|.-+
T Consensus 121 ~~v~~VI~~d 130 (191)
T 2p6n_A 121 PAIQHVINYD 130 (191)
T ss_dssp CCCSEEEESS
T ss_pred ccCCEEEEeC
Confidence 8888887643
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=89.50 E-value=0.42 Score=55.15 Aligned_cols=32 Identities=34% Similarity=0.409 Sum_probs=27.1
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
..++|-|.+||-. ..+.++|.|..|||||.+-
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL 41 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVL 41 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHH
Confidence 4689999999976 3678999999999999553
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.15 E-value=1 Score=46.38 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=18.7
Q ss_pred CCCCCCCeEEEecCCCCceeeee
Q psy8712 247 KHEPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 247 ~~~~~~~~i~~~~~gsGKT~~~~ 269 (651)
....+.+.+..+..|+|||.++-
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHH
Confidence 34577889999999999998644
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=88.25 E-value=1.6 Score=41.80 Aligned_cols=71 Identities=14% Similarity=0.289 Sum_probs=54.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.++|++-+..+.+.+...+ +.+..++|+.+..++...+. ...+|+|+|. +-...+++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi 97 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG-------HPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDI 97 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT-------CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC-------CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCC
Confidence 4589999999999999999887764 78889999988766655442 3578999993 33455677
Q ss_pred CCcceEee
Q psy8712 360 THCRFFVL 367 (651)
Q Consensus 360 ~~l~~lVi 367 (651)
.+++++|.
T Consensus 98 ~~v~~Vi~ 105 (212)
T 3eaq_A 98 PQVDLVVH 105 (212)
T ss_dssp CCBSEEEE
T ss_pred ccCcEEEE
Confidence 88888874
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=87.66 E-value=0.48 Score=54.05 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=26.3
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.+||-|.+||... ++.++|.|..|||||.+-
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l 32 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVI 32 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHH
Confidence 4799999999763 788999999999999644
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=87.29 E-value=1.5 Score=40.41 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.+++++-+..+.+.+...+ +.+..+.|+.+..+....+. ...+|+|+|. +....+++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~-------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi 97 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQN-------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDI 97 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcC-------CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcch
Confidence 4579999999999999999887753 78888999987766554442 3579999994 23345667
Q ss_pred CCcceEeecc
Q psy8712 360 THCRFFVLDE 369 (651)
Q Consensus 360 ~~l~~lViDE 369 (651)
..++++|.-+
T Consensus 98 ~~~~~Vi~~d 107 (172)
T 1t5i_A 98 ERVNIAFNYD 107 (172)
T ss_dssp GGCSEEEESS
T ss_pred hhCCEEEEEC
Confidence 7888888644
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=86.11 E-value=0.73 Score=45.89 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=18.5
Q ss_pred CCCCCCeEEEecCCCCceeeeec
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
.+++.+++..+..|+|||.++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHH
Confidence 35667899999999999997543
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.90 E-value=4.1 Score=37.99 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.++++.-+..+.+.++..+ +.+..+.|+.+..++...+ + ...+|||+|. +-...++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g-------~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gld 111 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG-------YACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLD 111 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT-------CCEEEEC--------CHHHHHHHHTSSSEEEEEC------------C
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC-------CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC------hhhcCCC
Confidence 35689999999999999999887653 7888888887654443333 2 3579999993 2233456
Q ss_pred cCCcceEeec
Q psy8712 359 LTHCRFFVLD 368 (651)
Q Consensus 359 l~~l~~lViD 368 (651)
+.++.++|.-
T Consensus 112 i~~~~~VI~~ 121 (185)
T 2jgn_A 112 ISNVKHVINF 121 (185)
T ss_dssp CCSBSEEEES
T ss_pred cccCCEEEEe
Confidence 7788888763
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=84.62 E-value=0.66 Score=44.58 Aligned_cols=19 Identities=0% Similarity=-0.251 Sum_probs=16.1
Q ss_pred CCCCeEEEecCCCCceeee
Q psy8712 250 PPKDYIAVCNAPKQNVKHS 268 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~ 268 (651)
.+..++..+..|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999963
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=83.67 E-value=2.5 Score=42.55 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=17.3
Q ss_pred CCCCCeEEEecCCCCceeeee
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSE 269 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~ 269 (651)
.++.+++..+..|+|||.++-
T Consensus 65 ~~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 456679999999999999653
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=83.66 E-value=10 Score=38.99 Aligned_cols=93 Identities=26% Similarity=0.509 Sum_probs=81.8
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcC--CceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQG 78 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g--~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~ 78 (651)
+.+|+++|++++++++|.++||..|+|+|.++|+.++.| +|++++||||||||++|++|+++.+.. ...
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---------~~~ 74 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP---------EDA 74 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---------TCC
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc---------CCC
Confidence 468999999999999999999999999999999999998 999999999999999999999986532 112
Q ss_pred CCccccccCceeeecccccccccc
Q psy8712 79 KAKAQVISPTWILSVWDRDTAMAI 102 (651)
Q Consensus 79 ~~~~~~~~p~~~l~~~~~~~~~~~ 102 (651)
..++++++|+++|..|..+....+
T Consensus 75 ~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 75 SPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccEEEECCCHHHHHHHHHHHHHH
Confidence 457899999999998888766554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=83.46 E-value=0.81 Score=41.46 Aligned_cols=57 Identities=9% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHH---HHHHHHhcc
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDV---KKMAERLMY 422 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v---~~l~~~~l~ 422 (651)
.+.++|||||.+.+.... ...+..+++.+... ...++++|...++..+ .++..++..
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~-----g~~~iiits~~~p~~l~~~~~L~SRl~~ 141 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNS-----GKGFLLLGSEYTPQQLVIREDLRTRMAY 141 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHH-----TCCEEEEEESSCTTTSSCCHHHHHHGGG
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHc-----CCcEEEEECCCCHHHccccHHHHHHHhc
Confidence 457899999999854432 44455555544321 2343455555443233 566666643
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=83.07 E-value=5.7 Score=36.95 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEee
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSA 406 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SA 406 (651)
.+-.+|||||+|.+... ....+..++...+. +..+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~------~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSK------SCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTT------TEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCC------CCeEEEEeC
Confidence 45679999999988542 23445555555443 455555543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=82.19 E-value=2.6 Score=43.50 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=18.9
Q ss_pred CCCCCCeEEEecCCCCceeeeec
Q psy8712 248 HEPPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 248 ~~~~~~~i~~~~~gsGKT~~~~~ 270 (651)
...+.+++..+..|+|||..+..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHH
Confidence 45677899999999999997543
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=81.50 E-value=1.2 Score=50.59 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.9
Q ss_pred CCcHHHHhhHHhHhc--CCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILG--GGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~--g~dvl~~a~TGsGKT~af 56 (651)
.+|.-|++|+..++. .+-.++.|.-|.|||.+-
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~l 209 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALA 209 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHH
Confidence 568899999988875 345788899999999443
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=81.36 E-value=1.1 Score=54.99 Aligned_cols=31 Identities=48% Similarity=0.517 Sum_probs=27.0
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.+|+-|.++|-.- +++++|.|.-|||||.+-
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl 40 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVL 40 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHH
Confidence 5799999999765 889999999999999553
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=81.29 E-value=4 Score=46.38 Aligned_cols=78 Identities=10% Similarity=0.264 Sum_probs=60.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+.++||.++|+..|..+.+.++..+ +++..+.|+.+..+....+ + ...+|+|+|- +-...++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~g-------i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlD 510 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIG-------IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLD 510 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcC-------CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcc
Confidence 45699999999999999999888764 7777888887765555443 3 3589999994 3345567
Q ss_pred cCCcceEeeccchhh
Q psy8712 359 LTHCRFFVLDEADGL 373 (651)
Q Consensus 359 l~~l~~lViDEaD~l 373 (651)
+.+++++|+-|+|..
T Consensus 511 ip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 511 IPEVSLVAILDADKE 525 (661)
T ss_dssp CTTEEEEEETTTTCC
T ss_pred cCCCCEEEEeCcccc
Confidence 889999999998754
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=80.76 E-value=0.92 Score=41.97 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=21.8
Q ss_pred cHHHHhhHHhHh---------cCCceEeeecCCCCcc
Q psy8712 26 TDVQAEAIPLIL---------GGGDVLMAAETGSGKT 53 (651)
Q Consensus 26 t~iQ~~aip~il---------~g~dvl~~a~TGsGKT 53 (651)
++-|.+++..+. .|..+++.+|+|+|||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKT 52 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKT 52 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHH
Confidence 456666665543 4788999999999999
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=80.32 E-value=15 Score=38.21 Aligned_cols=93 Identities=25% Similarity=0.451 Sum_probs=81.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|++++++.++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+.. .....+
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~~ 107 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---------QVRETQ 107 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT---------TSCSCC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh---------ccCCce
Confidence 46999999999999999999999999999999999999999999999999999999999986532 112457
Q ss_pred cccccCceeeeccccccccccC
Q psy8712 82 AQVISPTWILSVWDRDTAMAIT 103 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~ 103 (651)
+++++|+++|..|..+....+.
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCcHHHHHHHHHHHHHHh
Confidence 9999999999998887665553
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.29 E-value=3.8 Score=41.65 Aligned_cols=71 Identities=13% Similarity=0.282 Sum_probs=54.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.++|++-+..+.+.+...+ +.+..++|+.+..++...+. ...+|+|+|. +....+++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g-------~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi 94 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLG-------HPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDI 94 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTT-------CCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC-------CCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccc
Confidence 4589999999999998888876542 78889999988766655442 3579999993 34456778
Q ss_pred CCcceEee
Q psy8712 360 THCRFFVL 367 (651)
Q Consensus 360 ~~l~~lVi 367 (651)
.+++++|.
T Consensus 95 ~~v~~VI~ 102 (300)
T 3i32_A 95 PQVDLVVH 102 (300)
T ss_dssp CCCSEEEE
T ss_pred cceeEEEE
Confidence 88888874
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.28 E-value=4.3 Score=42.44 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=55.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+.++||.++|++-+..+++.++..+ +.+..+.|+.+..++...+. ...+|||+|. .+ ...++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~-------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gid 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEG-------YACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HH-HTTSC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCC-------CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcCCC
Confidence 46689999999999999999887753 78888999988766554442 3579999994 33 34567
Q ss_pred cCCcceEee
Q psy8712 359 LTHCRFFVL 367 (651)
Q Consensus 359 l~~l~~lVi 367 (651)
+.+++++|.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 788888875
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=80.23 E-value=2.3 Score=43.31 Aligned_cols=21 Identities=0% Similarity=-0.159 Sum_probs=16.9
Q ss_pred CCCCeEEEecCCCCceeeeec
Q psy8712 250 PPKDYIAVCNAPKQNVKHSES 270 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~ 270 (651)
.+..++..+..|+|||..+-.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 346789999999999997543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 651 | ||||
| d2fnja1 | 217 | b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi | 3e-25 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 7e-25 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 1e-08 | |
| d2afja1 | 213 | b.29.1.22 (A:12-224) SPRY domain-containing SOCS b | 2e-23 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-15 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 2e-11 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 1e-14 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 1e-10 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 2e-14 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 6e-11 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 8e-14 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 1e-12 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 9e-14 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 1e-11 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 4e-11 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 3e-10 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 1e-10 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 6e-09 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 4e-10 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 2e-09 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 5e-10 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 3e-05 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 8e-10 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 0.001 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 4e-08 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 4e-04 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 1e-07 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 2e-07 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 4e-07 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 1e-04 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 1e-04 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 2e-04 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 4e-04 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 0.001 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 0.003 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 0.004 |
| >d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: LD34464p species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 102 bits (254), Expect = 3e-25
Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 28/187 (14%)
Query: 89 WILSVWDRDTAMAITPEGLRCQSRE--QKEWHGCRANKGVYGRGKYYYEATVTDEGL--- 143
+ DR + + + R + R G+ +G + +E
Sbjct: 24 HSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGL-TKGLHIWEIYWPTRQRGTH 82
Query: 144 CRVGWSTSQAVRD-------LGTDRFG----------FGFGGTGKKSNNKQFDNYGEAFG 186
VG T+ A +G+ + EAF
Sbjct: 83 AVVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFL 142
Query: 187 MHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAV--VLKNAEMSFNFGAT 244
+ D LD+D T++F + Q+LG+AF + L+ YP V V + E++ +
Sbjct: 143 VPDKFLVALDMDEGTLSFIVDQQYLGIAF---RGLRGKKLYPIVSAVWGHCEITMRYIGG 199
Query: 245 PFKHEPP 251
P
Sbjct: 200 LDPEPLP 206
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (250), Expect = 7e-25
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 299 QTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLS 358
+ + + ++ I GG + Q+ L +IVVGTPGR+ D I+ G L+
Sbjct: 84 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLN 142
Query: 359 LTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418
L + ++F+LDEAD +L G+ ++++ K ++++ SAT+ ++ +A+
Sbjct: 143 LKNVKYFILDEADEMLNMGFIKDVEKILNACN------KDKRILLFSATMPR-EILNLAK 195
Query: 419 RLMYFPTWVDLK 430
+ M +++ K
Sbjct: 196 KYMGDYSFIKAK 207
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 53.1 bits (127), Expect = 1e-08
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGG-DVLMAAETGSGKTGAFCLPIIQ 62
F E+ + I A+ + PTD+Q + IPL L +++ A TGSGKT +F +P+I+
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 63 IVC 65
+V
Sbjct: 66 LVN 68
|
| >d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: SPRY domain-containing SOCS box protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.5 bits (239), Expect = 2e-23
Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 26/176 (14%)
Query: 89 WILSVWDRDTAMAITPEGLRCQSRE-QKEWHGCRANKGVYGRGKYYYEATVTDEG---LC 144
+ D + + GL + R + G R +G RG + +E + E
Sbjct: 35 HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGY-SRGLHAWEISWPLEQRGTHA 93
Query: 145 RVGWSTSQAVRDLGTDRFGFGFGGTG----------------KKSNNKQFDNYGEAFGMH 188
VG +T+ A G ++ GE +
Sbjct: 94 VVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVP 153
Query: 189 DVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAV--VLKNAEMSFNFG 242
+ + +LD++ T+ ++ G +LG AF + LK YP+V V ++ +
Sbjct: 154 ERLLVVLDMEEGTLGYSIGGTYLGPAF---RGLKGRTLYPSVSAVWGQCQVRIRYM 206
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.4 bits (179), Expect = 2e-15
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 11/172 (6%)
Query: 258 CNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIR 317
C A K + + ++ V +++ +RELA Q + +F K++ P ++
Sbjct: 43 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYM--PNVK 100
Query: 318 ELLIIGGVNVKDQMSVLSS-GVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLL-K 375
+ GG+++K VL IVVGTPGR+ L L+L H + F+LDE D +L +
Sbjct: 101 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 160
Query: 376 QGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427
+ + + P Q+++ SATL +++ + + M P +
Sbjct: 161 LDMRRDVQEIFRMTP------HEKQVMMFSATLSK-EIRPVCRKFMQDPMEI 205
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (149), Expect = 2e-11
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 3 AFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
F + + PE+ +A+ + + P++VQ E IP + G DVL A++G GKT F L +Q
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 63 IVCETLKEIQA 73
+ ++
Sbjct: 62 QLEPVTGQVSV 72
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (173), Expect = 1e-14
Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 9/173 (5%)
Query: 258 CNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIR 317
A K + A ++L A QA+++ P+RELA+Q ++ ++
Sbjct: 54 AQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA 113
Query: 318 ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG 377
I G + + I+VGTPGR+ D+++ +LS + + FVLDEAD +L +G
Sbjct: 114 C--IGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 171
Query: 378 YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430
+ + I + +++ Q+++ SAT+ DV ++ ++ M P + +K
Sbjct: 172 FKDQIYDIFQKLN------SNTQVVLLSATMPS-DVLEVTKKFMRDPIRILVK 217
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (142), Expect = 1e-10
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ +F++M + + + + + P+ +Q AI + G DV+ A++G+GKT F + I
Sbjct: 11 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 70
Query: 61 IQIVCETLKEIQA 73
+Q + LK QA
Sbjct: 71 LQQIELDLKATQA 83
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (172), Expect = 2e-14
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 258 CNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIR 317
+ K + + + + QA+I+ P+RELA Q ++ + ++
Sbjct: 59 AQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY---MNVQ 115
Query: 318 ELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQG 377
IGG NV + + L G +V GTPGR+ D+I L + VLDEAD +L +G
Sbjct: 116 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 175
Query: 378 YGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430
+ I +++ +P Q+++ SATL ++ +M + M P + +K
Sbjct: 176 FKEQIYDVYRYLPP------ATQVVLISATLPH-EILEMTNKFMTDPIRILVK 221
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (146), Expect = 6e-11
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F+ MG+ ++ + + + P+ +Q AI I+ G DV+ +++G+GKT F + ++Q
Sbjct: 19 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 78
Query: 64 VCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTAMAIT 103
+ ++E Q A +++PT L+V + +A+
Sbjct: 79 LDIQVRETQ---------ALILAPTRELAVQIQKGLLALG 109
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 69.2 bits (168), Expect = 8e-14
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
P+ +I+ P+RELA Q ++ KF +R ++ GG + Q+ + G ++V T
Sbjct: 99 PKCLILAPTRELAIQILSESQKFSLNT---PLRSCVVYGGADTHSQIREVQMGCHLLVAT 155
Query: 345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
PGR+ D I +SL C++ VLDEAD +L G+ I ++ ++ + G Q ++
Sbjct: 156 PGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS--GINRQTLMF 213
Query: 405 SATLHDFDVKKMAERLMYFPTWV 427
SAT +++K+A +Y ++
Sbjct: 214 SATFPK-EIQKLAADFLYNYIFM 235
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 65.7 bits (159), Expect = 1e-12
