Psyllid ID: psy8715


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
MCLSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLVTRFRNEE
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEcccccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccEEEEEEEccccEEEEcccccEEEEEccccccccEEcccccEEEEEEEcccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccEEccccccHHHHHHHHcccccccccEEEEccccccccEEHHHHHHHHHHHHHccEEEEEEEcccccEEEcccccEEEEcccccccccEEEccccEEEEEEEEccc
mclspgkrlfhwgpLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATkrkrqdkfvypynlgwkknihlvfgsssisngitwpvvegchqYSLTMEQLEQKNikkahsqpvlvvknyngrclplmfglkvswhtpcfdIARINLQVNETVLVTRFRNEE
mclspgkrlfhwgPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEkatkrkrqdkfvYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLvtrfrnee
MCLSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLVTRFRNEE
******KRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLVTRF****
*****GKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLVTRFR***
MCLSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLVTRFRNEE
MCLSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLVTRFRN**
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MCLSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQDKFVYPYNLGWKKNIHLVFGSSSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLVTRFRNEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query164 2.2.26 [Sep-21-2011]
Q2HJ95413 Palmitoyltransferase ZDHH no N/A 0.859 0.341 0.466 2e-30
Q5REH2413 Palmitoyltransferase ZDHH yes N/A 0.859 0.341 0.466 3e-30
Q9H6R6413 Palmitoyltransferase ZDHH yes N/A 0.859 0.341 0.466 3e-30
Q9CPV7413 Palmitoyltransferase ZDHH yes N/A 0.859 0.341 0.459 5e-30
Q4PE27 604 Palmitoyltransferase PFA4 N/A N/A 0.481 0.130 0.276 0.0004
>sp|Q2HJ95|ZDHC6_BOVIN Palmitoyltransferase ZDHHC6 OS=Bos taurus GN=ZDHHC6 PE=2 SV=1 Back     alignment and function desciption
 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 97/148 (65%), Gaps = 7/148 (4%)

Query: 19  VGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKR----KRQDKFVYPYNLGWK-KNIH 73
           +G  IAVGMLF+ Q+K IL+N+T+IE WI EKA  R    +  + FV+PY++G + KN  
Sbjct: 214 LGTTIAVGMLFFIQMKIILRNKTSIESWIEEKAKDRIQYYQLDEVFVFPYDMGSRWKNFK 273

Query: 74  LVFGSSSI--SNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMF 131
            VF  S +   +G+ WP+ EGCHQYSLT+EQL+QK  K+  S    V+++Y+G C PL  
Sbjct: 274 QVFTWSGVPEGDGLDWPIREGCHQYSLTIEQLKQKADKRVRSVRYKVIEDYSGTCCPLNR 333

Query: 132 GLKVSWHTPCFDIARINLQVNETVLVTR 159
           G+K  + +PC +  RI LQ  E +L TR
Sbjct: 334 GIKTFFTSPCTEEPRIRLQKGEFILATR 361





Bos taurus (taxid: 9913)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -
>sp|Q5REH2|ZDHC6_PONAB Palmitoyltransferase ZDHHC6 OS=Pongo abelii GN=ZDHHC6 PE=3 SV=1 Back     alignment and function description
>sp|Q9H6R6|ZDHC6_HUMAN Palmitoyltransferase ZDHHC6 OS=Homo sapiens GN=ZDHHC6 PE=1 SV=1 Back     alignment and function description
>sp|Q9CPV7|ZDHC6_MOUSE Palmitoyltransferase ZDHHC6 OS=Mus musculus GN=Zdhhc6 PE=2 SV=1 Back     alignment and function description
>sp|Q4PE27|PFA4_USTMA Palmitoyltransferase PFA4 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PFA4 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
289741829 425 DHHC-type Zn-finger protein [Glossina mo 0.871 0.336 0.486 1e-31
66533931 378 PREDICTED: probable palmitoyltransferase 0.878 0.380 0.486 1e-31
383855038 378 PREDICTED: probable palmitoyltransferase 0.871 0.378 0.476 3e-31
380020811 378 PREDICTED: probable palmitoyltransferase 0.878 0.380 0.479 3e-31
270002553 305 hypothetical protein TcasGA2_TC004861 [T 0.871 0.468 0.476 4e-31
307207879 401 Probable palmitoyltransferase ZDHHC6 [Ha 0.871 0.356 0.455 4e-31
91076372 388 PREDICTED: similar to CG5196 CG5196-PA [ 0.871 0.368 0.476 6e-31
307177537 381 Probable palmitoyltransferase ZDHHC6 [Ca 0.871 0.375 0.462 6e-31
350420268 378 PREDICTED: probable palmitoyltransferase 0.878 0.380 0.479 7e-31
195365322 336 GM15471 [Drosophila sechellia] gi|194133 0.878 0.428 0.480 7e-31
>gi|289741829|gb|ADD19662.1| DHHC-type Zn-finger protein [Glossina morsitans morsitans] Back     alignment and taxonomy information
 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/150 (48%), Positives = 99/150 (66%), Gaps = 7/150 (4%)

