Psyllid ID: psy8727

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
MTKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccEEEcccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHccHHHHcccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHccccEccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccEcEEEEEEEcccccHHHHHcccHHHHHHHHHHHHHHccccEcEEEEEccHHHHHHHHHHHHHHHHHHHHHHEEEccccHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHcccccccccHHHHHHHcccEEc
Coil and Loop (DISEMBL)
mtkdrkpeelsvetSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYgdlafskldpknptmQELLKLGylfatpkrdklgrrviiarpgvfnphkytnshmlqihGMTYEtlmedeenqvrgfvhfndgagvsfphltlftpkeAVRIVKngertlpmrhkeihiinchpsvKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYgdlafskldpknptmQELLKLGYIRV
Flexible Loop (DISEMBL)
mtkdrkpeelsvetsvskqglqiakaelredestreDALIQLrqwitknsriqtcRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLfatpkrdklGRRVIIArpgvfnphkytnSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSfphltlftpkeaVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEkirkrikvsviVNARFLLRflrskkfsvpMAEEALERYILLRNTYGDlafskldpknptmqellklgyirv
Low Complexity Region (SEG)
MTKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCrldarfllrflrSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV
Disordered region (IsUnstruct)
*************************************ALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKL**********LKLG****
Disordered Region (DISOPRED)
*****KP***SVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV
Disordered Region (DISEMBL)
********************LQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV
Disordered Region (DISPRO)
*********LSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKDRKPEELSVETSVSKQGxxxxxxxxxxxxxxxxxxxxxLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q5SPP0	329	Clavesin-2 OS=Danio rerio	yes	N/A	0.74	0.674	0.284	3e-17
Q9D3D0	343	Alpha-tocopherol transfer	yes	N/A	0.65	0.568	0.308	4e-17
Q9BTX7	342	Alpha-tocopherol transfer	yes	N/A	0.65	0.570	0.297	1e-16
Q5RFR0	342	Alpha-tocopherol transfer	yes	N/A	0.65	0.570	0.297	1e-16
P10123	317	Retinaldehyde-binding pro	yes	N/A	0.676	0.640	0.298	2e-16
Q9Z275	317	Retinaldehyde-binding pro	no	N/A	0.68	0.643	0.297	3e-16
Q8BG92	327	Clavesin-2 OS=Mus musculu	no	N/A	0.74	0.678	0.275	1e-15
Q95KF7	327	Clavesin-2 OS=Macaca fasc	N/A	N/A	0.74	0.678	0.275	1e-15
Q5SYC1	327	Clavesin-2 OS=Homo sapien	no	N/A	0.74	0.678	0.275	1e-15
P12271	317	Retinaldehyde-binding pro	no	N/A	0.68	0.643	0.292	1e-15

>sp|Q5SPP0|CLVS2_DANRE Clavesin-2 OS=Danio rerio GN=clvs2 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 3/225 (1%)

Query: 12  VETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKF 71
           ++  +S + L+ AK EL+E+  T    + ++R  I     I   R D  F+LRFLR++KF
Sbjct: 4   LQAGLSPETLEKAKVELKENPDTLHQDIQEVRDMIITRPDIGFLRTDDAFILRFLRARKF 63

Query: 72  SVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIAR 131
           +   A   L +Y   R    D+ F  L   +P +++ LK G+       D+ GR++++  
Sbjct: 64  NHFEAFRLLAQYFEYRQQNLDM-FKNLKATDPGIKQALKDGFPGVLSNLDRYGRKILVLF 122

Query: 132 PGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR 191
              ++  +YT   +L+   ++ E ++ED E QV GFV   D +  +F   +  TP     
Sbjct: 123 AANWDQSRYTFVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRL 182

Query: 192 IVKNGERTLPMRHKEIHIINCHPSVKYALDFGLN-LVSEKIRKRI 235
            ++  + + P R   IH +N  P   +AL   +   + +K RKRI
Sbjct: 183 AIEGLQDSFPARFGGIHFVN-QPWYIHALYTVIRPFLKDKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).
Danio rerio (taxid: 7955)

>sp|Q9D3D0|TTPAL_MOUSE Alpha-tocopherol transfer protein-like OS=Mus musculus GN=Ttpal PE=2 SV=3

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 98/198 (49%), Gaps = 3/198 (1%)

Query: 14  TSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSV 73
            S+++  +  A+ EL+E    R   +  LR  + K     +  LD  FLLRFLR++KF  
Sbjct: 34  CSLTEDLVTKAREELQEKPEWRLRDVQALRDMVRKEYPYLSTSLDDAFLLRFLRARKFDY 93

Query: 74  PMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPG 133
             A + L  Y   R ++ ++ FS L P    ++++L  G+L   P  D  G  V+  RP 
Sbjct: 94  DRALQLLVNYHGCRRSWPEV-FSNLRPS--ALKDVLNSGFLTVLPHTDPRGCHVLCIRPD 150

Query: 134 VFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIV 193
            + P  Y  +  ++   +T E L++ EE QV G V   D  GVS    + F P  A +++
Sbjct: 151 RWIPSNYPITENIRAVYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVI 210

Query: 194 KNGERTLPMRHKEIHIIN 211
              +   P+R K +HI+N
Sbjct: 211 GILQDGFPIRIKAVHIVN 228

May act as a protein that binds a hydrophobic ligand.

Mus musculus (taxid: 10090)

>sp|Q9BTX7|TTPAL_HUMAN Alpha-tocopherol transfer protein-like OS=Homo sapiens GN=TTPAL PE=2 SV=2

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 3/198 (1%)

Query: 14  TSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSV 73
            S+++  +  A+ EL+E    R   +  LR  + K     +  LD  FLLRFLR++KF  
Sbjct: 33  CSLTEDLVTKAREELQEKPEWRLRDVQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDY 92

Query: 74  PMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPG 133
             A + L  Y   R ++ ++ F+ L P    ++++L  G+L   P  D  G  V+  RP 
Sbjct: 93  DRALQLLVNYHSCRRSWPEV-FNNLKPS--ALKDVLASGFLTVLPHTDPRGCHVVCIRPD 149

Query: 134 VFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIV 193
            + P  Y  +  ++   +T E L++ EE QV G V   D  GVS    + F P  A +++
Sbjct: 150 RWIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVI 209

Query: 194 KNGERTLPMRHKEIHIIN 211
              +   P+R K +H++N
Sbjct: 210 GILQDGFPIRIKAVHVVN 227

May act as a protein that binds a hydrophobic ligand.

Homo sapiens (taxid: 9606)

>sp|Q5RFR0|TTPAL_PONAB Alpha-tocopherol transfer protein-like OS=Pongo abelii GN=TTPAL PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 3/198 (1%)

Query: 14  TSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSV 73
            S+++  +  A+ EL+E    R   +  LR  + K     +  LD  FLLRFLR++KF  
Sbjct: 33  CSLTEDLVTKAREELQEKPEWRLRDVQALRDMVRKEYPNLSTSLDDAFLLRFLRARKFDY 92

Query: 74  PMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPG 133
             A + L  Y   R ++ ++ F+ L P    ++++L  G+L   P  D  G  V+  RP 
Sbjct: 93  DRALQLLVNYHSCRRSWPEV-FNNLKPS--ALKDVLASGFLTVLPHTDPRGCHVVCIRPD 149

Query: 134 VFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIV 193
            + P  Y  +  ++   +T E L++ EE QV G V   D  GVS    + F P  A +++
Sbjct: 150 RWIPSNYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFGPFIAKKVI 209

Query: 194 KNGERTLPMRHKEIHIIN 211
              +   P+R K +H++N
Sbjct: 210 GILQDGFPIRIKAVHVVN 227

May act as a protein that binds a hydrophobic ligand.

Pongo abelii (taxid: 9601)

>sp|P10123|RLBP1_BOVIN Retinaldehyde-binding protein 1 OS=Bos taurus GN=RLBP1 PE=1 SV=4

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 18/221 (8%)

Query: 2   TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNS----------- 50
           TKD  P      + + +  LQ AK EL E E TRE+A+ +L++ +   +           
Sbjct: 27  TKDHGPV-FGPCSQLPRHTLQKAKDELNEKEETREEAVRELQELVQAEAASGQELAVAVA 85

Query: 51  -RIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELL 109
            R+Q    D+ F LRF+R++KF V  A E L  Y+  R  Y +L F  L P+   ++  +
Sbjct: 86  ERVQG--KDSAFFLRFIRARKFHVGRAYELLRGYVNFRLQYPEL-FDSLSPE--AVRCTV 140

Query: 110 KLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVH 169
           + GY      RDK GR V++     ++  + T   +LQ + +  E L+E+EE Q+ GF  
Sbjct: 141 EAGYPGVLSTRDKYGRVVMLFNIENWDSEEITFDEILQAYCVILEKLLENEETQINGFCI 200

Query: 170 FNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHII 210
             +  G +        P +  ++V   + + P R K IH I
Sbjct: 201 IENFKGFTMQQAAGLRPSDLRKMVDMLQDSFPARFKAIHFI 241

Soluble retinoid carrier essential the proper function of both rod and cone photoreceptors. Participates in the regeneration of active 11-cis-retinol and 11-cis-retinaldehyde, from the inactive 11-trans products of the rhodopsin photocycle and in the de novo synthesis of these retinoids from 11-trans metabolic precursors. The cycling of retinoids between photoreceptor and adjacent pigment epithelium cells is known as the 'visual cycle'.

Bos taurus (taxid: 9913)

>sp|Q9Z275|RLBP1_MOUSE Retinaldehyde-binding protein 1 OS=Mus musculus GN=Rlbp1 PE=2 SV=3

 Score = 85.9 bits (211), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 18/222 (8%)

Query: 2   TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNS----------- 50
           TKD  P      + + +  LQ AK EL E E TRE+A+ +L++ +   +           
Sbjct: 27  TKDHGPV-FGPCSQLPRHTLQKAKDELNEKEETREEAVRELQELVQAQAASGEELALAVA 85

Query: 51  -RIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELL 109
            R+Q    D+ FLLRF+R++KF V  A E L+ Y+  R  Y +L F  L  +   ++  +
Sbjct: 86  ERVQA--RDSAFLLRFIRARKFDVGRAYELLKGYVNFRLQYPEL-FDSLSME--ALRCTI 140

Query: 110 KLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVH 169
           + GY      RDK GR V++     ++  + T   +LQ +    E L+E+EE Q+ GF  
Sbjct: 141 EAGYPGVLSSRDKYGRVVMLFNIENWHCEEVTFDEILQAYCFILEKLLENEETQINGFCI 200

Query: 170 FNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIIN 211
             +  G +        P +  ++V   + + P R K IH I+
Sbjct: 201 VENFKGFTMQQAAGLRPSDLKKMVDMLQDSFPARFKAIHFIH 242

Soluble retinoid carrier essential the proper function of both rod and cone photoreceptors. Participates in the regeneration of active 11-cis-retinol and 11-cis-retinaldehyde, from the inactive 11-trans products of the rhodopsin photocycle and in the de novo synthesis of these retinoids from 11-trans metabolic precursors. The cycling of retinoids between photoreceptor and adjacent pigment epithelium cells is known as the 'visual cycle'.

Mus musculus (taxid: 10090)

>sp|Q8BG92|CLVS2_MOUSE Clavesin-2 OS=Mus musculus GN=Clvs2 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 3/225 (1%)

Query: 12  VETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKF 71
           ++  +S + L+ A+ EL E+  T    + ++R  +     I   R D  F+LRFLR++KF
Sbjct: 4   LQAGLSPETLEKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKF 63

Query: 72  SVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIAR 131
               A   L +Y   R    D+ F      +P +++ LK G+       D  GR++++  
Sbjct: 64  HHFEAFRLLAQYFEYRQQNLDM-FKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLF 122

Query: 132 PGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR 191
              ++  +YT   +L+   ++ E ++ED E QV GFV   D +  +F   +  TP     
Sbjct: 123 AANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPNMLRL 182

Query: 192 IVKNGERTLPMRHKEIHIINCHPSVKYALDFGLN-LVSEKIRKRI 235
            ++  + + P R   IH +N  P   +AL   +   + EK RKRI
Sbjct: 183 AIEGLQDSFPARFGGIHFVN-QPWYIHALYTVIRPFLKEKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|Q95KF7|CLVS2_MACFA Clavesin-2 OS=Macaca fascicularis GN=CLVS2 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 3/225 (1%)

Query: 12  VETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKF 71
           ++  +S + L+ A+ EL E+  T    + ++R  +     I   R D  F+LRFLR++KF
Sbjct: 4   LQAGLSPETLEKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKF 63

Query: 72  SVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIAR 131
               A   L +Y   R    D+ F      +P +++ LK G+       D  GR++++  
Sbjct: 64  HHFEAFRLLAQYFEYRQQNLDM-FKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLF 122

Query: 132 PGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR 191
              ++  +YT   +L+   ++ E ++ED E QV GFV   D +  +F   +  TP     
Sbjct: 123 AANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRL 182

Query: 192 IVKNGERTLPMRHKEIHIINCHPSVKYALDFGLN-LVSEKIRKRI 235
            ++  + + P R   IH +N  P   +AL   +   + EK RKRI
Sbjct: 183 AIEGLQDSFPARFGGIHFVN-QPWYIHALYTVIRPFLKEKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Macaca fascicularis (taxid: 9541)

>sp|Q5SYC1|CLVS2_HUMAN Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 3/225 (1%)

Query: 12  VETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKF 71
           ++  +S + L+ A+ EL E+  T    + ++R  +     I   R D  F+LRFLR++KF
Sbjct: 4   LQAGLSPETLEKARLELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKF 63

Query: 72  SVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIAR 131
               A   L +Y   R    D+ F      +P +++ LK G+       D  GR++++  
Sbjct: 64  HHFEAFRLLAQYFEYRQQNLDM-FKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLF 122

Query: 132 PGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR 191
              ++  +YT   +L+   ++ E ++ED E QV GFV   D +  +F   +  TP     
Sbjct: 123 AANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRL 182

Query: 192 IVKNGERTLPMRHKEIHIINCHPSVKYALDFGLN-LVSEKIRKRI 235
            ++  + + P R   IH +N  P   +AL   +   + EK RKRI
Sbjct: 183 AIEGLQDSFPARFGGIHFVN-QPWYIHALYTVIRPFLKEKTRKRI 226

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|P12271|RLBP1_HUMAN Retinaldehyde-binding protein 1 OS=Homo sapiens GN=RLBP1 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 18/222 (8%)