Identities = 30/91 (32%), Positives = 45/91 (49%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ F+E+ + P I + + PT +Q AIP IL D++ A+TGSGKT AF +PI
Sbjct: 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 79
Query: 61 IQIVCETLKEIQAGKGQGKAKAQVISPTWIL 91
I + Q K +++PT L
Sbjct: 80 INHLVCQDLNQQRYSKTAYPKCLILAPTREL 110
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.7 bits (167), Expect = 9e-14
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIV 341
APQA+++ P+RELA Q ++ + + V + + IV
Sbjct: 76 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR----DAQIV 131
Query: 342 VGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401
VGTPGR+ D I + F+LDEAD +L G+ I ++ +P Q+
Sbjct: 132 VGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------PTTQV 185
Query: 402 IVCSATLHDFDVKKMAERLMYFPTWV 427
++ SAT+ + DV ++ + M P +
Sbjct: 186 VLLSATMPN-DVLEVTTKFMRNPVRI 210
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.5 bits (151), Expect = 1e-11
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F++M + + + V + P+ +Q AI I+ G DVL A++G+GKTG F + +Q
Sbjct: 12 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 71
Query: 64 VCETLKEIQAGKGQGKAKAQVISPTWI 90
+ ++K QA +++PT
Sbjct: 72 IDTSVKAPQAL---------MLAPTRE 89
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.7 bits (146), Expect = 4e-11
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQ 62
FE+ + E+ + EM W P+ +Q E+IP+ L G D+L A+ G+GK+GA+ +P+++
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.4 bits (140), Expect = 3e-10
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 257 VCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKI 316
+ A K + L + QA++I P+RELA Q I+ K + K+
Sbjct: 44 LARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKV 103
Query: 317 RELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQ 376
GG N++D + L V +V+ TPGR+ DLI G + H + VLDEAD LL Q
Sbjct: 104 MA--TTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161
Query: 377 GYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVD 428
+ +++ + +P K Q+++ SAT V+K + P ++
Sbjct: 162 DFVQIMEDIILTLP------KNRQILLYSATFPL-SVQKFMNSHLEKPYEIN 206
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.2 bits (142), Expect = 1e-10
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
FE+ + E+ + E + P+ +Q EAIP+ + G D+L A+ G+GKT AF +P ++
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 64 VCETLKEIQA 73
V L +IQA
Sbjct: 63 VKPKLNKIQA 72
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (129), Expect = 6e-09
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 307 FKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFV 366
+ I ++ GG N++D + L+ V I+VGTPGR+ DL S L+ C F+
Sbjct: 89 VRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 148
Query: 367 LDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTW 426
+DEAD +L + + +I+++ +P Q ++ SAT VK+ + ++ P
Sbjct: 149 MDEADKMLSRDFKTIIEQILSFLP------PTHQSLLFSATFPL-TVKEFMVKHLHKPYE 201
Query: 427 VDL 429
++L
Sbjct: 202 INL 204
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.4 bits (140), Expect = 4e-10
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
+ F E +L E + + P +Q IL A TG GKT
Sbjct: 21 LCLFPEDFLLKEFVEFFRKCVGE-PRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMS 79
Query: 61 IQIVCETLKEI 71
+ + + +
Sbjct: 80 LFLALKGKRCY 90
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 56.4 bits (135), Expect = 2e-09
Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 12/153 (7%)
Query: 279 KLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFI---TDPKIRELLIIGGVNVKDQMSVLS 335
L + +I P+ L Q I K+ + T+ I K+
Sbjct: 81 FLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNL 140
Query: 336 SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYG-----NLIDRMHKQIP 390
IV+ T + L H F +D+ D +LK +L+ +
Sbjct: 141 RNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKT 196
Query: 391 KITSDGKRLQMIVCSATLHDFDVKKMAERLMYF 423
K R ++V +AT ++ +L+ F
Sbjct: 197 KSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 57.4 bits (137), Expect = 5e-10
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 4 FEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQI 63
F P I +A++ + + PT++Q IP L G ++ ++TG+GKT A+ LPI++
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 62
Query: 64 VCE 66
+
Sbjct: 63 IKP 65
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 43.1 bits (100), Expect = 3e-05
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNL 381
IGG + + + L+ IV+GTPGR+ D I L + V+DEAD +L G+
Sbjct: 108 IGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITD 167
Query: 382 IDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWV 427
+D++ ++PK LQM+V SAT+ + +K ++ M PT+V
Sbjct: 168 VDQIAARMPK------DLQMLVFSATIPE-KLKPFLKKYMENPTFV 206
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 58.4 bits (140), Expect = 8e-10
Identities = 31/287 (10%), Positives = 67/287 (23%), Gaps = 69/287 (24%)
Query: 279 KLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGV 338
+ + + +I+ P+R +A + + P IR + +
Sbjct: 33 EAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIR--------------AEHTGRE 78
Query: 339 DIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398
+ + + + + + ++DEA +
Sbjct: 79 IVDLMCHATFTMRLL-SPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEM------GE 131
Query: 399 LQMIVCSATLHDFDVK------KMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQD- 451
I +AT + + P G + V + V + +
Sbjct: 132 AAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAG 191
Query: 452 -ETWGRLRS---------------------HIQTDGVHARDNARPGIDI-------SGLP 482
+ LR D V D + G +
Sbjct: 192 NDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRRC 251
Query: 483 ------------FIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
I+ +P ++ R GRVGR + +
Sbjct: 252 MKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYM 298
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 39.1 bits (90), Expect = 0.001
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 35 LILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWIL 91
+ +M G+GKT + I ++ +G + +++PT ++
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAI----------VREAIKRGL-RTLILAPTRVV 50
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 51.5 bits (122), Expect = 4e-08
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 4 FEEM--GVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPII 61
EE+ + ++E QAEA+ + G ++L+A T +GKT + ++
Sbjct: 3 VEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV 62
Query: 62 QIVC 65
+
Sbjct: 63 REAI 66
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 12/136 (8%)
Query: 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGT 344
+++ + P R LA + + K++K I DI+V T
Sbjct: 69 GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDC-------DIIVTT 121
Query: 345 PGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVC 404
+ + LI + V+DE L + G ++ + ++ ++ K L++I
Sbjct: 122 SEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---NKALRVIGL 178
Query: 405 SATLHDFDVKKMAERL 420
SAT +V ++AE L
Sbjct: 179 SATAP--NVTEIAEWL 192
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 51.5 bits (123), Expect = 1e-07
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 433 DAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDD 492
+P + VVV D G S I + + I TLP D
Sbjct: 73 SVIPTSGDVVVVATDALMTGFTGDFDSVIDCN-TCVT--QTVDFSLDPTFTIETTTLPQD 129
Query: 493 KANYVHRIGRVGR 505
+ R GR GR
Sbjct: 130 AVSRTQRRGRTGR 142
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 50.0 bits (118), Expect = 2e-07
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 1 MAAFEEMGVLPEIGKAVEEMD-WLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 59
MA E + + + ++E + Q E I +L G D L+ TG GK+ + +P
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP 60
Query: 60 IIQIVCETL 68
+ + T+
Sbjct: 61 ALLLNGLTV 69
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 49.9 bits (118), Expect = 4e-07
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYH 526
G+D+ + ++ + R GR GR G I L++ Y+
Sbjct: 232 GLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRDEAYY 282
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 475 GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521
GID+ + M+ Y+ R+GR+ R + L +
Sbjct: 151 GIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 470 DNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
D G+D+ + IIN LP+++ Y+HRIGR GR R G+AI+ V
Sbjct: 92 DVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 139
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 439 VHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVH 498
V + + Q+ +T + + + + D GID+ + +IN LP +K NY+H
Sbjct: 54 VSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 113
Query: 499 RIGRVGRAERMGLAISLVS 517
RIGR GR R G+AI+ V+
Sbjct: 114 RIGRGGRFGRKGVAINFVT 132
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 476 IDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517
ID++ L +IN LP + +Y+HRIGR GRA + G AIS+++
Sbjct: 92 IDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 133
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 37.8 bits (87), Expect = 0.001
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 482 PFIINMTLPDDKANYVHRIGRVGRAER 508
+ P D + R GR GR +
Sbjct: 101 DCNTSDGKPQDAVSRTQRRGRTGRGKP 127
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 36.7 bits (83), Expect = 0.004
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 21 DWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCE 66
D + P Q + L+ TG GKT + + +
Sbjct: 6 DLIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK 50
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 651 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.94 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.93 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.92 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.92 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.84 | |
| d2afja1 | 213 | SPRY domain-containing SOCS box protein 2 {Mouse ( | 99.76 | |
| d2fnja1 | 217 | LD34464p {Fruit fly (Drosophila melanogaster) [Tax | 99.75 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.74 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.73 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.68 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.68 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.65 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.59 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.57 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.55 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.54 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.49 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.49 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.47 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.4 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.25 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.2 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.19 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.1 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.06 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.8 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.65 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.6 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.53 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.38 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.13 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.05 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.03 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.83 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.45 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.19 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.59 | |
| d2iwgb1 | 179 | 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96 | 95.65 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.2 | |
| d2fbea1 | 188 | Similar to Ret finger protein-like 1 {Human (Homo | 94.82 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 94.73 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 94.65 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 94.49 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 94.35 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 93.52 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 92.89 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.84 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 92.41 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 90.73 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 89.04 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 88.57 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 88.57 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 87.4 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 86.59 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 86.03 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 85.5 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.3 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 85.2 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 84.33 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 84.08 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 84.07 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 83.64 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 83.14 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 81.35 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 80.91 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 80.77 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 80.61 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 80.3 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-46 Score=368.02 Aligned_cols=205 Identities=30% Similarity=0.527 Sum_probs=191.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|||+|+|+++|.++||..|||||++|||.++.|+||+++||||||||+||++|+++.+..
T Consensus 17 ~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~--------------- 81 (222)
T d2j0sa1 17 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI--------------- 81 (222)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT---------------
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccc---------------
Confidence 47999999999999999999999999999999999999999999999999999999999984421
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 82 -------------------------------------------------------------------------------- 81 (222)
T d2j0sa1 82 -------------------------------------------------------------------------------- 81 (222)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 82 -------------------------------------------------------------------------------- 81 (222)
T d2j0sa1 82 -------------------------------------------------------------------------------- 81 (222)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
....|++||++||||||.|+++.++.++++.. +++.++
T Consensus 82 ---------------------------------------~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~---i~~~~~ 119 (222)
T d2j0sa1 82 ---------------------------------------QVRETQALILAPTRELAVQIQKGLLALGDYMN---VQCHAC 119 (222)
T ss_dssp ---------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEE
T ss_pred ---------------------------------------cccCceeEEecchHHHHHHHHHHHHHHhCccc---eeEEEE
Confidence 12346899999999999999999999998765 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+||.....+...++.++||||+||+|+.+++.++.+.++++++||+||||+|++.+|.+++..|++.+|+ ++|+
T Consensus 120 ~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~------~~Q~ 193 (222)
T d2j0sa1 120 IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP------ATQV 193 (222)
T ss_dssp CTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCT------TCEE
T ss_pred eecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHHHHHhCCC------CCEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
++||||+++ ++.+++++++++|..|.+.
T Consensus 194 ilfSAT~~~-~v~~l~~~~l~~Pv~I~V~ 221 (222)
T d2j0sa1 194 VLISATLPH-EILEMTNKFMTDPIRILVK 221 (222)
T ss_dssp EEEESCCCH-HHHTTGGGTCSSCEEECCC
T ss_pred EEEEEeCCH-HHHHHHHHHCCCCEEEEEe
Confidence 999999997 8999999999999988765
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-44 Score=355.45 Aligned_cols=204 Identities=33% Similarity=0.551 Sum_probs=188.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
++|++|||+|+|+++|.++||..|||||++|||.++.|+||+++||||||||+||++|+++.+..
T Consensus 3 ~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~--------------- 67 (206)
T d1veca_ 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL--------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---------------
T ss_pred CChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccc---------------
Confidence 58999999999999999999999999999999999999999999999999999999999984322
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 68 -------------------------------------------------------------------------------- 67 (206)
T d1veca_ 68 -------------------------------------------------------------------------------- 67 (206)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 68 -------------------------------------------------------------------------------- 67 (206)
T d1veca_ 68 -------------------------------------------------------------------------------- 67 (206)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
..+++++||++||+|||.|+++.+..+.+... .+.+...
T Consensus 68 ---------------------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~--~~~~~~~ 106 (206)
T d1veca_ 68 ---------------------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMG--GAKVMAT 106 (206)
T ss_dssp ---------------------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS--SCCEEEE
T ss_pred ---------------------------------------cccCcceEEEeecchhhHHHHHHHHHHhhccc--Ccccccc
Confidence 12356899999999999999999999887654 4778888
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
.|+.....+...+.+++||||+||+++.+++..+.+.++++++||+||||.|++++|.+++..|++.+|+ ++|+
T Consensus 107 ~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~------~~Q~ 180 (206)
T d1veca_ 107 TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK------NRQI 180 (206)
T ss_dssp CSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT------TCEE
T ss_pred cCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHHHHHHhCCC------CCEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEE
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVD 428 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~ 428 (651)
++||||+++ ++.++++.++++|..|+
T Consensus 181 ~l~SAT~~~-~v~~l~~~~l~~P~~I~ 206 (206)
T d1veca_ 181 LLYSATFPL-SVQKFMNSHLEKPYEIN 206 (206)
T ss_dssp EEEESCCCH-HHHHHHHHHCSSCEEEC
T ss_pred EEEEecCCH-HHHHHHHHHCCCCEEEC
Confidence 999999997 99999999999998763
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-44 Score=352.84 Aligned_cols=205 Identities=30% Similarity=0.506 Sum_probs=186.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
|+|++|||+|+|+++|.++||..|||||++|||.++.|+||+++||||||||+||++|+++.+..
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~--------------- 65 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP--------------- 65 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---------------
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecc---------------
Confidence 68999999999999999999999999999999999999999999999999999999999984311
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (207)
T d1t6na_ 66 -------------------------------------------------------------------------------- 65 (207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (207)
T d1t6na_ 66 -------------------------------------------------------------------------------- 65 (207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
...+|+++|++||||||.|+++.++.+..+.. .+++.++
T Consensus 66 ---------------------------------------~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~--~~~~~~~ 104 (207)
T d1t6na_ 66 ---------------------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMP--NVKVAVF 104 (207)
T ss_dssp ---------------------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTST--TCCEEEE
T ss_pred ---------------------------------------cCCCceEEEEeccchhhHHHHHHHHHHHhhCC--CceeEEE
Confidence 12356899999999999999999999998765 4778889
Q ss_pred eCCccHHHHHHHhc-cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhh-ccchHHHHHHHhcCCCccCCCCce
Q psy8712 322 IGGVNVKDQMSVLS-SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLK-QGYGNLIDRMHKQIPKITSDGKRL 399 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~-~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~-~gf~~~i~~il~~lp~~~~~~~~~ 399 (651)
+||.....+...+. .++||||+||+++.++++++.+.+++++++|+||||.|++ .+|.+++..|++.+|+ ++
T Consensus 105 ~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~------~~ 178 (207)
T d1t6na_ 105 FGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH------EK 178 (207)
T ss_dssp SCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS------SS
T ss_pred eccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHHHHHHHHhCCC------CC
Confidence 99999888877764 5799999999999999999999999999999999999998 4899999999999987 68
Q ss_pred eEEEEeeccChHHHHHHHHHhccCCeEEEc
Q psy8712 400 QMIVCSATLHDFDVKKMAERLMYFPTWVDL 429 (651)
Q Consensus 400 Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~ 429 (651)
|+++||||+++ .+.++++.++++|..|.+
T Consensus 179 Q~il~SAT~~~-~v~~l~~~~l~~P~~I~V 207 (207)
T d1t6na_ 179 QVMMFSATLSK-EIRPVCRKFMQDPMEIFV 207 (207)
T ss_dssp EEEEEESCCCT-TTHHHHHTTCSSCEEEEC
T ss_pred EEEEEeeeCCH-HHHHHHHHHCCCCEEEeC
Confidence 99999999997 899999999999988754
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-43 Score=347.37 Aligned_cols=206 Identities=29% Similarity=0.494 Sum_probs=184.8
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
|++|++|||+|.|+++|.++||..|||||++|||.++.|+||+++||||||||+||++|+++.+..
T Consensus 11 i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~-------------- 76 (218)
T d2g9na1 11 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL-------------- 76 (218)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT--------------
T ss_pred cCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc--------------
Confidence 578999999999999999999999999999999999999999999999999999999999985421
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
T Consensus 77 -------------------------------------------------------------------------------- 76 (218)
T d2g9na1 77 -------------------------------------------------------------------------------- 76 (218)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 77 -------------------------------------------------------------------------------- 76 (218)
T d2g9na1 77 -------------------------------------------------------------------------------- 76 (218)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
...+|++||++||+|||.|+++.+..+..... +++..
