Psyllid ID: psy8763

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-
Protein Sequence
MGLLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWCSYC
Secondary Structure (PSIPRED)
ccHHHHHccccHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccHHHHccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccEccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccHHHccccccccccHHHHHHHcccHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgllsvqsdnknksrlipsssgvntrilNNKKQAVLHLATELNKVPILLILLQYKDMIDIlqggehgrTALHIAAIYDFDECARILVseqpecdwimVKDFGASLkracsngyypihdaaknasSKTMEVFLQFGESIGCSREEMISLFDaegnlplhsavhggdFKAVELCLKSGakistqqfdlstpvhlaCSQGALDIVRLMFnlqpseklvclnstdaqkmtplhcaamfdRCDVVQYLIDegadlnvldkekrsplllaasrggwktngvntriLNNKKQAVLHLATELNKVPILLILLQYKDMIDIlqggehgrTALHIAAIYDFDECARILVKDFGASLKracsngyypihdaaknasSKTMEVFLQFGESIGCSREEMISLFAAegnlplhsavhggdFKAVELCLKSGakistqqfdlstpvhlaCSQGALDIVRLMFnlqpseklvclnstdaqkmtplhcaamfdRCDVVQYLIDegadlnvldkekrsplllaasrgGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINlgacinlknnsnesplhLAARYGRYNTVKKLLSSergsfiinesdgegltplhiaskegfhYSVSIFQVTYVWCSYC
Flexible Loop (DISEMBL)
mgllsvqsdnknksrlipsssgvntrILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEgadlnvldkekRSPLLlaasrggwktngvnTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEgadlnvldkEKRSPLllaasrggwktvLTLVRNKANillkdinrrnILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWCSYC
Low Complexity Region (SEG)
MGLLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWCSYC
Disordered region (IsUnstruct)
*************************RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWCSY*
Disordered Region (DISOPRED)
MGLLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWCSYC
Disordered Region (DISEMBL)
MGLLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWCSYC
Disordered Region (DISPRO)
MGLLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWC**C
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWCSYC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	641	2.2.26 [Sep-21-2011]
Q7Z020	1296	Transient receptor potent	yes	N/A	0.719	0.355	0.539	1e-148
Q8BLA8	1125	Transient receptor potent	yes	N/A	0.698	0.398	0.323	7e-59
Q6RI86	1125	Transient receptor potent	yes	N/A	0.698	0.398	0.315	2e-56
O75762	1119	Transient receptor potent	yes	N/A	0.624	0.357	0.325	2e-54
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.892	0.291	0.260	6e-41
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	N/A	0.881	0.300	0.255	2e-39
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	N/A	0.858	0.295	0.264	9e-38
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.890	0.130	0.258	9e-38
Q502K3	1071	Serine/threonine-protein	no	N/A	0.736	0.440	0.267	7e-33
Q5ZLC8	1073	Serine/threonine-protein	no	N/A	0.783	0.467	0.278	1e-32

>sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channel subfamily A member 1 OS=Drosophila melanogaster GN=TrpA1 PE=2 SV=3

 Score =  526 bits (1356), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 283/525 (53%), Positives = 353/525 (67%), Gaps = 64/525 (12%)

Query: 139 GCSRE-EMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPV--HL-AC 194
           GC+RE EM ++  A  NLP                 K  A+I         P+  +L A 
Sbjct: 123 GCAREPEMTAM--APLNLP-----------------KKWARILRMSSTPKIPIVDYLEAA 163

Query: 195 SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
             G LD  + +F    S     +   DA+  T  H AA  +R ++++Y+ D+  D N  D
Sbjct: 164 ESGNLDDFKRLFMADNSR----IALKDAKGRTAAHQAAARNRVNILRYIRDQNGDFNAKD 219

Query: 255 KEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKD 308
               +PL +A     +       +  V+T +LN KKQA +HLATELNKV  L ++ QY++
Sbjct: 220 NAGNTPLHIAVESDAYDALDYLLSIPVDTGVLNEKKQAPVHLATELNKVKSLRVMGQYRN 279

Query: 309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
           +IDI QGGEHGRTALH+AAIYD +ECARIL+ +F A  ++ C+NGYYPIH+AAKNASSKT
Sbjct: 280 VIDIQQGGEHGRTALHLAAIYDHEECARILITEFDACPRKPCNNGYYPIHEAAKNASSKT 339

Query: 369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
           MEVF Q+GE  GC+REEMIS + +EGN+PLHSAVHGGD KAVELCLKSGAKISTQQ DLS
Sbjct: 340 MEVFFQWGEQRGCTREEMISFYDSEGNVPLHSAVHGGDIKAVELCLKSGAKISTQQHDLS 399

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
           TPVHLAC+QGA+DIV+LMF +QP EK +CL+ TD QKMTPLHCA+MFD  D+V YL+ EG
Sbjct: 400 TPVHLACAQGAIDIVKLMFEMQPMEKRLCLSCTDVQKMTPLHCASMFDHPDIVSYLVAEG 459

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
           AD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++N GG + +
Sbjct: 460 ADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMN-GGRLTD 518

Query: 549 FAEEVA--------AVFLG----------------------ENLINLGACINLKNNSNES 578
           FAE+VA         + L                       ENLI LGACINLKNN+NES
Sbjct: 519 FAEQVANCQTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLKNNNNES 578

Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           PLH AARYGRYNTV++LL SE+GSFIINESDG G+TPLHI+S++G
Sbjct: 579 PLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQG 623

Essential for thermotaxis by sensing environmental temperature. Receptor-activated non-selective cation channel involved in detection of sensations such as temperature. Involved in heat nociception by being activated by warm temperature of about 24-29 degrees Celsius.
Drosophila melanogaster (taxid: 7227)

>sp|Q8BLA8|TRPA1_MOUSE Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus GN=Trpa1 PE=1 SV=1

 Score =  229 bits (583), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 168/520 (32%), Positives = 251/520 (48%), Gaps = 72/520 (13%)

Query: 130 VFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP 189
           V+   GE + CS+E      D EG           D   +E  +K+  K+S  + +   P
Sbjct: 21  VYRGVGEDMDCSKESFK--VDIEG-----------DMCRLEDFIKNRRKLSKYEDENLCP 67

Query: 190 VHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 249
           +H A ++G ++++ L+ N    E    LN  D    TPLHCAA  ++ + V++L+ +GA+
Sbjct: 68  LHHAAAEGQVELMELIINGSSCE---VLNIMDGYGNTPLHCAAEKNQVESVKFLLSQGAN 124

Query: 250 LNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDM 309
            N+ ++   SPL +A        +G+   ++   K    H AT +N              
Sbjct: 125 PNLRNRNMMSPLHIAV-------HGMYNEVI---KVLTEHKATNIN-------------- 160

Query: 310 IDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTM 369
                 GE+G TAL      D  E  +IL++  GA L ++   G YP+H AA + + K M
Sbjct: 161 ----LEGENGNTALMSTCAKDNSEALQILLEK-GAKLCKSNKWGDYPVHQAAFSGAKKCM 215

Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
           E+ L +GE  G SRE  I+    +   PLH AV  GD   +++CL +GA I   +     
Sbjct: 216 ELILAYGEKNGYSRETHINFVNHKKASPLHLAVQSGDLDMIKMCLDNGAHIDMMENAKCM 275

Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
            +H A +QGA DIV+LM +       + +N+ D  + T LH A++FD  D+ +YLI  GA
Sbjct: 276 ALHFAATQGATDIVKLMISSYTGSSDI-VNAVDGNQETLLHRASLFDHHDLAEYLISVGA 334

Query: 490 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG----- 544
           D+N  D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G     
Sbjct: 335 DINSTDSEGRSPLILATASASWNIVNLLLCKGAKVDIKDHLGRNFLHLTVQQPYGLRNLR 394

Query: 545 -------HIKE--------------FAEEVAAVFLGENLINLGACINLKNNSNESPLHLA 583
                  HIKE              +A          NL+     I+ K+   +SPLH A
Sbjct: 395 PEFMQMQHIKELVMDEDNDGCTPLHYACRQGVPVSVNNLLGFNVSIHSKSKDKKSPLHFA 454

Query: 584 ARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           A YGR NT ++LL     + ++NE D  G+TPLH+A+K G
Sbjct: 455 ASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNG 494

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Mus musculus (taxid: 10090)

>sp|Q6RI86|TRPA1_RAT Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus GN=Trpa1 PE=2 SV=1

 Score =  221 bits (562), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 164/520 (31%), Positives = 249/520 (47%), Gaps = 72/520 (13%)

Query: 130 VFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP 189
           V+   G+ + CS+E      D EG           D   +E  +K+  K+S  + +    
Sbjct: 21  VYRGVGKDMDCSKESFK--VDIEG-----------DMCRLEAFIKNRRKLSKYEDENLCL 67

Query: 190 VHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 249
           +H A ++G +++++L+ N    E    LN  D    TPLH AA  ++ + V++L+ +GA+
Sbjct: 68  LHHAAAEGQVELMQLIINGSSCE---ALNVMDDYGNTPLHWAAEKNQVESVKFLLSQGAN 124

Query: 250 LNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDM 309
            N+ ++   +PL +A         G+   ++   K    H AT +N              
Sbjct: 125 PNLRNRNMMAPLHIAVQ-------GMYNEVI---KVLTEHKATNIN-------------- 160

Query: 310 IDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTM 369
                 GE+G TAL      D  E  +IL++  GA L ++   G YP+H AA + + + M
Sbjct: 161 ----LEGENGNTALMSTCAKDNSEALQILLEK-GAKLCKSNKWGDYPVHQAAFSGAKRCM 215

Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
           E+ L +GE  G SRE  I+    +   PLH AV  GD   +++CL SGA I   +     
Sbjct: 216 ELILAYGEKTGYSREAHINFVNHKKASPLHLAVQSGDLDMIKMCLDSGAHIDMMENAKCM 275

Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
            +H A +QGA DIV+LM +       + +N+ D  + T LH A++FD  D+  YLI  GA
Sbjct: 276 ALHFAATQGATDIVKLMISSYTGSSDI-VNAVDGNQETLLHRASLFDHHDLADYLISVGA 334