Query: 2   TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNS----------- 50
           TKD  P      + + +  LQ AK EL E E TRE+A+ +L++ +   +           
Sbjct: 27  TKDHGPV-FGPCSQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVA 85

Query: 51  -RIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELL 109
            R+Q    D+ F LRF+R++KF+V  A E L  Y+  R  Y +L F  L P+   ++  +
Sbjct: 86  ERVQ--EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPEL-FDSLSPE--AVRCTI 140

Query: 110 KLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVH 169
           + GY      RDK GR V++     +   + T   +LQ +    E L+E+EE Q+ GF  
Sbjct: 141 EAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCI 200

Query: 170 FNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIIN 211
             +  G +          +  ++V   + + P R K IH I+
Sbjct: 201 IENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIH 242

Soluble retinoid carrier essential the proper function of both rod and cone photoreceptors. Participates in the regeneration of active 11-cis-retinol and 11-cis-retinaldehyde, from the inactive 11-trans products of the rhodopsin photocycle and in the de novo synthesis of these retinoids from 11-trans metabolic precursors. The cycling of retinoids between photoreceptor and adjacent pigment epithelium cells is known as the 'visual cycle'.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
110749181	337	PREDICTED: cellular retinaldehyde bindin	0.76	0.676	0.720	3e-94
380019226	337	PREDICTED: LOW QUALITY PROTEIN: alpha-to	0.76	0.676	0.716	1e-92
340715507	336	PREDICTED: alpha-tocopherol transfer pro	0.746	0.666	0.715	2e-92
350422844	336	PREDICTED: alpha-tocopherol transfer pro	0.746	0.666	0.715	3e-92
383865213	336	PREDICTED: alpha-tocopherol transfer pro	0.76	0.678	0.703	8e-92
307171939	336	Alpha-tocopherol transfer protein-like [	0.763	0.681	0.691	2e-90
332026664	336	Alpha-tocopherol transfer protein-like p	0.763	0.681	0.7	3e-90
307200053	336	Alpha-tocopherol transfer protein-like [	0.763	0.681	0.686	6e-89
156537793	336	PREDICTED: alpha-tocopherol transfer pro	0.763	0.681	0.665	5e-87
91079032	336	PREDICTED: similar to AGAP004339-PA [Tri	0.823	0.735	0.598	2e-82

>gi|110749181|ref|XP_392138.3| PREDICTED: cellular retinaldehyde binding protein [Apis mellifera]

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 165/229 (72%), Positives = 194/229 (84%), Gaps = 1/229 (0%)

Query: 9   ELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRS 68
           E + E ++SK+  QI+K ELRED++TR+ AL Q+R WI  N RIQ CRLDARFLLRFLR 
Sbjct: 11  EDAYECTLSKETQQISKEELREDKNTRDQALEQIRNWIKLNPRIQNCRLDARFLLRFLRC 70

Query: 69  KKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVI 128
           KKF+VPMAEEA+ERY+LLR  Y   AF+ LD   PTM+ELL LGYLFA P RD  GRRVI
Sbjct: 71  KKFNVPMAEEAIERYLLLRQVYHP-AFNNLDITEPTMEELLSLGYLFAAPGRDSKGRRVI 129

Query: 129 IARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKE 188
           IARPGVF+PHKYTN+ M +IH +TYE LMEDEE+QVRGFVHF DGAGVSFPHLTLFTPKE
Sbjct: 130 IARPGVFDPHKYTNADMCRIHAITYECLMEDEESQVRGFVHFADGAGVSFPHLTLFTPKE 189

Query: 189 AVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
           AVRIVKNGERT+PMRHKE+H IN HPS+K+ALDFG++L+SEKI+KR+K+
Sbjct: 190 AVRIVKNGERTIPMRHKEVHAINTHPSLKFALDFGMSLISEKIKKRVKI 238

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019226|ref|XP_003693513.1| PREDICTED: LOW QUALITY PROTEIN: alpha-tocopherol transfer protein-like [Apis florea]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 164/229 (71%), Positives = 190/229 (82%), Gaps = 1/229 (0%)

Query: 9   ELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRS 68
           E + E ++SK+  QI+K ELRED++TR+ AL Q+R WI  N RIQ CRLDARFLLRFLR 
Sbjct: 11  EDAYECTLSKETQQISKEELREDKNTRDQALEQIRNWIKLNPRIQNCRLDARFLLRFLRC 70

Query: 69  KKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVI 128
           KKF+VPMAEEA+ERY+LLR  Y   AF+ LD   PTM+ELL LGYLFA P RD  GRRVI
Sbjct: 71  KKFNVPMAEEAIERYLLLRQVYHP-AFNNLDITEPTMEELLSLGYLFAAPGRDAKGRRVI 129

Query: 129 IARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKE 188
           IARPGVF+PHKYTN+ M +IH +TYE LMEDEE+QVRGFVHF DGAGVSFPHLTLFTPKE
Sbjct: 130 IARPGVFDPHKYTNADMCRIHAITYECLMEDEESQVRGFVHFADGAGVSFPHLTLFTPKE 189

Query: 189 AVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
           AVRIVKNGERT+PMRHKE+H IN HPS K ALDFG++L+SEKIR  +K+
Sbjct: 190 AVRIVKNGERTIPMRHKEVHAINTHPSXKIALDFGMSLISEKIRNXVKI 238

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715507|ref|XP_003396253.1| PREDICTED: alpha-tocopherol transfer protein-like [Bombus terrestris]

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/225 (71%), Positives = 191/225 (84%), Gaps = 1/225 (0%)

Query: 13  ETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFS 72
           E S+S +  ++AK ELRED++TR+ AL Q+R WI  N RIQ CRLDA+FLLRFLR KKF+
Sbjct: 14  ECSLSTETQKLAKEELREDKNTRDQALEQIRNWIKLNPRIQNCRLDAQFLLRFLRCKKFN 73

Query: 73  VPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARP 132
           VPMAEEA+ERY+LLR  Y   AF+ LD   PTM ELL LGY+FA P RD  GRRVIIARP
Sbjct: 74  VPMAEEAIERYLLLRQVYHP-AFNNLDITEPTMDELLSLGYIFAAPGRDAKGRRVIIARP 132

Query: 133 GVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRI 192
           GVF+PHKYTN+ M +IH +TYE+LMEDEE+QVRGFVHF DGAGVSFPHLTLFTPKEAVRI
Sbjct: 133 GVFDPHKYTNADMCRIHAITYESLMEDEESQVRGFVHFADGAGVSFPHLTLFTPKEAVRI 192

Query: 193 VKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
           VKNGERT+PMRHKE+H IN HPS+K+ALDFG++L+SEKI+KR+K+
Sbjct: 193 VKNGERTIPMRHKEVHAINTHPSLKFALDFGMSLISEKIKKRVKI 237

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422844|ref|XP_003493302.1| PREDICTED: alpha-tocopherol transfer protein-like [Bombus impatiens]

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 161/225 (71%), Positives = 190/225 (84%), Gaps = 1/225 (0%)

Query: 13  ETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFS 72
           E S+S +  ++AK ELRED++TR+ AL Q+R WI  N RIQ CRLDA+FLLRFLR KKF+
Sbjct: 14  ECSLSTETQKLAKEELREDKNTRDQALEQIRNWIKLNPRIQNCRLDAQFLLRFLRCKKFN 73

Query: 73  VPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARP 132
           VPMAEEA+ERY+LLR  Y   AF+ LD   PTM ELL LGY+FA P RD  GRRVIIARP
Sbjct: 74  VPMAEEAIERYLLLRQVYHP-AFNNLDITEPTMDELLSLGYIFAAPGRDAKGRRVIIARP 132

Query: 133 GVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRI 192
           GVF+PHKYTN+ M +IH +TYE LMEDEE+QVRGFVHF DGAGVSFPHLTLFTPKEAVRI
Sbjct: 133 GVFDPHKYTNADMCRIHAITYECLMEDEESQVRGFVHFADGAGVSFPHLTLFTPKEAVRI 192

Query: 193 VKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
           VKNGERT+PMRHKE+H IN HPS+K+ALDFG++L+SEKI+KR+K+
Sbjct: 193 VKNGERTIPMRHKEVHAINTHPSLKFALDFGMSLISEKIKKRVKI 237

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865213|ref|XP_003708069.1| PREDICTED: alpha-tocopherol transfer protein-like [Megachile rotundata]

 Score =  342 bits (878), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 161/229 (70%), Positives = 191/229 (83%), Gaps = 1/229 (0%)

Query: 9   ELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRS 68
           E   E S+S+   ++ K ELRED++TR+ AL Q+R WI  N RIQ CRLDA+FLLRFLR 
Sbjct: 10  EDDYECSLSEDTQKLTKEELREDKNTRDQALQQVRNWIKLNPRIQNCRLDAQFLLRFLRC 69

Query: 69  KKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVI 128
           KKF+VPMAEEA+ERY+LLR  Y   AF+ LD   PTM+EL+ LGYLFA P RD+ GRRVI
Sbjct: 70  KKFNVPMAEEAIERYLLLRQVYHP-AFNNLDMFEPTMEELISLGYLFAVPGRDEKGRRVI 128

Query: 129 IARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKE 188
           IARPGVF+PHKYTN  M +IH +TYETLMEDEENQ+RGFVHF DG GVSFPHLTLFTPKE
Sbjct: 129 IARPGVFDPHKYTNVDMCRIHAITYETLMEDEENQIRGFVHFADGGGVSFPHLTLFTPKE 188

Query: 189 AVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
           AVRIVKNGERT+PMRHKE+H IN HPS+K+ALDFG++L+SEKI+KR+K+
Sbjct: 189 AVRIVKNGERTIPMRHKEVHAINIHPSLKFALDFGMSLISEKIKKRVKI 237

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171939|gb|EFN63565.1| Alpha-tocopherol transfer protein-like [Camponotus floridanus]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/230 (69%), Positives = 190/230 (82%), Gaps = 1/230 (0%)

Query: 8   EELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLR 67
           +E + E ++S++  ++AK ELRED++TR+ AL Q+R WI  N RI+ CRLD RFLL+FLR
Sbjct: 9   DEDNYECTLSEETQKLAKDELREDKNTRDQALEQMRNWIKMNPRIENCRLDGRFLLKFLR 68

Query: 68  SKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRV 127
            KKF+VPMA+EA ERY+LLR  Y   AF  LD   P M+ELL LGYLFA P RD  GRRV
Sbjct: 69  CKKFNVPMAQEATERYLLLRQVYHQ-AFHSLDITEPNMEELLSLGYLFAAPGRDAKGRRV 127

Query: 128 IIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPK 187
           IIARPGVF+PHKYTN  M +IH +TYETLMEDEE+QVRGFVHF DGAGVSFPHLTLFTPK
Sbjct: 128 IIARPGVFDPHKYTNVDMCKIHAITYETLMEDEESQVRGFVHFADGAGVSFPHLTLFTPK 187

Query: 188 EAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
           EAVRIVKNGERT+PMRHKE+H IN HPS+K+ALDFGL+L+S+KI+ RIK+
Sbjct: 188 EAVRIVKNGERTVPMRHKEVHGINSHPSLKFALDFGLSLISDKIKNRIKI 237

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026664|gb|EGI66773.1| Alpha-tocopherol transfer protein-like protein [Acromyrmex echinatior]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 188/230 (81%), Gaps = 1/230 (0%)

Query: 8   EELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLR 67
           +E + E  +S +  +IAK ELRED++TR+ AL Q+R WI  N RIQ CRLDARFLL+FLR
Sbjct: 9   DEDTYECPLSIETQKIAKEELREDKNTRDQALEQMRNWIKMNPRIQNCRLDARFLLKFLR 68

Query: 68  SKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRV 127
            KKF+VPMA+EA ERY+LLR  Y   AF  LD   P M+ELL LGYLFA P RD  GRRV
Sbjct: 69  CKKFNVPMAQEATERYLLLRQVYQQ-AFHALDFTEPNMEELLSLGYLFAAPGRDAKGRRV 127

Query: 128 IIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPK 187
           IIARPGVF+PHKYTN  M +IH +TYETLMEDEE+QV G+VHF DGAGVSFPHLTLFTPK
Sbjct: 128 IIARPGVFDPHKYTNVDMCKIHAITYETLMEDEESQVHGYVHFTDGAGVSFPHLTLFTPK 187

Query: 188 EAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
           EAVRIVKNGERT+PMRHKEI+ IN HPSVK+ALDFG++L+SEKIR R+K+
Sbjct: 188 EAVRIVKNGERTVPMRHKEIYGINSHPSVKFALDFGMSLISEKIRNRVKI 237

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200053|gb|EFN80399.1| Alpha-tocopherol transfer protein-like [Harpegnathos saltator]

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 188/230 (81%), Gaps = 1/230 (0%)

Query: 8   EELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLR 67
           +E   E ++S++  +IAK ELRE ++TR+ AL Q+R WI  N R++ CRLD RFLLRFLR
Sbjct: 9   DEDEYECTLSEETQKIAKDELRETKNTRDQALEQMRNWIKMNPRVENCRLDGRFLLRFLR 68

Query: 68  SKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRV 127
            KKF+VPMA+EA ERY+LLR  Y   AF+ LD     M+ELL LGYLFA P RD  GRRV
Sbjct: 69  CKKFNVPMAQEATERYLLLRQVYHP-AFNHLDITETNMEELLSLGYLFAAPGRDSKGRRV 127

Query: 128 IIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPK 187
           IIARPGVF+PHKYTN  M +IH +TYE+LMEDEE+QVRGFVHF DGAGVSFPHLTLFTPK
Sbjct: 128 IIARPGVFDPHKYTNVDMCKIHAITYESLMEDEESQVRGFVHFADGAGVSFPHLTLFTPK 187

Query: 188 EAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
           EAVRIVKNGERT+PMRHKE+H IN HPS+K+ALDFG++L+SEKI+ RIKV
Sbjct: 188 EAVRIVKNGERTVPMRHKEVHGINAHPSLKFALDFGMSLISEKIKNRIKV 237

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537793|ref|XP_001608054.1| PREDICTED: alpha-tocopherol transfer protein-like [Nasonia vitripennis]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 153/230 (66%), Positives = 187/230 (81%), Gaps = 1/230 (0%)

Query: 8   EELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLR 67
           EE + E  +S++  +IAK ELRED++TR+ AL Q+R WI  N RI+  R+D +FLLRFLR
Sbjct: 9   EEDTYECPLSEETQKIAKEELREDKNTRDQALEQVRSWIKLNPRIENSRMDGKFLLRFLR 68