T Consensus 77 ----------------------------------------~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~---~~~~~ 113 (218)
T d2g9na1 77 ----------------------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYMG---ASCHA 113 (218)
T ss_dssp ----------------------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHHTTTT---CCEEE
T ss_pred ----------------------------------------cccCccEEEEcccchhhhhHHHHHhhhccccc---eeEEe
Confidence 12357899999999999999999999998776 78888
Q ss_pred EeCCccHHHHHH-HhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCce
Q psy8712 321 IIGGVNVKDQMS-VLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRL 399 (651)
Q Consensus 321 l~Gg~~~~~q~~-~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~ 399 (651)
+.++.....+.. ...+++||||+||+++.+++.++...++++++||+||||.|++.+|.+++..|++.+|+ ++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~------~~ 187 (218)
T d2g9na1 114 CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNS------NT 187 (218)
T ss_dssp ECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCT------TC
T ss_pred eecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHHHHHHhCCC------CC
Confidence 888766555443 33457999999999999999999999999999999999999999999999999999988 68
Q ss_pred eEEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 400 QMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 400 Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
|+++||||+++ .+.++++.++++|..|.++
T Consensus 188 Q~il~SAT~~~-~v~~~~~~~l~~pv~i~v~ 217 (218)
T d2g9na1 188 QVVLLSATMPS-DVLEVTKKFMRDPIRILVK 217 (218)
T ss_dssp EEEEEESCCCH-HHHHHHHHHCSSCEEEECC
T ss_pred eEEEEEecCCH-HHHHHHHHHCCCCEEEEEe
Confidence 99999999997 8999999999999998875
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-42 Score=341.17 Aligned_cols=203 Identities=31% Similarity=0.501 Sum_probs=178.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|||+|+++++|.++||..|||+|++|||.++.|+||+++||||||||+||++|+++.+..
T Consensus 10 ~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~--------------- 74 (212)
T d1qdea_ 10 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--------------- 74 (212)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---------------
T ss_pred cChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhc---------------
Confidence 57999999999999999999999999999999999999999999999999999999999985422
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 75 -------------------------------------------------------------------------------- 74 (212)
T d1qdea_ 75 -------------------------------------------------------------------------------- 74 (212)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 75 -------------------------------------------------------------------------------- 74 (212)
T d1qdea_ 75 -------------------------------------------------------------------------------- 74 (212)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
..++|+++|++||+||+.|++..+..+..... +++..+
T Consensus 75 ---------------------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~---~~~~~~ 112 (212)
T d1qdea_ 75 ---------------------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMD---IKVHAC 112 (212)
T ss_dssp ---------------------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC---CCEEEE
T ss_pred ---------------------------------------cCCCcceEEEcccHHHhhhhhhhhcccccccc---cceeeE
Confidence 12357899999999999999999999887765 888888
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
.++....++...++ ++||+|+||+++.+++..+.+.+++++++|+||||.|++++|.+++..|++.+++ ++|+
T Consensus 113 ~~~~~~~~~~~~~~-~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~------~~Q~ 185 (212)
T d1qdea_ 113 IGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP------TTQV 185 (212)
T ss_dssp CC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT------TCEE
T ss_pred eeccchhHHHHHhc-CCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHHHHHhCCC------CCeE
Confidence 88888877776664 6899999999999999999999999999999999999999999999999999987 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEc
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDL 429 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~ 429 (651)
++||||+++ .+.+++++++++|.+|.+
T Consensus 186 vl~SAT~~~-~v~~l~~~~l~~Pv~i~v 212 (212)
T d1qdea_ 186 VLLSATMPN-DVLEVTTKFMRNPVRILV 212 (212)
T ss_dssp EEEESSCCH-HHHHHHHHHCSSCEEEC-
T ss_pred EEEEeeCCH-HHHHHHHHHCCCCEEEeC
Confidence 999999997 899999999999988754
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=2.4e-42 Score=347.21 Aligned_cols=218 Identities=31% Similarity=0.521 Sum_probs=193.4
Q ss_pred CcccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCC
Q psy8712 1 MAAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKA 80 (651)
Q Consensus 1 ~~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~ 80 (651)
+.+|++|||+|+|+++|.++||..|||||++|||.++.|+||+++||||||||+||++|+|+.+.... ..
T Consensus 20 ~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~-------~~--- 89 (238)
T d1wrba1 20 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQD-------LN--- 89 (238)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTC-------C----
T ss_pred cCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcc-------cc---
Confidence 36899999999999999999999999999999999999999999999999999999999999886510 00
Q ss_pred ccccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCC
Q psy8712 81 KAQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTD 160 (651)
Q Consensus 81 ~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (651)
+
T Consensus 90 ----------------------------~--------------------------------------------------- 90 (238)
T d1wrba1 90 ----------------------------Q--------------------------------------------------- 90 (238)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------c---------------------------------------------------
Confidence 0
Q ss_pred CCCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhccccccccc
Q psy8712 161 RFGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFN 240 (651)
Q Consensus 161 ~~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~ 240 (651)
T Consensus 91 -------------------------------------------------------------------------------- 90 (238)
T d1wrba1 91 -------------------------------------------------------------------------------- 90 (238)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEE
Q psy8712 241 FGATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELL 320 (651)
Q Consensus 241 f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~ 320 (651)
.......+|++|||+||+|||.|+++.+..++...+ +++..
T Consensus 91 ------------------------------------~~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~---~~~~~ 131 (238)
T d1wrba1 91 ------------------------------------QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP---LRSCV 131 (238)
T ss_dssp ----------------------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS---CCEEE
T ss_pred ------------------------------------ccccCCCCceEEEeccchhhhcchheeeeecccCCC---cEEEE
Confidence 000123468999999999999999999999998776 99999
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+.|+.....+.+.+..++||||+||++|.+++..+.+.+++++++||||||.|++.+|.+++..|++.+... .+.++|
T Consensus 132 ~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~--~~~~~Q 209 (238)
T d1wrba1 132 VYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMP--SGINRQ 209 (238)
T ss_dssp ECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCC--CGGGCE
T ss_pred EeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHHHHHHHHHhcCC--CCCCCE
Confidence 999999888888889999999999999999999999999999999999999999999999999999987542 233689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDL 429 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~ 429 (651)
+++||||+++ ++.++++.+|++|..|.+
T Consensus 210 ~il~SAT~~~-~v~~l~~~~~~~p~~i~v 237 (238)
T d1wrba1 210 TLMFSATFPK-EIQKLAADFLYNYIFMTV 237 (238)
T ss_dssp EEEEESSCCH-HHHHHHHHHCSSCEEEEE
T ss_pred EEEEeeeCCH-HHHHHHHHHCCCCEEEEe
Confidence 9999999997 999999999999988865
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.2e-41 Score=333.44 Aligned_cols=137 Identities=33% Similarity=0.535 Sum_probs=126.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
++|++|||+||++||.|+++.++.+..... +++...+|+.+...+.+.+ +++||||+||+++.++++++.+.++++
T Consensus 71 ~~~~~lil~pt~~l~~q~~~~~~~~~~~~~---~~v~~~~g~~~~~~~~~~l-~~~~IlV~TP~~l~~~l~~~~~~~~~l 146 (208)
T d1hv8a1 71 NGIEAIILTPTRELAIQVADEIESLKGNKN---LKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLKNV 146 (208)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSC---CCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHTTCSCTTSC
T ss_pred cCcceEEEeeccccchhhhhhhhhhcccCC---eEEEEeeCCCChHHHHHhc-CCCCEEEEChHHHHHHHHcCCCCcccC
Confidence 356899999999999999999999998775 8999999999988887766 479999999999999999999999999
Q ss_pred ceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 363 RFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 363 ~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
++|||||||+|++.++.+++.+|++.+++ ++|++++|||+++ .+.++++++++||..|.++
T Consensus 147 ~~lViDEad~l~~~~~~~~i~~I~~~~~~------~~Q~i~~SAT~~~-~v~~~~~~~l~~~~~I~~~ 207 (208)
T d1hv8a1 147 KYFILDEADEMLNMGFIKDVEKILNACNK------DKRILLFSATMPR-EILNLAKKYMGDYSFIKAK 207 (208)
T ss_dssp CEEEEETHHHHHTTTTHHHHHHHHHTSCS------SCEEEEECSSCCH-HHHHHHHHHCCSEEEEECC
T ss_pred cEEEEEChHHhhcCCChHHHHHHHHhCCC------CCeEEEEEccCCH-HHHHHHHHHCCCCeEEEEE
Confidence 99999999999999999999999999987 6899999999997 9999999999999888764
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-40 Score=328.14 Aligned_cols=205 Identities=34% Similarity=0.523 Sum_probs=190.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
.+|++|||+|+|+++|.++||..|||+|++|||.++.|+||+++||||||||+||++|+++.+..
T Consensus 1 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~--------------- 65 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP--------------- 65 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---------------
T ss_pred CChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhcccccccccc---------------
Confidence 47999999999999999999999999999999999999999999999999999999999984322
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (206)
T d1s2ma1 66 -------------------------------------------------------------------------------- 65 (206)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (206)
T d1s2ma1 66 -------------------------------------------------------------------------------- 65 (206)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLI 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l 321 (651)
..+.+++++++|+++++.|....+..+....+ +++...
T Consensus 66 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 103 (206)
T d1s2ma1 66 ---------------------------------------KLNKIQALIMVPTRELALQTSQVVRTLGKHCG---ISCMVT 103 (206)
T ss_dssp ---------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT---CCEEEE
T ss_pred ---------------------------------------ccccccceeeccchhhhhhhhhhhhhcccccC---eeEEee
Confidence 12345789999999999999999999888765 999999
Q ss_pred eCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeE
Q psy8712 322 IGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQM 401 (651)
Q Consensus 322 ~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~ 401 (651)
+|+.....+...+.+++||||+||++|.++++.+.+.++++++||+||||.|++.+|.+++..|++.+|+ ++|+
T Consensus 104 ~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~------~~Q~ 177 (206)
T d1s2ma1 104 TGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP------THQS 177 (206)
T ss_dssp CSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCS------SCEE
T ss_pred cCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHHHHHhCCC------CCEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 6899
Q ss_pred EEEeeccChHHHHHHHHHhccCCeEEEcc
Q psy8712 402 IVCSATLHDFDVKKMAERLMYFPTWVDLK 430 (651)
Q Consensus 402 l~~SATl~~~~v~~l~~~~l~~p~~i~~~ 430 (651)
++||||+++ .+.+++++++++|..|.+.
T Consensus 178 il~SATl~~-~v~~~~~~~l~~P~~I~~~ 205 (206)
T d1s2ma1 178 LLFSATFPL-TVKEFMVKHLHKPYEINLM 205 (206)
T ss_dssp EEEESCCCH-HHHHHHHHHCSSCEEESCC
T ss_pred EEEEEeCCH-HHHHHHHHHCCCCEEEEee
Confidence 999999997 9999999999999888764
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=4.4e-39 Score=316.79 Aligned_cols=207 Identities=33% Similarity=0.560 Sum_probs=184.8
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHhhHHhHhcCCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCc
Q psy8712 2 AAFEEMGVLPEIGKAVEEMDWLLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAK 81 (651)
Q Consensus 2 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~ 81 (651)
|.|++|||+|+|+++|+++||..|||+|++|||.++.|+||+++||||||||+||++|+++.+..
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~--------------- 65 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP--------------- 65 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT---------------
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeecccccc---------------
Confidence 67999999999999999999999999999999999999999999999999999999999984422
Q ss_pred cccccCceeeeccccccccccCCCCcccccccccccccccccccccCCceeEEEEEeccCCceeeccccccccccCCCCC
Q psy8712 82 AQVISPTWILSVWDRDTAMAITPEGLRCQSREQKEWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRDLGTDR 161 (651)
Q Consensus 82 ~~~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~ 161 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (209)
T d1q0ua_ 66 -------------------------------------------------------------------------------- 65 (209)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchhhcccccccccc
Q psy8712 162 FGFGFGGTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAVVLKNAEMSFNF 241 (651)
Q Consensus 162 ~~~~~gg~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f 241 (651)
T Consensus 66 -------------------------------------------------------------------------------- 65 (209)
T d1q0ua_ 66 -------------------------------------------------------------------------------- 65 (209)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCC-CCeeEEE
Q psy8712 242 GATPFKHEPPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITD-PKIRELL 320 (651)
Q Consensus 242 ~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~-~~i~v~~ 320 (651)
....+..++++|+++++.|.++.+......... ....+.+
T Consensus 66 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (209)
T d1q0ua_ 66 ---------------------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARC 106 (209)
T ss_dssp ---------------------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEE
T ss_pred ---------------------------------------ccccccccccccccchhHHHHHHHHhhhccccccccccccc
Confidence 012346899999999999999999887665432 2356667
Q ss_pred EeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCcee
Q psy8712 321 IIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQ 400 (651)
Q Consensus 321 l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q 400 (651)
+.++.+...+...+..+++|+|+||+++.+++.+....+++++++||||||.+++++|.+++..|++.+|+ ++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~~~------~~Q 180 (209)
T d1q0ua_ 107 LIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK------DLQ 180 (209)
T ss_dssp ECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT------TCE
T ss_pred cccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHHHHHHHHHHCCC------CCE
Confidence 77888777777778889999999999999999999999999999999999999999999999999999987 689
Q ss_pred EEEEeeccChHHHHHHHHHhccCCeEEEc
Q psy8712 401 MIVCSATLHDFDVKKMAERLMYFPTWVDL 429 (651)
Q Consensus 401 ~l~~SATl~~~~v~~l~~~~l~~p~~i~~ 429 (651)
+++||||+++ ++.+++++++++|..|.+
T Consensus 181 ~il~SATl~~-~v~~l~~~~l~~p~~i~V 208 (209)
T d1q0ua_ 181 MLVFSATIPE-KLKPFLKKYMENPTFVHV 208 (209)
T ss_dssp EEEEESCCCG-GGHHHHHHHCSSCEEEEC
T ss_pred EEEEEccCCH-HHHHHHHHHCCCCEEEEe
Confidence 9999999987 899999999999998875
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.1e-27 Score=234.05 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=88.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccH----HHHHHHhccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNV----KDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~----~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
++++++|+++|+.|+.+.++.++.. .......... ...........+|+++||.++............+
T Consensus 67 ~~~~v~P~~~L~~q~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~ 139 (206)
T d1oywa2 67 LTVVVSPLISLMKDQVDQLQANGVA-------AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWN 139 (206)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCC-------EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSC
T ss_pred ceEEeccchhhhhhHHHHHHhhccc-------ccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhhe
Confidence 6899999999999999999888642 2233333222 1122233456899999999886655555556788
Q ss_pred cceEeeccchhhhhccc--hHH---HHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh-ccCCe
Q psy8712 362 CRFFVLDEADGLLKQGY--GNL---IDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL-MYFPT 425 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf--~~~---i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~-l~~p~ 425 (651)
++++|+||||++.++++ ... +..+...++ +.|+++||||+++...+++.+.+ +.+|.
T Consensus 140 v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~~-------~~~ii~lSATl~~~v~~di~~~L~l~~p~ 202 (206)
T d1oywa2 140 PVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------TLPFMALTATADDTTRQDIVRLLGLNDPL 202 (206)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-------TSCEEEEESCCCHHHHHHHHHHHTCCSCE
T ss_pred eeeeeeeeeeeeeccccchHHHHHHHHHHHHhCC-------CCceEEEEeCCCHHHHHHHHHHcCCCCCc
Confidence 99999999999988753 222 233444454 37999999999974345677775 78884
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=4.4e-27 Score=235.00 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=84.7
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCC-CeeEEEEeCCccHHHHHHHh--ccCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDP-KIRELLIIGGVNVKDQMSVL--SSGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~-~i~v~~l~Gg~~~~~q~~~L--~~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
.++|||+||++|+.|+++.++++.+.++-. ...+....++.....+...+ ...++|+|+||++|.+.+ ..+++
T Consensus 87 ~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~----~~~~~ 162 (237)
T d1gkub1 87 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY----RELGH 162 (237)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCS----TTSCC
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhh----hhcCC
Confidence 379999999999999999999998765411 22233444444444443333 346899999999876533 34678
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcC------CC-ccCCCCceeEEEEeeccChHHHHHHHHHhcc
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQI------PK-ITSDGKRLQMIVCSATLHDFDVKKMAERLMY 422 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~l------p~-~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~ 422 (651)
++++||||||.|++.+. .+..++..+ .. ......+.|++++|||+++.....+.+.++.
T Consensus 163 ~~~vVvDE~d~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~ 228 (237)
T d1gkub1 163 FDFIFVDDVDAILKASK--NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN 228 (237)
T ss_dssp CSEEEESCHHHHHTSTH--HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC
T ss_pred CCEEEEEChhhhhhccc--chhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhC
Confidence 99999999999987542 222222221 00 0111225799999999986222344455543
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.92 E-value=3.4e-26 Score=235.81 Aligned_cols=210 Identities=12% Similarity=0.034 Sum_probs=127.2
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
+++|||+||++||.|+++.++.+..... .... .........|+++||+.+..++.. ...+.++++
T Consensus 39 ~~~lvi~Ptr~La~q~~~~l~~~~~~~~-------~~~~-------~~~~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~ 103 (305)
T d2bmfa2 39 LRTLILAPTRVVAAEMEEALRGLPIRYQ-------TPAI-------RAEHTGREIVDLMCHATFTMRLLS-PIRVPNYNL 103 (305)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTSCCBCC-------C---------------CCCSEEEEEHHHHHHHHTS-SSCCCCCSE
T ss_pred CEEEEEccHHHHHHHHHHHHhcCCccee-------eeEE-------eecccCccccccCCcHHHHHHHhc-CccccceeE
Confidence 3799999999999999988776542211 0000 011223568999999988776654 445789999
Q ss_pred EeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCC---C------c
Q psy8712 365 FVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGED---A------V 435 (651)
Q Consensus 365 lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~---~------~ 435 (651)
+||||||++..+++. +..++..+... ...|++++|||.+. ....+. ....|......... . .