Query: 490 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG----- 544
           D+N  D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G     
Sbjct: 335 DINSTDSEGRSPLILATASASWNIVNLLLSKGAKVDIKDHLGRNFLHLTVQQPYGLRNLR 394

Query: 545 -------HIKE--------------FAEEVAAVFLGENLINLGACINLKNNSNESPLHLA 583
                  HIKE              +A    A     NL+     ++ K+   +SPLH A
Sbjct: 395 PEFLQMQHIKELVMDEDNDGCTPLHYACRQGAPVSVNNLLRFNVSVHSKSKDKKSPLHFA 454

Query: 584 ARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           A YGR NT ++LL     + ++NE D  G+TPLH+A+K G
Sbjct: 455 ASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNG 494

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Rattus norvegicus (taxid: 10116)

>sp|O75762|TRPA1_HUMAN Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=2 SV=3

 Score =  214 bits (545), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/461 (32%), Positives = 234/461 (50%), Gaps = 61/461 (13%)

Query: 190 VHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 249
           +H A ++G ++   LM  +     L  L+  D    TPLHCA   ++ + V++L+  GA+
Sbjct: 67  LHYAAAEGQIE---LMEKITRDSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRGAN 123

Query: 250 LNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDM 309
            N+ +    +PL +A         G+N  ++                     +LL+++  
Sbjct: 124 PNLRNFNMMAPLHIAVQ-------GMNNEVMK--------------------VLLEHRT- 155

Query: 310 IDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTM 369
           ID+   GE+G TA+ IA   +  E  +IL+K  GA   ++   G +PIH AA + S + M
Sbjct: 156 IDVNLEGENGNTAVIIACTTNNSEALQILLKK-GAKPCKSNKWGCFPIHQAAFSGSKECM 214

Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
           E+ L+FGE  G SR+  I+        PLH AV  GD + +++CL +GA+I   +    T
Sbjct: 215 EIILRFGEEHGYSRQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCT 274

Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
            +H A +QGA +IV+LM +   S  +  +N+TD    T LH A++FD  ++  YLI  GA
Sbjct: 275 AIHFAATQGATEIVKLMIS-SYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGA 333

Query: 490 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK-- 547
           D+N +D E RSPL+LA +   W  V  L+   A + +KD   RN LHL V    G +K  
Sbjct: 334 DINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYG-LKNL 392

Query: 548 --EF--AEEVAAVFLGE---------------------NLINLGACINLKNNSNESPLHL 582
             EF   +++  + + E                     NL+     I+ K+   +SPLH 
Sbjct: 393 RPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHF 452

Query: 583 AARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           AA YGR NT ++LL     + ++NE D  G+TPLH+A+K G
Sbjct: 453 AASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNG 493

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  169 bits (428), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 176/675 (26%), Positives = 299/675 (44%), Gaps = 103/675 (15%)

Query: 21  SGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD 80
           +GV+  I N      LHLA++   V ++  LLQ +  +D     + G TALHIA++    
Sbjct: 46  NGVDVNICNQNGLNALHLASKEGHVEVVSELLQREANVDA--ATKKGNTALHIASLAGQA 103

Query: 81  ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAK------------NASSKTM 128
           E  ++LV+             GA++     NG+ P++ AA+            N +S+++
Sbjct: 104 EVVKVLVTN------------GANVNAQSQNGFTPLYMAAQENHLEVVRFLLDNGASQSL 151

Query: 129 EV---FLQFGESIGCSREEMISLF---DAEGN--LP-LHSAVHGGDFKAVELCLKSGAKI 179
                F     ++    ++++SL    D +G   LP LH A    D KA  L L++    
Sbjct: 152 ATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDTNA 211

Query: 180 STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDV 239
             +     TP+H+A   G +++  L+ N     +   ++ T    +TPLH A+     ++
Sbjct: 212 DVESKSGFTPLHIAAHYGNINVATLLLN-----RAAAVDFTARNDITPLHVASKRGNANM 266

Query: 240 VQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGV----NTRILNNKKQAV--LHLATE 293
           V+ L+D GA ++   ++  +PL   A  G  +   +    +  IL+  K  +  LH+AT+
Sbjct: 267 VKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRSAPILSKTKNGLSPLHMATQ 326

Query: 294 LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNG 353
            + +  + +LLQ+   +D +       TALH+AA     + A++L+ D  AS      NG
Sbjct: 327 GDHLNCVQLLLQHNVPVDDVTNDY--LTALHVAAHCGHYKVAKVLL-DKKASPNAKALNG 383

Query: 354 YYPIHDAAKNASSKTMEVFLQFGESIGCSREE---------------MISLFAAEGNLP- 397
           + P+H A K    + ME+ L+ G SI    E                ++S     G  P 
Sbjct: 384 FTPLHIACKKNRIRVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPN 443

Query: 398 ---------LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 448
                    LH A   G  + V   ++ GA++  +  D  TP+H++   G  DIV+ +  
Sbjct: 444 TTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLL- 502

Query: 449 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 508
               ++    N+      TPLH AA     DV  +L+D GA L++  K+  +PL +AA  
Sbjct: 503 ----QQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKY 558

Query: 509 GGWKTVLTLVRNKANILLKDINRRNILH-----------LLVLNGGGHIKEFAE------ 551
           G  +    L++  A+      +    LH           LL+L+ G      A+      
Sbjct: 559 GKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPL 618

Query: 552 EVAA----VFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINE 607
            +AA    + +  +L+  GA  N       + +HLAA+ G  + V  LLS       +N 
Sbjct: 619 HIAAKKNQMDIATSLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNAN---VNL 675

Query: 608 SDGEGLTPLHIASKE 622
           S+  GLTPLH+A++E
Sbjct: 676 SNKSGLTPLHLAAQE 690

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  164 bits (415), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 175/684 (25%), Positives = 292/684 (42%), Gaps = 119/684 (17%)

Query: 21  SGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD 80
           +GV+    N      LHLA++   V +++ LL +K++I +    + G TALHIAA+   D
Sbjct: 34  NGVDINTCNQNGLNGLHLASKEGHVKMVVELL-HKEII-LETTTKKGNTALHIAALAGQD 91

Query: 81  ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC 140
           E  R LV            ++GA++      G+ P++ AA+    + ++  L+ G +   
Sbjct: 92  EVVRELV------------NYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNV 139

Query: 141 SREE-----MISLFDAEGN---------------LP-LHSAVHGGDFKAVELCLKSGAKI 179
           + E+      ++L     N               LP LH A    D +   + L++    
Sbjct: 140 ATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNP 199

Query: 180 STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDV 239
                   TP+H+A     L++ +L+ N     +   +N T    +TPLH A+      +
Sbjct: 200 DVLSKTGFTPLHIAAHYENLNVAQLLLN-----RGASVNFTPQNGITPLHIASRRGNVIM 254

Query: 240 VQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTN------GVNTRILNNKKQAVLHLATE 293
           V+ L+D GA +    K++ +PL  AA  G  + +      G   +       + +H+A +
Sbjct: 255 VRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQ 314

Query: 294 LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNG 353
            + +  + +LLQY   ID +       T LH+AA       A++L+ D GA       NG
Sbjct: 315 GDHLDCVRLLLQYDAEIDDITLDH--LTPLHVAAHCGHHRVAKVLL-DKGAKPNSRALNG 371

Query: 354 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELC 413
           + P+H A K    + ME+ L+ G SI    E         G  PLH A   G    V+  
Sbjct: 372 FTPLHIACKKNHVRVMELLLKTGASIDAVTES--------GLTPLHVASFMGHLPIVKNL 423

Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA 473
           L+ GA  +     + TP+H+A   G  ++ + +  LQ   K+   N+      TPLHCAA
Sbjct: 424 LQRGASPNVSNVKVETPLHMAARAGHTEVAKYL--LQNKAKV---NAKAKDDQTPLHCAA 478

Query: 474 MFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN---------- 523
                ++V+ L++  A+ N+      +PL +AA  G  +TVL L+  +A+          
Sbjct: 479 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT 538

Query: 524 ----------------ILLKDI-------------------NRRNILHLLVLNGG----- 543
                           +L +D                    N  +I+ LL+  GG     
Sbjct: 539 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 598

Query: 544 ---GHIK-EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSE 599
              G+     A +   V +  +L+  G   N ++    +PLHLAA+ G    V  LLS +
Sbjct: 599 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 658

Query: 600 RGSFIINESDGEGLTPLHIASKEG 623
               + N+S   GLTPLH+ ++EG
Sbjct: 659 ANGNLGNKS---GLTPLHLVAQEG 679

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  159 bits (401), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 165/623 (26%), Positives = 263/623 (42%), Gaps = 73/623 (11%)

Query: 36  LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
           LH+A   +      +LLQ     D+L   + G T LHIAA Y+    A++L++     ++
Sbjct: 173 LHIAARNDDTRTAAVLLQNDPNPDVL--SKTGFTPLHIAAHYENLNVAQLLLNRGASVNF 230

Query: 96  ------------------IMVK---DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 134
                             IMV+   D GA ++    +   P+H AA+N   +  E+ L  
Sbjct: 231 TPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDH 290

Query: 135 GESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 194
           G  I    +  +S        P+H A  G     V L L+  A+I     D  TP+H+A 
Sbjct: 291 GAPIQAKTKNGLS--------PIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAA 342

Query: 195 SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
             G   + +++ +     K    NS      TPLH A   +   V++ L+  GA ++ + 
Sbjct: 343 HCGHHRVAKVLLD-----KGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVT 397

Query: 255 KEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKD 308
           +   +PL +A+  G           G +  + N K +  LH+A       +   LLQ K 
Sbjct: 398 ESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 457

Query: 309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
             +     +  +T LH AA        ++L+++ GAS   A + G+ P+H AA+     T
Sbjct: 458 KANAKAKDD--QTPLHCAARIGHTGMVKLLLEN-GASPNLATTAGHTPLHTAAREGHVDT 514

Query: 369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
               L+   S  C           +G  PLH A   G  +  EL L+  A  +    +  
Sbjct: 515 ALALLEKEASQAC--------MTKKGFTPLHVAAKYGKVRLAELLLEHDAHPNAAGKNGL 566

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
           TP+H+A     LDIV+L+     S      N       TPLH AA  ++ +V + L+  G
Sbjct: 567 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG-----YTPLHIAAKQNQIEVARSLLQYG 621