Query: 19  VGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRKRQ----DKFVYPYNLGWKKNIHL 74
           VGVVIA+GML YFQ+K+I+KNQT IE WI+EKA  R+      D F++PY+LGW++NI  
Sbjct: 197 VGVVIALGMLLYFQLKSIVKNQTAIEMWIIEKALFRRHHNTDLDDFIFPYDLGWRQNIKQ 256

Query: 75  VFGSSSI--SNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPLMF- 131
           VF S  +   NGI WPV EGC +++LT EQL QK  K+A ++    ++   G  +PL   
Sbjct: 257 VFKSECVVRGNGIEWPVREGCDEFTLTREQLAQKFEKRARTRTFKCIRKATGSYVPLWSQ 316

Query: 132 GLKVSWHTPCFDIARINLQVNETVLVTRFR 161
           G +V   TPC D  RI L+ ++ + VTRFR
Sbjct: 317 GFRVCLATPCTDEPRIRLEKDDIIRVTRFR 346




Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66533931|ref|XP_396145.2| PREDICTED: probable palmitoyltransferase ZDHHC6 [Apis mellifera] Back     alignment and taxonomy information
>gi|383855038|ref|XP_003703026.1| PREDICTED: probable palmitoyltransferase ZDHHC6-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380020811|ref|XP_003694272.1| PREDICTED: probable palmitoyltransferase ZDHHC6-like [Apis florea] Back     alignment and taxonomy information
>gi|270002553|gb|EEZ99000.1| hypothetical protein TcasGA2_TC004861 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307207879|gb|EFN85440.1| Probable palmitoyltransferase ZDHHC6 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|91076372|ref|XP_967795.1| PREDICTED: similar to CG5196 CG5196-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307177537|gb|EFN66648.1| Probable palmitoyltransferase ZDHHC6 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350420268|ref|XP_003492455.1| PREDICTED: probable palmitoyltransferase ZDHHC6-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|195365322|ref|XP_002045649.1| GM15471 [Drosophila sechellia] gi|194133188|gb|EDW54704.1| GM15471 [Drosophila sechellia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
UNIPROTKB|F1S5J7413 LOC100156349 "Uncharacterized 0.896 0.355 0.477 6.3e-35
UNIPROTKB|F1S5J9413 LOC100156349 "Uncharacterized 0.896 0.355 0.477 6.3e-35
UNIPROTKB|Q9H6R6413 ZDHHC6 "Palmitoyltransferase Z 0.896 0.355 0.471 1.3e-34
FB|FBgn0038039427 CG5196 [Drosophila melanogaste 0.878 0.337 0.473 1.7e-34
UNIPROTKB|E2R364414 ZDHHC6 "Uncharacterized protei 0.896 0.355 0.471 3.4e-34
UNIPROTKB|F6XXY3413 ZDHHC6 "Uncharacterized protei 0.896 0.355 0.471 3.4e-34
MGI|MGI:1914230413 Zdhhc6 "zinc finger, DHHC doma 0.902 0.358 0.462 5.6e-34
FB|FBgn0035970435 CG4483 [Drosophila melanogaste 0.865 0.326 0.463 2e-30
UNIPROTKB|Q2HJ95413 ZDHHC6 "Palmitoyltransferase Z 0.896 0.355 0.471 2.3e-30
ZFIN|ZDB-GENE-030131-3189412 zdhhc6 "zinc finger, DHHC-type 0.896 0.356 0.465 9.1e-29
UNIPROTKB|F1S5J7 LOC100156349 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 336 (123.3 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 76/159 (47%), Positives = 102/159 (64%)

Query:     9 LFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKR----KRQDKFVYPY 64
             LF  G  LA+ G  IAVGMLF+ Q+K IL+N+T+IE WI EKA  R    +  + FV+PY
Sbjct:   207 LFALG--LAL-GTTIAVGMLFFIQMKIILRNKTSIESWIEEKAKDRIQYYQLDEVFVFPY 263

Query:    65 NLG--WKKNIHLVFGSSSI--SNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVK 120
             ++G  WK N   VF  S +   +G+ WP+ EGCHQYSLT+EQL+QK  K+  S    V++
Sbjct:   264 DMGSRWK-NFKQVFTWSGVPEGDGLEWPIREGCHQYSLTIEQLKQKADKRVRSVRYKVIE 322

Query:   121 NYNGRCLPLMFGLKVSWHTPCFDIARINLQVNETVLVTR 159
             +Y+G C PL  G+K  + +PC +  RI LQ  E VL TR
Sbjct:   323 DYSGSCCPLNKGIKTFFTSPCTEEPRIRLQKGEFVLATR 361


GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|F1S5J9 LOC100156349 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H6R6 ZDHHC6 "Palmitoyltransferase ZDHHC6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0038039 CG5196 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2R364 ZDHHC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6XXY3 ZDHHC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1914230 Zdhhc6 "zinc finger, DHHC domain containing 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0035970 CG4483 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJ95 ZDHHC6 "Palmitoyltransferase ZDHHC6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3189 zdhhc6 "zinc finger, DHHC-type containing 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 164
KOG1314|consensus414 100.0
KOG1315|consensus307 99.05
KOG1313|consensus309 98.74
KOG1311|consensus299 98.52
COG5273309 Uncharacterized protein containing DHHC-type Zn fi 95.67
>KOG1314|consensus Back     alignment and domain information
Probab=100.00  E-value=4.7e-51  Score=352.50  Aligned_cols=161  Identities=42%  Similarity=0.709  Sum_probs=155.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhhhh----cC--CCccCCcccchHhHHHHhh
Q psy8715           3 LSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKRK----RQ--DKFVYPYNLGWKKNIHLVF   76 (164)
Q Consensus         3 ~~~~~~~~~if~~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~rr----~~--~~~~~PYDlG~~~Nl~~Vf   76 (164)
                      +++.++++.+|+++|+++|+|++++||+.|++.|++|+|.||+|+.+|+.+||    .+  +++.+|||+||+.|+++||
T Consensus       181 ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypydlgWr~n~r~vf  260 (414)
T KOG1314|consen  181 FTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPYDLGWRINLREVF  260 (414)
T ss_pred             ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeeccccccccHHHHh
Confidence            56778899999999999999999999999999999999999999999999887    23  7899999999999999999


Q ss_pred             Cc--ccCCCCceecccCCccccccchHHHHHHHHhhhcCCCeEEeeccCceEeee-cccceeecccCCCCcCcccccCCC
Q psy8715          77 GS--SSISNGITWPVVEGCHQYSLTMEQLEQKNIKKAHSQPVLVVKNYNGRCLPL-MFGLKVSWHTPCFDIARINLQVNE  153 (164)
Q Consensus        77 GW--~p~gDGi~wpv~~~c~qy~lt~eql~qk~~kr~r~~~~~~~~~~~g~~~~~-~~g~~~~~~~P~~de~ri~~~~gd  153 (164)
                      -|  .+.|||+.|||.+||+||+||.|||+||++||+|+|.|+|+++++|+|||+ ++|++|++..||+|||||+|+|||
T Consensus       261 ~~~~~~~gdg~~wPv~~gc~qytlt~eql~qk~~kr~rsr~~~~~~~~tG~~~p~~k~G~~v~~~~pc~ddprisL~p~d  340 (414)
T KOG1314|consen  261 FQNKKEEGDGIEWPVVEGCVQYTLTIEQLTQKLDKRGRSRLFKCIEDVTGDCCPIFKQGIKVYEANPCTDDPRISLPPGD  340 (414)
T ss_pred             hhccccCCCCccccccCcccccceeHHHHHHHHHhhcCeEEEEeccCCCCCcccccccceeeeeeccCCCCcccccCCCc
Confidence            98  789999999999999999999999999999999999999999999999998 999999999999999999999999


Q ss_pred             EEEEeeeecc
Q psy8715         154 TVLVTRFRNE  163 (164)
Q Consensus       154 ~~~vtr~~~~  163 (164)
                      .|+|||+..|
T Consensus       341 ~i~~tr~~~~  350 (414)
T KOG1314|consen  341 GIKATRGFNH  350 (414)
T ss_pred             ceeeeeeeec
Confidence            9999999987



>KOG1315|consensus Back     alignment and domain information
>KOG1313|consensus Back     alignment and domain information
>KOG1311|consensus Back     alignment and domain information
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query164
2knc_B79 Integrin beta-3; transmembrane signaling, protein 82.74
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens} Back     alignment and structure
Probab=82.74  E-value=3  Score=28.36  Aligned_cols=52  Identities=8%  Similarity=0.096  Sum_probs=35.4

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHhhhhhhhh
Q psy8715           2 CLSPGKRLFHWGPLLAIVGVVIAVGMLFYFQVKAILKNQTNIEDWIVEKATKR   54 (164)
Q Consensus         2 ~~~~~~~~~~if~~vL~i~v~iavg~Ll~~hi~lIl~NqTTIE~~~~~k~~~r   54 (164)
                      |-.|.. +..++..+++..+++.+.+|++|-+..-+..+-..+.++.++.+..
T Consensus         4 Cp~~~n-~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~   55 (79)
T 2knc_B            4 GSKGPD-ILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAK   55 (79)
T ss_dssp             SCSSSC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            433333 4444455666678888888899988888877777777777766543




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00