T Consensus 104 vViDE~H~~~~~~~~--~~~~l~~~~~~----~~~~~v~~SAT~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (305)
T d2bmfa2 104 IIMDEAHFTDPASIA--ARGYISTRVEM----GEAAGIFMTATPPG-SRDPFP--QSNAPIMDEEREIPERSWNSGHEWV 174 (305)
T ss_dssp EEEESTTCCSHHHHH--HHHHHHHHHHH----TSCEEEEECSSCTT-CCCSSC--CCSSCEEEEECCCCCSCCSSCCHHH
T ss_pred EEeeeeeecchhhHH--HHHHHHHhhcc----ccceEEEeecCCCc-ceeeec--ccCCcceEEEEeccHHHHHHHHHHH
Confidence 999999999776431 22222222110 14799999999975 211110 01112111111000 0 0
Q ss_pred cCceEEEEEEeCcchH--HHHHHH---------------------hhccccceeeccccccCCCCCCCCCEEE-------
Q psy8712 436 PETVHHVVVKIDPQQD--ETWGRL---------------------RSHIQTDGVHARDNARPGIDISGLPFII------- 485 (651)
Q Consensus 436 ~~~i~~~~~~~~~~~~--~~~~~l---------------------~~~~~~~~l~~td~~~rGIDip~v~~VI------- 485 (651)
...-.+.+++|+..++ +.+..| ........+.+|+.+.+|+|++ +++||
T Consensus 175 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~ 253 (305)
T d2bmfa2 175 TDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMK 253 (305)
T ss_dssp HSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHGGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEE
T ss_pred HhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHHhhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCcee
Confidence 1122346778877653 222222 1112345677899999999994 55554
Q ss_pred ---EeCC----------CCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 486 ---NMTL----------PDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 486 ---n~dl----------P~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
+||. |.|..+|+||+||+||.|+.+....++..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~~ 300 (305)
T d2bmfa2 254 PVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 300 (305)
T ss_dssp EEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECSC
T ss_pred eeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECCC
Confidence 4444 557899999999999999999888777654
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=8.4e-26 Score=220.05 Aligned_cols=123 Identities=24% Similarity=0.346 Sum_probs=92.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|+|+|+++|+.|+.+.++++.... .++....|+..... .....++|+++||..+..++......+.++++|
T Consensus 70 ~vl~l~P~~~L~~q~~~~~~~~~~~~----~~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i 142 (202)
T d2p6ra3 70 KSLYVVPLRALAGEKYESFKKWEKIG----LRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCL 142 (202)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTTTT----CCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEE
T ss_pred cceeecccHHHHHHHHHHHHHHhhcc----ccceeeccCccccc---ccccccceeeeccHHHHHHHhccchhhhhhhhc
Confidence 68999999999999999998776543 45555666544322 123468999999999999998888888999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHh
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERL 420 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~ 420 (651)
|+||+|.+.+..+...+..++..+.... .+.|++++|||++ +..++++++
T Consensus 143 i~DE~h~~~~~~r~~~~~~~l~~i~~~~---~~~~~l~lSATl~--n~~~~~~~l 192 (202)
T d2p6ra3 143 VVDEIHLLDSEKRGATLEILVTKMRRMN---KALRVIGLSATAP--NVTEIAEWL 192 (202)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHHC---TTCEEEEEECCCT--THHHHHHHT
T ss_pred cccHHHHhcccccchHHHHHHHHHHhcC---CCCcEEEEcCCCC--cHHHHHHHc
Confidence 9999999987766555554544432211 1589999999997 467777555
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.84 E-value=1.5e-20 Score=181.49 Aligned_cols=120 Identities=18% Similarity=0.265 Sum_probs=90.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++||++|+++|+.|.++.++++.... +.++....++.........+ ...+|+++||+.+.+.+....+.+++++++
T Consensus 54 ~il~i~P~~~L~~q~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~-~~~~i~i~t~~~~~~~~~~~~~~~~~~~~v 129 (200)
T d1wp9a1 54 KVLMLAPTKPLVLQHAESFRRLFNLP---PEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLI 129 (200)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHBCSC---GGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEE
T ss_pred cEEEEcCchHHHHHHHHHHHHhhccc---ccceeeeecccchhHHHHhh-hcccccccccchhHHHHhhhhhhccccceE
Confidence 68999999999999999999886544 37777777777665554443 346899999999999998888889999999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHH
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKM 416 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l 416 (651)
|+||||++........+...+..... +.+++++|||++. ....+
T Consensus 130 IiDE~H~~~~~~~~~~~~~~~~~~~~------~~~~l~~SATp~~-~~~~~ 173 (200)
T d1wp9a1 130 VFDEAHRAVGNYAYVFIAREYKRQAK------NPLVIGLTASPGS-TPEKI 173 (200)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHCS------SCCEEEEESCSCS-SHHHH
T ss_pred EEEehhhhhcchhHHHHHHHHHhcCC------CCcEEEEEecCCC-cHHHH
Confidence 99999998765433333333322222 4789999999854 44443
|
| >d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: SPRY domain-containing SOCS box protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=2.7e-19 Score=175.08 Aligned_cols=147 Identities=23% Similarity=0.359 Sum_probs=122.7
Q ss_pred eeccccccccccCCCCcccccc-cccccccccccccccCCceeEEEEEeccC---Cceeecccccccccc-------CCC
Q psy8712 91 LSVWDRDTAMAITPEGLRCQSR-EQKEWHGCRANKGVYGRGKYYYEATVTDE---GLCRVGWSTSQAVRD-------LGT 159 (651)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~-------~g~ 159 (651)
+++.++.....++.+++.+.++ ..+.|.++|++.|++ +||||||++|.+. +-+++||++....++ +|.
T Consensus 37 wnp~~~~~~i~ls~g~l~~~~~~~~~~~~~v~gt~~~s-sGk~YwEv~i~~~~~~~~~~iGv~~~~~~~~~~~~~~~~G~ 115 (213)
T d2afja1 37 WNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYS-RGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGS 115 (213)
T ss_dssp SCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCC-CSEEEEEEECCCCSSSCCCEEEEEESSCCCSSCSSSCCCCC
T ss_pred CChhhcCCCeEEeCCCeEEEeCCccCccccEEECcccc-CCcEEEEEEEeccCCcceEEEeEeecccCccccCccccccc
Confidence 4667778888888899887665 346799999999997 7999999998654 467999998887764 788
Q ss_pred CCCCCCcC---------CCCccCCCcccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccCcchh
Q psy8712 160 DRFGFGFG---------GTGKKSNNKQFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAFYPAV 230 (651)
Q Consensus 160 ~~~~~~~g---------g~~~ks~~~~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~~p~~ 230 (651)
+..+|+|. +.+.+..+.....||+.|+.||||||+||+|+|+|+|.|||+.+|.||.- +....+||+|
T Consensus 116 ~~~s~g~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGvaLD~d~g~i~F~kNG~~lG~af~~---l~~~~lyP~v 192 (213)
T d2afja1 116 NSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRG---LKGRTLYPSV 192 (213)
T ss_dssp SCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHH---HHHHCCEEEE
T ss_pred ccCCcccccccceEeecccccccCCcCcCccCcccCCCCEEEEEEeCCCCEEEEEECCEEeeeeEEC---CCCCeEEEEE
Confidence 88888774 56667777778899999999999999999999999999999999999954 4567899999
Q ss_pred hc--ccccccccc
Q psy8712 231 VL--KNAEMSFNF 241 (651)
Q Consensus 231 ~~--k~~~~~~~f 241 (651)
+. -|+++.++|
T Consensus 193 s~~~g~~~~~~~~ 205 (213)
T d2afja1 193 SAVWGQCQVRIRY 205 (213)
T ss_dssp EECCTTSCCEEEE
T ss_pred EEecCCcEEEEEE
Confidence 76 478877776
|
| >d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: LD34464p species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.75 E-value=1.3e-19 Score=177.87 Aligned_cols=152 Identities=22% Similarity=0.294 Sum_probs=125.3
Q ss_pred eeeeccccccccccCCCCcccccccccc--cccccccccccCCceeEEEEEeccC---Cceeecccccccccc-------
Q psy8712 89 WILSVWDRDTAMAITPEGLRCQSREQKE--WHGCRANKGVYGRGKYYYEATVTDE---GLCRVGWSTSQAVRD------- 156 (651)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~------- 156 (651)
..++.++++....++.++..+-.++... |.+.|++.|++ +|||||||+|.+. .-.+|||++..+.++
T Consensus 24 ~~wn~~~~~~~~~ls~~~~~~~~~~~~~~~~~~vrgt~g~s-sGk~YWEV~v~~~~~~~~~~IGV~~~~~~~~~~~~~~~ 102 (217)
T d2fnja1 24 HSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLT-KGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSL 102 (217)
T ss_dssp TSEEEEEECTTEEEETTEEEEEEECCCTTEEEEEEESCCBC-SSEEEEEEECCGGGCTTCCEEEEECTTSCSEEESSCCC
T ss_pred ccCChhcCCCCEEEeCCCceEEEeCCccccCCeEEEccccc-CCcEEEEEEEecCCCCCeeEEEEEecccCcccCCcccc
Confidence 3468888999999999998887775444 67899999998 7999999999764 458999999988764
Q ss_pred CCCCCCCCCcC-CCCccCCCc---------ccCccCcccCCCcccccccccCCceeeeeccCcccccccccchhhhhccC
Q psy8712 157 LGTDRFGFGFG-GTGKKSNNK---------QFDNYGEAFGMHDVIGCLLDLDNMTVAFTKNGQHLGLAFNISQQLKNSAF 226 (651)
Q Consensus 157 ~g~~~~~~~~g-g~~~ks~~~---------~~~~~g~~~~~~d~ig~~~~~~~~~~~~~~ng~~~g~af~~~~~~~~~~~ 226 (651)
+|.|..+|+|. +.|++.|+. .+..||..|..||||||+||+|+|+|+|.|||+.+|.||.- +.+..+
T Consensus 103 ~G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~gDvIGV~LD~d~gtLsF~kNG~~lGvAf~~---l~~~~l 179 (217)
T d2fnja1 103 VGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIAFRG---LRGKKL 179 (217)
T ss_dssp TTSSTTEEEEETTTTEEEESTTTSCCEESSTTCCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECC---CTTCCB
T ss_pred ccCCCCcceEecCCCEEEecCCCccccccCcccccCCccCCCCEEEEEEeCCCCEEEEEECCEEeeEEEeC---CCCCeE
Confidence 89999999884 455555554 34578999999999999999999999999999999999974 456789
Q ss_pred cchhhcc--ccccccccCCC
Q psy8712 227 YPAVVLK--NAEMSFNFGAT 244 (651)
Q Consensus 227 ~p~~~~k--~~~~~~~f~~~ 244 (651)
||+|+.- |+++.++|...
T Consensus 180 yP~vs~~~~~~~v~~~~~~~ 199 (217)
T d2fnja1 180 YPIVSAVWGHCEITMRYIGG 199 (217)
T ss_dssp EEEEEECCTTCEEEEEEEEE
T ss_pred EEEEEeccCCcEEEEEEcCC
Confidence 9999754 68888887543
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=5.6e-18 Score=158.39 Aligned_cols=141 Identities=24% Similarity=0.390 Sum_probs=103.9
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEE-EccCCCCccCceEEEEEEeCcchHHHHHHHhh
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWV-DLKGEDAVPETVHHVVVKIDPQQDETWGRLRS 459 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 459 (651)
.+..+++..+. .|+|.|..|-. .+..++..+......+ .+.+. .+..++......+.
T Consensus 17 ~L~~ll~~~~~-------~k~iIF~~s~~--~~~~l~~~L~~~~~~~~~~~~~-------------~~~~~r~~~l~~f~ 74 (162)
T d1fuka_ 17 CLTDLYDSISV-------TQAVIFCNTRR--KVEELTTKLRNDKFTVSAIYSD-------------LPQQERDTIMKEFR 74 (162)
T ss_dssp HHHHHHHHTTC-------SCEEEEESSHH--HHHHHHHHHHHTTCCEEEECTT-------------SCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CcEEEEEEEEc--hHHHHHHHHhhcCceEEEeccC-------------CchhhHHHHHHHHh
Confidence 45566776654 47888888864 6777777664432111 11111 12233444444566
Q ss_pred ccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCC
Q psy8712 460 HIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSN 539 (651)
Q Consensus 460 ~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~ 539 (651)
......+.+||.++||||+|+|++|||||+|.+++.|+||+||+||.|+.|.|++|+++
T Consensus 75 ~~~~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~--------------------- 133 (162)
T d1fuka_ 75 SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN--------------------- 133 (162)
T ss_dssp TTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEET---------------------
T ss_pred hcccceeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCH---------------------
Confidence 67788999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccccc
Q psy8712 540 TQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 540 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
+|...++.||++++.+++++|.++.
T Consensus 134 -----------------------------~d~~~~~~i~~~~~~~~~~ip~~~~ 158 (162)
T d1fuka_ 134 -----------------------------EDVGAMRELEKFYSTQIEELPSDIA 158 (162)
T ss_dssp -----------------------------TTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred -----------------------------HHHHHHHHHHHHHcCcCCCCChHHH
Confidence 5778899999999999999988765
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.2e-18 Score=160.20 Aligned_cols=83 Identities=33% Similarity=0.569 Sum_probs=75.4
Q ss_pred ccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccCC
Q psy8712 460 HIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCSN 539 (651)
Q Consensus 460 ~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~~ 539 (651)
..+...+.+||.++||||+|+|++|||||+|.+.+.|+||+||+||.|+.|.+++|+++
T Consensus 82 ~g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~--------------------- 140 (168)
T d2j0sa2 82 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN--------------------- 140 (168)
T ss_dssp HTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEG---------------------
T ss_pred cCCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECH---------------------
Confidence 34556788999999999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccccccc
Q psy8712 540 TQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKL 592 (651)
Q Consensus 540 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~ 592 (651)
+|...++.|++.++.+++++|.++
T Consensus 141 -----------------------------~d~~~~~~i~~~~~~~i~e~p~~~ 164 (168)
T d2j0sa2 141 -----------------------------DDIRILRDIEQYYSTQIDEMPMNV 164 (168)
T ss_dssp -----------------------------GGHHHHHHHHHHTTCCCEECCSCC
T ss_pred -----------------------------HHHHHHHHHHHHHcCcCCCCCcCh
Confidence 678889999999999999887553
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=9.8e-17 Score=151.21 Aligned_cols=156 Identities=22% Similarity=0.354 Sum_probs=113.7
Q ss_pred cCCcc--eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCcc
Q psy8712 359 LTHCR--FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVP 436 (651)
Q Consensus 359 l~~l~--~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~ 436 (651)
+++++ ++++++-+.+ ..+..+++..+. .++|.|..|.. .+..+...+....
T Consensus 4 l~~i~q~yi~v~~~~K~------~~L~~ll~~~~~-------~k~iVF~~~~~--~~~~l~~~L~~~g------------ 56 (171)
T d1s2ma2 4 LKGITQYYAFVEERQKL------HCLNTLFSKLQI-------NQAIIFCNSTN--RVELLAKKITDLG------------ 56 (171)
T ss_dssp CTTEEEEEEECCGGGHH------HHHHHHHHHSCC-------SEEEEECSSHH--HHHHHHHHHHHHT------------
T ss_pred ccceEEEEEEcCHHHHH------HHHHHHHHhCCC-------CceEEEEeeee--hhhHhHHhhhccc------------
Confidence 44443 4555665433 235566666553 47888888853 6666666553211
Q ss_pred CceEEEEEEeC--cchHHHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEE
Q psy8712 437 ETVHHVVVKID--PQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAIS 514 (651)
Q Consensus 437 ~~i~~~~~~~~--~~~~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~ 514 (651)
+.-..++-+ ..++......+.......+.+|+.+.+|+|+|++++|||||+|.++++|+||+||+||.|+.|.||+
T Consensus 57 --~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~ 134 (171)
T d1s2ma2 57 --YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAIN 134 (171)
T ss_dssp --CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEE
T ss_pred --ccccccccccchhhhhhhhhhcccCccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEE
Confidence 111112211 2233344444666788899999999999999999999999999999999999999999999999999
Q ss_pred eeeCCccccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccccc
Q psy8712 515 LVSTVPEKVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 515 lv~~~de~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
|+++ +|...++.||+.++.+++.+|..+.
T Consensus 135 ~v~~--------------------------------------------------~e~~~~~~i~~~l~~~~~~~p~~~d 163 (171)
T d1s2ma2 135 LINW--------------------------------------------------NDRFNLYKIEQELGTEIAAIPATID 163 (171)
T ss_dssp EECG--------------------------------------------------GGHHHHHHHHHHHTCCCEECCSSCC
T ss_pred EeCH--------------------------------------------------HHHHHHHHHHHHHCCCCCCCCcccc
Confidence 9988 6788899999999999998887644
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=2.8e-16 Score=145.63 Aligned_cols=145 Identities=28% Similarity=0.404 Sum_probs=105.0
Q ss_pred eEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEE
Q psy8712 364 FFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVV 443 (651)
Q Consensus 364 ~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~ 443 (651)
++.+|+-|.+ +.+.++++.. +.+.|.|+.|.. .+..+.+.+-..- +....