Query: 68  SKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRV 127
            KKF+VPMA+EA+ERY+LLR  Y   AF  LD     M ELL LGY+FA P RD  GRRV
Sbjct: 69  CKKFNVPMAQEAIERYLLLRQVYHP-AFHNLDINEQVMSELLDLGYIFAVPGRDHKGRRV 127

Query: 128 IIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPK 187
           I+ARPGVF+P+KYTN+ M +IH +TYE LMEDEE+QVRGFVHF DGAGVSFPHLTLFTPK
Sbjct: 128 IVARPGVFDPYKYTNADMCKIHAITYEALMEDEESQVRGFVHFADGAGVSFPHLTLFTPK 187

Query: 188 EAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
           EAVRIVKNGE+TLPMRHKE+H IN HPS+K+ALDFG++L+SEKIR R+++
Sbjct: 188 EAVRIVKNGEKTLPMRHKEVHAINAHPSLKFALDFGMSLISEKIRSRVRI 237

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079032|ref|XP_974956.1| PREDICTED: similar to AGAP004339-PA [Tribolium castaneum] gi|270003667|gb|EFA00115.1| hypothetical protein TcasGA2_TC002931 [Tribolium castaneum]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 152/254 (59%), Positives = 196/254 (77%), Gaps = 7/254 (2%)

Query: 14  TSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSV 73
            ++S++   IAK ELRED+ +R+ AL  +R WI +N RI+ CRLDARFLLRFLR KKFSV
Sbjct: 15  CTLSEELQTIAKEELREDKHSRQTALASMRDWIKQNPRIKNCRLDARFLLRFLRFKKFSV 74

Query: 74  PMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPG 133
            +A+EALERY+LLR T+G +AF+ LD   P M++L   GYLFA PKRD  GRRVIIARPG
Sbjct: 75  TLAQEALERYVLLRQTFG-VAFNCLDITIPMMEDLTNRGYLFACPKRDSKGRRVIIARPG 133

Query: 134 VFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIV 193
           VF+  ++T   M +IHG+ YETLMEDEENQ+RGFVHF DG GV F +LTLFT KEAVRIV
Sbjct: 134 VFDLEQFTQGDMCRIHGIVYETLMEDEENQIRGFVHFADGQGVGFSYLTLFTIKEAVRIV 193

Query: 194 KNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV----IVNARFLLRF 249
           KNGE+TLPMRHKE+H IN HPS+K+ALDFG++L+SEKI+KR+++       + + +L R 
Sbjct: 194 KNGEKTLPMRHKEVHCINAHPSMKFALDFGMSLISEKIKKRVRLYTNLEEALESGYLERD 253

Query: 250 LRSKKFS--VPMAE 261
           +  K++   +PMA+
Sbjct: 254 VLPKEYGGEMPMAQ 267

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
FB|FBgn0035636	324	Cralbp "Cellular retinaldehyde	0.736	0.682	0.436	7.9e-46
FB|FBgn0036289	334	CG10657 [Drosophila melanogast	0.713	0.640	0.376	7.8e-39
FB|FBgn0051636	313	CG31636 [Drosophila melanogast	0.72	0.690	0.255	2.1e-15
FB|FBgn0053965	317	CG33965 [Drosophila melanogast	0.726	0.687	0.252	1.1e-13
FB|FBgn0033437	313	CG12926 [Drosophila melanogast	0.733	0.702	0.248	3.1e-12
FB|FBgn0032783	324	CG10237 [Drosophila melanogast	0.706	0.654	0.277	4.8e-12
ZFIN|ZDB-GENE-041014-313	329	clvs2 "clavesin 2" [Danio reri	0.736	0.671	0.256	9.2e-12
FB|FBgn0053514	311	CG33514 [Drosophila melanogast	0.713	0.688	0.252	9.6e-12
UNIPROTKB|Q5F355	300	TTPAL "Uncharacterized protein	0.73	0.73	0.269	1.1e-11
UNIPROTKB|E1C1U1	316	RLBP1 "Uncharacterized protein	0.8	0.759	0.252	1.9e-11

FB|FBgn0035636 Cralbp "Cellular retinaldehyde binding protein" [Drosophila melanogaster (taxid:7227)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 97/222 (43%), Positives = 139/222 (62%)

Query:    14 TSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCXXXXXXXXXXXXSKKFSV 73
             T + +  L+IAK ELRED  TRE +L QLR W+ KN  +Q              +KKFSV
Sbjct:     9 TGLPEALLKIAKRELREDRCTREQSLEQLRNWVAKNEDLQNVRCDDTFLLRFLRAKKFSV 68

Query:    74 PMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPG 133
             PMAE+ L +Y+ +R T+  ++ ++LD   P + +L+  GY+FA P+RDK GRRV++    
Sbjct:    69 PMAEQTLLKYLNIRRTFPHMS-TQLDYLEPRLGDLIDQGYIFAVPQRDKHGRRVVVINAK 127

Query:   134 VFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIV 193
               NP  +T+    + H +TYE LMED+E Q+ G  H  D AGV+  H+T + P E  RI 
Sbjct:   128 GLNPKIHTSCDQAKAHFLTYECLMEDQETQITGLTHVGDFAGVTTAHVTNWNPTEFARIF 187

Query:   194 KNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRI 235
             K GE++LPMRHKEIH+IN   ++K+ +DF  N VS K++ R+
Sbjct:   188 KWGEQSLPMRHKEIHLINVPSTLKWLIDFVKNRVSSKMKNRL 229

GO:0016918 "retinal binding" evidence=ISS

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

FB|FBgn0036289 CG10657 [Drosophila melanogaster (taxid:7227)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 81/215 (37%), Positives = 131/215 (60%)

Query:    23 IAKAELREDESTREDALIQLRQWITKNSRIQTCXXXXXXXXXXXXSKKFSVPMAEEALER 82
             +AK EL EDE+ R  AL Q R+WI K+  I+ C            +KKFSVP A E LER
Sbjct:    38 VAKEELHEDENIRRQALAQFREWIEKHPHIRKCRTDTVFLLRFLRTKKFSVPSACEMLER 97

Query:    83 YILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTN 142
             Y+ +R  +    F +LD  +P + E+ + GYL   P+RD  GR+VI +    F+P+K+T+
Sbjct:    98 YLTIRQLFPQW-FKQLDINDPAINEIFENGYLVPLPQRDSTGRQVIFSVAAKFDPYKFTS 156

Query:   143 SHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPM 202
               M ++H +  E L++DE++QV G+V+ ND +G++   ++L++  +   IVK  + + PM
Sbjct:   157 VQMARVHSLVCEALLDDEDSQVAGYVYINDESGMNMGFVSLWSLTDLRSIVKCIQNSTPM 216

Query:   203 RHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
             RHKE H +N        ++ G++++S+K++KRI V
Sbjct:   217 RHKETHFVNIPHYANRIIELGVSMLSDKLKKRIIV 251

GO:0016918 "retinal binding" evidence=ISS

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0051636 CG31636 [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 56/219 (25%), Positives = 99/219 (45%)

Query:    22 QIAKAELREDESTREDALIQLRQWITKNSRIQTCXXXXXXXXXXXXSKKFSVPMAEEALE 81
             +I   EL E  +     +  LR W+ K   ++ C            +K FS+  A+E  +
Sbjct:    13 EICIRELNELPARMAQDIEALRDWVLKQPHLRACTDDQFLLAFLRGTK-FSLERAKEKFD 71

Query:    82 RYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPK-RDKLGRRVIIARPGVFNPHKY 140
             R+  L+ +  ++   +    +P + +++++G L   P   D  G RV I R G ++  K+
Sbjct:    72 RFYTLQRSIPEVFNERRLATDPQVLDIVRMGVLLQIPMDADDPGPRVTIIRAGSYDTSKH 131

Query:   141 TNSHMLQIHGMTYETLM-EDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERT 199
                 ++++  M  E +M ED+   V G+V   D AGV+  HL    P+   +     +  
Sbjct:   132 KFQDIIRVGSMFGEIMMFEDDNATVSGYVEIMDMAGVTGSHLFALQPQLLSKFSTYADEA 191

Query:   200 LPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVS 238
             +P R K IH IN   + +   +   +    KI+ RI VS
Sbjct:   192 MPTRQKGIHFINVPAAFETGFNSLRSFFPAKIKSRISVS 230

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

FB|FBgn0053965 CG33965 [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 56/222 (25%), Positives = 102/222 (45%)

Query:    20 GLQ-IAKAELREDESTREDALIQLRQWITKNSRIQTCXXXXXXXXXXXXSKKFSVPMAEE 78
             GLQ +A  EL E  S  E  +  L++W+ K   +  C            SK FS+  A++
Sbjct:    15 GLQKVAIEELNEVPSRVESDIAALKEWLQKQPHLCACLEDQFLLSFLRGSK-FSLEKAKQ 73

Query:    79 ALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATP-KRDKLGRRVIIARPGVFNP 137
              ++R+  L+    ++   +    N  + E+++LG +   P   +  G  V I R G ++ 
Sbjct:    74 KIDRFYSLQAVIPEVFNDQRLVDNAQVLEIIRLGVILRIPLDEEDTGPAVTIIRAGSYDI 133

Query:   138 HKYTNSHMLQIHGMTYETLM-EDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNG 196
             +K+    ++++  M  E +M ED+   V G++   D +GV+  +L    P+   +     
Sbjct:   134 NKFKFQDIIRVGSMFGEIMMLEDDNASVSGYLEIMDMSGVTGANLFALQPQLLSKFSAYA 193

Query:   197 ERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVS 238
             +  +P R K IH IN   + +      L     KI++R+ VS
Sbjct:   194 DEAMPTRQKGIHFINVPKAFETGFKSLLGWFPGKIKERVSVS 235

GO:0008431 "vitamin E binding" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

FB|FBgn0033437 CG12926 [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 56/225 (24%), Positives = 102/225 (45%)

Query:    15 SVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCXXXXXXXXXXXXSKKFSVP 74
             S+S +  + A  EL E     ++ +  LR WI+K   ++                K+S+ 
Sbjct:    11 SLSPELAKKAHDELGEIPDRIDEDIETLRTWISKQPHLKA-RQDAQFLVAFLRGCKYSLE 69

Query:    75 MAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKL-GRRVIIARPG 133
               +  L+ +  +R    +L  +++  +      +L  G L   P+  +  G R+ I+R G
Sbjct:    70 KTKLKLDNFYAMRGAVPELYKNRIVGEKQL--SILDTGCLLRLPQPLQADGPRIHISRYG 127

Query:   134 VFNPHKYTNSHMLQIHGMTYET-LMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRI 192
              ++  KY+ + ++Q++ M  E  + ED+   + GFV   D  GV   HL  F      ++
Sbjct:   128 QYDSKKYSIAEVVQVNTMLGEIQIREDDNAMISGFVEIIDMKGVGAGHLFQFDAVLVKKL 187

Query:   193 VKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
                G++  P R K  H +N   S +  +    +L+SEKIRKR  +
Sbjct:   188 AVLGDKAYPYRPKGFHFVNAPSSAEKFMSIAKSLMSEKIRKRFHI 232

GO:0008431 "vitamin E binding" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

FB|FBgn0032783 CG10237 [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 61/220 (27%), Positives = 101/220 (45%)

Query:    19 QGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCXXXXXXXXXXXXSKKFSVPMAEE 78
             QG ++A  ELRE    +++A  +L + +   + +                 K+    A +
Sbjct:    51 QGKEVAIKELRETPERQKEASKELARLLEAETDLLYPKGNEEWLIRYLRPCKYYPESARD 110

Query:    79 ALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPH 138
              ++RY   +  + D+ ++ L P N     + K   L   P RD+LGRR+++   G    H
Sbjct:   111 LIKRYYAFKVKHADV-YTDLKPSNEA--NIFKHNILTVFPNRDQLGRRILVLELGKRWKH 167

Query:   139 KY-TNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGE 197
             K  T   + +   +  E  M + E Q+ G V   D  G+S      FTP  A RIV   +
Sbjct:   168 KQVTLDEVFKGAVLFLEAAMLEPETQICGAVVIFDMDGLSLQQTWQFTPPFAKRIVDWLQ 227

Query:   198 RTLPMRHKEIHIINCHPSVKYALDFGL--NLVSEKIRKRI 235
              ++P+R K IHI+N  P + + + F L    + EK+R RI
Sbjct:   228 DSVPLRIKAIHIVN-QPKI-FQVVFALFKPFLKEKLRSRI 265

GO:0016918 "retinal binding" evidence=ISS

GO:0008431 "vitamin E binding" evidence=ISS

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-041014-313 clvs2 "clavesin 2" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 9.2e-12, P = 9.2e-12
 Identities = 58/226 (25%), Positives = 104/226 (46%)

Query:    12 VETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCXXXXXXXXXXXXSKKF 71
             ++  +S + L+ AK EL+E+  T    + ++R  I     I               ++KF
Sbjct:     4 LQAGLSPETLEKAKVELKENPDTLHQDIQEVRDMIITRPDIGFLRTDDAFILRFLRARKF 63

Query:    72 SVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIAR 131
             +   A   L +Y   R    D+ F  L   +P +++ LK G+       D+ GR++++  
Sbjct:    64 NHFEAFRLLAQYFEYRQQNLDM-FKNLKATDPGIKQALKDGFPGVLSNLDRYGRKILVLF 122

Query:   132 PGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR 191
                ++  +YT   +L+   ++ E ++ED E QV GFV   D +  +F   +  TP   +R
Sbjct:   123 AANWDQSRYTFVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPS-MLR 181

Query:   192 IVKNG-ERTLPMRHKEIHIINCHPSVKYALDFGLN-LVSEKIRKRI 235
             +   G + + P R   IH +N  P   +AL   +   + +K RKRI
Sbjct:   182 LAIEGLQDSFPARFGGIHFVN-QPWYIHALYTVIRPFLKDKTRKRI 226

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0005768 "endosome" evidence=IEA;ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

FB|FBgn0053514 CG33514 [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 9.6e-12, P = 9.6e-12
 Identities = 55/218 (25%), Positives = 94/218 (43%)

Query:    22 QIAKAELREDESTREDALIQLRQWITKNSRIQTCXXXXXXXXXXXXSKKFSVPMAEEALE 81
             ++AK +L+ED    E  L   + WI +   +                 K+S+  A+  L+
Sbjct:    14 KVAKEQLKEDPERLEADLQAFKTWIEQQPHLNP-RMDDQFLVAFLRGCKYSLERAKSKLD 72