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
              N    +  +PL LAA  G  + V  L+  +AN  L + +    LHL  ++  GH+  
Sbjct: 622 GSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHL--VSQEGHVP- 678

Query: 549 FAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINES 608
               VA V     LI  G  ++       +PLH+A+ YG    VK LL  +     +N  
Sbjct: 679 ----VADV-----LIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNAK 726

Query: 609 DGEGLTPLHIASKEGFHYSVSIF 631
              G +PLH A+++G    V++ 
Sbjct: 727 TKLGYSPLHQAAQQGHTDIVTLL 749

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  159 bits (401), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 174/674 (25%), Positives = 295/674 (43%), Gaps = 103/674 (15%)

Query: 22  GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 81
           GV+  I N      LHLA++   V ++  LLQ +  +D     + G TALHIA++    E
Sbjct: 64  GVDINICNQNGLNALHLASKEGHVEVVSELLQREANVDA--ATKKGNTALHIASLAGQAE 121

Query: 82  CARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAK------------NASSKTME 129
             ++LV+             GA++     NG+ P++ AA+            N +S+++ 
Sbjct: 122 VVKVLVTN------------GANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLA 169

Query: 130 V---FLQFGESIGCSREEMISLF---DAEGN--LP-LHSAVHGGDFKAVELCLKSGAKIS 180
               F     ++    ++++SL    D +G   LP LH A    D KA  L L++     
Sbjct: 170 TEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNAD 229

Query: 181 TQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVV 240
            +     TP+H+A   G +++  L+ N     +   ++ T    +TPLH A+     ++V
Sbjct: 230 VESKSGFTPLHIAAHYGNINVATLLLN-----RAAAVDFTARNDITPLHVASKRGNANMV 284

Query: 241 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGV----NTRILNNKKQAV--LHLATEL 294
           + L+D GA ++   ++  +PL   A  G  +   +       IL+  K  +  LH+AT+ 
Sbjct: 285 KLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQG 344

Query: 295 NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY 354
           + +  + +LLQ+   +D +       TALH+AA     + A++L+ D  A+      NG+
Sbjct: 345 DHLNCVQLLLQHNVPVDDVTNDY--LTALHVAAHCGHYKVAKVLL-DKKANPNAKALNGF 401

Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREE---------------MISLFAAEGNLP-- 397
            P+H A K    K ME+ L+ G SI    E                ++S     G  P  
Sbjct: 402 TPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNT 461

Query: 398 --------LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
                   LH A   G  + V   ++ GA++  +  D  TP+H++   G  DIV+ +   
Sbjct: 462 TNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLL-- 519

Query: 450 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
              ++    N+      TPLH +A     DV  +L+D GA L++  K+  +PL +AA  G
Sbjct: 520 ---QQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYG 576

Query: 510 GWKTVLTLVRNKANILLKDINRRNILH-----------LLVLNGGGHIKEFAE------E 552
             +    L++  A+      +    LH           LL+L+ G      A+       
Sbjct: 577 KLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLH 636

Query: 553 VAA----VFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINES 608
           +AA    + +   L+  GA  N       + +HLAA+ G  + V  LL        +N S
Sbjct: 637 IAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLGRNAN---VNLS 693

Query: 609 DGEGLTPLHIASKE 622
           +  GLTPLH+A++E
Sbjct: 694 NKSGLTPLHLAAQE 707

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score =  142 bits (358), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 164/613 (26%), Positives = 250/613 (40%), Gaps = 141/613 (23%)

Query: 115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK 174
           P+H AA N +++ +E  L    S+        ++ D  G  PLH A   G  + V+L L 
Sbjct: 110 PLHIAAANRATRCVETLLPHVSSL--------NMADRTGRAPLHHAAQSGYQEMVKLLLN 161

Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 234
            GA +S        P+H A   G L++V+L+ + Q S+K    +  D +  TPLH AA  
Sbjct: 162 KGANLSASDKKDRQPIHWAAYLGHLEVVKLLVS-QGSDK----SCKDKRGYTPLHAAAAS 216

Query: 235 DRCDVVQYL------IDE---------------------------GADLNVLDKEKRSPL 261
              DVV+YL      IDE                           GA++N  +    +PL
Sbjct: 217 GHVDVVKYLLRNGAEIDEPNAFGNTALHVACYTGQEAVANELVNRGANVNQPNHRGYTPL 276

Query: 262 LLAA-SRGG------WKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ 314
            LAA S  G         NG +  + + + ++ LH+A    +     IL+Q    ID + 
Sbjct: 277 HLAAVSTNGALCLELLVNNGADVNMQSKEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVD 336

Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
              +G T LH+AA Y  +     L+ + GA   R   +G +P+H A    SS      L 
Sbjct: 337 --RYGNTPLHVAAKYGHELLISTLMTN-GADTARQGIHGMFPLHLAVLYGSSDCCRKLLS 393

Query: 375 FGE----SIGCSREEMISLFAAEGNLP-------LHSAVHGGDFKAVELCLKSGAKISTQ 423
            G+     +  S+E ++S    + N P       LH+A  GG+ + + L L SGA ++ +
Sbjct: 394 SGQLYSIVLSMSKEHVLS-AGFDINTPDNFGRTCLHAAASGGNIECLNLLLSSGADMNKK 452

Query: 424 QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM---FDRCD- 479
                TP+H A + G    V ++           +N  D    TPLH +A    F R D 
Sbjct: 453 DKFGRTPLHYAAANGRYQCVVVLVGAGAE-----VNERDRSGCTPLHYSAASTAFCRTDR 507

Query: 480 ------------------VVQYLIDEGAD------------------------------- 490
                              V++L+D GAD                               
Sbjct: 508 PHASTHQNQEDGEKESFLCVEHLLDNGADPCLCNTKGYSAVHYAAAHGNKQNLELLLEMC 567

Query: 491 LNVL-DKEKR---SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 546
            N L DKE     SPL LA   G W+ V  L+ +   + + D   R++L+L    G    
Sbjct: 568 FNTLGDKESNGSISPLHLAVESGHWECVTVLIESGVCVDVCDPVGRSVLYLASQRGHSRC 627

Query: 547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIIN 606
            E     +A           +C+  ++ S   PLH+AA  G    ++ LL SE G+ ++N
Sbjct: 628 VELLLSQSA-----------SCLLAEHRSKWGPLHVAAANGHSECLRMLLCSEGGADLVN 676

Query: 607 ESDGEGLTPLHIA 619
            +D EG TPL +A
Sbjct: 677 VTDAEGQTPLMLA 689

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q5ZLC8|ANR52_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Gallus gallus GN=ANKRD52 PE=2 SV=1

 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 173/621 (27%), Positives = 255/621 (41%), Gaps = 119/621 (19%)

Query: 67  GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
           GRT LH AA     EC  +L+S             GA L+R    G  P+H AA N S +
Sbjct: 423 GRTCLHAAASGGNVECLNLLLSS------------GADLRRRDKFGRTPLHYAAANGSYQ 470

Query: 127 TMEVFLQFGESI------GCSREEMISLFDAEGNLPLHSA-VHGGD------------FK 167
                +  G SI      GC+     +  D       HS   H  D            F 
Sbjct: 471 CTVTLVTAGASINEADCKGCTPLHYAAASDTYRRAETHSGNSHDTDEEPLKESRMKEAFF 530

Query: 168 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ-KMT 226
            +E  L +GA  S +     T VH A + G    + L+  +       CL   ++   ++
Sbjct: 531 CLEFLLDNGADPSLRDKQGYTAVHYAAAYGNRQNLELLLEMS----FNCLEDVESTIPVS 586

Query: 227 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRIL 280
           PLH AA    C+ ++ L +   +L+V D + R+ L LA  RG  +      ++G +  + 
Sbjct: 587 PLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALYLATERGSTECVEVLTSHGASALVK 646

Query: 281 NNKKQ-AVLHLATELNKVPILLILLQYKDMIDI--------------------------- 312
             K++   LH A        L +L+   +  DI                           
Sbjct: 647 ERKRKWTPLHAAAANGNTDSLHLLIDSGERADITDVMDIHGQTPLMLAIMNGHVDCVHLL 706

Query: 313 LQGG-------EHGRTALHIAAIYDFDEC--------ARILVKDFGASLKRACSNGYYPI 357
           L+ G       + GRTALH  A+   ++C        A +L +DF          G  PI
Sbjct: 707 LEKGSTADAADKRGRTALHRGAVTGCEDCLAALLDHDAFVLCRDF---------KGRTPI 757

Query: 358 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG 417
           H A+     + +   LQ       S + + S+    G  P+H A + G    +EL L+  
Sbjct: 758 HFASACGHLEILRTLLQ----AALSTDPLDSVVDYSGYSPMHWASYSGHEDCLELLLEHN 813

Query: 418 --AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 475
             A +    F   TP+H A      D    M       K+V  NS DA+  TPLH AA  
Sbjct: 814 PFAYLEGNPF---TPLHCAVINNQ-DSTAEMLVEALGAKIV--NSRDAKGRTPLHAAAFA 867

Query: 476 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV-LTLVRNKANILLKDINRRNI 534
           D    +Q L+   A+++  DK  R+PL++A+  G    V   L + KANI + D+N+   
Sbjct: 868 DNIHGLQLLLRHQAEVDTTDKLGRTPLMMASENGHTAAVEFLLYQAKANITVLDVNKNTA 927

Query: 535 LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKK 594
           LHL    G        E+ A + LGE   +LG  IN  N++ + PLH+AAR G    V+ 
Sbjct: 928 LHLACSKG-------HEKCALLILGETQ-DLG-LINASNSALQMPLHIAARNGLATVVQA 978