T Consensus 8 ~i~v~~~~K~------~~L~~ll~~~--------~~k~IIF~~s~~--~~~~l~~~L~~~g--------------~~~~~ 57 (155)
T d1hv8a2 8 YVEVNENERF------EALCRLLKNK--------EFYGLVFCKTKR--DTKELASMLRDIG--------------FKAGA 57 (155)
T ss_dssp EEECCGGGHH------HHHHHHHCST--------TCCEEEECSSHH--HHHHHHHHHHHTT--------------CCEEE
T ss_pred EEEeChHHHH------HHHHHHHccC--------CCCEEEEECchH--HHHHHHhhhcccc--------------ccccc
Confidence 4556664432 3355565543 347899998864 5666666543221 11111
Q ss_pred EEe--CcchHHHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCcc
Q psy8712 444 VKI--DPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPE 521 (651)
Q Consensus 444 ~~~--~~~~~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de 521 (651)
+.- +..++......+.......+.+|+.+.+|||+|++++|||||+|.|+.+|+||+||+||.|+.|.+|+|+.+
T Consensus 58 ~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~--- 134 (155)
T d1hv8a2 58 IHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINR--- 134 (155)
T ss_dssp ECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECT---
T ss_pred ccccchhhhhhhhhhhhhcccceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEch---
Confidence 111 122333344445666788999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCccccc
Q psy8712 522 KVWYHGEWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQV 588 (651)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~ 588 (651)
.|...++.||+.++.+++++
T Consensus 135 -----------------------------------------------~d~~~~~~i~~~~~~~i~~l 154 (155)
T d1hv8a2 135 -----------------------------------------------REYKKLRYIERAMKLKIKKL 154 (155)
T ss_dssp -----------------------------------------------TSHHHHHHHHHHHTCCCCCB
T ss_pred -----------------------------------------------HHHHHHHHHHHHHCCCcccc
Confidence 56778899999999988765
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=3.4e-15 Score=143.96 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=95.7
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCce
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETV 439 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i 439 (651)
.+|.+.|++.-+.+ +.+..+++..+. .++|.|..|.. .+..++..+.... +
T Consensus 5 pNi~y~v~~~~~k~------~~L~~~l~~~~~-------~~~IIF~~t~~--~~~~l~~~l~~~~--------------~ 55 (200)
T d1oywa3 5 PNIRYMLMEKFKPL------DQLMRYVQEQRG-------KSGIIYCNSRA--KVEDTAARLQSKG--------------I 55 (200)
T ss_dssp TTEEEEEEECSSHH------HHHHHHHHHTTT-------CCEEEECSSHH--HHHHHHHHHHHTT--------------C
T ss_pred CCcEEEEEcCCcHH------HHHHHHHHhcCC-------CCEEEEEeeeh--hhHHhhhhhccCC--------------c
Confidence 46778888876643 335555555432 47888888874 6777776654421 1
Q ss_pred EEEEEEeC--cchHHHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeee
Q psy8712 440 HHVVVKID--PQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVS 517 (651)
Q Consensus 440 ~~~~~~~~--~~~~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~ 517 (651)
....+.-+ ..++......+...+..++++|+.+.+|||+|+|++|||||+|.++++|+||+|||||+|+.|.|++|++
T Consensus 56 ~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~ 135 (200)
T d1oywa3 56 SAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYD 135 (200)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEEC
T ss_pred eeEEecCCCcHHHHHHHHHHHhcccceEEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecC
Confidence 11112211 2223334444666778999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy8712 518 TV 519 (651)
Q Consensus 518 ~~ 519 (651)
+.
T Consensus 136 ~~ 137 (200)
T d1oywa3 136 PA 137 (200)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=1.6e-14 Score=141.56 Aligned_cols=115 Identities=19% Similarity=0.293 Sum_probs=83.2
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHH---hc-cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSV---LS-SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~---L~-~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
+.++++|+||..|+.|+++.++++...++ +++.++.|+.+..+.... +. ..++|||||-..+ ...+.+
T Consensus 104 g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~---~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l-----~~~~~f 175 (233)
T d2eyqa3 104 HKQVAVLVPTTLLAQQHYDNFRDRFANWP---VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKF 175 (233)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTT---CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCC
T ss_pred CCceEEEccHHHhHHHHHHHHHHHHhhCC---CEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhh-----ccCCcc
Confidence 34899999999999999999998877665 899999999887655433 33 3589999995433 345678
Q ss_pred CCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHH
Q psy8712 360 THCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418 (651)
Q Consensus 360 ~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~ 418 (651)
+++.++||||-|+. |+. +-..+ +.... ++.++++|||..+ +...++.
T Consensus 176 ~~LgLiIiDEeH~f---g~k-Q~~~l-~~~~~------~~~~l~~SATPip-rtl~~~~ 222 (233)
T d2eyqa3 176 KDLGLLIVDEEHRF---GVR-HKERI-KAMRA------NVDILTLTATPIP-RTLNMAM 222 (233)
T ss_dssp SSEEEEEEESGGGS---CHH-HHHHH-HHHHT------TSEEEEEESSCCC-HHHHHHH
T ss_pred ccccceeeechhhh---hhH-HHHHH-HhhCC------CCCEEEEecchhH-HHHHHHH
Confidence 99999999999964 222 11222 22222 5789999999887 4444443
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.2e-15 Score=138.77 Aligned_cols=141 Identities=19% Similarity=0.349 Sum_probs=102.6
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEe--CcchHHHHHHHh
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKI--DPQQDETWGRLR 458 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~ 458 (651)
.+..++..... .++|.|+.|.. .+..+.+.+...- +.-..++. +..++......+
T Consensus 17 ~L~~ll~~~~~-------~k~iIF~~~~~--~~~~l~~~L~~~~--------------~~~~~ihg~~~~~~r~~~l~~F 73 (168)
T d1t5ia_ 17 KLFDLLDVLEF-------NQVVIFVKSVQ--RCIALAQLLVEQN--------------FPAIAIHRGMPQEERLSRYQQF 73 (168)
T ss_dssp HHHHHHHHSCC-------SSEEEECSSHH--HHHHHHHHHHHTT--------------CCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CeEEEEEeeee--cchhhhhhhcccc--------------ccccccccccchhhhhhhhhhh
Confidence 45666666543 47888988863 5666665543221 01111121 222333334445
Q ss_pred hccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccccccccccccccCCccC
Q psy8712 459 SHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHGEWCATRGRNCS 538 (651)
Q Consensus 459 ~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~~~~~~~~~~~~ 538 (651)
......++.+|+.+.+|+|+|++++|||||+|.+++.|+||+||+||.|+.|.||+|+++.
T Consensus 74 ~~g~~~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~------------------- 134 (168)
T d1t5ia_ 74 KDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE------------------- 134 (168)
T ss_dssp HTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH-------------------
T ss_pred ccccceeeeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECch-------------------
Confidence 6667888999999999999999999999999999999999999999999999999999872
Q ss_pred CcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHhcCcccccccccc
Q psy8712 539 NTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHLNVTIQQVDDKLE 593 (651)
Q Consensus 539 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~~~~i~~~~~~~~ 593 (651)
+|...++.|++.++..+.++|.++.
T Consensus 135 ------------------------------~~~~~~~~i~~~~~~~~~elp~~~~ 159 (168)
T d1t5ia_ 135 ------------------------------NDAKILNDVQDRFEVNISELPDEID 159 (168)
T ss_dssp ------------------------------HHHHHHHHHHHHHCCCEEECC----
T ss_pred ------------------------------HHHHHHHHHHHHHcCCcccCCchhh
Confidence 5778899999999999998876654
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=3e-14 Score=142.29 Aligned_cols=112 Identities=20% Similarity=0.305 Sum_probs=80.0
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh---c-cCCcEEEECchhhHHHHhCCCcccCC
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL---S-SGVDIVVGTPGRMEDLISGGHLSLTH 361 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L---~-~~~dIlV~TP~rL~~ll~~~~l~l~~ 361 (651)
|+++++||..||.|+++.++++...++ +++.++.|+.+..+....+ . ..++|||||-.-+. ..+.+++
T Consensus 134 q~~~m~Pt~~La~Qh~~~~~~~f~~~~---~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~-----~~~~f~~ 205 (264)
T d1gm5a3 134 QTAFMVPTSILAIQHYRRTVESFSKFN---IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ-----EDVHFKN 205 (264)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCSS---CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH-----HCCCCSC
T ss_pred ceeEEeehHhhhHHHHHHHHHhhhhcc---ccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhc-----CCCCccc
Confidence 799999999999999999998887665 8999999998876544433 3 35899999964332 3456789
Q ss_pred cceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHH
Q psy8712 362 CRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMA 417 (651)
Q Consensus 362 l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~ 417 (651)
+.++||||-|+..-. -+. .+. ..+.+++++++|||..+ +...++
T Consensus 206 LglviiDEqH~fgv~-----Qr~---~l~---~~~~~~~~l~~SATPip-rtl~~~ 249 (264)
T d1gm5a3 206 LGLVIIDEQHRFGVK-----QRE---ALM---NKGKMVDTLVMSATPIP-RSMALA 249 (264)
T ss_dssp CCEEEEESCCCC----------C---CCC---SSSSCCCEEEEESSCCC-HHHHHH
T ss_pred cceeeeccccccchh-----hHH---HHH---HhCcCCCEEEEECCCCH-HHHHHH
Confidence 999999999975321 111 111 12336889999999876 443333
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.49 E-value=2.6e-14 Score=145.12 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=74.9
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+|+++|+.|.++.+..++.... ..+..+.+|...... .....+|+|+|++.+..+ ....++++++|
T Consensus 159 k~Liivp~~~Lv~Q~~~~f~~~~~~~~---~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~---~~~~~~~f~~V 229 (282)
T d1rifa_ 159 KILIIVPTTALTTQMADDFVDYRLFSH---AMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMM 229 (282)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTSCCG---GGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTS---CGGGGGGEEEE
T ss_pred eEEEEEcCchhHHHHHHHHHHhhcccc---ccceeecceeccccc---ccccceEEEEeeehhhhh---cccccCCCCEE
Confidence 689999999999999999998864322 445555566543221 223578999998776432 23346789999
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChH
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDF 411 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~ 411 (651)
|+||||++-. +.+..++..+.. ....+++|||++..
T Consensus 230 IvDEaH~~~a----~~~~~il~~~~~------~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 230 MNDECHLATG----KSISSIISGLNN------CMFKFGLSGSLRDG 265 (282)
T ss_dssp EEETGGGCCH----HHHHHHTTTCTT------CCEEEEECSSCCTT
T ss_pred EEECCCCCCc----hhHHHHHHhccC------CCeEEEEEeecCCC
Confidence 9999998643 456677776643 13458999998653
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.49 E-value=1.4e-14 Score=129.84 Aligned_cols=102 Identities=11% Similarity=0.048 Sum_probs=63.6
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcce
Q psy8712 285 PQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRF 364 (651)
Q Consensus 285 p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~ 364 (651)
.+++|++|+++|+.|.++.+.... ..+....+.... .....+.+.|...+.... .....+.++++
T Consensus 37 ~~vli~~p~~~l~~q~~~~~~~~~-------~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l 101 (140)
T d1yksa1 37 LRTLVLAPTRVVLSEMKEAFHGLD-------VKFHTQAFSAHG-------SGREVIDAMCHATLTYRM-LEPTRVVNWEV 101 (140)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTSC-------EEEESSCCCCCC-------CSSCCEEEEEHHHHHHHH-TSSSCCCCCSE
T ss_pred ceeeeeecchhHHHHHHHHhhhhh-------hhhccccccccc-------ccccchhhhhHHHHHHHH-hccccccceeE
Confidence 368999999999999988764332 222211111110 123567777877765543 34456789999
Q ss_pred Eeeccchhhhhccch--HHHHHHHhcCCCccCCCCceeEEEEeeccC
Q psy8712 365 FVLDEADGLLKQGYG--NLIDRMHKQIPKITSDGKRLQMIVCSATLH 409 (651)
Q Consensus 365 lViDEaD~ll~~gf~--~~i~~il~~lp~~~~~~~~~Q~l~~SATl~ 409 (651)
+|+||||.+....+. ..+.. +...+ +.+++++|||.|
T Consensus 102 vIiDEaH~~~~~~~~~~~~~~~-~~~~~-------~~~~l~lTATPp 140 (140)
T d1yksa1 102 IIMDEAHFLDPASIAARGWAAH-RARAN-------ESATILMTATPP 140 (140)
T ss_dssp EEETTTTCCSHHHHHHHHHHHH-HHHTT-------SCEEEEECSSCT
T ss_pred EEEccccccChhhHHHHHHHHH-HhhCC-------CCCEEEEEcCCC
Confidence 999999987543321 11222 22222 589999999986
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=1.4e-13 Score=133.24 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=66.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
++|||+|+++|+.|..+.++.++. ..+....|+. ....+|+|+|...+...... ..+++++|
T Consensus 112 ~~Liv~p~~~L~~q~~~~~~~~~~------~~~~~~~~~~---------~~~~~i~i~t~~~~~~~~~~---~~~~~~lv 173 (206)
T d2fz4a1 112 PTLIVVPTLALAEQWKERLGIFGE------EYVGEFSGRI---------KELKPLTVSTYDSAYVNAEK---LGNRFMLL 173 (206)
T ss_dssp CEEEEESSHHHHHHHHHHHGGGCG------GGEEEESSSC---------BCCCSEEEEEHHHHHHTHHH---HTTTCSEE
T ss_pred ceeEEEcccchHHHHHHHHHhhcc------cchhhccccc---------ccccccccceehhhhhhhHh---hCCcCCEE
Confidence 589999999999999999987754 2233333332 23457999998877654321 24578899
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
|+||||++-.. ...+++..++. ...+++|||+
T Consensus 174 IiDEaH~~~a~----~~~~i~~~~~~-------~~~lgLTATl 205 (206)
T d2fz4a1 174 IFDEVHHLPAE----SYVQIAQMSIA-------PFRLGLTATF 205 (206)
T ss_dssp EEECSSCCCTT----THHHHHHTCCC-------SEEEEEEESC
T ss_pred EEECCeeCCcH----HHHHHHhccCC-------CcEEEEecCC
Confidence 99999987533 34566666543 4578999997
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.40 E-value=3e-13 Score=127.79 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=71.8
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCc--chHHHHHHHhhccccceeeccccccCC
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDP--QQDETWGRLRSHIQTDGVHARDNARPG 475 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~td~~~rG 475 (651)
+.|++.|..|.. .+..++..+-.. .+...+++.+. .++.....-++..+.++|++|+.++||
T Consensus 31 ~~~~iif~~~~~--~~~~~~~~l~~~--------------g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rG 94 (181)
T d1t5la2 31 NERTLVTTLTKK--MAEDLTDYLKEA--------------GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREG 94 (181)
T ss_dssp TCEEEEECSSHH--HHHHHHHHHHTT--------------TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSS
T ss_pred CCeEEEEeehhh--hhHHHHHHHHhC--------------CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHcc
Confidence 468899988874 555555554332 11222233322 334444455777889999999999999
Q ss_pred CCCCCCCEEEEeCCCC-----ChhhhhhhcCccccCCCceEE
Q psy8712 476 IDISGLPFIINMTLPD-----DKANYVHRIGRVGRAERMGLA 512 (651)
Q Consensus 476 IDip~v~~VIn~dlP~-----s~~~YihRiGR~GR~g~~G~a 512 (651)
||+|+|++|||||+|. +.+.|+||+||+||.|..+..
T Consensus 95 iDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~~~~ 136 (181)
T d1t5la2 95 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVI 136 (181)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEE
T ss_pred CCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCceeE
Confidence 9999999999999996 688999999999999874433
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.25 E-value=3.4e-12 Score=115.02 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=49.7
Q ss_pred ccccceeeccccccCCCCCCCCCEEEEeC----CCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 460 HIQTDGVHARDNARPGIDISGLPFIINMT----LPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 460 ~~~~~~l~~td~~~rGIDip~v~~VIn~d----lP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
..+...+++||.+++||| +++++||||| +|.+.++|+||+||||| |+.|. ++|+++.
T Consensus 76 ~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~ 136 (138)
T d1jr6a_ 76 TNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPG 136 (138)
T ss_dssp TSSCEEEEESSSSCSSSC-CCBSEEEECSEETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSS
T ss_pred hhhcceeehhHHHHhccc-cccceEEEEEecCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCC
Confidence 345667889999999999 9999999965 69999999999999999 99995 7788774
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=1.9e-11 Score=113.89 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=77.1
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeC--cchHHHHHHHhhccccceeeccccccCC
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKID--PQQDETWGRLRSHIQTDGVHARDNARPG 475 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~l~~~~~~~~l~~td~~~rG 475 (651)
+.+++.|..|.. ....++..+-.+ .+.-..++.+ ..++......+...+.++|++|+.+.+|
T Consensus 31 g~r~lvfc~t~~--~~~~l~~~L~~~--------------Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~G 94 (174)
T d1c4oa2 31 GERTLVTVLTVR--MAEELTSFLVEH--------------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREG 94 (174)
T ss_dssp TCEEEEECSSHH--HHHHHHHHHHHT--------------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTT
T ss_pred CCcEEEEEcchh--HHHHHHHHHHhc--------------CCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeee
Confidence 468999999974 566666665433 1222333333 3344445555777889999999999999
Q ss_pred CCCCCCCEEEEeCCCC-----ChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 476 IDISGLPFIINMTLPD-----DKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 476 IDip~v~~VIn~dlP~-----s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
||+|+|++|||||+|. +.++|+||+||+||.++ |.++++...
T Consensus 95 iDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~ 141 (174)
T d1c4oa2 95 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADR 141 (174)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSS
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecC
Confidence 9999999999999776 55889999999999876 777777654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.19 E-value=1.2e-11 Score=110.77 Aligned_cols=128 Identities=13% Similarity=0.041 Sum_probs=86.2
Q ss_pred CCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHH
Q psy8712 252 KDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQM 331 (651)
Q Consensus 252 ~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~ 331 (651)
+..+..+.+|+|||.++..++. ..+.++||++|+++|++|..+.+...... ......++...