Query:    82 RYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKR-DKLGRRVIIARPGVFNPHKY 140
             +Y  L+  Y D  F   +  +   +E+ + G +   P   ++ G R+ I R G+    KY
Sbjct:    73 KYYTLKTKYPDY-FRVTNTTDSKFREIHQTGAIIYLPTPLNENGPRIGIWRMGLVPVEKY 131

Query:   141 TNSHMLQI-HGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERT 199
             T    +Q+   M    ++ED+   V G V   D  G +  HL   TP  A +     E  
Sbjct:   132 TMLECMQVAQAMQEIAILEDDYANVNGVVFIMDMKGATAAHLFQMTPSMAKKFTVFSEEA 191

Query:   200 LPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
             LP+R K  H IN     +   +    ++S+K++ R+ V
Sbjct:   192 LPLRLKAQHFINTITGFEQLFNMFKPMMSKKMQSRLFV 229

GO:0008431 "vitamin E binding" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q5F355 TTPAL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 63/234 (26%), Positives = 107/234 (45%)

Query:     7 PEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKN-SRIQTCXXXXXXXXXX 65
             P+      S+S   +  A+ EL+E    R   +  LR  + K+   + TC          
Sbjct:    24 PDRPQYVCSLSADLVTKAREELQEKPEWRLRDVQALRDMVCKDYPSLGTCLDDAFLLRFL 83

Query:    66 XXSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGR 125
               ++KF    A + L  Y   R ++ ++ F+ L P    ++ +L+ G++   P+ D  GR
Sbjct:    84 R-ARKFDYDRALQLLVNYHSCRRSWPEV-FNNLKPS--AIKPVLESGFVTVLPRLDPEGR 139

Query:   126 RVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFP---HLT 182
              V+  RP  + P  Y  +  ++   +T E L++ EE QV G V   D  GVS     H  
Sbjct:   140 HVVCIRPDRWTPSHYPITENIRAIYLTLEKLIQSEETQVNGIVILADYKGVSLSKASHFG 199

Query:   183 LFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGL--NLVSEKIRKR 234
              F  K+ + I+++G    P+R K ++IIN  P +   + F +    + EKI  R
Sbjct:   200 PFVAKKVIGILQDG---FPIRIKAVNIIN-EPRIFKGI-FAIIKPFLKEKIANR 248

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E1C1U1 RLBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 176 (67.0 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 65/257 (25%), Positives = 111/257 (43%)

Query:     2 TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQ-TCXXXXX 60
             TKD  P     +  +    LQ AK EL E E  RE A+  LR+ + + +  +  C     
Sbjct:    27 TKDHGPVFGRCQ-QIPPHTLQKAKDELNETEEQREAAVKALRELVQERAGSEDVCKAVAE 85

Query:    61 XXXXXXXS--------KKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLG 112
                    S        +KF V  A + L+ Y+  R  Y +L F  L P+   ++  ++ G
Sbjct:    86 KMQGKDDSFFLRFIRARKFDVHRAYDLLKGYVNFRQQYPEL-FDNLTPE--AVRSTIEAG 142

Query:   113 YLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFND 172
             Y      RDK GR V++     ++  + T   +L+ + +  E L+E+EE Q+ GF    +
Sbjct:   143 YPGILASRDKYGRVVMLFNIENWDYEEITFDEILRAYCVILEKLLENEETQINGFCIIEN 202

Query:   173 GAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIR 232
               G +    +   P E  ++V   + + P R K +H I  H    +   +  N+V   ++
Sbjct:   203 FKGFTMQQASGIKPSELKKMVDMLQDSFPARFKAVHFI--HQPWYFTTTY--NVVKPFLK 258

Query:   233 KRIKVSVIVNARFLLRF 249
              ++   V V+   L  F
Sbjct:   259 SKLLERVFVHGEELESF 275

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	300
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	5e-20
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	3e-18
smart01100	48	smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom	9e-11
pfam03765	48	pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma	1e-06
smart00516	158	smart00516, SEC14, Domain in homologues of a S	4e-05
smart01100	48	smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom	3e-04

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score = 84.2 bits (209), Expect = 5e-20
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 118 PKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYET-LMEDEENQVRGFVHFNDGAGV 176
             RDK GR V+  RPG  +P K +   +++   +  E  L+   E Q+ G     D  G+
Sbjct: 7   HGRDKEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIIDMKGL 66

Query: 177 SFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIK 236
           S  ++  +      +I+K  +   P R  +I I+N               +  K R++I 
Sbjct: 67  SLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPFLDPKTREKIH 126

Query: 237 V 237
            
Sbjct: 127 F 127

Length = 152

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)

Query: 106 QELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSH-MLQIHGMTYETLMEDEENQV 164
           +EL +LG +     RDK GR V+I R G  +  K  +S  +L+    T E L+++++ QV
Sbjct: 2   EELKELGKVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQV 61

Query: 165 RGFVHFNDGAGVSFPHLTLFTP--KEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDF 222
            GFV   D  G+S  HL       K+ ++I+++     P R K ++IIN     K     
Sbjct: 62  EGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDN---YPERLKAVYIINPPWFFKVLWKI 118

Query: 223 GLNLVSEKIRKRIKV 237
               +SEK RK+I  
Sbjct: 119 VKPFLSEKTRKKIVF 133

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain

 Score = 56.0 bits (136), Expect = 9e-11
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 38 ALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERY 83
          AL +LR+ + K+  +   RLD  FLLRFLR++KF V  A+E LE+Y
Sbjct: 3  ALEELRELLEKHPDLLPPRLDDAFLLRFLRARKFDVEKAKEMLEKY 48

Length = 48

>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERY 83
          E+ L +LR+ + +   +   +LD  FLLRFLR++KF V  A + L++ 
Sbjct: 1  EEKLEELREKLQELKDLLKDKLDDAFLLRFLRARKFDVEKAIKMLKKT 48

This all-alpha domain is found to the N-terminus of pfam00650. Length = 48

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 107 ELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLM--EDEENQV 164
           ELLK          DK GR V+I R G F+    T   +L+      E ++  E +   +
Sbjct: 3   ELLKAYIPGGR-GYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGI 61

Query: 165 RGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYAL-DFG 223
            GF    D  G+S  +  L   ++ ++I+   +   P R  +++IIN  P     L    
Sbjct: 62  EGFTVIFDLKGLSMSNPDLSVLRKILKIL---QDHYPERLGKVYIINP-PWFFRVLWKII 117

Query: 224 LNLVSEKIRKRIKV 237
              + EK R++I+ 
Sbjct: 118 KPFLDEKTREKIRF 131

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 15/23 (65%), Positives = 19/23 (82%)

Query: 245 FLLRFLRSKKFSVPMAEEALERY 267
           FLLRFLR++KF V  A+E LE+Y
Sbjct: 26  FLLRFLRARKFDVEKAKEMLEKY 48

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
KOG1471|consensus	317		100.0
KOG1470|consensus	324		100.0
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.97
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.95
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.94
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	99.42
PF03765	55	CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr	98.93
KOG4406|consensus	467		98.09
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	87.46
smart00546	43	CUE Domain that may be involved in binding ubiquit	81.79

>KOG1471|consensus

Probab=100.00  E-value=1.1e-40  Score=305.77  Aligned_cols=240  Identities=28%  Similarity=0.342  Sum_probs=202.6

Q ss_pred             CCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc-cc
Q psy8727          15 SVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG-DL   93 (300)
Q Consensus        15 ~~~~~~~~~~~~el~e~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~-d~   93 (300)
                      +.++.+...+.+++++.++..++.++.+| |+.++|+++....||.+|+|||||++||+++|++++.+++.||.++. |+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~   80 (317)
T KOG1471|consen    2 SLSPMLAKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDE   80 (317)
T ss_pred             CcccccccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCcc
Confidence            35667778889999999999999999999 99999999854689999999999999999999999999999999998 78


Q ss_pred             ccccCCCCCHHHHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCCCC----CHHHH--------HHHHHHHHHHhhcccC
Q psy8727          94 AFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKY----TNSHM--------LQIHGMTYETLMEDEE  161 (300)
Q Consensus        94 ~~~~~~~~~~~~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~----~~~~~--------~r~~~~~le~~~~~~~  161 (300)
                      ++.+.+.. .++..    -+....+|.|+.|+||.+.+.|..+.+..    ...+.        .+.+.+.++......+
T Consensus        81 i~~~~~~~-~~~~~----~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~  155 (317)
T KOG1471|consen   81 IFEDFEED-DELLK----YYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGE  155 (317)
T ss_pred             Hhhccccc-hhhhh----hccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88763322 12222    22334568999999999999999877654    44444        4444455555554446


Q ss_pred             ceeccEEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceE-Ee-c
Q psy8727         162 NQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIK-VS-V  239 (300)
Q Consensus       162 ~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~-~~-~  239 (300)
                      .+++|+++|+|++|++++|+++..++.+++++..+|++||++++++||||+|++|+++|+++||||+++|++||+ ++ +
T Consensus       156 ~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~  235 (317)
T KOG1471|consen  156 RQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSK  235 (317)
T ss_pred             CCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999 55 4


Q ss_pred             ccccc--ccchhh--hcCCCCCchh
Q psy8727         240 IVNAR--FLLRFL--RSKKFSVPMA  260 (300)
Q Consensus       240 ~~~~L--~i~~~~--~eyGG~~~~~  260 (300)
                      +.++|  +||+++  ++|||+++..
T Consensus       236 ~~~~L~k~i~~~~LP~~yGG~~~~~  260 (317)
T KOG1471|consen  236 DKESLLKYIPPEVLPEEYGGTCGDL  260 (317)
T ss_pred             chhhhhhhCCHhhCccccCCCcccc
Confidence            56777  999994  9999999886

>KOG1470|consensus

Probab=100.00  E-value=1.4e-38  Score=283.44  Aligned_cols=196  Identities=18%  Similarity=0.166  Sum_probs=173.5

Q ss_pred             CCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHcCceeeCCCCCCCCCEEEEEecCCC
Q psy8727          56 RLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVF  135 (300)
Q Consensus        56 ~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~d~~~~~~~~~~~~~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~  135 (300)
                      ..+|.+++|||||+||||.+|.+++.+++.||+.++ .  .. .....++...++.|.++.+ |+|++||||+|+++..+
T Consensus        46 ~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~-~--~~-~~~~~Ev~~e~~tGK~yi~-G~D~~gRPVl~~~~~~~  120 (324)
T KOG1470|consen   46 WCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFG-P--EE-VIEADEVAAELETGKAYIL-GHDKDGRPVLYLRPRPH  120 (324)
T ss_pred             cCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcC-C--cc-ccCHHHHHHHhhcCcEEEe-cccCCCCeEEEEecCCC
Confidence            468999999999999999999999999999999987 1  11 1223458889999999888 79999999999988888


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChH
Q psy8727         136 NPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPS  215 (300)
Q Consensus       136 ~~~~~~~~~~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~  215 (300)
                      .++..+..+..|+++|++|.++.....+++++++++|++|+|++|   ++.+..+.+++++|+||||||+..+++|+||+
T Consensus       121 ~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN---~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~i  197 (324)
T KOG1470|consen  121 RQNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSN---PDIKFLKELLHILQDHYPERLGKALLVNAPWI  197 (324)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccC---CCcHHHHHHHHHHHHhChHHhhhhhhcCChHH
Confidence            888889999999999999999743333568899999999999995   57999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCHhhhcceEEecccccc--ccchh-h-hcCCCCCch
Q psy8727         216 VKYALDFGLNLVSEKIRKRIKVSVIVNAR--FLLRF-L-RSKKFSVPM  259 (300)
Q Consensus       216 f~~~w~likpfl~~~t~~Ki~~~~~~~~L--~i~~~-~-~eyGG~~~~  259 (300)
                      |..+|+++||||+++|++||.|..+.+.+  |||++ + ..|||+...
T Consensus       198 F~~~wkiikpflDp~t~~Kv~F~~~~~~l~~~~d~~~l~s~~GG~~~~  245 (324)
T KOG1470|consen  198 FQPFWKIIKPFLDPKTASKVKFVEPKDDLSEYFDESQLPSLFGGKLLF  245 (324)
T ss_pred             HHHHHHHhhhccChhhhceeEEecChhHHHhhCCccccchhhCCCccc
Confidence            99999999999999999999999655556  99999 5 999997743

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.97  E-value=4.6e-31  Score=217.84  Aligned_cols=146  Identities=23%  Similarity=0.238  Sum_probs=119.6

Q ss_pred             cCceeeCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhh-cccC-ceeccEEEEEeCCCCCcccccCCCHHH
Q psy8727         111 LGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLM-EDEE-NQVRGFVHFNDGAGVSFPHLTLFTPKE  188 (300)
Q Consensus       111 ~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~le~~~-~~~~-~~~~g~v~IiD~~g~s~~~~~~~~~~~  188 (300)
                      .+...+++|+|++||||+++++++++++.++.+++++++++++|.++ ..+. .++.|+++|+|++|++++++...+.+.
T Consensus         5 ~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~   84 (159)
T PF00650_consen    5 KSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPISF   84 (159)
T ss_dssp             TTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHHH
T ss_pred             CCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhhh
Confidence            34455667999999999999999999999999999999999999987 3333 688999999999999999887555899


Q ss_pred             HHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEecc--c-ccc--ccchh-h-hcCCCC
Q psy8727         189 AVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVI--V-NAR--FLLRF-L-RSKKFS  256 (300)
Q Consensus       189 ~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~~--~-~~L--~i~~~-~-~eyGG~  256 (300)
                      ++.+++++|++||+|++++|+||+|++|+++|+++++|++++|++||+++++  + ++|  +||++ + ++|||+
T Consensus        85 ~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~lP~~~GG~  159 (159)
T PF00650_consen   85 LKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQLPVEYGGT  159 (159)
T ss_dssp             HHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGSBGGGTSS
T ss_pred             hhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHCchhcCCC
Confidence            9999999999999999999999999999999999999999999999999943  3 456  99999 5 999996

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>smart00516 SEC14 Domain in homologues of a S

Probab=99.95  E-value=4.6e-28  Score=199.63  Aligned_cols=137  Identities=21%  Similarity=0.214  Sum_probs=127.7

Q ss_pred             CCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhhcc--cCceeccEEEEEeCCCCCcccccCCCHHHHHHHHHHh
Q psy8727         119 KRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMED--EENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNG  196 (300)
Q Consensus       119 g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~le~~~~~--~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~l  196 (300)
                      |+|++||||+++++++++++..+.+++++++++++|.++..  ++.++.|+++|+|++|++++|   ++++.+|.+++++
T Consensus        14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~lk~~~~~~   90 (158)
T smart00516       14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN---PDLSVLRKILKIL   90 (158)
T ss_pred             CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc---ccHHHHHHHHHHH
Confidence            79999999999999999999999999999999999998854  567899999999999999987   5789999999999