Query: 595 LLSSERGSFIINESDGEGLTP 615
           LLS  RG+ ++   D EG TP
Sbjct: 979 LLS--RGATVL-AVDEEGHTP 996

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	641
270004805	1317	hypothetical protein TcasGA2_TC002449 [T	0.658	0.320	0.589	1e-152
242023855	1175	conserved hypothetical protein [Pediculu	0.605	0.330	0.625	1e-149
170032246	1345	conserved hypothetical protein [Culex qu	0.627	0.298	0.601	1e-147
442631143	1197	transient receptor potential A1, isoform	0.719	0.385	0.539	1e-147
358681383	1251	TRPA1(A) isoform [Drosophila melanogaste	0.664	0.340	0.573	1e-147
195428457	1237	GK17464 [Drosophila willistoni] gi|19415	0.627	0.324	0.602	1e-147
442631145	1196	transient receptor potential A1, isoform	0.719	0.385	0.539	1e-147
238054359	1296	RecName: Full=Transient receptor potenti	0.719	0.355	0.539	1e-147
442631139	1232	transient receptor potential A1, isoform	0.664	0.345	0.573	1e-146
442631147	1195	transient receptor potential A1, isoform	0.664	0.356	0.573	1e-146

>gi|270004805|gb|EFA01253.1| hypothetical protein TcasGA2_TC002449 [Tribolium castaneum]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/463 (58%), Positives = 339/463 (73%), Gaps = 41/463 (8%)

Query: 197 GALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKE 256
           G L+  + ++   P+     L+  D++  T  H AA  +R  ++Q+++ +G DLN  D  
Sbjct: 208 GNLETFQRLYFADPTR----LSIKDSRGRTAAHQAAAKNRITILQFILSQGGDLNNQDNA 263

Query: 257 KRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMI 310
             +PL +A               GV T ILN+KKQA +HL TELNKV +L ++ ++KD I
Sbjct: 264 GNTPLHVAVEHESLDAVDFLLQAGVKTNILNDKKQAAIHLVTELNKVSVLEVMGKHKDKI 323

Query: 311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTME 370
           DILQGGEHGRTALHIAAIYD +ECARIL+  F A  +R C+NGYYPIH+AAKNASSKT+E
Sbjct: 324 DILQGGEHGRTALHIAAIYDHEECARILISVFDACPRRPCNNGYYPIHEAAKNASSKTLE 383

Query: 371 VFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP 430
           +FLQ+GES GC+REEMIS + +EGN+PLHSAVHGGD KAVELCL+SGAKISTQQ DLSTP
Sbjct: 384 IFLQWGESRGCTREEMISFYDSEGNVPLHSAVHGGDIKAVELCLRSGAKISTQQHDLSTP 443

Query: 431 VHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 490
           VHLAC+QGA DIV+LMF +QP EKL CL S D QKMTPLHCAAMFD  ++V++LI+EGAD
Sbjct: 444 VHLACAQGATDIVKLMFKMQPEEKLPCLASCDVQKMTPLHCAAMFDHPEIVEFLINEGAD 503

Query: 491 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 550
           +N +DKEKRSPLLLAA RGGW+TV  L+R  A+I +KD+NRRN+LHL+V+N GG +++FA
Sbjct: 504 INPMDKEKRSPLLLAALRGGWRTVHVLIRLGADINVKDVNRRNVLHLVVMN-GGRLEQFA 562

Query: 551 EEVAA------------------------------VFLGENLINLGACINLKNNSNESPL 580
            EV+                               +   ENLI LGA INLKNN+NESPL
Sbjct: 563 SEVSKAKSQTSLLQLLNEKDINGCSPLHYASREGHIRSLENLIRLGATINLKNNNNESPL 622

Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           H AARYGRYNTV++LL SE+G+FIINESDGEGLTPLHIASK+G
Sbjct: 623 HFAARYGRYNTVRQLLDSEKGTFIINESDGEGLTPLHIASKQG 665

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023855|ref|XP_002432346.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517769|gb|EEB19608.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/425 (62%), Positives = 321/425 (75%), Gaps = 37/425 (8%)

Query: 235 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTN------GVNTRILNNKKQAVL 288
           ++ +++Q++   G DLN+ D    +PL +A     +         GVNT ILN K QA +
Sbjct: 95  NKVNILQFIHSHGGDLNIRDYAGNTPLHVAILNDSYNVMDFLLQCGVNTSILNEKNQAPI 154

Query: 289 HLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKR 348
           HL TELNKV  L +L +++  IDI QGGEHGRTALH+ AIYD++ECARIL+ +FGA  ++
Sbjct: 155 HLITELNKVKALEVLSKHRSKIDIQQGGEHGRTALHLTAIYDYEECARILITEFGACPRK 214

Query: 349 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFK 408
            C+NGYYPIH+AAKNASSKTMEVFLQ+GES GCSREEM+S + +EGN+PLHSAVHGGD +
Sbjct: 215 PCNNGYYPIHEAAKNASSKTMEVFLQWGESRGCSREEMMSFYDSEGNVPLHSAVHGGDIR 274

Query: 409 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP 468
           AVELCLKSGAKISTQQ DLSTPVHLAC+QGA++IVRLMF +QP EK +CL S D QKMTP
Sbjct: 275 AVELCLKSGAKISTQQHDLSTPVHLACAQGAIEIVRLMFKMQPHEKEICLTSCDVQKMTP 334

Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
           LHCAAMFD  ++V+YLI EGA++N LDKE RSPLLLAASR GW+TVLTL+R KANILLKD
Sbjct: 335 LHCAAMFDHPEIVEYLISEGAEINPLDKENRSPLLLAASRAGWRTVLTLIRLKANILLKD 394

Query: 529 INRRNILHLLVLNGGGHIKEFAEEVAAV--------FLG--------------------- 559
            + RNIL L+V+N GG +++FA+EV  V         L                      
Sbjct: 395 SSYRNILSLVVMN-GGRLEDFAQEVLKVQSKKDLLLLLNEKDISGCSPLHYASREGHIKS 453

Query: 560 -ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI 618
            E+LI LGACINLKNN+NESPLH AARYGRYNTVK+LL SE+G+FIINE DGEGLTPLHI
Sbjct: 454 LESLIKLGACINLKNNNNESPLHFAARYGRYNTVKQLLDSEKGTFIINECDGEGLTPLHI 513

Query: 619 ASKEG 623
           ASK G
Sbjct: 514 ASKNG 518

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032246|ref|XP_001843993.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872109|gb|EDS35492.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/439 (60%), Positives = 324/439 (73%), Gaps = 37/439 (8%)

Query: 221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NG 274
           D++  T  H AA  +R +++ Y+  +  DLN  D    +PL LA                
Sbjct: 232 DSRGRTATHQAAARNRVNILNYIYTQRGDLNEQDMFGNTPLHLAVENDSLDALEFLLKIP 291

Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
           V T ILN+KK A +HLATELNKV  L ++ +Y+D+ DI QGGEHGRTALH+AAIYD +EC
Sbjct: 292 VATNILNDKKLAPVHLATELNKVKGLQVMGKYRDVFDIQQGGEHGRTALHLAAIYDNEEC 351

Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
           ARIL+ +FGAS ++ C+NGYYPIH+AAKNASSKTMEVF Q+GES GC+REEMIS + +EG
Sbjct: 352 ARILISEFGASPRKPCNNGYYPIHEAAKNASSKTMEVFFQWGESKGCTREEMISFYDSEG 411

Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEK 454
           N+PLHSAVHGGD KAVELC+KSGAKISTQQ DLSTPVHLA +QGA+DIV+LMF +QP EK
Sbjct: 412 NVPLHSAVHGGDIKAVELCMKSGAKISTQQHDLSTPVHLAAAQGAIDIVKLMFLMQPLEK 471

Query: 455 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
            + LN TD QKMTPLHCAA FD  ++V+YL+ EGAD+N LDKE RSPLLL+ASR GW+TV
Sbjct: 472 RISLNCTDIQKMTPLHCAANFDHPEIVEYLVQEGADINALDKENRSPLLLSASRAGWRTV 531

Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA------------------- 555
           + L+R  ANI LKD+N RN+LHL+++N GG + EFA++V+                    
Sbjct: 532 MILIRLGANIELKDVNSRNVLHLVIMN-GGRLDEFAKQVSTTQSEKYLLQLMNEKDDTGC 590

Query: 556 -----------VFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI 604
                      +   ENLI LGACINLKNN+NESPLH AARYGR+NTV++LL SE+G+FI
Sbjct: 591 SPLHYASREGHIRSLENLIQLGACINLKNNNNESPLHFAARYGRFNTVRQLLDSEKGTFI 650

Query: 605 INESDGEGLTPLHIASKEG 623
           INESDGEGLTPLHIASKEG
Sbjct: 651 INESDGEGLTPLHIASKEG 669

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442631143|ref|NP_648263.5| transient receptor potential A1, isoform I [Drosophila melanogaster] gi|32351041|gb|AAP76197.1| ANKTM1 [Drosophila melanogaster] gi|440215511|gb|AAF50356.5| transient receptor potential A1, isoform I [Drosophila melanogaster]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/525 (53%), Positives = 353/525 (67%), Gaps = 64/525 (12%)

Query: 139 GCSRE-EMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPV--HL-AC 194
           GC+RE EM ++  A  NLP                 K  A+I         P+  +L A 
Sbjct: 24  GCAREPEMTAM--APLNLP-----------------KKWARILRMSSTPKIPIVDYLEAA 64

Query: 195 SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
             G LD  + +F    S     +   DA+  T  H AA  +R ++++Y+ D+  D N  D
Sbjct: 65  ESGNLDDFKRLFMADNSR----IALKDAKGRTAAHQAAARNRVNILRYIRDQNGDFNAKD 120

Query: 255 KEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKD 308
               +PL +A     +       +  V+T +LN KKQA +HLATELNKV  L ++ QY++
Sbjct: 121 NAGNTPLHIAVESDAYDALDYLLSIPVDTGVLNEKKQAPVHLATELNKVKSLRVMGQYRN 180

Query: 309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
           +IDI QGGEHGRTALH+AAIYD +ECARIL+ +F A  ++ C+NGYYPIH+AAKNASSKT
Sbjct: 181 VIDIQQGGEHGRTALHLAAIYDHEECARILITEFDACPRKPCNNGYYPIHEAAKNASSKT 240

Query: 369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
           MEVF Q+GE  GC+REEMIS + +EGN+PLHSAVHGGD KAVELCLKSGAKISTQQ DLS
Sbjct: 241 MEVFFQWGEQRGCTREEMISFYDSEGNVPLHSAVHGGDIKAVELCLKSGAKISTQQHDLS 300