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~--------~~~~~vli~~P~~~l~~q~~~~~~~~~~~------~~~~~~~~~~~---- 70 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYA--------AQGYKVLVLNPSVAATLGFGAYMSKAHGV------DPNIRTGVRTI---- 70 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH--------TTTCCEEEEESCHHHHHHHHHHHHHHHSC------CCEEECSSCEE----
T ss_pred CEEEEEeCCCCCHHHHHHHHHH--------HcCCcEEEEcChHHHHHHHHHHHHHHhhc------ccccccccccc----
Confidence 4578899999999987655442 34568999999999999999998876542 22333333322
Q ss_pred HHhccCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeecc
Q psy8712 332 SVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATL 408 (651)
Q Consensus 332 ~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl 408 (651)
.....++++|.+.+.. .....+++++++||||+|.+-.. ....+..+++.+... .+.+++++|||.
T Consensus 71 ---~~~~~~~~~~~~~~~~---~~~~~~~~~~~vIiDE~H~~~~~-~~~~~~~~l~~~~~~----~~~~~l~~TATP 136 (136)
T d1a1va1 71 ---TTGSPITYSTYGKFLA---DGGCSGGAYDIIICDECHSTDAT-SILGIGTVLDQAETA----GARLVVLATATP 136 (136)
T ss_dssp ---CCCCSEEEEEHHHHHH---TTGGGGCCCSEEEEETTTCCSHH-HHHHHHHHHHHTTTT----TCSEEEEEESSC
T ss_pred ---ccccceEEEeeeeecc---ccchhhhcCCEEEEecccccCHH-HHHHHHHHHHHHHHC----CCCcEEEEeCCC
Confidence 1235788889876543 33445789999999999986432 122244455544331 146899999993
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=2.2e-11 Score=116.86 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=62.0
Q ss_pred CcchHHHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhh-cCccccCCCceEEEEeeeC
Q psy8712 447 DPQQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHR-IGRVGRAERMGLAISLVST 518 (651)
Q Consensus 447 ~~~~~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihR-iGR~GR~g~~G~ai~lv~~ 518 (651)
++.+++.....+...+.++++||+++++|||+|++++||+++.|....+++|+ .||+||.|++|+|++++++
T Consensus 75 ~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~ 147 (206)
T d1gm5a4 75 SQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 147 (206)
T ss_dssp CCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred cHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeecc
Confidence 34455556666778899999999999999999999999999999976666665 7999999999999999876
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.06 E-value=9.5e-11 Score=118.50 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=77.6
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCC-eEEEccCCCCccCceEEEEEEeCcchHHHHHHHhhccccceeeccccccCCC
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFP-TWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGI 476 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p-~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~l~~td~~~rGI 476 (651)
+.++|.|+.|.. .+..+.+.+.... ....+.+...... + -.....+.......++..+..++.+|+.+.+||
T Consensus 161 ~~k~iiF~~~~~--~~~~~~~~L~~~~~~~~~~~g~~~~~~---~--~~~~~~~~~~~~~~F~~g~~~vLv~T~~~~~Gl 233 (286)
T d1wp9a2 161 NSKIIVFTNYRE--TAKKIVNELVKDGIKAKRFVGQASKEN---D--RGLSQREQKLILDEFARGEFNVLVATSVGEEGL 233 (286)
T ss_dssp TCCEEEECSCHH--HHHHHHHHHHHTTCCEEEECCSSCC------------CCHHHHHHHHHHHTSCSEEEECGGGGGGG
T ss_pred CCcEEEEeCcHH--hHHHHHHHHHHcCCceEEeeccccccc---c--chhchHHHHHHHHHHHcCCCcEEEEccceeccc
Confidence 468999998864 5666666665432 1112222111100 0 112222333333334444678999999999999
Q ss_pred CCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 477 DISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 477 Dip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
|+|++++|||||+|.++..|+||+||+||. +.|.++.|+++.
T Consensus 234 d~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~-~~~~~~~l~~~~ 275 (286)
T d1wp9a2 234 DVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKG 275 (286)
T ss_dssp GSTTCCEEEESSCCHHHHHHHHHHTTSCSC-CCSEEEEEEETT
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCC-CCCEEEEEEeCC
Confidence 999999999999999999999999999997 578899999876
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.80 E-value=2.8e-10 Score=112.59 Aligned_cols=107 Identities=10% Similarity=0.153 Sum_probs=71.4
Q ss_pred HHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcc-hHHHHHHHhh
Q psy8712 381 LIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQ-QDETWGRLRS 459 (651)
Q Consensus 381 ~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~l~~ 459 (651)
.+..+++.+.. ..|.|+.|-. .+..+...+ .+. ++ -..... ..+....+ .
T Consensus 16 ~l~~~l~~~~~--------~~iif~~~~~--~~~~l~~~l-~~~--------------~h---g~~~~~~R~~~~~~f-~ 66 (248)
T d1gkub2 16 TLSSILEKLGT--------GGIIYARTGE--EAEEIYESL-KNK--------------FR---IGIVTATKKGDYEKF-V 66 (248)
T ss_dssp TTHHHHTTSCS--------CEEEEESSHH--HHHHHHHTT-TTS--------------SC---EEECTTSSSHHHHHH-H
T ss_pred HHHHHHHHhCC--------CEEEEECCHH--HHHHHHHHH-HHh--------------cc---CCCCHHHHHHHHHHH-H
Confidence 35666666533 5688888742 555555544 321 11 112222 23334433 4
Q ss_pred ccccceeecc----ccccCCCCCCC-CCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCc
Q psy8712 460 HIQTDGVHAR----DNARPGIDISG-LPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVP 520 (651)
Q Consensus 460 ~~~~~~l~~t----d~~~rGIDip~-v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~d 520 (651)
....++++|| |.+.||||+|+ |++|||||+| .|+||+||+||+|+.|.+++++...+
T Consensus 67 ~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P----~~~~r~gR~~R~g~~~~~~~~~~~~~ 128 (248)
T d1gkub2 67 EGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMVKLLAYLYRN 128 (248)
T ss_dssp HTSCSEEEEECC------CCSCCTTTCCEEEEESCC----EEEEECSCGGGSCHHHHHHHHTTTSC
T ss_pred hCCCeEEEEeccccchhhhccCccccccEEEEeCCC----cchhhhhhhhccCcceEeeeeccHhh
Confidence 4578899999 78999999996 9999999999 59999999999999999998887643
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.65 E-value=4.8e-09 Score=100.23 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=63.2
Q ss_pred chHHHHHHHhhccccceeeccccccCCCCCCCCCEEEE-------eCCCCChhhhhhhcCccccCC--CceEEEEeeeCC
Q psy8712 449 QQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIIN-------MTLPDDKANYVHRIGRVGRAE--RMGLAISLVSTV 519 (651)
Q Consensus 449 ~~~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn-------~dlP~s~~~YihRiGR~GR~g--~~G~ai~lv~~~ 519 (651)
..+...+.+++.....++.||+.+.+|||+|..++||+ ++.|.+..+|+||+|||||.| ..|.+++++.+.
T Consensus 107 ~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~ 186 (201)
T d2p6ra4 107 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 186 (201)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred hhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCC
Confidence 44555566666677889999999999999999999996 778899999999999999988 489999988876
Q ss_pred ccccc
Q psy8712 520 PEKVW 524 (651)
Q Consensus 520 de~~~ 524 (651)
+...+
T Consensus 187 ~~~~~ 191 (201)
T d2p6ra4 187 DREIA 191 (201)
T ss_dssp GHHHH
T ss_pred ChHHH
Confidence 55443
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=5.5e-09 Score=99.27 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=90.5
Q ss_pred chHHHHHHHhhccccceeeccccccCCCCCCCCCEEEEeCCCC-ChhhhhhhcCccccCCCceEEEEeeeCCcccccccc
Q psy8712 449 QQDETWGRLRSHIQTDGVHARDNARPGIDISGLPFIINMTLPD-DKANYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG 527 (651)
Q Consensus 449 ~~~~~~~~l~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~-s~~~YihRiGR~GR~g~~G~ai~lv~~~de~~~~~~ 527 (651)
.+.+....-+...+.++++||...+.|||+|+++++|.++.+. -...+.|..||+||.++.|+|++++.+..
T Consensus 70 ~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~~------- 142 (211)
T d2eyqa5 70 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK------- 142 (211)
T ss_dssp HHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG-------
T ss_pred HHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEecCCc-------
Confidence 3344444456677889999999999999999999999999997 45555555699999999999999986520
Q ss_pred ccccccCCccCCcccccccCCCCcchhhccccccCCcccchhHHHHHHHHHHHh----cCccccccccccCCcccCCCce
Q psy8712 528 EWCATRGRNCSNTQLTDVKGNSQVPIFLLSGTMVNGCCIWFDEKRMLGEIEEHL----NVTIQQVDDKLEIPADEFDGKV 603 (651)
Q Consensus 528 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~l~~Ie~~~----~~~i~~~~~~~~~~~~~~~~~~ 603 (651)
.+..+-.+.|+.|++.. |..|++.+..++ .++.
T Consensus 143 -------------------------------------~~~~~a~~RL~~l~~~~dlg~GF~iA~~DL~iR------G~G~ 179 (211)
T d2eyqa5 143 -------------------------------------AMTTDAQKRLEAIASLEDLGAGFALATHDLEIR------GAGE 179 (211)
T ss_dssp -------------------------------------GSCHHHHHHHHHHTTCCSBSHHHHHHHHHHHHH------HHHH
T ss_pred -------------------------------------CCCchHHHHHHHHHhcccCCcceeeeHhHHhhc------CCcc
Confidence 00013366777777655 457777777666 3444
Q ss_pred eecceecccC--ccchhhHhhhhHHHHHH
Q psy8712 604 VYGQKRVNMG--SSYENHVTQMEPSVNKL 630 (651)
Q Consensus 604 ~~g~~~~~~~--~~~~~~~~~~~~~~~el 630 (651)
..|.++++.. ..+..+.+.+.+++.++
T Consensus 180 llG~~QsG~~~~~~~~l~~~ll~~a~~~~ 208 (211)
T d2eyqa5 180 LLGEEQSGSMETIGFSLYMELLENAVDAL 208 (211)
T ss_dssp HHCHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ccccccCCchhhccHHHHHHHHHHHHHHH
Confidence 5566666532 33444555555555444
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.53 E-value=1.5e-08 Score=100.60 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=48.7
Q ss_pred cccceeeccccccC---CCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCC
Q psy8712 461 IQTDGVHARDNARP---GIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTV 519 (651)
Q Consensus 461 ~~~~~l~~td~~~r---GIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~ 519 (651)
...+.+++++...+ |+|++.+.+|||||+|.|+++|+||+||||| |+.|....+....
T Consensus 95 G~~dvVVaT~~~a~g~~giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~~t 155 (299)
T d1a1va2 95 GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGE 155 (299)
T ss_dssp CCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCSCC
T ss_pred CCCcEEEEEeehhccCCCCCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEecCC
Confidence 34566777777776 7888888899999999999999999999999 9999887666554
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.38 E-value=1.6e-07 Score=89.09 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=52.5
Q ss_pred hhccccceeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCC---ceEEEEeeeC
Q psy8712 458 RSHIQTDGVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAER---MGLAISLVST 518 (651)
Q Consensus 458 ~~~~~~~~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~---~G~ai~lv~~ 518 (651)
++..+..++.+++.+..|||+|.+++||+||.|.++..|+||+||++|.|. ....+.|++.
T Consensus 134 F~~~~~~vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 134 FRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp HHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred hhcCCeeeeeecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 334466788999999999999999999999999999999999999999975 3566677765
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.13 E-value=4.2e-06 Score=80.70 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=64.3
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCcceE
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHCRFF 365 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l~~l 365 (651)
.+||++| ..+..|..+++.++... .++.. ++....... ....+|+|+|.+.+..... +.--...++
T Consensus 63 ~~LIv~p-~~l~~~W~~e~~~~~~~-----~~~~~-~~~~~~~~~----~~~~~vvi~~~~~~~~~~~---l~~~~~~~v 128 (230)
T d1z63a1 63 PSLVICP-LSVLKNWEEELSKFAPH-----LRFAV-FHEDRSKIK----LEDYDIILTTYAVLLRDTR---LKEVEWKYI 128 (230)
T ss_dssp SEEEEEC-STTHHHHHHHHHHHCTT-----SCEEE-CSSSTTSCC----GGGSSEEEEEHHHHTTCHH---HHTCCEEEE
T ss_pred ccceecc-hhhhhHHHHHHHhhccc-----cccee-eccccchhh----ccCcCEEEeeHHHHHhHHH---HhcccceEE
Confidence 5789998 45677788888777643 23222 222211111 1246899999877643211 112245689
Q ss_pred eeccchhhhhccchHHHHHHHhcCCCccCCCCceeEEEEeeccChHHHHHHHH
Q psy8712 366 VLDEADGLLKQGYGNLIDRMHKQIPKITSDGKRLQMIVCSATLHDFDVKKMAE 418 (651)
Q Consensus 366 ViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~~Q~l~~SATl~~~~v~~l~~ 418 (651)
|+||||.+-... ......+..+.. ...+++|||.-.....++..
T Consensus 129 I~DEah~~k~~~--s~~~~~~~~l~a-------~~r~~LTgTPi~n~~~dl~~ 172 (230)
T d1z63a1 129 VIDEAQNIKNPQ--TKIFKAVKELKS-------KYRIALTGTPIENKVDDLWS 172 (230)
T ss_dssp EEETGGGGSCTT--SHHHHHHHTSCE-------EEEEEECSSCSTTCHHHHHH
T ss_pred EEEhhhcccccc--hhhhhhhhhhcc-------ceEEEEecchHHhHHHHHHH
Confidence 999999986532 223333444433 45789999976545555443
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.05 E-value=9.6e-06 Score=78.84 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=67.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhh-HHHHhCCC------cc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRM-EDLISGGH------LS 358 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL-~~ll~~~~------l~ 358 (651)
.+-|++.+--||..=.+++..+.+.++ +++.++..+.+..+..... .+||+.||...+ .|+++.+. ..
T Consensus 123 ~vhvvTvNdyLA~RDae~m~~iy~~lG---lsvg~~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd~~~~~~~~~~ 197 (273)
T d1tf5a3 123 GVHVVTVNEYLASRDAEQMGKIFEFLG---LTVGLNLNSMSKDEKREAY--AADITYSTNNELGFDYLRDNMVLYKEQMV 197 (273)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTT---CCEEECCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCC
T ss_pred CceEEecCccccchhhhHHhHHHHHcC---CCccccccccCHHHHHHHh--hCCceecchhhhhhhhcchhhhcChhhhc
Confidence 367888999999999999999999887 9999998887776655544 489999999988 56666432 23
Q ss_pred cCCcceEeeccchhhh
Q psy8712 359 LTHCRFFVLDEADGLL 374 (651)
Q Consensus 359 l~~l~~lViDEaD~ll 374 (651)
.+.+.+.|+||+|.++
T Consensus 198 ~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 198 QRPLHFAVIDEVDSIL 213 (273)
T ss_dssp CCCCCEEEEETHHHHH
T ss_pred cCCCCEEEEEcchhhh
Confidence 5678999999999876
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.03 E-value=5.5e-06 Score=83.17 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=88.5
Q ss_pred CCCCCeEEEecCCCCceeeeecccccc--CCccccCCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCcc
Q psy8712 249 EPPKDYIAVCNAPKQNVKHSESADVSA--GPVKLVNNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVN 326 (651)
Q Consensus 249 ~~~~~~i~~~~~gsGKT~~~~~a~~~~--~~~~~~~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~ 326 (651)
....+.|.....|.|||..++..++.. ...........+|||+|.. |..|-.+++.++.... +.+..+.|+..
T Consensus 77 ~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~s-l~~qW~~Ei~k~~~~~----~~~v~~~~~~~ 151 (298)
T d1z3ix2 77 ENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS-LVRNWYNEVGKWLGGR----VQPVAIDGGSK 151 (298)
T ss_dssp TTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH-HHHHHHHHHHHHHGGG----CCEEEECSSCH
T ss_pred ccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccch-hhHHHHHHHHhhcCCc----eeEEEEeCchH
Confidence 345567888899999998655443221 1111222345699999985 7889889888876532 45566666654
Q ss_pred HHHHHH---Hhc-----cCCcEEEECchhhHHHHhCCCcccCCcceEeeccchhhhhccchHHHHHHHhcCCCccCCCCc
Q psy8712 327 VKDQMS---VLS-----SGVDIVVGTPGRMEDLISGGHLSLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPKITSDGKR 398 (651)
Q Consensus 327 ~~~q~~---~L~-----~~~dIlV~TP~rL~~ll~~~~l~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~~~~~~~~ 398 (651)
...... ... ...+++|+|.+.+.... ..+.--+..++|+||+|.+-... ......+..+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~--~~l~~~~~~~vI~DEaH~ikn~~--s~~~~a~~~l~~------- 220 (298)
T d1z3ix2 152 DEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD--NQTYLALNSMNA------- 220 (298)
T ss_dssp HHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC--HHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhccCccccceEEEEeecccccch--hcccccceeeeeccccccccccc--chhhhhhhcccc-------
Confidence 332221 111 13579999987765432 22223356799999999986532 222233333332
Q ss_pred eeEEEEeeccCh
Q psy8712 399 LQMIVCSATLHD 410 (651)
Q Consensus 399 ~Q~l~~SATl~~ 410 (651)
...+++|||.-.