Q ss_pred             hcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEecc--cccc--ccchh-h-hcCCCCCc
Q psy8727         197 ERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVI--VNAR--FLLRF-L-RSKKFSVP  258 (300)
Q Consensus       197 q~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~~--~~~L--~i~~~-~-~eyGG~~~  258 (300)
                      +++||+|++++||||+|++++++|+++++|+++++++||+++++  .+.|  +||++ + .+|||++.
T Consensus        91 ~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP~~~GG~~~  158 (158)
T smart00516       91 QDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLPEELGGTLD  158 (158)
T ss_pred             HHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCcHhhCCCCC
Confidence            99999999999999999999999999999999999999999954  6677  99999 5 99999873

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.94  E-value=1.7e-26  Score=188.72  Aligned_cols=143  Identities=29%  Similarity=0.289  Sum_probs=126.9

Q ss_pred             ceeeCCCCCCCCCEEEEEecCCCCCCC-CCHHHHHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHHHHH
Q psy8727         113 YLFATPKRDKLGRRVIIARPGVFNPHK-YTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR  191 (300)
Q Consensus       113 ~~~~l~g~Dk~GrpV~~~~~~~~~~~~-~~~~~~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~  191 (300)
                      .+.+.+|+|++||||+++++++.++.. .+.++.+++.++.+|.++..+..+..|+++|+|++|++++++. .+.+.+|+
T Consensus         9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~-~~~~~~k~   87 (157)
T cd00170           9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLL-PDPSLLKK   87 (157)
T ss_pred             cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccc-hhHHHHHH
Confidence            445565689999999999999655544 3559999999999999986665556799999999999999886 67899999


Q ss_pred             HHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEecc-cccc--ccchh-h-hcCCCC
Q psy8727         192 IVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVI-VNAR--FLLRF-L-RSKKFS  256 (300)
Q Consensus       192 ~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~~-~~~L--~i~~~-~-~eyGG~  256 (300)
                      ++++++++||++++++||||+|++|+++|+++++|+++++++||+++++ .++|  +||++ + .+|||+
T Consensus        88 ~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp~~~GG~  157 (157)
T cd00170          88 ILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEEYGGT  157 (157)
T ss_pred             HHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCcHhhCCC
Confidence            9999999999999999999999999999999999999999999999966 7888  99999 5 999996

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=99.42  E-value=1.6e-13  Score=112.16  Aligned_cols=137  Identities=18%  Similarity=0.100  Sum_probs=93.9

Q ss_pred             eCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHHHHHHHHH
Q psy8727         116 ATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKN  195 (300)
Q Consensus       116 ~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~  195 (300)
                      ...|+|++|+||+++...+. ++..   ++-+.+.|++..+...  ....++++|+|++|++..+  ..+...++++...
T Consensus         5 ~~gG~d~~g~pV~~~~~~~~-~~~~---~~~~ll~yl~~~l~~~--~~~~~f~vVid~~~~~~~~--~~~~~~l~~~~~~   76 (149)
T PF13716_consen    5 YPGGRDREGRPVVVFIASRL-PSSD---DLERLLLYLLSTLSEE--VVDKPFSVVIDHTGFSRSS--EPSLSWLKQLYKL   76 (149)
T ss_dssp             EEEEEBTTS-EEEEEEGGG--C-TT---HHHHHHHHHHHHH-TT--TTTS-EEEEEE-TT--GGG-----HHHHHHTTTS
T ss_pred             EecccCCCcCEEEEEECCcC-cchh---hHHHHHHHHHHhhhHH--hcCCCEEEEEEcCCCcccc--CCchHHHHHHHHH
Confidence            34589999999999997777 4333   6666666666655322  2346799999999998754  3467889999999


Q ss_pred             hhcccCceeceEEEEeCChHHHHHH-HHHhhhcCHhh-hcceEEecccccc--ccchh-h-hcCCCCCchh
Q psy8727         196 GERTLPMRHKEIHIINCHPSVKYAL-DFGLNLVSEKI-RKRIKVSVIVNAR--FLLRF-L-RSKKFSVPMA  260 (300)
Q Consensus       196 lq~~yP~rl~~i~ivN~P~~f~~~w-~likpfl~~~t-~~Ki~~~~~~~~L--~i~~~-~-~eyGG~~~~~  260 (300)
                      +...|+..+++++|||++++++.++ .+.+++.+.+. ..||.+.++..+|  +||++ + .+.||+.+..
T Consensus        77 l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~i~~~qL~~~lp~~~~~d  147 (149)
T PF13716_consen   77 LPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKHIDPSQLPESLPGVLQYD  147 (149)
T ss_dssp             S-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGTSGGGG------HHH---
T ss_pred             HHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhhCCHHHhcccCCCEEecC
Confidence            9999999999999999999999999 66678889998 8999999889998  99998 5 8999876543

>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=98.93  E-value=2e-09  Score=72.69  Aligned_cols=48  Identities=35%  Similarity=0.478  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhC-------CCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727          36 EDALIQLRQWITKN-------SRIQTCRLDARFLLRFLRSKKFSVPMAEEALERY   83 (300)
Q Consensus        36 ~~~l~~Lr~~l~~~-------p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~   83 (300)
                      ++++++|++.+...       ++......+|.+++|||||++|||++|.++|.++
T Consensus         1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~llRFLRARkf~v~~A~~mL~~t   55 (55)
T PF03765_consen    1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDDNFLLRFLRARKFDVEKAFKMLKKT   55 (55)
T ss_dssp             HHHHHHHHHHHHH--GGGTHHHTTHTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccchhcccccccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence            47889999999874       1222236899999999999999999999999875

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....

>KOG4406|consensus

Probab=98.09  E-value=2.6e-05  Score=72.00  Aligned_cols=131  Identities=13%  Similarity=0.119  Sum_probs=93.6

Q ss_pred             HHHHHHc--CceeeCCC-CCCCCCEEEEEecCCCCCCCCCHHH--HHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcc
Q psy8727         105 MQELLKL--GYLFATPK-RDKLGRRVIIARPGVFNPHKYTNSH--MLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFP  179 (300)
Q Consensus       105 ~~~~l~~--g~~~~l~g-~Dk~GrpV~~~~~~~~~~~~~~~~~--~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~  179 (300)
                      +-..+.+  +.+.+..+ .|+.||.|+++-+.++-+. ..+++  ++++.++.+|..++..      ++.++=-.|+...
T Consensus        71 fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~-~eld~~~li~~~v~~id~~Ve~D------Yt~vYfh~gl~s~  143 (467)
T KOG4406|consen   71 FYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSS-SELDDIRLISYLVYTIDKYVEND------YTLVYFHHGLPSD  143 (467)
T ss_pred             HHHHHHhhhheeeeccCcccccCCeeEEEEEecCCch-hhhhhHHHHHHHHHHHHHHHhcc------ceeeehhcCCccc
Confidence            4445544  66666655 6999999999998887543 23444  7888899999887443      5556655666544


Q ss_pred             cccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEecccccc
Q psy8727         180 HLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNAR  244 (300)
Q Consensus       180 ~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~~~~~L  244 (300)
                      +-  ...+.+.+...-+-.+|---++.+|+|.+-|+..++|+++|||++.|..+||+-.+.+.+|
T Consensus       144 nk--p~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~lseL  206 (467)
T KOG4406|consen  144 NK--PYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNSLSEL  206 (467)
T ss_pred             cc--chHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeehHHHH
Confidence            32  2344444444444446778899999999999999999999999999999999877555444

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=87.46  E-value=2.4  Score=26.56  Aligned_cols=35  Identities=14%  Similarity=0.298  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHH
Q psy8727          37 DALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEAL   80 (300)
Q Consensus        37 ~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l   80 (300)
                      +.|.+|.+...         .++.....||.+++||++.|...+
T Consensus         2 e~i~~F~~iTg---------~~~~~A~~~L~~~~wdle~Av~~y   36 (43)
T PF14555_consen    2 EKIAQFMSITG---------ADEDVAIQYLEANNWDLEAAVNAY   36 (43)
T ss_dssp             HHHHHHHHHH----------SSHHHHHHHHHHTTT-HHHHHHHH
T ss_pred             HHHHHHHHHHC---------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence            45666666553         366889999999999999998865

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=81.79  E-value=5.2  Score=24.88  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHH
Q psy8727          36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALE   81 (300)
Q Consensus        36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~   81 (300)
                      .+.++.|++.   -|+     +++..+.+.|+++++|++.|...|.
T Consensus         3 ~~~v~~L~~m---FP~-----l~~~~I~~~L~~~~g~ve~~i~~LL   40 (43)
T smart00546        3 DEALHDLKDM---FPN-----LDEEVIKAVLEANNGNVEATINNLL   40 (43)
T ss_pred             HHHHHHHHHH---CCC-----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3456666653   233     5778999999999999999998775

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
3hy5_A	316	Crystal Structure Of Cralbp Length = 316		2e-11
3hx3_A	316	Crystal Structure Of Cralbp Mutant R234w Length = 3		6e-10
1r5l_A	262	Crystal Structure Of Human Alpha-tocopherol Transfe		5e-09
1oip_A	278	The Molecular Basis Of Vitamin E Retention: Structu		5e-09

>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 18/222 (8%)
Query: 2   TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNS----------- 50
           TKD  P      + + +  LQ AK EL E E TRE+A+ +L++ +   +           
Sbjct: 26  TKDHGPV-FGPCSQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVA 84
Query: 51  -RIQTCXXXXXXXXXXXXSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELL 109
            R+Q              ++KF+V  A E L  Y+  R  Y +L F  L P+   ++  +
Sbjct: 85  ERVQ--EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPEL-FDSLSPE--AVRCTI 139
Query: 110 KLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVH 169
           + GY      RDK GR V++     +   + T   +LQ +    E L+E+EE Q+ GF  
Sbjct: 140 EAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCI 199
Query: 170 FNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIIN 211
             +  G +          +  ++V   + + P R K IH I+
Sbjct: 200 IENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIH 241

>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 18/222 (8%)
Query: 2   TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNS----------- 50
           TKD  P      + + +  LQ AK EL E E TRE+A+ +L++ +   +           
Sbjct: 26  TKDHGPV-FGPCSQLPRHTLQKAKDELNEREETREEAVRELQEXVQAQAASGEELAVAVA 84
Query: 51  -RIQTCXXXXXXXXXXXXSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELL 109
            R+Q              ++KF+V  A E L  Y+  R  Y +L F  L P+   ++  +
Sbjct: 85  ERVQ--EKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPEL-FDSLSPE--AVRCTI 139
Query: 110 KLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVH 169
           + GY      RDK GR V +     +   + T   +LQ +    E L+E+EE Q+ GF  
Sbjct: 140 EAGYPGVLSSRDKYGRVVXLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCI 199
Query: 170 FNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIIN 211
             +  G +          +  + V   + + P   K IH I+
Sbjct: 200 IENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIH 241

>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 5/169 (2%)
Query: 68  SKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRV 127
           ++ F + +A   L+ Y   R    +++ + L P+  ++  LLK GY      RD  G +V
Sbjct: 42  ARDFDLDLAWRLLKNYYKWRAECPEIS-ADLHPR--SIIGLLKAGYHGVLRSRDPTGSKV 98
Query: 128 IIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPK 187
           +I R   ++P  +T   + ++  +T E ++++ E Q  G     D  G  F H    TP 
Sbjct: 99  LIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPS 158
Query: 188 EAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLN-LVSEKIRKRI 235
            A +I      + P++ + IH+IN  P + +A+   +   ++EKI++RI
Sbjct: 159 VAKKIAAVLTDSFPLKVRGIHLIN-EPVIFHAVFSXIKPFLTEKIKERI 206

>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 7/172 (4%)
Query: 68  SKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRV 127
           ++ F + +A   L+ Y   R    +++ + L P+  ++  LLK GY      RD  G +V
Sbjct: 58  ARDFDLDLAWRLLKNYYKWRAECPEIS-ADLHPR--SIIGLLKAGYHGVLRSRDPTGSKV 114
Query: 128 IIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPK 187
           +I R   ++P  +T   + ++  +T E ++++ E Q  G     D  G  F H    TP 
Sbjct: 115 LIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPS 174
Query: 188 EAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGL--NLVSEKIRKRIKV 237
            A +I      + P++ + IH+IN  P + +A+ F +    ++EKI++RI +
Sbjct: 175 VAKKIAAVLTDSFPLKVRGIHLIN-EPVIFHAV-FSMIKPFLTEKIKERIHM 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	2e-67
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	1e-10
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	2e-63
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	6e-11
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	9e-26
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	7e-12
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score =  212 bits (541), Expect = 2e-67
 Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 13/234 (5%)

Query: 14  TSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRI----------QTCRLDARFLL 63
           + + +  LQ AK EL E E TRE+A+ +L++ +   +            +    D+ F L
Sbjct: 37  SQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFL 96

Query: 64  RFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKL 123
           RF+R++KF+V  A E L  Y+  R  Y +L F  L P    ++  ++ GY      RDK 
Sbjct: 97  RFIRARKFNVGRAYELLRGYVNFRLQYPEL-FDSLSP--EAVRCTIEAGYPGVLSSRDKY 153

Query: 124 GRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTL 183
           GR V++     +   + T   +LQ +    E L+E+EE Q+ GF    +  G +      
Sbjct: 154 GRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAAS 213

Query: 184 FTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKV 237
               +  ++V   + + P   K IH I+         +     +  K+ +R+ V
Sbjct: 214 LRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV 267

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 243 ARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV 300
           + F LRF+R++KF+V  A E L  Y+  R  Y +L F  L P    ++  ++ GY  V
Sbjct: 92  SGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPEL-FDSLSP--EAVRCTIEAGYPGV 146

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score =  199 bits (509), Expect = 2e-63
 Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 4/203 (1%)

Query: 36  EDALIQLRQWITK-NSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLA 94
           +  L  LR+   +    +    L   FLLRFLR++ F + +A   L+ Y   R    ++ 
Sbjct: 9   QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI- 67

Query: 95  FSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYE 154
            + L P   ++  LLK GY      RD  G +V+I R   ++P  +T   + ++  +T E
Sbjct: 68  SADLHP--RSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSE 125