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
           TPVHLAC+QGA+DIV+LMF +QP EK +CL+ TD QKMTPLHCA+MFD  D+V YL+ EG
Sbjct: 301 TPVHLACAQGAIDIVKLMFEMQPMEKRLCLSCTDVQKMTPLHCASMFDHPDIVSYLVAEG 360

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
           AD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++N GG + +
Sbjct: 361 ADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMN-GGRLTD 419

Query: 549 FAEEVA--------AVFLG----------------------ENLINLGACINLKNNSNES 578
           FAE+VA         + L                       ENLI LGACINLKNN+NES
Sbjct: 420 FAEQVANCQTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLKNNNNES 479

Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           PLH AARYGRYNTV++LL SE+GSFIINESDG G+TPLHI+S++G
Sbjct: 480 PLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQG 524

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|358681383|gb|AEU17952.1| TRPA1(A) isoform [Drosophila melanogaster]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/467 (57%), Positives = 332/467 (71%), Gaps = 41/467 (8%)

Query: 193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
           A   G LD  + +F    S     +   DA+  T  H AA  +R ++++Y+ D+  D N 
Sbjct: 117 AAESGNLDDFKRLFMADNSR----IALKDAKGRTAAHQAAARNRVNILRYIRDQNGDFNA 172

Query: 253 LDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
            D    +PL +A     +       +  V+T +LN KKQA +HLATELNKV  L ++ QY
Sbjct: 173 KDNAGNTPLHIAVESDAYDALDYLLSIPVDTGVLNEKKQAPVHLATELNKVKSLRVMGQY 232

Query: 307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASS 366
           +++IDI QGGEHGRTALH+AAIYD +ECARIL+ +F A  ++ C+NGYYPIH+AAKNASS
Sbjct: 233 RNVIDIQQGGEHGRTALHLAAIYDHEECARILITEFDACPRKPCNNGYYPIHEAAKNASS 292

Query: 367 KTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 426
           KTMEVF Q+GE  GC+REEMIS + +EGN+PLHSAVHGGD KAVELCLKSGAKISTQQ D
Sbjct: 293 KTMEVFFQWGEQRGCTREEMISFYDSEGNVPLHSAVHGGDIKAVELCLKSGAKISTQQHD 352

Query: 427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 486
           LSTPVHLAC+QGA+DIV+LMF +QP EK +CL+ TD QKMTPLHCA+MFD  D+V YL+ 
Sbjct: 353 LSTPVHLACAQGAIDIVKLMFEMQPMEKRLCLSCTDVQKMTPLHCASMFDHPDIVSYLVA 412

Query: 487 EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 546
           EGAD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++N GG +
Sbjct: 413 EGADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMN-GGRL 471

Query: 547 KEFAEEVA--------AVFLG----------------------ENLINLGACINLKNNSN 576
            +FAE+VA         + L                       ENLI LGACINLKNN+N
Sbjct: 472 TDFAEQVANCQTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLKNNNN 531

Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           ESPLH AARYGRYNTV++LL SE+GSFIINESDG G+TPLHI+S++G
Sbjct: 532 ESPLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQG 578

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428457|ref|XP_002062289.1| GK17464 [Drosophila willistoni] gi|194158374|gb|EDW73275.1| GK17464 [Drosophila willistoni]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/438 (60%), Positives = 321/438 (73%), Gaps = 36/438 (8%)

Query: 221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK------TNG 274
           D +  T  H AA  +R +++ Y+ D+  D N  D    +PL +A     +       +  
Sbjct: 92  DGKGRTAAHQAAARNRVNILSYIRDQSGDFNAKDNAGNTPLHIAVECDAYDALDYLLSIP 151

Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
           V+T ILN KKQA +HLATELNKV  L ++ QY+++IDI QGGEHGRTALH+AAIYD +EC
Sbjct: 152 VDTGILNEKKQAPVHLATELNKVKSLQVMGQYRNVIDIQQGGEHGRTALHLAAIYDHEEC 211

Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
           ARIL+ +F A  +R C+NGYYPIH+AAKNASSKTMEVF Q+GE  GC+REEMIS + +EG
Sbjct: 212 ARILITEFDACPRRPCNNGYYPIHEAAKNASSKTMEVFFQWGEQRGCTREEMISFYDSEG 271

Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEK 454
           N+PLHSAVHGGD KAVELCLKSGAKISTQQ DLSTPVHLAC+QGA+DIV+LMF +QP EK
Sbjct: 272 NVPLHSAVHGGDIKAVELCLKSGAKISTQQHDLSTPVHLACAQGAIDIVKLMFEMQPLEK 331

Query: 455 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
            +CL+ TD QKMTPLHCA+MFD  D+V YL+ EGAD+N LDKE RSPLLLAASR GWKTV
Sbjct: 332 RICLSCTDVQKMTPLHCASMFDHPDIVSYLVAEGADINALDKEHRSPLLLAASRSGWKTV 391

Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA-------AVFLG-------- 559
             L+R  A I +KD   RN+LH +++N GG + +FAE+VA        + L         
Sbjct: 392 HLLIRLGACISVKDAAARNVLHFVIMN-GGRLTDFAEQVAKCQTQELKLLLNEKDNMGCS 450

Query: 560 --------------ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
                         ENLI LGACINLKNN+NESPLH AARYGRYNTV++LL SE+GSFII
Sbjct: 451 PLHYASRDGHIRSLENLIRLGACINLKNNNNESPLHFAARYGRYNTVRQLLDSEKGSFII 510

Query: 606 NESDGEGLTPLHIASKEG 623
           NESDG G+TPLHIAS++G
Sbjct: 511 NESDGAGMTPLHIASQQG 528

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442631145|ref|NP_001097554.4| transient receptor potential A1, isoform J [Drosophila melanogaster] gi|358681256|gb|AEU17863.1| TRPA1 isoform B [Drosophila melanogaster] gi|440215512|gb|ABW08500.4| transient receptor potential A1, isoform J [Drosophila melanogaster]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/525 (53%), Positives = 353/525 (67%), Gaps = 64/525 (12%)

Query: 139 GCSRE-EMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPV--HL-AC 194
           GC+RE EM ++  A  NLP                 K  A+I         P+  +L A 
Sbjct: 24  GCAREPEMTAM--APLNLP-----------------KKWARILRMSSTPKIPIVDYLEAA 64

Query: 195 SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
             G LD  + +F    S     +   DA+  T  H AA  +R ++++Y+ D+  D N  D
Sbjct: 65  ESGNLDDFKRLFMADNSR----IALKDAKGRTAAHQAAARNRVNILRYIRDQNGDFNAKD 120

Query: 255 KEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKD 308
               +PL +A     +       +  V+T +LN KKQA +HLATELNKV  L ++ QY++
Sbjct: 121 NAGNTPLHIAVESDAYDALDYLLSIPVDTGVLNEKKQAPVHLATELNKVKSLRVMGQYRN 180

Query: 309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
           +IDI QGGEHGRTALH+AAIYD +ECARIL+ +F A  ++ C+NGYYPIH+AAKNASSKT
Sbjct: 181 VIDIQQGGEHGRTALHLAAIYDHEECARILITEFDACPRKPCNNGYYPIHEAAKNASSKT 240

Query: 369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
           MEVF Q+GE  GC+REEMIS + +EGN+PLHSAVHGGD KAVELCLKSGAKISTQQ DLS
Sbjct: 241 MEVFFQWGEQRGCTREEMISFYDSEGNVPLHSAVHGGDIKAVELCLKSGAKISTQQHDLS 300

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
           TPVHLAC+QGA+DIV+LMF +QP EK +CL+ TD QKMTPLHCA+MFD  D+V YL+ EG
Sbjct: 301 TPVHLACAQGAIDIVKLMFEMQPMEKRLCLSCTDVQKMTPLHCASMFDHPDIVSYLVAEG 360

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
           AD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++N GG + +
Sbjct: 361 ADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMN-GGRLTD 419

Query: 549 FAEEVA--------AVFLG----------------------ENLINLGACINLKNNSNES 578
           FAE+VA         + L                       ENLI LGACINLKNN+NES
Sbjct: 420 FAEQVANCQTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLKNNNNES 479

Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           PLH AARYGRYNTV++LL SE+GSFIINESDG G+TPLHI+S++G
Sbjct: 480 PLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQG 524

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|238054359|sp|Q7Z020.3|TRPA1_DROME RecName: Full=Transient receptor potential cation channel subfamily A member 1; Short=dTRPA1; AltName: Full=Ankyrin-like with transmembrane domains protein 1; Short=dANKTM1

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 283/525 (53%), Positives = 353/525 (67%), Gaps = 64/525 (12%)

Query: 139 GCSRE-EMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPV--HL-AC 194
           GC+RE EM ++  A  NLP                 K  A+I         P+  +L A 
Sbjct: 123 GCAREPEMTAM--APLNLP-----------------KKWARILRMSSTPKIPIVDYLEAA 163

Query: 195 SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
             G LD  + +F    S     +   DA+  T  H AA  +R ++++Y+ D+  D N  D
Sbjct: 164 ESGNLDDFKRLFMADNSR----IALKDAKGRTAAHQAAARNRVNILRYIRDQNGDFNAKD 219

Query: 255 KEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKD 308
               +PL +A     +       +  V+T +LN KKQA +HLATELNKV  L ++ QY++
Sbjct: 220 NAGNTPLHIAVESDAYDALDYLLSIPVDTGVLNEKKQAPVHLATELNKVKSLRVMGQYRN 279

Query: 309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
           +IDI QGGEHGRTALH+AAIYD +ECARIL+ +F A  ++ C+NGYYPIH+AAKNASSKT
Sbjct: 280 VIDIQQGGEHGRTALHLAAIYDHEECARILITEFDACPRKPCNNGYYPIHEAAKNASSKT 339

Query: 369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
           MEVF Q+GE  GC+REEMIS + +EGN+PLHSAVHGGD KAVELCLKSGAKISTQQ DLS
Sbjct: 340 MEVFFQWGEQRGCTREEMISFYDSEGNVPLHSAVHGGDIKAVELCLKSGAKISTQQHDLS 399

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
           TPVHLAC+QGA+DIV+LMF +QP EK +CL+ TD QKMTPLHCA+MFD  D+V YL+ EG
Sbjct: 400 TPVHLACAQGAIDIVKLMFEMQPMEKRLCLSCTDVQKMTPLHCASMFDHPDIVSYLVAEG 459