T Consensus 221 ~~rllLTGTPi~ 232 (298)
T d1z3ix2 221 QRRVLISGTPIQ 232 (298)
T ss_dssp SEEEEECSSCSG
T ss_pred ceeeeecchHHh
Confidence 467899999754
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.45 E-value=0.00034 Score=63.57 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=78.2
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHHhhccccceeeccccccCCCC
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGID 477 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~l~~td~~~rGID 477 (651)
..++|..+.|.. ..+.+...+... .+.|.+......+++...-...+..-.+..+|+.+.||.|
T Consensus 34 grPVLIgT~SIe--~SE~ls~~L~~~--------------gi~h~vLnAk~~~~Ea~II~~Ag~~g~VtIATNmAGRGtD 97 (175)
T d1tf5a4 34 GQPVLVGTVAVE--TSELISKLLKNK--------------GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTD 97 (175)
T ss_dssp TCCEEEEESCHH--HHHHHHHHHHTT--------------TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEETTSSTTCC
T ss_pred CCCEEEEeCcHH--HHHHHHHHHHHc--------------CCCceeehhhhHHHHHHHHHhccCCCceeehhhHHHcCCC
Confidence 468899999985 444444444221 2334444444333333333355666778899999999999
Q ss_pred CCC---C-----CEEEEeCCCCChhhhhhhcCccccCCCceEEEEeeeCCccc
Q psy8712 478 ISG---L-----PFIINMTLPDDKANYVHRIGRVGRAERMGLAISLVSTVPEK 522 (651)
Q Consensus 478 ip~---v-----~~VIn~dlP~s~~~YihRiGR~GR~g~~G~ai~lv~~~de~ 522 (651)
|.- | =|||.-..|.|..-..|-.||+||.|..|.+..|++-+|+.
T Consensus 98 ikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD~l 150 (175)
T d1tf5a4 98 IKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDEL 150 (175)
T ss_dssp CCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSG
T ss_pred ccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCHHH
Confidence 852 1 17999999999999999999999999999999999886644
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=97.19 E-value=0.0001 Score=73.41 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=64.3
Q ss_pred eeEEEEeeccChHHHHHHHHHhccC-CeEEEccCCCCccCceEEEEEEeCcchHHHHHHHhhccccceeeccccccCCCC
Q psy8712 399 LQMIVCSATLHDFDVKKMAERLMYF-PTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGID 477 (651)
Q Consensus 399 ~Q~l~~SATl~~~~v~~l~~~~l~~-p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~l~~td~~~rGID 477 (651)
-+++.|-.+.. ++..++..+... ...+.+.+... ...... ......+++.+||.+..|||
T Consensus 37 g~~~~F~~s~~--~~~~~a~~L~~~g~~V~~l~~~~~----------------~~e~~~-~~~~~~~~~~~t~~~~~~~~ 97 (299)
T d1yksa2 37 RPTAWFLPSIR--AANVMAASLRKAGKSVVVLNRKTF----------------EREYPT-IKQKKPDFILATDIAEMGAN 97 (299)
T ss_dssp SCEEEECSCHH--HHHHHHHHHHHTTCCEEECCSSSC----------------C---------CCCSEEEESSSTTCCTT
T ss_pred CCEEEEeCCHH--HHHHHHHHHHhcCCeEEEEcCcCc----------------HhHHhh-hhcCCcCEEEEechhhhcee
Confidence 46888888874 777777766543 12222222111 011111 22346789999999999999
Q ss_pred CCCCCEEEEeCCC-------------------CChhhhhhhcCccccCCCceEEEEeeeC
Q psy8712 478 ISGLPFIINMTLP-------------------DDKANYVHRIGRVGRAERMGLAISLVST 518 (651)
Q Consensus 478 ip~v~~VIn~dlP-------------------~s~~~YihRiGR~GR~g~~G~ai~lv~~ 518 (651)
+ +|.+||+.+++ -+..+-.||.||+||.+....++.++..
T Consensus 98 ~-~~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~~ 156 (299)
T d1yksa2 98 L-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 156 (299)
T ss_dssp C-CCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred c-CceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeCC
Confidence 9 59999987763 2456668999999999766666666653
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.0023 Score=65.18 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=29.5
Q ss_pred CCCcHHHHhhHHhHhcCCceEeeecCCCCccce
Q psy8712 23 LLPTDVQAEAIPLILGGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 23 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a 55 (651)
...++.|.+|+..++.++=+++.+|.|||||..
T Consensus 147 ~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~ 179 (359)
T d1w36d1 147 SDEINWQKVAAAVALTRRISVISGGPGTGKTTT 179 (359)
T ss_dssp TTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHH
T ss_pred cccccHHHHHHHHHHcCCeEEEEcCCCCCceeh
Confidence 345788999999999999999999999999965
|
| >d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: 52 kDa Ro protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0062 Score=55.53 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=53.8
Q ss_pred ccccccccccccCCceeEEEEEeccCCceeeccccccccc----cCCCCCCCCCcCC-CCccCCCcccCccCccc---CC
Q psy8712 116 EWHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVR----DLGTDRFGFGFGG-TGKKSNNKQFDNYGEAF---GM 187 (651)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~gg-~~~ks~~~~~~~~g~~~---~~ 187 (651)
.|...-+..+.+ +||+|+||.|.+..-+++|-+...... .++..+.+|..+- .++....... -.++. ..
T Consensus 41 ~~~~VLg~~~f~-sG~HYWEVeV~~~~~w~vGV~~~s~~Rk~~~~~~~~~~~W~l~~~~~~~~~~~~~--~~~~l~~~~~ 117 (179)
T d2iwgb1 41 SYPMVLGAQHFH-SGKHYWEVDVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGTY--PQTPLHLQVP 117 (179)
T ss_dssp SSSCEEBSCCBS-SSEEEEEEECTTCSCEEEEEEETTCCCSSCCCCCTTTTEEEEEEETTTEEEECCS--SCEEECCSSC
T ss_pred cccccccccccc-CCCEEEEEEEeeCCeEEEEEEcCccCcCcccccCCCCCEEEEEEeCCceEEEecC--CCEeEccccC
Confidence 355556666665 799999999999988999987654433 3555555554321 1111111111 01111 22
Q ss_pred CcccccccccCCceeeee
Q psy8712 188 HDVIGCLLDLDNMTVAFT 205 (651)
Q Consensus 188 ~d~ig~~~~~~~~~~~~~ 205 (651)
-..||.+||.+.|+|+|-
T Consensus 118 ~~riGV~LD~e~G~lsFy 135 (179)
T d2iwgb1 118 PCQVGIFLDYEAGMVSFY 135 (179)
T ss_dssp CSEEEEEEETTTTEEEEE
T ss_pred ccEEEEEEecCCCEEEEE
Confidence 357999999999999996
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.20 E-value=0.015 Score=56.65 Aligned_cols=32 Identities=31% Similarity=0.335 Sum_probs=25.9
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCccceee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFC 57 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af~ 57 (651)
.++|-|.+||.. ..+.++|.|+.|||||.+.+
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVIT 32 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHH
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHH
Confidence 368999999965 35679999999999996543
|
| >d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: SPRY domain domain: Similar to Ret finger protein-like 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.019 Score=52.60 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=60.7
Q ss_pred cccccccccccCCceeEEEEEeccCCceeecccccccccc----CCCCCCCCCcCC-CCc--cCCCcccCccCcccCCCc
Q psy8712 117 WHGCRANKGVYGRGKYYYEATVTDEGLCRVGWSTSQAVRD----LGTDRFGFGFGG-TGK--KSNNKQFDNYGEAFGMHD 189 (651)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~gg-~~~--ks~~~~~~~~g~~~~~~d 189 (651)
|...-+..|.+ .|++|+||.|.+..-++||-+....... ++..+.+|..+= .++ ..|+.....- ..-....
T Consensus 51 ~~~VLg~~~fs-sGrHYWEV~V~~~~~w~vGV~~~sv~Rk~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~~l-~~~~~~~ 128 (188)
T d2fbea1 51 ALCVLGTPRFT-SGRHYWEVDVGTSQVWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPL-WVSPQLH 128 (188)
T ss_dssp SCEEEESCCBS-SSEEEEEEECTTCSEEEEEEEETTSCCSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEE-CCCTTCC
T ss_pred eeecccccccc-CCCEEEEEEeeeCCeEEEEEEeCCcCcCcccccCCCCCCEEEEecCCcEEEecCCCceee-ccCCCCC
Confidence 33344455555 7999999999999989999877654432 233333333221 111 1111111000 0113457
Q ss_pred ccccccccCCceeeee--ccCccc----ccccccchhhhhccCcchhhcc
Q psy8712 190 VIGCLLDLDNMTVAFT--KNGQHL----GLAFNISQQLKNSAFYPAVVLK 233 (651)
Q Consensus 190 ~ig~~~~~~~~~~~~~--~ng~~~----g~af~~~~~~~~~~~~p~~~~k 233 (651)
.||.+||.+.|+|+|- .++.++ ...|. +++||++++.
T Consensus 129 rVGV~LDye~G~lSFyn~~~~~~L~tF~~~~F~-------~pl~P~F~~~ 171 (188)
T d2fbea1 129 RVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVC-------EPWRPFFAHK 171 (188)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEECSCCCS-------SCEEEEEEEE
T ss_pred EEEEEEEcCCCEEEEEeCCCCcEEEEECCCCCC-------CCEeCeEECc
Confidence 8999999999999993 333332 23343 4577777654
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=94.73 E-value=0.014 Score=58.84 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=50.1
Q ss_pred eeeccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCce--EEEEeeeCC--ccccc
Q psy8712 465 GVHARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERMG--LAISLVSTV--PEKVW 524 (651)
Q Consensus 465 ~l~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~G--~ai~lv~~~--de~~~ 524 (651)
.+.++.....|||+..+++||+||++-++..+.|++||+-|.|+.. .++.|+... ++++|
T Consensus 174 lLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~ 237 (346)
T d1z3ix1 174 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIL 237 (346)
T ss_dssp EEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHH
T ss_pred eeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHH
Confidence 5667888888999999999999999999999999999999999765 456666664 44443
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.65 E-value=0.011 Score=56.28 Aligned_cols=66 Identities=14% Similarity=0.085 Sum_probs=38.3
Q ss_pred HHHHHhhcccccee-eccccccCCCCCCCCCEEEEeCCCCChhhhhhhcCccccCCCc--eEEEEeeeC
Q psy8712 453 TWGRLRSHIQTDGV-HARDNARPGIDISGLPFIINMTLPDDKANYVHRIGRVGRAERM--GLAISLVST 518 (651)
Q Consensus 453 ~~~~l~~~~~~~~l-~~td~~~rGIDip~v~~VIn~dlP~s~~~YihRiGR~GR~g~~--G~ai~lv~~ 518 (651)
.+......-....+ .++.....|+|+..+++||+||+|.++..+.|++||+-|.|+. -.++.|+..
T Consensus 128 ~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~ 196 (244)
T d1z5za1 128 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 196 (244)
T ss_dssp HHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred hhhhhhccccchhccccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeC
Confidence 33444444334444 4457788899999999999999999999999999999999864 355666665
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=94.49 E-value=0.0026 Score=54.83 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=31.3
Q ss_pred CCceEeeecCCCCccceeehhhHHHHHHHHHHhhhcCCCCCCccccccCceeeeccccccc
Q psy8712 39 GGDVLMAAETGSGKTGAFCLPIIQIVCETLKEIQAGKGQGKAKAQVISPTWILSVWDRDTA 99 (651)
Q Consensus 39 g~dvl~~a~TGsGKT~af~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~ 99 (651)
.+..++.||||||||..+ |.+ +.+ .+.++++++|+..|..|.....
T Consensus 8 ~~~~ll~apTGsGKT~~~--~~~--~~~-----------~~~~vli~~P~~~l~~q~~~~~ 53 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKV--PAA--YAA-----------QGYKVLVLNPSVAATLGFGAYM 53 (136)
T ss_dssp CEEEEEECCTTSCTTTHH--HHH--HHT-----------TTCCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH--HHH--HHH-----------cCCcEEEEcChHHHHHHHHHHH
Confidence 456799999999999543 221 111 1346889999988877765544
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=94.35 E-value=0.28 Score=43.83 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=62.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+-++||.|+|+.-|..+.+.++..+ +++..+.|+.+..+....+. ...+|||+|. +...-++
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~G-------i~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~------v~~~GiD 96 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEHG-------IRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLD 96 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCC
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhcC-------CceEEEecccchHHHHHHHHHHHCCCeEEEEeee------eeeeecc
Confidence 46689999999999999999998765 89999999988766665543 3689999994 4556678
Q ss_pred cCCcceEeeccchh
Q psy8712 359 LTHCRFFVLDEADG 372 (651)
Q Consensus 359 l~~l~~lViDEaD~ 372 (651)
..+++++|+=.++.
T Consensus 97 ip~V~~Vi~~~~~~ 110 (174)
T d1c4oa2 97 IPEVSLVAILDADK 110 (174)
T ss_dssp CTTEEEEEETTTTS
T ss_pred CCCCcEEEEecccc
Confidence 89999999877664
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.52 E-value=0.12 Score=47.51 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=77.3
Q ss_pred ceeEEEEeeccChHHHHHHHHHhccCCeEEEccCCCCccCceEEEEEEeCcchHHHHHHHhhccccceeeccccccCCCC
Q psy8712 398 RLQMIVCSATLHDFDVKKMAERLMYFPTWVDLKGEDAVPETVHHVVVKIDPQQDETWGRLRSHIQTDGVHARDNARPGID 477 (651)
Q Consensus 398 ~~Q~l~~SATl~~~~v~~l~~~~l~~p~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~l~~td~~~rGID 477 (651)
..++++-|.++.. -+.+...+.+ ..|.|.+......+++...-...+..-.+..+|+.+.||-|
T Consensus 34 GqPVLVGT~SVe~--SE~lS~lL~~--------------~gi~h~vLNAK~herEAeIIAqAG~~GaVTIATNMAGRGTD 97 (219)
T d1nkta4 34 GQPVLIGTTSVER--SEYLSRQFTK--------------RRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATNMAGRGTD 97 (219)
T ss_dssp TCCEEEEESCHHH--HHHHHHHHHH--------------TTCCCEEECSSCHHHHHHHHHTTTSTTCEEEEETTCSTTCC
T ss_pred CCCEEEeeCcHHH--HHHHHHHHHH--------------hccchhccchhhHHHHHHHHHhcccCCcEEeeccccCCCCc
Confidence 4678888888742 2333333322 24556666666555555444566777778889999999999
Q ss_pred CCC-----------------------------------------------C-----CEEEEeCCCCChhhhhhhcCcccc
Q psy8712 478 ISG-----------------------------------------------L-----PFIINMTLPDDKANYVHRIGRVGR 505 (651)
Q Consensus 478 ip~-----------------------------------------------v-----~~VIn~dlP~s~~~YihRiGR~GR 505 (651)
|.= | =|||--..-.|..-=-|-.||+||
T Consensus 98 I~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQLRGRsGR 177 (219)
T d1nkta4 98 IVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGR 177 (219)
T ss_dssp CCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSG
T ss_pred eeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccccccccccc
Confidence 932 0 168887777777777788899999
Q ss_pred CCCceEEEEeeeCCcccc
Q psy8712 506 AERMGLAISLVSTVPEKV 523 (651)
Q Consensus 506 ~g~~G~ai~lv~~~de~~ 523 (651)
-|.+|....|++-+|+..
T Consensus 178 QGDPGsSrFflSLeDdLm 195 (219)
T d1nkta4 178 QGDPGESRFYLSLGDELM 195 (219)
T ss_dssp GGCCEEEEEEEETTSHHH
T ss_pred cCCCccceeEEeccHHHH
Confidence 999999999999876554
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=92.89 E-value=0.063 Score=49.65 Aligned_cols=95 Identities=11% Similarity=0.163 Sum_probs=69.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHh----ccCCcEEEECchhhHHHHhCCCc
Q psy8712 282 NNAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVL----SSGVDIVVGTPGRMEDLISGGHL 357 (651)
Q Consensus 282 ~~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L----~~~~dIlV~TP~rL~~ll~~~~l 357 (651)
.++-|+.+|+|..+-...+++.++++.. .+++.++.|-.+.++....+ ....+|||+|. +-..-+
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~~p-----~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt------vIEvGi 97 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAELVP-----EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGI 97 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCT-----TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGS
T ss_pred HcCCeEEEEEcCccchhhHHHHHHHhCC-----ceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh------hhhhcc
Confidence 5677999999998888877777766643 48888888888766555444 23689999996 445567
Q ss_pred ccCCcceEeeccchhhhhccchHHHHHHHhcCCC
Q psy8712 358 SLTHCRFFVLDEADGLLKQGYGNLIDRMHKQIPK 391 (651)
Q Consensus 358 ~l~~l~~lViDEaD~ll~~gf~~~i~~il~~lp~ 391 (651)
+..+..++||..||++- ..++.++.-+.-.
T Consensus 98 DvpnA~~iiI~~a~rfG----LaQLhQLRGRVGR 127 (211)
T d2eyqa5 98 DIPTANTIIIERADHFG----LAQLHQLRGRVGR 127 (211)
T ss_dssp CCTTEEEEEETTTTSSC----HHHHHHHHTTCCB
T ss_pred CCCCCcEEEEecchhcc----ccccccccceeee
Confidence 88999999999999752 2345555555543
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.84 E-value=0.058 Score=52.66 Aligned_cols=31 Identities=35% Similarity=0.440 Sum_probs=26.1
Q ss_pred CCcHHHHhhHHhHhcCCceEeeecCCCCcccee
Q psy8712 24 LPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 56 (651)
Q Consensus 24 ~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~af 56 (651)
.+++-|.++|... ++.++|.|+.|||||.+.