Query: 155 TLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHP 214
            ++++ E Q  G     D  G  F H    TP  A +I      + P++ + IH+IN   
Sbjct: 126 LIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV 185

Query: 215 SVKYALDFGLNLVSEKIRKRIKV 237
                       ++EKI++RI +
Sbjct: 186 IFHAVFSMIKPFLTEKIKERIHM 208

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 245 FLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYIRV 300
           FLLRFLR++ F + +A   L+ Y   R    ++  + L P   ++  LLK GY  V
Sbjct: 35  FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI-SADLHP--RSIIGLLKAGYHGV 87

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403

 Score =  104 bits (261), Expect = 9e-26
 Identities = 44/236 (18%), Positives = 83/236 (35%), Gaps = 22/236 (9%)

Query: 27  ELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILL 86
           +L   +   ++AL + R+ + ++        D  FLLR+LR++ F +  +E  L +++  
Sbjct: 7   DLSPRQ---KEALAKFRENV-QDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEF 62

Query: 87  RNTYG-DLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNP----HKYT 141
           R     D   S   P      E+++          D  G  V     G  +        +
Sbjct: 63  RKQKDIDNIISWQPP------EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSAS 116

Query: 142 NSHMLQIHGMTYETLMEDEENQ-------VRGFVHFNDGAGVSFPHLTLFTPKEAVRIVK 194
              +L+      E L+++  +Q       V       D  G+   HL     +     + 
Sbjct: 117 KQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLC 176

Query: 195 NGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARFLLRFL 250
             E   P   K + ++        A +     +SE  RK+I V        LL+ +
Sbjct: 177 MFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHI 232

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296

 Score = 63.6 bits (155), Expect = 7e-12
 Identities = 46/169 (27%), Positives = 63/169 (37%), Gaps = 20/169 (11%)

Query: 36  EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG-DLA 94
           E AL +LR+ +     I+  RLD   LLRFLR++KF V +A+E  E     R  YG D  
Sbjct: 31  EKALAELRKLLEDAGFIE--RLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTI 88

Query: 95  FSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNS----HMLQIHG 150
                        L+   Y     K DK GR V     G  N H+         ML+   
Sbjct: 89  LQDFHYDEK---PLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLV 145

Query: 151 MTYETLM--------EDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR 191
             YE+++            + V       D  G+S       +    VR
Sbjct: 146 WEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAY--SVMSYVR 192

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320

 Score = 61.8 bits (150), Expect = 4e-11
 Identities = 48/260 (18%), Positives = 85/260 (32%), Gaps = 39/260 (15%)

Query: 1   MTKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDAR 60
           MT         + +  +  G       L +++   E+AL+Q R  + + +     RLD  
Sbjct: 11  MTTSILDTYPQICSPNALPGT---PGNLTKEQ---EEALLQFRSILLEKN--YKERLDDS 62

Query: 61  FLLRFLRSKKFSVPMAEEALERYILLRNTYG--------DLAFSKLDPKNPTMQELLKLG 112
            LLRFLR++KF +  + E        R  YG        +      D +   + ++    
Sbjct: 63  TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQY 122

Query: 113 YLFATPKRDKLGRRVIIARPGVFNP----HKYTNSHMLQIHGMTYETLM--------EDE 160
           Y       DK GR +  A  G  N        T   ML+     YE              
Sbjct: 123 YH----HVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRA 178

Query: 161 ENQVRGFVHFNDGAGVSFPHLTLFTPKEAVR-IVKNGERTLPMRHKEIHIINCHPSVKYA 219
              +       D  G+S  +         ++ +    +   P R  + +II+  P     
Sbjct: 179 GYLIETSCTVLDLKGISLSNAY--HVLSYIKDVADISQNYYPERMGKFYIIHS-PFGFST 235

Query: 220 LDFGL--NLVSEKIRKRIKV 237
           + F +    +      +I +
Sbjct: 236 M-FKMVKPFLDPVTVSKIFI 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 8e-08
 Identities = 60/341 (17%), Positives = 100/341 (29%), Gaps = 88/341 (25%)

Query: 18  KQGLQIAKAELRE--DESTREDALIQLR----QWITKNSRIQTCRL--------DARFLL 63
           K  +   +AELR        E+ L+ L             +  C++           FL 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLS 282

Query: 64  RFLRSKKFSVPMA-----EEALERYILLRNTYGDLAFSKLDPK-----NPTMQELLKLGY 113
               +       +     +E      LL   Y D     L P+     NP      +L  
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKS---LLLK-YLDCRPQDL-PREVLTTNP-----RRLS- 331

Query: 114 LFATPKRDKLGRRVIIARPGVFNPHKYTN-SHMLQIHGMTYETLMEDEENQV-RGFVHFN 171
           + A   RD L           ++  K+ N   +  I   +   L   E  ++      F 
Sbjct: 332 IIAESIRDGLAT---------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 172 DGAGVSFPHLTLF---TPKEAVRIVKNG--ERTLPMRHKEIHIINCHPSVKYALDFGLNL 226
             A +    L+L      K  V +V N   + +L  +  +   I+        L+  + L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---SIYLELKVKL 439

Query: 227 VSEK-IRKRIKVSVIVNARFLLRFLRSKKFSVP--------------MAEEALERYILLR 271
            +E  + + I     V+   + +   S     P                 E  ER  L R
Sbjct: 440 ENEYALHRSI-----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 272 NTYGDLAF--SKL----------DPKNPTMQELLK-LGYIR 299
             + D  F   K+               T+Q+L     YI 
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 50/338 (14%), Positives = 99/338 (29%), Gaps = 87/338 (25%)

Query: 2   TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSR---------- 51
           T+ R+P  ++      +  L        +   +R    ++LRQ + +             
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 52  --------IQTCRLDARFLLRF------LRSKKFSVPMAE-EALER-YILLRNTYGDLAF 95
                   +  C    +   +       L  K  + P    E L++    +   +   + 
Sbjct: 160 GSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 96  SKLDPKNPTMQELLKLGYLFATPK--------RDKLGRRVIIARPGVFNPH-KYTNSHML 146
              + K        +L  L  +           +    +   A    FN   K       
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCK------- 267

Query: 147 QIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTL-FTPKEAVRI----VKNGERTLP 201
                    L+     QV  F+       +S  H ++  TP E   +    +    + LP
Sbjct: 268 --------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 202 MRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSVIVNARF-LLRFLRSKKFS--VP 258
              +E+     +P         L++++E IR  +       A +   + +   K +  + 
Sbjct: 320 ---REVLTT--NP-------RRLSIIAESIRDGL-------ATWDNWKHVNCDKLTTIIE 360

Query: 259 MAEEALERYILLRNTYGDLA-FSKLDPKNPTMQELLKL 295
            +   LE     R  +  L+ F       PT   LL L
Sbjct: 361 SSLNVLEPA-EYRKMFDRLSVFPP-SAHIPT--ILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	100.0
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	100.0
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	100.0
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	100.0
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	100.0
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	99.13
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	98.99
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	84.69
1ufz_A	83	Hypothetical protein BAB28515; HBS1-like domain, s	82.8

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=100.00  E-value=6.1e-59  Score=424.93  Aligned_cols=257  Identities=25%  Similarity=0.333  Sum_probs=211.6

Q ss_pred             CCCCCCccCcccCCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhCCCCCC----------CCCCHHHHHHHHhhcCC
Q psy8727           2 TKDRKPEELSVETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQT----------CRLDARFLLRFLRSKKF   71 (300)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~el~e~~e~~~~~l~~Lr~~l~~~p~l~~----------~~~dd~~llRFLra~~~   71 (300)
                      |-+|+|..|+...++|+++++.|++||+|+++.++++|++||+|++++||+++          ++.||.+|+||||||+|
T Consensus        25 ~~~~~~~~~~~~~~l~~~~~~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkf  104 (316)
T 3hx3_A           25 TTKDHGPVFGPCSQLPRHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKF  104 (316)
T ss_dssp             -------------------------------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTT
T ss_pred             hhccCCccccCCCCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCC
Confidence            56899999985559999999999999999999999999999999999999741          46899999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccccCCCCCHHHHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHH
Q psy8727          72 SVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGM  151 (300)
Q Consensus        72 dv~~A~~~l~~~~~~R~~~~d~~~~~~~~~~~~~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~  151 (300)
                      |+++|.++|++|++||+.++ ++|.+.++  ++++..++.|++++++|+|++||||+++++|++|+++++.++++|++++
T Consensus       105 dv~kA~~~L~~~l~wR~~~~-~~~~~~~~--~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~  181 (316)
T 3hx3_A          105 NVGRAYELLRGYVNFRLQYP-ELFDSLSP--EAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCF  181 (316)
T ss_dssp             CHHHHHHHHHHHHHHHHHCG-GGTTTCCH--HHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCc-hhhcCCCH--HHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999 88877654  4678889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhh
Q psy8727         152 TYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKI  231 (300)
Q Consensus       152 ~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t  231 (300)
                      ++|.++.+++.++.|+++|+|++|+|++|+++++++.+|+++.++|++||+|++++||||+|++|+++|+++||||+++|
T Consensus       182 ~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt  261 (316)
T 3hx3_A          182 ILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKL  261 (316)
T ss_dssp             HHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHH
T ss_pred             HHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHh
Confidence            99999877677899999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             hcceEEe-cccccc--ccchh-h-hcCCCCCchhH
Q psy8727         232 RKRIKVS-VIVNAR--FLLRF-L-RSKKFSVPMAE  261 (300)
Q Consensus       232 ~~Ki~~~-~~~~~L--~i~~~-~-~eyGG~~~~~~  261 (300)
                      ++||+|| +++++|  +||++ + ++|||+++..+
T Consensus       262 ~~KI~~~~~~~~~L~~~I~~~~LP~eyGG~~~~~d  296 (316)
T 3hx3_A          262 LERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYD  296 (316)
T ss_dssp             HTTEEEEETCCHHHHHHSCGGGSBGGGTSSBCCCC
T ss_pred             hhheEEeCCCHHHHHhhCCHhhCcHhhCCCCCCcC
Confidence            9999999 568888  99999 5 99999998554

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=100.00  E-value=9.1e-52  Score=367.80  Aligned_cols=241  Identities=24%  Similarity=0.302  Sum_probs=214.6

Q ss_pred             ChhHHHHHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhccccccccCCCCCHHHHHH
Q psy8727          31 DESTREDALIQLRQWITKNS--RIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPKNPTMQEL  108 (300)
Q Consensus        31 ~~e~~~~~l~~Lr~~l~~~p--~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~d~~~~~~~~~~~~~~~~  108 (300)
                      .++.++++|++||+|+++++  +++. ..||.+|+|||||++||+++|.++|+++++||+.++ +++.+.++.  ++.+.
T Consensus         4 ls~~~~~~l~~lr~~l~~~~~~~~~~-~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~-~i~~~~~~~--~~~~~   79 (262)
T 1r5l_A            4 MSPLLQPGLAALRRRAREAGVPLAPL-PLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP-EISADLHPR--SIIGL   79 (262)
T ss_dssp             -----CTTHHHHHHHHHHHTCCCSSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH-HHHSCCCGG--GTHHH
T ss_pred             ccHHHHHHHHHHHHHHHhCCcccCCC-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh-HhhhcCChH--HHHHH
Confidence            44566789999999999875  4444 689999999999999999999999999999999998 887766653  47788


Q ss_pred             HHcCceeeCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHH
Q psy8727         109 LKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKE  188 (300)
Q Consensus       109 l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~  188 (300)
                      ++.|++.+++|+|++||||+++++|+++++.++..+++|+.++++|.++.+++.++.|+++|+|++|+|++|+++++++.
T Consensus        80 ~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~  159 (262)
T 1r5l_A           80 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSV  159 (262)
T ss_dssp             HHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHH
T ss_pred             HHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHH
Confidence            89999999999999999999999999999999999999999999999887666678999999999999999998889999


Q ss_pred             HHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEec-cc-ccc--ccchh-h-hcCCCCCchhHH
Q psy8727         189 AVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV-IV-NAR--FLLRF-L-RSKKFSVPMAEE  262 (300)
Q Consensus       189 ~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~-~~-~~L--~i~~~-~-~eyGG~~~~~~~  262 (300)
                      +|.+++++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ ++ ++|  +|| + + ++|||+++..++
T Consensus       160 ~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~~~~~~~  238 (262)
T 1r5l_A          160 AKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMED  238 (262)
T ss_dssp             HHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTCSSCCHHH
T ss_pred             HHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999994 44 677  999 8 5 999999998888


Q ss_pred             HHHHHHHHHHhchh
Q psy8727         263 ALERYILLRNTYGD  276 (300)
Q Consensus       263 ~~~~~~~~~~~~~~  276 (300)
                      ..+.|.+....+.+
T Consensus       239 ~~~~w~~~l~~~~~  252 (262)
T 1r5l_A          239 ICQEWTNFIMKSED  252 (262)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888777666554

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=100.00  E-value=1.2e-47  Score=347.45  Aligned_cols=241  Identities=22%  Similarity=0.210  Sum_probs=201.9

Q ss_pred             ccCCCCHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc
Q psy8727          12 VETSVSKQGLQIAKAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG   91 (300)
Q Consensus        12 ~~~~~~~~~~~~~~~el~e~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~   91 (300)
                      |....+|+.   ....+++.++.++++|++||+|++++|+ +. ..||.+|+|||||++||+++|.++|+++++||+.++
T Consensus        10 ~~~~~~~~~---~~~~~~~l~~~q~~~l~~lr~~l~~~~~-~~-~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~   84 (296)
T 1aua_A           10 YPQNCPPDA---LPGTPGNLDSAQEKALAELRKLLEDAGF-IE-RLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG   84 (296)
T ss_dssp             SCCCCCTTS---CTTSTTTCCTTHHHHHHHHHHHHHHTTC-CS-SCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCccc---CCCCCCCCCHHHHHHHHHHHHHHHhcCC-CC-CCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence            444444442   2344567788889999999999999984 33 689999999999999999999999999999999996


Q ss_pred             -ccccccCCCCCHHHHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCCC----CCHHHHHHHHHHHHHHhhcc-------
Q psy8727          92 -DLAFSKLDPKNPTMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHK----YTNSHMLQIHGMTYETLMED-------  159 (300)
Q Consensus        92 -d~~~~~~~~~~~~~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~----~~~~~~~r~~~~~le~~~~~-------  159 (300)
                       ++++.+.++..   ...+...+...++|+|++||||+++++|++|+++    .+.+++++++++.+|.+++.       
T Consensus        85 ~~~i~~~~~~~~---~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~  161 (296)
T 1aua_A           85 TDTILQDFHYDE---KPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSR  161 (296)
T ss_dssp             GGGHHHHCCCTT---HHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             cchhhhccccCc---HHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             68887766532   2233444444567999999999999999998754    58999999999999987532       