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
           AD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++N GG + +
Sbjct: 460 ADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMN-GGRLTD 518

Query: 549 FAEEVA--------AVFLG----------------------ENLINLGACINLKNNSNES 578
           FAE+VA         + L                       ENLI LGACINLKNN+NES
Sbjct: 519 FAEQVANCQTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLKNNNNES 578

Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           PLH AARYGRYNTV++LL SE+GSFIINESDG G+TPLHI+S++G
Sbjct: 579 PLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQG 623

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442631139|ref|NP_001261600.1| transient receptor potential A1, isoform G [Drosophila melanogaster] gi|356892152|gb|AET41695.1| TRPA1 isoform D [Drosophila melanogaster] gi|440215509|gb|AGB94295.1| transient receptor potential A1, isoform G [Drosophila melanogaster]

 Score =  526 bits (1356), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/467 (57%), Positives = 332/467 (71%), Gaps = 41/467 (8%)

Query: 193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
           A   G LD  + +F    S     +   DA+  T  H AA  +R ++++Y+ D+  D N 
Sbjct: 98  AAESGNLDDFKRLFMADNSR----IALKDAKGRTAAHQAAARNRVNILRYIRDQNGDFNA 153

Query: 253 LDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
            D    +PL +A     +       +  V+T +LN KKQA +HLATELNKV  L ++ QY
Sbjct: 154 KDNAGNTPLHIAVESDAYDALDYLLSIPVDTGVLNEKKQAPVHLATELNKVKSLRVMGQY 213

Query: 307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASS 366
           +++IDI QGGEHGRTALH+AAIYD +ECARIL+ +F A  ++ C+NGYYPIH+AAKNASS
Sbjct: 214 RNVIDIQQGGEHGRTALHLAAIYDHEECARILITEFDACPRKPCNNGYYPIHEAAKNASS 273

Query: 367 KTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 426
           KTMEVF Q+GE  GC+REEMIS + +EGN+PLHSAVHGGD KAVELCLKSGAKISTQQ D
Sbjct: 274 KTMEVFFQWGEQRGCTREEMISFYDSEGNVPLHSAVHGGDIKAVELCLKSGAKISTQQHD 333

Query: 427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 486
           LSTPVHLAC+QGA+DIV+LMF +QP EK +CL+ TD QKMTPLHCA+MFD  D+V YL+ 
Sbjct: 334 LSTPVHLACAQGAIDIVKLMFEMQPMEKRLCLSCTDVQKMTPLHCASMFDHPDIVSYLVA 393

Query: 487 EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 546
           EGAD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++N GG +
Sbjct: 394 EGADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMN-GGRL 452

Query: 547 KEFAEEVA--------AVFLG----------------------ENLINLGACINLKNNSN 576
            +FAE+VA         + L                       ENLI LGACINLKNN+N
Sbjct: 453 TDFAEQVANCQTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLKNNNN 512

Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           ESPLH AARYGRYNTV++LL SE+GSFIINESDG G+TPLHI+S++G
Sbjct: 513 ESPLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQG 559

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442631147|ref|NP_001261602.1| transient receptor potential A1, isoform K [Drosophila melanogaster] gi|440215513|gb|AGB94297.1| transient receptor potential A1, isoform K [Drosophila melanogaster]

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/467 (57%), Positives = 332/467 (71%), Gaps = 41/467 (8%)

Query: 193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
           A   G LD  + +F    S     +   DA+  T  H AA  +R ++++Y+ D+  D N 
Sbjct: 98  AAESGNLDDFKRLFMADNSR----IALKDAKGRTAAHQAAARNRVNILRYIRDQNGDFNA 153

Query: 253 LDKEKRSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
            D    +PL +A     +       +  V+T +LN KKQA +HLATELNKV  L ++ QY
Sbjct: 154 KDNAGNTPLHIAVESDAYDALDYLLSIPVDTGVLNEKKQAPVHLATELNKVKSLRVMGQY 213

Query: 307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASS 366
           +++IDI QGGEHGRTALH+AAIYD +ECARIL+ +F A  ++ C+NGYYPIH+AAKNASS
Sbjct: 214 RNVIDIQQGGEHGRTALHLAAIYDHEECARILITEFDACPRKPCNNGYYPIHEAAKNASS 273

Query: 367 KTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 426
           KTMEVF Q+GE  GC+REEMIS + +EGN+PLHSAVHGGD KAVELCLKSGAKISTQQ D
Sbjct: 274 KTMEVFFQWGEQRGCTREEMISFYDSEGNVPLHSAVHGGDIKAVELCLKSGAKISTQQHD 333

Query: 427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 486
           LSTPVHLAC+QGA+DIV+LMF +QP EK +CL+ TD QKMTPLHCA+MFD  D+V YL+ 
Sbjct: 334 LSTPVHLACAQGAIDIVKLMFEMQPMEKRLCLSCTDVQKMTPLHCASMFDHPDIVSYLVA 393

Query: 487 EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 546
           EGAD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++N GG +
Sbjct: 394 EGADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMN-GGRL 452

Query: 547 KEFAEEVA--------AVFLG----------------------ENLINLGACINLKNNSN 576
            +FAE+VA         + L                       ENLI LGACINLKNN+N
Sbjct: 453 TDFAEQVANCQTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLIRLGACINLKNNNN 512

Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           ESPLH AARYGRYNTV++LL SE+GSFIINESDG G+TPLHI+S++G
Sbjct: 513 ESPLHFAARYGRYNTVRQLLDSEKGSFIINESDGAGMTPLHISSQQG 559

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	641
FB|FBgn0035934	1296	TrpA1 "Transient receptor pote	0.663	0.327	0.533	1.5e-115
ZFIN|ZDB-GENE-050105-6	1126	trpa1a "transient receptor pot	0.611	0.348	0.347	1.8e-50
UNIPROTKB|E1C7Y7	1074	TRPA1 "Uncharacterized protein	0.613	0.365	0.338	2.4e-49
UNIPROTKB|E1BZK9	1075	TRPA1 "Uncharacterized protein	0.613	0.365	0.338	2.4e-49
UNIPROTKB|F1Q2M0	1117	TRPA1 "Uncharacterized protein	0.739	0.424	0.298	1.8e-47
UNIPROTKB|O75762	1119	TRPA1 "Transient receptor pote	0.739	0.423	0.306	7.9e-47
RGD|1303284	1125	Trpa1 "transient receptor pote	0.739	0.421	0.298	1.1e-44
UNIPROTKB|G5E522	1126	TRPA1 "Uncharacterized protein	0.736	0.419	0.295	1.8e-44
MGI|MGI:3522699	1125	Trpa1 "transient receptor pote	0.739	0.421	0.296	3.8e-44
UNIPROTKB|H0YAW0	916	TRPA1 "Transient receptor pote	0.692	0.484	0.308	2.9e-43

FB|FBgn0035934 TrpA1 "Transient receptor potential A1" [Drosophila melanogaster (taxid:7227)]

 Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 236/442 (53%), Positives = 305/442 (69%)

Query:   193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
             A   G LD  + +F    S   + L   DA+  T  H AA  +R ++++Y+ D+  D N 
Sbjct:   162 AAESGNLDDFKRLFMADNSR--IALK--DAKGRTAAHQAAARNRVNILRYIRDQNGDFNA 217

Query:   253 LDKEKRSPLLLAASRGGWKTNG------VNTRILNNKKQAVLHLATELNKVPILLILLQY 306
              D    +PL +A     +          V+T +LN KKQA +HLATELNKV  L ++ QY
Sbjct:   218 KDNAGNTPLHIAVESDAYDALDYLLSIPVDTGVLNEKKQAPVHLATELNKVKSLRVMGQY 277

Query:   307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASS 366
             +++IDI QGGEHGRTALH+AAIYD +ECARIL+ +F A  ++ C+NGYYPIH+AAKNASS
Sbjct:   278 RNVIDIQQGGEHGRTALHLAAIYDHEECARILITEFDACPRKPCNNGYYPIHEAAKNASS 337

Query:   367 KTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 426
             KTMEVF Q+GE  GC+REEMIS + +EGN+PLHSAVHGGD KAVELCLKSGAKISTQQ D
Sbjct:   338 KTMEVFFQWGEQRGCTREEMISFYDSEGNVPLHSAVHGGDIKAVELCLKSGAKISTQQHD 397

Query:   427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 486
             LSTPVHLAC+QGA+DIV+LMF +QP EK +CL+ TD QKMTPLHCA+MFD  D+V YL+ 
Sbjct:   398 LSTPVHLACAQGAIDIVKLMFEMQPMEKRLCLSCTDVQKMTPLHCASMFDHPDIVSYLVA 457

Query:   487 EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 546
             EGAD+N LDKE RSPLLLAASR GWKTV  L+R  A I +KD   RN+LH +++NGG  +
Sbjct:   458 EGADINALDKEHRSPLLLAASRSGWKTVHLLIRLGACISVKDAAARNVLHFVIMNGG-RL 516

Query:   547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIIN 606
              +FAE+VA     +    L   +N K++   SPLH A+R G   +++ L+   R    IN
Sbjct:   517 TDFAEQVANC---QTQAQLKLLLNEKDSMGCSPLHYASRDGHIRSLENLI---RLGACIN 570

Query:   607 ESDGEGLTPLHIASKEGFHYSV 628
               +    +PLH A++ G + +V
Sbjct:   571 LKNNNNESPLHFAARYGRYNTV 592

GO:0006816 "calcium ion transport" evidence=ISS

GO:0005262 "calcium channel activity" evidence=ISS

GO:0009266 "response to temperature stimulus" evidence=NAS

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043052 "thermotaxis" evidence=IDA;IMP

GO:0009408 "response to heat" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IDA

GO:0042745 "circadian sleep/wake cycle" evidence=IMP

GO:0007613 "memory" evidence=IMP

GO:0033038 "bitter taste receptor activity" evidence=IDA

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IMP

GO:0040040 "thermosensory behavior" evidence=IMP

GO:0007638 "mechanosensory behavior" evidence=IMP

ZFIN|ZDB-GENE-050105-6 trpa1a "transient receptor potential cation channel, subfamily A, member 1a" [Danio rerio (taxid:7955)]