T Consensus 11 ~L~~eQ~~~v~~~--~g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 11 HLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp TSCHHHHHHHHCC--SSCEEEEECTTSCHHHHH
T ss_pred hCCHHHHHHHhCC--CCCEEEEecCCccHHHHH
Confidence 4789999999854 567999999999999654
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=92.41 E-value=0.17 Score=45.65 Aligned_cols=77 Identities=12% Similarity=0.280 Sum_probs=62.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
++.++||.++|++-+..+.+.++..+ +++..+.|+.+..+....+. ...+|||+|. +....++
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~g-------~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd------v~~rGiD 96 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEAG-------IKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLD 96 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTTT-------CCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC------CCSSSCC
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhCC-------cceeEecCCccHHHHHHHHHHHHCCCCCEEEehh------HHHccCC
Confidence 35589999999999999888887664 89999999999877666553 3689999994 4556678
Q ss_pred cCCcceEeeccchh
Q psy8712 359 LTHCRFFVLDEADG 372 (651)
Q Consensus 359 l~~l~~lViDEaD~ 372 (651)
..+++++|.-+++.
T Consensus 97 ip~v~~VI~~d~p~ 110 (181)
T d1t5la2 97 IPEVSLVAILDADK 110 (181)
T ss_dssp CTTEEEEEETTTTS
T ss_pred CCCCCEEEEecCCc
Confidence 89999999888774
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.73 E-value=0.4 Score=42.00 Aligned_cols=74 Identities=12% Similarity=0.206 Sum_probs=57.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.|.|+.-+.++++.+...+ +.+..+.|+.+..+....++ ....|||+|- +-...++
T Consensus 26 ~~~k~iIF~~s~~~~~~l~~~L~~~~-------~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td------v~~rGiD 92 (162)
T d1fuka_ 26 SVTQAVIFCNTRRKVEELTTKLRNDK-------FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGID 92 (162)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCC
T ss_pred CCCcEEEEEEEEchHHHHHHHHhhcC-------ceEEEeccCCchhhHHHHHHHHhhcccceeeccc------ccccccc
Confidence 34579999999999999988887664 78889999988777665553 3689999994 3455677
Q ss_pred cCCcceEeecc
Q psy8712 359 LTHCRFFVLDE 369 (651)
Q Consensus 359 l~~l~~lViDE 369 (651)
+.+++++|.=+
T Consensus 93 i~~v~~VI~~d 103 (162)
T d1fuka_ 93 VQQVSLVINYD 103 (162)
T ss_dssp CCSCSEEEESS
T ss_pred CCCceEEEEec
Confidence 88899888644
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=89.04 E-value=0.58 Score=42.53 Aligned_cols=72 Identities=24% Similarity=0.227 Sum_probs=55.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
.+.++||.++|+.-+..+.+.++..+ +.+..+.|+.+..+....+. ...+|||+|- +....++
T Consensus 29 ~~~~~IIF~~t~~~~~~l~~~l~~~~-------~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd------~~~~GiD 95 (200)
T d1oywa3 29 RGKSGIIYCNSRAKVEDTAARLQSKG-------ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGIN 95 (200)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTC
T ss_pred CCCCEEEEEeeehhhHHhhhhhccCC-------ceeEEecCCCcHHHHHHHHHHHhcccceEEEecc------hhhhccC
Confidence 45579999999999999988887654 78888999988766554443 3689999994 3445677
Q ss_pred cCCcceEee
Q psy8712 359 LTHCRFFVL 367 (651)
Q Consensus 359 l~~l~~lVi 367 (651)
+.++++||.
T Consensus 96 ~p~v~~VI~ 104 (200)
T d1oywa3 96 KPNVRFVVH 104 (200)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEE
Confidence 888988874
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.57 E-value=0.55 Score=41.32 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=55.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.|+++.-+..+.+.+.+.+ +++..+.|+.+..++...+. ...+|||+|- +....+++
T Consensus 27 ~~k~iIF~~~~~~~~~l~~~L~~~~-------~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~------~~~~Gid~ 93 (168)
T d1t5ia_ 27 FNQVVIFVKSVQRCIALAQLLVEQN-------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDI 93 (168)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTT-------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCG
T ss_pred CCeEEEEEeeeecchhhhhhhcccc-------ccccccccccchhhhhhhhhhhccccceeeeccc------cccchhhc
Confidence 4579999999999999988887654 78889999988776665553 3589999994 23445667
Q ss_pred CCcceEeecc
Q psy8712 360 THCRFFVLDE 369 (651)
Q Consensus 360 ~~l~~lViDE 369 (651)
..+.++|.=+
T Consensus 94 ~~~~~vi~~~ 103 (168)
T d1t5ia_ 94 ERVNIAFNYD 103 (168)
T ss_dssp GGCSEEEESS
T ss_pred ccchhhhhhh
Confidence 7777777554
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.57 E-value=0.75 Score=40.42 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=57.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
+..++||.|.|+.-+..++..+...+ +.+..+.|+.+..+....+. ...+|+|+|. +-...++
T Consensus 31 ~~~k~iVF~~~~~~~~~l~~~L~~~g-------~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td------~~~~Gid 97 (171)
T d1s2ma2 31 QINQAIIFCNSTNRVELLAKKITDLG-------YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGID 97 (171)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHT-------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCC
T ss_pred CCCceEEEEeeeehhhHhHHhhhccc-------ccccccccccchhhhhhhhhhcccCccccccchh------Hhhhccc
Confidence 45689999999999999998888764 78888899888766655543 3689999995 3445677
Q ss_pred cCCcceEeeccc
Q psy8712 359 LTHCRFFVLDEA 370 (651)
Q Consensus 359 l~~l~~lViDEa 370 (651)
+.+++++|.=+.
T Consensus 98 ~~~v~~VI~~d~ 109 (171)
T d1s2ma2 98 IQAVNVVINFDF 109 (171)
T ss_dssp CTTEEEEEESSC
T ss_pred cceeEEEEecCC
Confidence 888888886543
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.40 E-value=0.63 Score=40.18 Aligned_cols=72 Identities=7% Similarity=0.144 Sum_probs=53.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCccc
Q psy8712 284 APQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLSL 359 (651)
Q Consensus 284 ~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~l 359 (651)
..++||.++|++-|.++++.++..+ +.+..+.|+.+..+....+. ....|+|+|. .+ ...+++
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~~g-------~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~-----~~-~~Gid~ 94 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRDIG-------FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VM-SRGIDV 94 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTT-------CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----TH-HHHCCC
T ss_pred CCCEEEEECchHHHHHHHhhhcccc-------cccccccccchhhhhhhhhhhhhcccceeeeehh-----HH-hhhhhh
Confidence 4579999999999999999888764 78888999988766665543 3579999994 12 234567
Q ss_pred CCcceEeec
Q psy8712 360 THCRFFVLD 368 (651)
Q Consensus 360 ~~l~~lViD 368 (651)
..++++|.=
T Consensus 95 ~~v~~Vi~~ 103 (155)
T d1hv8a2 95 NDLNCVINY 103 (155)
T ss_dssp SCCSEEEES
T ss_pred ccCcEEEEe
Confidence 788888743
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.59 E-value=1 Score=39.54 Aligned_cols=74 Identities=11% Similarity=0.196 Sum_probs=56.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhc----cCCcEEEECchhhHHHHhCCCcc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLS----SGVDIVVGTPGRMEDLISGGHLS 358 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~----~~~dIlV~TP~rL~~ll~~~~l~ 358 (651)
...++||.|.+++-|..+.+.++..+ +.+..+.|+.+..+....+. ...+|+|+|- +-...++
T Consensus 33 ~~~k~iiF~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td------~~~rGiD 99 (168)
T d2j0sa2 33 TITQAVIFCNTKRKVDWLTEKMREAN-------FTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLD 99 (168)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCC
T ss_pred CCCceEEEeeeHHHHHHHHHHhhhcc-------cchhhhhhhhhHHHHHHHHHHHhcCCccEEeccc------hhccccc
Confidence 34689999999999999998887764 67788899988776655543 3589999994 3455678
Q ss_pred cCCcceEeecc
Q psy8712 359 LTHCRFFVLDE 369 (651)
Q Consensus 359 l~~l~~lViDE 369 (651)
+.++++||.=+
T Consensus 100 i~~v~~VIn~d 110 (168)
T d2j0sa2 100 VPQVSLIINYD 110 (168)
T ss_dssp CTTEEEEEESS
T ss_pred ccCcceEEEec
Confidence 88888887533
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.03 E-value=0.054 Score=50.04 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=34.3
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
-++|+.|+.+|..++.+... .+|.++++++|+|||.++.+.+
T Consensus 18 ~~g~~~pt~iQ~~aip~il~-------------------g~dvl~~A~TGsGKTla~~lp~ 59 (207)
T d1t6na_ 18 DCGFEHPSEVQHECIPQAIL-------------------GMDVLCQAKSGMGKTAVFVLAT 59 (207)
T ss_dssp HTTCCCCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHc-------------------CCCeEEEeccccccccccccce
Confidence 46799999999998855443 3599999999999999988643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=85.50 E-value=0.22 Score=49.06 Aligned_cols=39 Identities=33% Similarity=0.364 Sum_probs=25.7
Q ss_pred HHHHHcCCCCC---cHHHHhhHHh-HhcCCceEeeecCCCCcc
Q psy8712 15 KAVEEMDWLLP---TDVQAEAIPL-ILGGGDVLMAAETGSGKT 53 (651)
Q Consensus 15 ~~l~~~~~~~p---t~iQ~~aip~-il~g~dvl~~a~TGsGKT 53 (651)
..+.+.|+... .+-+.+.+-. +..+++++++++||||||
T Consensus 138 ~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKT 180 (323)
T d1g6oa_ 138 SFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKT 180 (323)
T ss_dssp HHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHH
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccch
Confidence 44556565432 2334444333 457899999999999999
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.20 E-value=0.066 Score=49.34 Aligned_cols=42 Identities=7% Similarity=0.041 Sum_probs=33.9
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
-.+|+.|+.+|.+++.+... .+|.++++++|+|||.++...+
T Consensus 20 ~~g~~~pt~iQ~~aip~il~-------------------g~dvl~~a~TGsGKTlayllP~ 61 (206)
T d1veca_ 20 EMGWEKPSPIQEESIPIALS-------------------GRDILARAKNGTGKSGAYLIPL 61 (206)
T ss_dssp TTTCCSCCHHHHHHHHHHHT-------------------TCCEEEECCSSSTTHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHc-------------------CCCEEeeccCccccccccccch
Confidence 46799999999998844333 2599999999999999987653
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.08 E-value=0.069 Score=49.96 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=34.0
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..+|..|+.+|..++.+... .+|.++++++|+|||.++...+
T Consensus 34 ~~g~~~pt~IQ~~aIp~il~-------------------g~dvi~~a~TGSGKTlayllPi 75 (222)
T d2j0sa1 34 AYGFEKPSAIQQRAIKQIIK-------------------GRDVIAQSQSGTGKTATFSISV 75 (222)
T ss_dssp HHTCCSCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHC-------------------CCCeEEEcCcchhhhhhhcccc
Confidence 45799999999998754333 3589999999999999988654
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=84.07 E-value=0.64 Score=39.61 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=49.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhhccCCCCCeeEEEEeCCccHHHHHHHhccCCcEEEECchhhHHHHhCCCcccCCc
Q psy8712 283 NAPQAIIIEPSRELAEQTFNQIIKFKKFITDPKIRELLIIGGVNVKDQMSVLSSGVDIVVGTPGRMEDLISGGHLSLTHC 362 (651)
Q Consensus 283 ~~p~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~i~v~~l~Gg~~~~~q~~~L~~~~dIlV~TP~rL~~ll~~~~l~l~~l 362 (651)
++.++||.|+|+.-|.++++.++..+ +++..+.++....+. -....+|+|+| +.+..+ ++ .++
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G-------~~~~~~H~~~~~~~~---~~~~~~vlvaT-----d~~~~G-iD-~~v 96 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALG-------INAVAYYRGLDVSVI---PTNGDVVVVAT-----DALMTG-FT-GDF 96 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHT-------CEEEEECTTCCSCCC---TTSSCEEEEES-----SSSCSS-SC-CCB
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccc-------cchhhhhccchhhhh---hhhhcceeehh-----HHHHhc-cc-ccc
Confidence 34579999999999999999998775 788888888774432 13468999999 344445 55 567
Q ss_pred ceEe
Q psy8712 363 RFFV 366 (651)
Q Consensus 363 ~~lV 366 (651)
+++|
T Consensus 97 ~~Vi 100 (138)
T d1jr6a_ 97 DSVI 100 (138)
T ss_dssp SEEE
T ss_pred ceEE
Confidence 7764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=83.64 E-value=1.1 Score=40.90 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=16.6
Q ss_pred CCCeEEEecCCCCceeeeeccc
Q psy8712 251 PKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 251 ~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
|.-+..++.+|+|||+.....+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA 30 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLA 30 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3445568999999999876654
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.14 E-value=0.054 Score=49.75 Aligned_cols=40 Identities=8% Similarity=0.058 Sum_probs=32.3
Q ss_pred cccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeecc
Q psy8712 213 LAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESA 271 (651)
Q Consensus 213 ~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a 271 (651)
.+|+.|+.+|.+++.+... .+|.++++++|+|||.++...
T Consensus 19 ~g~~~pt~iQ~~aip~~l~-------------------G~dvii~a~TGSGKTlayllp 58 (209)
T d1q0ua_ 19 LRFYKPTEIQERIIPGALR-------------------GESMVGQSQTGTGKTHAYLLP 58 (209)
T ss_dssp TTCCSCCHHHHHHHHHHHH-------------------TCCEEEECCSSHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHC-------------------CCCeEeecccccccceeeeee
Confidence 4689999999998854433 348999999999999987654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=81.35 E-value=0.29 Score=49.70 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=19.7
Q ss_pred HHHHhhHHhHh--cCCceEeeecCCCCccce
Q psy8712 27 DVQAEAIPLIL--GGGDVLMAAETGSGKTGA 55 (651)
Q Consensus 27 ~iQ~~aip~il--~g~dvl~~a~TGsGKT~a 55 (651)
+-|.+.+..++ ..+=||+++|||||||-+
T Consensus 144 ~~~~~~l~~l~~~~~GliLvtGpTGSGKSTT 174 (401)
T d1p9ra_ 144 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 174 (401)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhhhhceEEEEcCCCCCccHH
Confidence 44444444444 346699999999999944
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=80.91 E-value=0.12 Score=48.81 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=34.4
Q ss_pred ccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 212 GLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 212 g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
-++|+.|+.+|..++.+... .+|.++++++|+|||.++.+.+
T Consensus 38 ~~g~~~pt~iQ~~~ip~il~-------------------g~dvvi~a~TGsGKTlayllp~ 79 (238)
T d1wrba1 38 LASYQRPTPIQKNAIPAILE-------------------HRDIMACAQTGSGKTAAFLIPI 79 (238)
T ss_dssp TTTCCSCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHhhhhhC-------------------CCCEEEECCCCCCcceeeHHHH
Confidence 46799999999999844332 2589999999999999988765
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=80.77 E-value=0.51 Score=47.98 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhhc
Q psy8712 286 QAIIIEPSRELAEQTFNQIIKFKK 309 (651)
Q Consensus 286 ~aLIL~PTreLa~Qi~~~~~~l~~ 309 (651)
.+|||+|+..+|.|+++.++.|..
T Consensus 58 p~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 58 PTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CEEEEeCCHHHHHHHHHHHHHHcC
Confidence 379999999999999999998863
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=80.61 E-value=1.5 Score=40.20 Aligned_cols=41 Identities=7% Similarity=-0.054 Sum_probs=24.2
Q ss_pred CCCCeEEEecCCCCceeeeeccccccCCccccCCCCeEEEEeCCH
Q psy8712 250 PPKDYIAVCNAPKQNVKHSESADVSAGPVKLVNNAPQAIIIEPSR 294 (651)
Q Consensus 250 ~~~~~i~~~~~gsGKT~~~~~a~~~~~~~~~~~~~p~aLIL~PTr 294 (651)
+|.-+..++.+|+|||+.....++... ..+..-+||=+-|.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~----~~~~kV~lit~Dt~ 50 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV----DEGKSVVLAAADTF 50 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEEEECTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----HCCCceEEEeeccc
Confidence 344456689999999998665443321 12234455555553
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.30 E-value=0.12 Score=47.89 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=34.9
Q ss_pred cccccccchhhhhccCcchhhccccccccccCCCCCCCCCCCCeEEEecCCCCceeeeeccc
Q psy8712 211 LGLAFNISQQLKNSAFYPAVVLKNAEMSFNFGATPFKHEPPKDYIAVCNAPKQNVKHSESAD 272 (651)
Q Consensus 211 ~g~af~~~~~~~~~~~~p~~~~k~~~~~~~f~~~~~~~~~~~~~i~~~~~gsGKT~~~~~a~ 272 (651)
..++|+.|+.+|..++.+... .+|.++++++|+|||.++.+.+
T Consensus 26 ~~~g~~~pt~iQ~~aip~il~-------------------g~dvl~~a~TGsGKT~a~~lp~ 68 (212)
T d1qdea_ 26 FGYGFEEPSAIQQRAIMPIIE-------------------GHDVLAQAQSGTGKTGTFSIAA 68 (212)
T ss_dssp HHHTCCSCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHc-------------------CCCEEeecccccchhhhhHhhh
Confidence 357899999999998854332 4699999999999999987643
|