Q ss_pred             -cCceeccEEEEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEe
Q psy8727         160 -EENQVRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVS  238 (300)
Q Consensus       160 -~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~  238 (300)
                       .+.++.|+++|+|++|+|++|++++ ++++|.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|+
T Consensus       162 ~~g~~v~~~~~I~D~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~  240 (296)
T 1aua_A          162 AAGHLVETSCTIMDLKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFIL  240 (296)
T ss_dssp             HHTSCCCCEEEEEECTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEEC
T ss_pred             hcCCCceeEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEe
Confidence             2345789999999999999998765 78999999999999999999999999999999999999999999999999999


Q ss_pred             c-cc-ccc--ccchh-h-hcCCCCCchhH
Q psy8727         239 V-IV-NAR--FLLRF-L-RSKKFSVPMAE  261 (300)
Q Consensus       239 ~-~~-~~L--~i~~~-~-~eyGG~~~~~~  261 (300)
                      + ++ ++|  +||++ + ++|||++++..
T Consensus       241 ~~~~~~~L~~~i~~~~LP~~yGG~~~~~~  269 (296)
T 1aua_A          241 GSSYQKELLKQIPAENLPVKFGGKSEVDE  269 (296)
T ss_dssp             CSCCHHHHTTTSCSSSSBGGGTSCBCCCG
T ss_pred             CcccHHHHHhhCCHhhCcHHhCCCCCCCC
Confidence            4 43 557  99999 5 99999997764

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=100.00  E-value=6.8e-47  Score=345.56  Aligned_cols=250  Identities=19%  Similarity=0.177  Sum_probs=206.9

Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc-ccccccCCCCCH
Q psy8727          25 KAELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG-DLAFSKLDPKNP  103 (300)
Q Consensus        25 ~~el~e~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~-d~~~~~~~~~~~  103 (300)
                      ...+|..++.++++|++||+|++++|+. . +.||.+|+|||||++||+++|.++|+++++||+.++ |+++.+.++..+
T Consensus        29 ~g~~~~lt~~q~~~l~~lR~~l~~~~~~-~-~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~  106 (320)
T 3q8g_A           29 PGTPGNLTKEQEEALLQFRSILLEKNYK-E-RLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKE  106 (320)
T ss_dssp             TTSTTCCCHHHHHHHHHHHHHHHHTTCC-S-SCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhcCCC-C-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccc
Confidence            3456788888999999999999999854 3 689999999999999999999999999999999998 777765443210


Q ss_pred             --H-HHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCCC----CCHHHHHHHHHHHHHHhhcc--------cCceeccEE
Q psy8727         104 --T-MQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHK----YTNSHMLQIHGMTYETLMED--------EENQVRGFV  168 (300)
Q Consensus       104 --~-~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~----~~~~~~~r~~~~~le~~~~~--------~~~~~~g~v  168 (300)
                        + -...+...+..+++|+|++||||+++++|++|+++    .+.++++|++++.+|.+++.        .+..+.+++
T Consensus       107 ~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~  186 (320)
T 3q8g_A          107 AEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSC  186 (320)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEE
T ss_pred             cchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeE
Confidence              0 12234444556677999999999999999999875    37899999999999987521        122467789


Q ss_pred             EEEeCCCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEec-c-cccc--
Q psy8727         169 HFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV-I-VNAR--  244 (300)
Q Consensus       169 ~IiD~~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~-~-~~~L--  244 (300)
                      +|+|++|+|++|++++ ++++|.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ + .++|  
T Consensus       187 ~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~  265 (320)
T 3q8g_A          187 TVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLK  265 (320)
T ss_dssp             EEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHH
T ss_pred             EEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHh
Confidence            9999999999998765 789999999999999999999999999999999999999999999999999994 4 3677  


Q ss_pred             ccchh-h-hcCCCCCchhHHHHHHHHHHHHhchhhhhhcCCCC-Chh
Q psy8727         245 FLLRF-L-RSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPK-NPT  288 (300)
Q Consensus       245 ~i~~~-~-~eyGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  288 (300)
                      +||++ + ++|||++++.+           .-+++..++.+|| +|.
T Consensus       266 ~i~~~~LP~~yGG~~~~~~-----------~~ggc~~~~~gpw~~~~  301 (320)
T 3q8g_A          266 QIPIENLPVKYGGTSVLHN-----------PNDKFYYSDIGPWRDPR  301 (320)
T ss_dssp             HSCGGGSBGGGTSCBCCSS-----------TTSCGGGBCBSGGGCTT
T ss_pred             hCChhhCChhhCCCCCCCC-----------CCCCeecCCCCCCCChh
Confidence            99999 5 99999998863           1145556678887 354

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=100.00  E-value=1.5e-45  Score=347.20  Aligned_cols=226  Identities=18%  Similarity=0.192  Sum_probs=197.4

Q ss_pred             HcCCChhHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc-ccccccCCCCCHH
Q psy8727          27 ELREDESTREDALIQLRQWITKN-SRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG-DLAFSKLDPKNPT  104 (300)
Q Consensus        27 el~e~~e~~~~~l~~Lr~~l~~~-p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~-d~~~~~~~~~~~~  104 (300)
                      .+++.++.++++|++||+|++++ |+++  ..||.+|+|||||++||+++|.++|+++++||+.++ ++++.. . ..+.
T Consensus         4 ~~~~l~~~q~~~l~~lr~~l~~~~~~l~--~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~-~~~~   79 (403)
T 1olm_A            4 RVGDLSPRQKEALAKFRENVQDVLPALP--NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-Q-PPEV   79 (403)
T ss_dssp             BTTBCCHHHHHHHHHHHHHHGGGGGGSS--CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-C-CCHH
T ss_pred             CccCCCHHHHHHHHHHHHHHHhhccCCC--CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-C-CHHH
Confidence            36788899999999999999988 4776  489999999999999999999999999999999997 677762 2 2244


Q ss_pred             HHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCC----CCCHHHHHHHHHHHHHHhhcccC-------ceeccEEEEEeC
Q psy8727         105 MQELLKLGYLFATPKRDKLGRRVIIARPGVFNPH----KYTNSHMLQIHGMTYETLMEDEE-------NQVRGFVHFNDG  173 (300)
Q Consensus       105 ~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~----~~~~~~~~r~~~~~le~~~~~~~-------~~~~g~v~IiD~  173 (300)
                      ++..+..|    ++|+|++||||+++++|++|++    ..+.++++|++++++|.++....       .++.|+++|+|+
T Consensus        80 ~~~~~~~~----~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~  155 (403)
T 1olm_A           80 IQQYLSGG----MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDC  155 (403)
T ss_dssp             HHHHCCBE----EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEEC
T ss_pred             HHHhCCce----eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEEC
Confidence            56665544    3599999999999999999987    47999999999999999874322       247899999999


Q ss_pred             CCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEec-cc-ccc--ccchh
Q psy8727         174 AGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV-IV-NAR--FLLRF  249 (300)
Q Consensus       174 ~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~-~~-~~L--~i~~~  249 (300)
                      +|+|++|+++..++.+|.+++++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ ++ ++|  +||++
T Consensus       156 ~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~  235 (403)
T 1olm_A          156 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPD  235 (403)
T ss_dssp             TTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGG
T ss_pred             CCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChh
Confidence            999999988777889999999999999999999999999999999999999999999999999995 44 467  99999


Q ss_pred             -h-hcCCCCCchh
Q psy8727         250 -L-RSKKFSVPMA  260 (300)
Q Consensus       250 -~-~eyGG~~~~~  260 (300)
                       + ++|||+++..
T Consensus       236 ~LP~~yGG~~~~~  248 (403)
T 1olm_A          236 QVPVEYGGTMTDP  248 (403)
T ss_dssp             GSBGGGTSSBCCT
T ss_pred             hCchhhCCCcCCC
Confidence             5 9999999764

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=99.13  E-value=1.1e-10  Score=102.64  Aligned_cols=131  Identities=11%  Similarity=0.035  Sum_probs=105.1

Q ss_pred             HcCceeeCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcccccCCCHHHH
Q psy8727         110 KLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLFTPKEA  189 (300)
Q Consensus       110 ~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~~~~~~  189 (300)
                      +.+.++. .|.|++|+||+++.+.+++....+.+.++.+++..++.+.      -..+.+|+|++|++..+.  .+.+.+
T Consensus         9 ~~~ify~-~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n~--p~~~wl   79 (256)
T 3pg7_A            9 TLSIFYQ-AGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNR--FKTDFL   79 (256)
T ss_dssp             HHTSEEE-EEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGC--CCHHHH
T ss_pred             HcCCEEE-cCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCcccC--CcHHHH
Confidence            3455544 4899999999999999998877787777766665555332      256899999999998764  577899


Q ss_pred             HHHHHHhhcccCceeceEEEEeCChHHHHHHHH-HhhhcCHhhhcceEEecccccc--ccchh
Q psy8727         190 VRIVKNGERTLPMRHKEIHIINCHPSVKYALDF-GLNLVSEKIRKRIKVSVIVNAR--FLLRF  249 (300)
Q Consensus       190 k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~l-ikpfl~~~t~~Ki~~~~~~~~L--~i~~~  249 (300)
                      +.+.+++-..|...+++++|+|++++|...|+. .++|.+.+..+|++++++.++|  +||.+
T Consensus        80 ~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~i~~~  142 (256)
T 3pg7_A           80 SKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHE  142 (256)
T ss_dssp             HHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGTSCGG
T ss_pred             HHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhhcCHH
Confidence            999999999999999999999999999977665 5667666888999999777776  66654

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=84.69  E-value=1.7  Score=28.46  Aligned_cols=40  Identities=15%  Similarity=0.233  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727          35 REDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER   82 (300)
Q Consensus        35 ~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~   82 (300)
                      .+++++.|++.      .|  .+|...+..-|+++++|++.|...|.+
T Consensus         9 ~ee~l~~L~em------FP--~ld~~~I~~vL~a~~gdvd~aI~~LL~   48 (59)
T 1wgl_A            9 SEEDLKAIQDM------FP--NMDQEVIRSVLEAQRGNKDAAINSLLQ   48 (59)
T ss_dssp             CHHHHHHHHHH------CS--SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHH------CC--CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            46677777764      23  368899999999999999999998874

>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1

Probab=82.80  E-value=3.1  Score=29.12  Aligned_cols=51  Identities=18%  Similarity=0.178  Sum_probs=39.4

Q ss_pred             HHcCCChh-HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy8727          26 AELREDES-TREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERY   83 (300)
Q Consensus        26 ~el~e~~e-~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~   83 (300)
                      -+|++..+ ....+|+++|.-+...       ..+..|.+-...++||+++|...+.+-
T Consensus        24 ~~Ls~~d~arL~SCLd~iR~VlGds-------V~e~~Lv~ailk~dfD~ekALd~vL~~   75 (83)
T 1ufz_A           24 HQLSEIDQARLYSCLDHMREVLGDA-------VPDDILTEAILKHKFDVQKALSVVLEQ   75 (83)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHTTTT-------SCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHccc-------CCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence            34555444 3488999999988652       567889999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	7e-31
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	2e-15
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	1e-12
d1r5la1	66	a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei	5e-11
d1r5la1	66	a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei	6e-07
d1auaa1	93	a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl	1e-10
d1auaa1	93	a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl	3e-05
d1olma1	75	a.5.3.1 (A:1-75) Supernatant protein factor (SPF),	2e-09
d1olma1	75	a.5.3.1 (A:1-75) Supernatant protein factor (SPF),	1e-05

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 7e-31
 Identities = 36/134 (26%), Positives = 62/134 (46%)

Query: 104 TMQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQ 163
           ++  LLK GY      RD  G +V+I R   ++P  +T   + ++  +T E ++++ E Q
Sbjct: 1   SIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQ 60

Query: 164 VRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFG 223
             G     D  G  F H    TP  A +I      + P++ + IH+IN            
Sbjct: 61  RNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI 120

Query: 224 LNLVSEKIRKRIKV 237
              ++EKI++RI +
Sbjct: 121 KPFLTEKIKERIHM 134

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 2e-15
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 11/142 (7%)

Query: 107 ELLKLGYLFATPKRDKLGRRVIIARPGVFNP----HKYTNSHMLQIHGMTYETLMEDEEN 162
           E+++          D  G  V     G  +        +   +L+      E L+++  +
Sbjct: 3   EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAH 62

Query: 163 Q-------VRGFVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPS 215
           Q       V       D  G+   HL     +     +   E   P   K + ++     
Sbjct: 63  QTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKL 122

Query: 216 VKYALDFGLNLVSEKIRKRIKV 237
              A +     +SE  RK+I V
Sbjct: 123 FPVAYNLIKPFLSEDTRKKIMV 144

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.6 bits (154), Expect = 1e-12
 Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 13/144 (9%)

Query: 119 KRDKLGRRVIIARPGVFNPHKY----TNSHMLQIHGMTYETLM--------EDEENQVRG 166
           K DK GR V     G  N H+     +   ML+     YE+++            + V  
Sbjct: 17  KTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVET 76

Query: 167 FVHFNDGAGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNL 226
                D  G+S                   +   P R  + +IIN       A       
Sbjct: 77  SCTIMDLKGISISSAYSVM-SYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 135

Query: 227 VSEKIRKRIKVSVIVNARFLLRFL 250
           +      +I +      + LL+ +
Sbjct: 136 LDPVTVSKIFILGSSYQKELLKQI 159

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (133), Expect = 5e-11
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 36  EDALIQLRQWITKNSRIQT-CRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLA 94
           +  L  LR+   +         L   FLLRFLR++ F + +A   L+ Y   R    ++ 
Sbjct: 1   QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI- 59

Query: 95  FSKLDPK 101
            + L P+
Sbjct: 60  SADLHPR 66

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 6e-07
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 245 FLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDPK 285
           FLLRFLR++ F + +A   L+ Y   R    ++  + L P+
Sbjct: 27  FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI-SADLHPR 66