 Score = 535 (193.4 bits), Expect = 1.8e-50, P = 1.8e-50
 Identities = 145/417 (34%), Positives = 226/417 (54%)

Query:   217 LNSTDAQKMTPLHCAAMFDRCDVVQYLID-EG-ADLNVLDKEKRSPLLLAASR---GGWK 271
             L++ D    +PLH A+      ++++++   G  +LNV D+E  +PL  A  +   G   
Sbjct:    65 LDTRDNIGASPLHYASANGHFRIIRHIVQIVGHQELNVRDEEGNTPLHWAVQKDQPGSCS 124

Query:   272 ---TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI 328
                + G +  +LNN  QA +H+A  L K  +L  L+ +K   D+   G+ G T + ++A 
Sbjct:   125 VLLSLGADPNVLNNSHQAPIHMAVSLGKNFVLEQLVSHKQT-DVNLEGDLGNTPVILSAA 183

Query:   329 YDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 388
              D  E   IL K  GA   R  + G++PIH AA + + K+MEV L  GE  G S +  I+
Sbjct:   184 LDNHEALGILYKH-GAKFCRQNNLGHFPIHAAAFSGAKKSMEVILLKGEEAGLSIDAHIN 242

Query:   389 LFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 448
                   + PLH AV GG+   ++LC+  GAKI  QQ D ST +H ACSQGA ++V++M +
Sbjct:   243 YVDKSCSSPLHLAVRGGNLDIIKLCIGYGAKIDQQQCDKSTALHFACSQGATEVVKIMLS 302

Query:   449 LQPSEKLVC--LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 506
               P    VC  +N TD    TPLH A +FD  ++ +YL+ +GA+++ +D +  SPLLLA 
Sbjct:   303 SYPK---VCDLINITDGANQTPLHKAVIFDHFELSEYLMSQGANIDFVDCKGHSPLLLAT 359

Query:   507 SRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG 566
             S G W+TV  L+ + A++  KD +  N LHL +L   G +K    EV      E++  L 
Sbjct:   360 SCGAWRTVNLLLSHGADLTKKDKSGCNFLHLAILQPRG-LKNLPTEVLQ---HESVREL- 414

Query:   567 ACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
               +N ++    +PLH A R G  ++VK +L  E     +++   E  + LH A++ G
Sbjct:   415 --LNDEDIEGCTPLHYACRLGIPDSVKNMLGLEVS---LDQKSKEKKSALHFAAEFG 466

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0070542 "response to fatty acid" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA

GO:0050974 "detection of mechanical stimulus involved in sensory perception" evidence=IMP

GO:0015276 "ligand-gated ion channel activity" evidence=IDA

GO:0009593 "detection of chemical stimulus" evidence=IDA

GO:0050960 "detection of temperature stimulus involved in thermoception" evidence=IMP

GO:0008381 "mechanically-gated ion channel activity" evidence=IMP

UNIPROTKB|E1C7Y7 TRPA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 524 (189.5 bits), Expect = 2.4e-49, P = 2.4e-49
 Identities = 141/416 (33%), Positives = 220/416 (52%)

Query:   217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD--LNVLDKEKRSPLLLAASRGGWKT-- 272
             L   D    TPLH AA   + +++Q +ID+ +   LNV+D    +PL  A  +   ++  
Sbjct:    61 LTKVDELNATPLHHAAEGGQIELMQLIIDDSSSEVLNVMDSSGNTPLHWATRKNQVESVR 120

Query:   273 ----NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI 328
                  G N  ILN+   A LH+A +     I+ IL+Q+    D+   GE G T + +A  
Sbjct:   121 LLLSRGANPNILNSNMMAPLHMAIQSLHNEIVKILVQHSST-DVNLEGEAGNTPIIVACY 179

Query:   329 YDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 388
              D  E    L+++ G  + +    G  PIH AA + +   ME+ L+ GE +G S +  I+
Sbjct:   180 KDNPEALTFLIEN-GGKICKPNKTGCMPIHAAAFSGAKTCMEILLKKGEELGHSAKTHIN 238

Query:   389 LFAAEGNL-PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
              F   G   PLH AV  GD + +++C++ GA+I  +Q +  T +H A +QGA +IV+LM 
Sbjct:   239 -FTNNGKCSPLHLAVQSGDLEMIKMCIEFGAQIDLKQNEKCTALHFAATQGATEIVKLMM 297

Query:   448 NLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
             +    ++ + +++ D  K T LH  A+FD  ++ +YLI  GA+++ +D E RSPLLLA S
Sbjct:   298 SSYAGDESI-IDAVDGNKETLLHRTALFDHYELAEYLISTGANIDSVDTEGRSPLLLATS 356

Query:   508 RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGA 567
                WK V  L+   AN+ LKD   RN LHL VL  GG ++   E+   +   E++ NL  
Sbjct:   357 CASWKIVNLLLSKGANVSLKDHLGRNFLHLTVLQPGG-LQHLNEKFLQM---EHIKNL-- 410

Query:   568 CINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
              ++ ++N   +PLH A R G   +V  LLS    +  I     +  +PLH A+  G
Sbjct:   411 VVD-EDNEGCTPLHYACRQGVALSVNNLLSL---NVSIYSKSRDKKSPLHFAASYG 462

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BZK9 TRPA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 524 (189.5 bits), Expect = 2.4e-49, P = 2.4e-49
 Identities = 141/416 (33%), Positives = 220/416 (52%)

Query:   217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD--LNVLDKEKRSPLLLAASRGGWKT-- 272
             L   D    TPLH AA   + +++Q +ID+ +   LNV+D    +PL  A  +   ++  
Sbjct:    61 LTKVDELNATPLHHAAEGGQIELMQLIIDDSSSEVLNVMDSSGNTPLHWATRKNQVESVR 120

Query:   273 ----NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI 328
                  G N  ILN+   A LH+A +     I+ IL+Q+    D+   GE G T + +A  
Sbjct:   121 LLLSRGANPNILNSNMMAPLHMAIQSLHNEIVKILVQHSST-DVNLEGEAGNTPIIVACY 179

Query:   329 YDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 388
              D  E    L+++ G  + +    G  PIH AA + +   ME+ L+ GE +G S +  I+
Sbjct:   180 KDNPEALTFLIEN-GGKICKPNKTGCMPIHAAAFSGAKTCMEILLKKGEELGHSAKTHIN 238

Query:   389 LFAAEGNL-PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 447
              F   G   PLH AV  GD + +++C++ GA+I  +Q +  T +H A +QGA +IV+LM 
Sbjct:   239 -FTNNGKCSPLHLAVQSGDLEMIKMCIEFGAQIDLKQNEKCTALHFAATQGATEIVKLMM 297

Query:   448 NLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
             +    ++ + +++ D  K T LH  A+FD  ++ +YLI  GA+++ +D E RSPLLLA S
Sbjct:   298 SSYAGDESI-IDAVDGNKETLLHRTALFDHYELAEYLISTGANIDSVDTEGRSPLLLATS 356

Query:   508 RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGA 567
                WK V  L+   AN+ LKD   RN LHL VL  GG ++   E+   +   E++ NL  
Sbjct:   357 CASWKIVNLLLSKGANVSLKDHLGRNFLHLTVLQPGG-LQHLNEKFLQM---EHIKNL-- 410

Query:   568 CINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
              ++ ++N   +PLH A R G   +V  LLS    +  I     +  +PLH A+  G
Sbjct:   411 VVD-EDNEGCTPLHYACRQGVALSVNNLLSL---NVSIYSKSRDKKSPLHFAASYG 462

GO:0016021 "integral to membrane" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0050955 "thermoception" evidence=IEA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA

UNIPROTKB|F1Q2M0 TRPA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 507 (183.5 bits), Expect = 1.8e-47, P = 1.8e-47
 Identities = 153/513 (29%), Positives = 243/513 (47%)

Query:    20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             S G N  + N+   A LH+A +     ++ +L ++    DI   GE+G TA+ IA + D 
Sbjct:   120 SKGANPNLRNSNMMAPLHIAVQGLHNEVIKVLTEHNST-DINLEGENGNTAVIIACLKDN 178

Query:    80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
              E  +IL+++            GA   ++   G +PIH AA + + K ME+ L+FGE  G
Sbjct:   179 SEALQILLNK------------GAKPCKSNKWGCFPIHQAAFSGAKKCMEIILKFGEEHG 226

Query:   140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
              SR+  I+  +   + PLH AV  GD + +++CL +GA +   +    TP+H A +QGA 
Sbjct:   227 YSRQSHINFVNNGKSSPLHMAVQSGDLEMIKMCLDNGAHLELMENGKCTPLHFAATQGAT 286

Query:   200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
             +IV+LM +       + +N+ D  + T LH A++FD  ++  YLI  GAD+N  D E RS
Sbjct:   287 EIVKLMISSYSGSSDI-VNAVDGNQETLLHRASLFDHHELADYLISVGADINSTDSEGRS 345

Query:   260 PLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATEL-----NKVPILLILLQYKD 308
             PL+LA +   W       + G    I +N  +  LHL  +      N  P  + +   K+
Sbjct:   346 PLILATASASWNIVNLLLSKGARVDIKDNLGRNFLHLTVQQPYGLKNLRPEFMQMQHIKN 405

Query:   309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
             ++  +   + G T LH A  +        L+ DF  SL+    +   P+H AA      T
Sbjct:   406 LV--MDEDDDGCTPLHYACRHGIPVSVNNLL-DFNVSLRSKSKDKKSPLHFAASYGRINT 462

Query:   369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
              +  LQ       S   +++     G  PLH A   G  K V+L LK GA +     +  
Sbjct:   463 CQRLLQ-----DMSDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGW 516

Query:   429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
             T +H A   G    ++++ +      L C +  D +  T LH AA       V  L+   
Sbjct:   517 TALHHASLGGYTQTMKVILDTN----LKCTDLLDEEGNTALHFAAREGHAKAVALLLSYD 572

Query:   489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
             A + VL+K++ S L +A      + VLT ++NK
Sbjct:   573 AAI-VLNKQQASFLHVAIHNKRKEVVLTTIKNK 604

GO:0016021 "integral to membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