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 35 REDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG 91
          +E AL +LR+ +     I+  RLD   LLRFLR++KF V +A+E  E     R  YG
Sbjct: 30 QEKALAELRKLLEDAGFIE--RLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 245 FLLRFLRSKKFSVPMAEEALERYILLRNTYG 275
            LLRFLR++KF V +A+E  E     R  YG
Sbjct: 54  TLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 35 REDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG 91
          +++AL + R+ +           D  FLLR+LR++ F +  +E  L +++  R    
Sbjct: 12 QKEALAKFRENVQDVLP-ALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 224 LNLVSEKIRKRIKVSVIVNARFLLRFLRSKKFSVPMAEEALERYILLRNTYG 275
           L    E ++  +      +  FLLR+LR++ F +  +E  L +++  R    
Sbjct: 16  LAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	100.0
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.97
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.96
d1r5la1	66	Alpha-tocopherol transfer protein {Human (Homo sap	99.67
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	99.58
d1auaa1	93	N-terminal domain of phosphatidylinositol transfer	99.5
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	87.91
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	84.81
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	84.39
d1ufza_	83	HBS1-like protein {Mouse (Mus musculus) [TaxId: 10	81.39

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-39  Score=267.82  Aligned_cols=172  Identities=23%  Similarity=0.270  Sum_probs=158.8

Q ss_pred             HHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHHhhcccCceeccEEEEEeCCCCCcccccCC
Q psy8727         105 MQELLKLGYLFATPKRDKLGRRVIIARPGVFNPHKYTNSHMLQIHGMTYETLMEDEENQVRGFVHFNDGAGVSFPHLTLF  184 (300)
Q Consensus       105 ~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~le~~~~~~~~~~~g~v~IiD~~g~s~~~~~~~  184 (300)
                      +.+.++.|++..+||+|++||||+++++|++|++.++..+++|+.++++|.++.++..+++|+++|+|++|+|++|+++.
T Consensus         2 i~~~l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~   81 (185)
T d1r5la2           2 IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQI   81 (185)
T ss_dssp             THHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC
T ss_pred             hHHHHHcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHHHHHHHHHhccccCCceEEEEEECCCCCHHHhhhc
Confidence            46789999999999999999999999999999999999999999999999988777788999999999999999999999


Q ss_pred             CHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEe-cccccc--ccchh-h-hcCCCCCch
Q psy8727         185 TPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVS-VIVNAR--FLLRF-L-RSKKFSVPM  259 (300)
Q Consensus       185 ~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~-~~~~~L--~i~~~-~-~eyGG~~~~  259 (300)
                      +++.++++++++|++||+|++++||||+|++|+++|+++||||+++|++||+|| ++.+++  +++++ + ++|||++++
T Consensus        82 ~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~~~~~~~~~~~~~~~~LP~~~GG~~~~  161 (185)
T d1r5la2          82 TPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFS  161 (185)
T ss_dssp             CHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHSTTTSCGGGTCSSCC
T ss_pred             cHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEeccchHHHHhhcCHHhCCHhcCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999 556665  77778 4 999999999


Q ss_pred             hHHHHHHHHHHHHhchh
Q psy8727         260 AEEALERYILLRNTYGD  276 (300)
Q Consensus       260 ~~~~~~~~~~~~~~~~~  276 (300)
                      .++..+.|.+....+.+
T Consensus       162 ~~~~~~~~~~~~~~~~d  178 (185)
T d1r5la2         162 MEDICQEWTNFIMKSED  178 (185)
T ss_dssp             HHHHHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            88888888776666654

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-32  Score=232.54  Aligned_cols=153  Identities=16%  Similarity=0.115  Sum_probs=133.0

Q ss_pred             HHHHHHcCceeeCCCCCCCCCEEEEEecCCCCCC----CCCHHHHHHHHHHHHHHhhcc-------cCceeccEEEEEeC
Q psy8727         105 MQELLKLGYLFATPKRDKLGRRVIIARPGVFNPH----KYTNSHMLQIHGMTYETLMED-------EENQVRGFVHFNDG  173 (300)
Q Consensus       105 ~~~~l~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~----~~~~~~~~r~~~~~le~~~~~-------~~~~~~g~v~IiD~  173 (300)
                      +++.+..|    ++|+|++||||+++++|++|++    ..+.++++|+.++.+|.++..       .+.+++|+++|+|+
T Consensus         5 i~~~~p~~----~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl   80 (199)
T d1olma3           5 IQQYLSGG----MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDC   80 (199)
T ss_dssp             HHHHCCBE----EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEEC
T ss_pred             HHHHCCCc----cccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEEC
Confidence            44454444    3499999999999999999975    358899999999999987521       23467899999999


Q ss_pred             CCCCcccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEec-c-cccc--ccchh
Q psy8727         174 AGVSFPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV-I-VNAR--FLLRF  249 (300)
Q Consensus       174 ~g~s~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~-~-~~~L--~i~~~  249 (300)
                      +|+|++|+++..+++++++++++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ + .++|  +|+++
T Consensus        81 ~g~s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~~~~~L~~~i~~~  160 (199)
T d1olma3          81 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPD  160 (199)
T ss_dssp             TTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGG
T ss_pred             CCCchhhhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCCCHHHHHHhCCHh
Confidence            999999998888899999999999999999999999999999999999999999999999999994 3 4667  99999


Q ss_pred             -h-hcCCCCCchhH
Q psy8727         250 -L-RSKKFSVPMAE  261 (300)
Q Consensus       250 -~-~eyGG~~~~~~  261 (300)
                       + ++|||++++.+
T Consensus       161 ~lP~~yGGt~~~~~  174 (199)
T d1olma3         161 QVPVEYGGTMTDPD  174 (199)
T ss_dssp             GSBGGGTSSBCCTT
T ss_pred             hCCHHhCCCCCCCC
Confidence             5 99999997654

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.3e-30  Score=217.86  Aligned_cols=150  Identities=17%  Similarity=0.070  Sum_probs=129.4

Q ss_pred             HcCceeeCCCCCCCCCEEEEEecCCCCCCC----CCHHHHHHHHHHHHHHhhc--------ccCceeccEEEEEeCCCCC
Q psy8727         110 KLGYLFATPKRDKLGRRVIIARPGVFNPHK----YTNSHMLQIHGMTYETLME--------DEENQVRGFVHFNDGAGVS  177 (300)
Q Consensus       110 ~~g~~~~l~g~Dk~GrpV~~~~~~~~~~~~----~~~~~~~r~~~~~le~~~~--------~~~~~~~g~v~IiD~~g~s  177 (300)
                      ...+...++|+|++||||+++++|++|+++    .+.+++++++++.+|.++.        ..+..++++++|+|++|+|
T Consensus         8 ~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~s   87 (203)
T d1auaa2           8 AKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGIS   87 (203)
T ss_dssp             GGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCC
T ss_pred             HHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCCCC
Confidence            344455566999999999999999998753    4899999999999998752        1234578999999999999


Q ss_pred             cccccCCCHHHHHHHHHHhhcccCceeceEEEEeCChHHHHHHHHHhhhcCHhhhcceEEec-c-cccc--ccchh-h-h
Q psy8727         178 FPHLTLFTPKEAVRIVKNGERTLPMRHKEIHIINCHPSVKYALDFGLNLVSEKIRKRIKVSV-I-VNAR--FLLRF-L-R  251 (300)
Q Consensus       178 ~~~~~~~~~~~~k~~~~~lq~~yP~rl~~i~ivN~P~~f~~~w~likpfl~~~t~~Ki~~~~-~-~~~L--~i~~~-~-~  251 (300)
                      ++++++. ..+++.+++++|++||+++++++|||+|++|+++|+++|+||+++|++||++++ + .+.|  +|+++ + .
T Consensus        88 ~~~~~~~-~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~~LP~  166 (203)
T d1auaa2          88 ISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPV  166 (203)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBG
T ss_pred             hHHhhhH-HHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhceeecCCCCHHHHHhhCCHhhChH
Confidence            9998642 578899999999999999999999999999999999999999999999999994 3 4667  99999 5 9


Q ss_pred             cCCCCCchh
Q psy8727         252 SKKFSVPMA  260 (300)
Q Consensus       252 eyGG~~~~~  260 (300)
                      +|||++.+.
T Consensus       167 ~~GG~~~~~  175 (203)
T d1auaa2         167 KFGGKSEVD  175 (203)
T ss_dssp             GGTSCBCCC
T ss_pred             HhCCCCcCC
Confidence            999999764

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.6e-17  Score=112.54  Aligned_cols=62  Identities=29%  Similarity=0.417  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhC--CCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhccccccccCCC
Q psy8727          37 DALIQLRQWITKN--SRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYGDLAFSKLDP  100 (300)
Q Consensus        37 ~~l~~Lr~~l~~~--p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~d~~~~~~~~  100 (300)
                      ++|++||+|++++  |++|. ..||.+|+|||||++||+++|.++|++|++||+.+| ++|.+.+|
T Consensus         2 ~aL~elR~~l~~~~~p~lp~-~~dD~~LlrFLRarkf~~~ka~~~l~~y~~~R~~~p-eif~~l~P   65 (66)
T d1r5la1           2 PGLAALRRRAREAGVPLAPL-PLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECP-EISADLHP   65 (66)
T ss_dssp             TTHHHHHHHHHHHTCCCSSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCH-HHHSCCCG
T ss_pred             HHHHHHHHHHHHcCCCcCCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHCH-HHccCCCC
Confidence            5799999999776  78886 589999999999999999999999999999999999 99998765

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.7e-15  Score=106.57  Aligned_cols=68  Identities=22%  Similarity=0.366  Sum_probs=60.3

Q ss_pred             HcCCChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc-cccc
Q psy8727          27 ELREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG-DLAF   95 (300)
Q Consensus        27 el~e~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~-d~~~   95 (300)
                      .+|+.++.++++|++||+++.+.+.... ..||.+|+|||||++||+++|.+++.+|++||+.++ |.|+
T Consensus         4 ~~gelt~~q~~~l~elr~~l~~~~~~~~-~~dd~~LlRFLrAr~fdv~kA~~ml~~~l~WR~~~~vD~Il   72 (75)
T d1olma1           4 RVGDLSPRQKEALAKFRENVQDVLPALP-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII   72 (75)
T ss_dssp             BTTBCCHHHHHHHHHHHHHHGGGGGGSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGG
T ss_pred             CcccCCHHHHHHHHHHHHHHHhhcccCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHcCchhhh
Confidence            4789999999999999999988654433 579999999999999999999999999999999998 6664

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.8e-14  Score=105.02  Aligned_cols=67  Identities=39%  Similarity=0.588  Sum_probs=59.1

Q ss_pred             cCCChhHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhcc-ccccc
Q psy8727          28 LREDESTREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALERYILLRNTYG-DLAFS   96 (300)
Q Consensus        28 l~e~~e~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~~~~~R~~~~-d~~~~   96 (300)
                      +|+.++.++++|++||+++.+.+...  ..||.+|+|||||++||+++|.++|.++++||+.++ |.|+.
T Consensus        23 ~g~Lt~~q~~~L~elr~~l~~~~~~~--~~DD~~llRfLrAr~fd~~~a~~ml~~~l~wR~~~~~d~i~~   90 (93)
T d1auaa1          23 PGNLDSAQEKALAELRKLLEDAGFIE--RLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQ   90 (93)
T ss_dssp             TTTCCTTHHHHHHHHHHHHHHTTCCS--SCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHH
T ss_pred             CCcCCHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCcchhhh
Confidence            47778888999999999999987544  589999999999999999999999999999999998 55543

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.91  E-value=0.87  Score=26.53  Aligned_cols=37  Identities=30%  Similarity=0.157  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHH
Q psy8727          36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALE   81 (300)
Q Consensus        36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~   81 (300)
                      +..|++|++       +-  ..|+..-++-|+++++||+.|.+.|-
T Consensus         6 ~~QL~qL~~-------MG--F~d~~~Ni~AL~~t~GdV~~Aie~Ll   42 (44)
T d2bwba1           6 EHQLRQLND-------MG--FFDFDRNVAALRRSGGSVQGALDSLL   42 (44)
T ss_dssp             HHHHHHHHH-------TT--CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHH-------cC--CCcHHHHHHHHHHcCCCHHHHHHHHh
Confidence            556666664       32  47889999999999999999999874

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.81  E-value=1.7  Score=25.99  Aligned_cols=38  Identities=13%  Similarity=-0.023  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727          36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER   82 (300)
Q Consensus        36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~   82 (300)
                      +..|++|++.       -  ..|+..-++-|.++++||+.|.+.|..
T Consensus         9 ~~QL~qL~~M-------G--F~d~~~Ni~AL~~t~GdV~~Aie~Ll~   46 (50)
T d2dnaa1           9 SKEMECLQAM-------G--FVNYNANLQALIATDGDTNAAIYKLKS   46 (50)
T ss_dssp             HHHHHHHHHH-------T--CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHc-------C--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            6667777752       1  468889999999999999999998875

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.39  E-value=0.89  Score=28.25  Aligned_cols=39  Identities=15%  Similarity=0.241  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727          36 EDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER   82 (300)
Q Consensus        36 ~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~   82 (300)
                      ++.++.|++..      |  .+|+..+..-|+++++|++.|...|..
T Consensus        10 Ee~i~~LkeMF------P--~~D~~vI~~VL~a~~G~vd~aid~LL~   48 (59)
T d1wgla_          10 EEDLKAIQDMF------P--NMDQEVIRSVLEAQRGNKDAAINSLLQ   48 (59)
T ss_dssp             HHHHHHHHHHC------S--SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHC------C--CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            45677777643      3  478999999999999999999998864

>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: HBS1-like domain
family: HBS1-like domain
domain: HBS1-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.39  E-value=1.8  Score=28.56  Aligned_cols=51  Identities=18%  Similarity=0.194  Sum_probs=39.2

Q ss_pred             HHHcCCChh-HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q psy8727          25 KAELREDES-TREDALIQLRQWITKNSRIQTCRLDARFLLRFLRSKKFSVPMAEEALER   82 (300)
Q Consensus        25 ~~el~e~~e-~~~~~l~~Lr~~l~~~p~l~~~~~dd~~llRFLra~~~dv~~A~~~l~~   82 (300)
                      ..+|.+... ....+|+++|..+...       ..+..|..-...++||+++|...+-+
T Consensus        23 ~~~Ls~~d~aRL~SCldqmR~VvGDs-------vpe~~lv~avlk~dydvekALd~vL~   74 (83)
T d1ufza_          23 NHQLSEIDQARLYSCLDHMREVLGDA-------VPDDILTEAILKHKFDVQKALSVVLE   74 (83)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHTTTT-------SCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHccc-------CCHHHHHHHHHHccCCHHHHHHHHHh
Confidence            445665555 3488999999988752       45688899999999999999988765