UNIPROTKB|O75762 TRPA1 "Transient receptor potential cation channel subfamily A member 1" [Homo sapiens (taxid:9606)]

 Score = 501 (181.4 bits), Expect = 7.9e-47, P = 7.9e-47
 Identities = 157/513 (30%), Positives = 244/513 (47%)

Query:    20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             S G N  + N    A LH+A +     ++ +LL+++  ID+   GE+G TA+ IA   + 
Sbjct:   119 SRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRT-IDVNLEGENGNTAVIIACTTNN 177

Query:    80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
              E  +IL+ +            GA   ++   G +PIH AA + S + ME+ L+FGE  G
Sbjct:   178 SEALQILLKK------------GAKPCKSNKWGCFPIHQAAFSGSKECMEIILRFGEEHG 225

Query:   140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
              SR+  I+  +     PLH AV  GD + +++CL +GA+I   +    T +H A +QGA 
Sbjct:   226 YSRQLHINFMNNGKATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGAT 285

Query:   200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
             +IV+LM +   S  +  +N+TD    T LH A++FD  ++  YLI  GAD+N +D E RS
Sbjct:   286 EIVKLMISSY-SGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRS 344

Query:   260 PLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATEL-----NKVPILLILLQYKD 308
             PL+LA +   W       + G    I +N  +  LHL  +      N  P  + + Q K+
Sbjct:   345 PLILATASASWNIVNLLLSKGAQVDIKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQIKE 404

Query:   309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
             ++  +     G T LH A           L+  F  S+     +   P+H AA      T
Sbjct:   405 LV--MDEDNDGCTPLHYACRQGGPGSVNNLL-GFNVSIHSKSKDKKSPLHFAASYGRINT 461

Query:   369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
              +  LQ    I  +R  +++     G  PLH A   G  K V+L LK GA +     +  
Sbjct:   462 CQRLLQ---DISDTR--LLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGW 515

Query:   429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
             T +H A   G    ++++ +      L C +  D    T LH AA       V  L+   
Sbjct:   516 TALHHASMGGYTQTMKVILDTN----LKCTDRLDEDGNTALHFAAREGHAKAVALLLSHN 571

Query:   489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
             AD+ VL+K++ S L LA      + VLT++R+K
Sbjct:   572 ADI-VLNKQQASFLHLALHNKRKEVVLTIIRSK 603

GO:0005262 "calcium channel activity" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0050955 "thermoception" evidence=IEA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA

GO:0015267 "channel activity" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

RGD|1303284 Trpa1 "transient receptor potential cation channel, subfamily A, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 481 (174.4 bits), Expect = 1.1e-44, P = 1.1e-44
 Identities = 153/513 (29%), Positives = 236/513 (46%)

Query:    20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             S G N  + N    A LH+A +     ++ +L ++K   +I   GE+G TAL      D 
Sbjct:   120 SQGANPNLRNRNMMAPLHIAVQGMYNEVIKVLTEHK-ATNINLEGENGNTALMSTCAKDN 178

Query:    80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
              E  +IL+ +            GA L ++   G YP+H AA + + + ME+ L +GE  G
Sbjct:   179 SEALQILLEK------------GAKLCKSNKWGDYPVHQAAFSGAKRCMELILAYGEKTG 226

Query:   140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
              SRE  I+  + +   PLH AV  GD   +++CL SGA I   +      +H A +QGA 
Sbjct:   227 YSREAHINFVNHKKASPLHLAVQSGDLDMIKMCLDSGAHIDMMENAKCMALHFAATQGAT 286

Query:   200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
             DIV+LM +       + +N+ D  + T LH A++FD  D+  YLI  GAD+N  D E RS
Sbjct:   287 DIVKLMISSYTGSSDI-VNAVDGNQETLLHRASLFDHHDLADYLISVGADINSTDSEGRS 345

Query:   260 PLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATEL-----NKVPILLILLQYKD 308
             PL+LA +   W       + G    I ++  +  LHL  +      N  P  L +   K+
Sbjct:   346 PLILATASASWNIVNLLLSKGAKVDIKDHLGRNFLHLTVQQPYGLRNLRPEFLQMQHIKE 405

Query:   309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
             ++  +     G T LH A           L++ F  S+     +   P+H AA      T
Sbjct:   406 LV--MDEDNDGCTPLHYACRQGAPVSVNNLLR-FNVSVHSKSKDKKSPLHFAASYGRINT 462

Query:   369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
              +  LQ    I  +R  +++     G  PLH A   G  K V+L LK GA +     +  
Sbjct:   463 CQRLLQ---DISDTR--LLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGW 516

Query:   429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
             T +H A   G    ++++ +      L C +  D +  T LH AA       V  L+   
Sbjct:   517 TALHHASMGGYTQTMKVILDTN----LKCTDRLDEEGNTALHFAAREGHAKAVAMLLSYN 572

Query:   489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
             AD+ +L+K++ S L +A      + VLT +R+K
Sbjct:   573 ADI-LLNKKQASFLHIALHNKRKEVVLTTIRSK 604

GO:0005216 "ion channel activity" evidence=ISO

GO:0005262 "calcium channel activity" evidence=IEA;ISO

GO:0006811 "ion transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=ISO

GO:0009409 "response to cold" evidence=IEA;ISO

GO:0015267 "channel activity" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA;ISO

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0042493 "response to drug" evidence=IEA;ISO

GO:0042542 "response to hydrogen peroxide" evidence=IEA;ISO

GO:0048265 "response to pain" evidence=IEA;ISO

GO:0050896 "response to stimulus" evidence=IEA

GO:0050955 "thermoception" evidence=IEA;ISO

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA;ISO

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA;ISO

GO:0055085 "transmembrane transport" evidence=ISO

GO:0070588 "calcium ion transmembrane transport" evidence=ISO

UNIPROTKB|G5E522 TRPA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 479 (173.7 bits), Expect = 1.8e-44, P = 1.8e-44
 Identities = 151/511 (29%), Positives = 237/511 (46%)

Query:    22 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 81
             G N  + N    A LH+A +     ++ +L+++    D+   GE+G TAL I    D  E
Sbjct:   125 GANPNLRNCSMMAPLHVAVQGGYNDVMKVLIEHSST-DVNLEGENGNTALIITCFTDNSE 183

Query:    82 CARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCS 141
               ++L+++            GA   ++   G +PIH AA + + K ME+ L+FGE  G S
Sbjct:   184 AMQLLLNK------------GAKPCKSNKWGCFPIHQAAFSGAKKCMEIILKFGEEHGYS 231

Query:   142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
             R   I+  ++    PLH AV  GD   +++CL +GA++   +    T +H A +QGA +I
Sbjct:   232 RLSHINFVNSGKASPLHMAVQSGDLDMIKMCLDNGAQLDLLEKGKCTALHFAATQGATEI 291

Query:   202 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
             V+LM +       + +N  D    T LH A++FD  ++  YLI  GAD+++ D E RSPL
Sbjct:   292 VKLMVSSYSGNSDI-VNEVDGNHETLLHRASLFDHHELADYLISVGADIDITDSEGRSPL 350

Query:   262 LLAASRGGWKT------NGVNTRILNNKKQAVLHLATEL-----NKVPILLILLQYKDMI 310
             LLA +   W T       G    I +N  +  LHL  +      N  P  L +   K+++
Sbjct:   351 LLATASASWNTVNLLLSKGARVDIKDNLGRNFLHLTVQQPYGLKNLHPEFLQMQHIKELV 410

Query:   311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTME 370
               +     G T LH A           L+ +F  S+     +   P+H AA      T +
Sbjct:   411 --MDEDNDGCTPLHYACRQGVPVSVNNLL-NFNVSIHSKSKDKKSPLHFAASYGRINTCQ 467

Query:   371 VFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP 430
               LQ    I  +R  +++     G  PLH A   G  K V+L LK GA +     +  T 
Sbjct:   468 RLLQ---DISDTR--LLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGWTA 521

Query:   431 VHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 490
             +H A   G    ++++ +      L C +  D +  T LH AA       V  L+   AD
Sbjct:   522 LHHASLGGYTQTMKVILDTN----LKCTDRLDEEGNTALHFAAREGHAKAVSLLLSYDAD 577

Query:   491 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
             + VL+K++ S L +A      + VLT +R+K
Sbjct:   578 V-VLNKQQASFLHVAIHNKRKEVVLTTIRSK 607

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IEA

GO:0050955 "thermoception" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

GO:0042542 "response to hydrogen peroxide" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0032421 "stereocilium bundle" evidence=IEA

GO:0009409 "response to cold" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3522699 Trpa1 "transient receptor potential cation channel, subfamily A, member 1" [Mus musculus (taxid:10090)]

 Score = 476 (172.6 bits), Expect = 3.8e-44, P = 3.8e-44
 Identities = 152/513 (29%), Positives = 234/513 (45%)

Query:    20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             S G N  + N    + LH+A       ++ +L ++K   +I   GE+G TAL      D 
Sbjct:   120 SQGANPNLRNRNMMSPLHIAVHGMYNEVIKVLTEHK-ATNINLEGENGNTALMSTCAKDN 178

Query:    80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
              E  +IL+ +            GA L ++   G YP+H AA + + K ME+ L +GE  G
Sbjct:   179 SEALQILLEK------------GAKLCKSNKWGDYPVHQAAFSGAKKCMELILAYGEKNG 226

Query:   140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
              SRE  I+  + +   PLH AV  GD   +++CL +GA I   +      +H A +QGA 
Sbjct:   227 YSRETHINFVNHKKASPLHLAVQSGDLDMIKMCLDNGAHIDMMENAKCMALHFAATQGAT 286

Query:   200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
             DIV+LM +       + +N+ D  + T LH A++FD  D+ +YLI  GAD+N  D E RS
Sbjct:   287 DIVKLMISSYTGSSDI-VNAVDGNQETLLHRASLFDHHDLAEYLISVGADINSTDSEGRS 345

Query:   260 PLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATEL-----NKVPILLILLQYKD 308
             PL+LA +   W         G    I ++  +  LHL  +      N  P  + +   K+
Sbjct:   346 PLILATASASWNIVNLLLCKGAKVDIKDHLGRNFLHLTVQQPYGLRNLRPEFMQMQHIKE 405

Query:   309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
             ++  +     G T LH A           L+  F  S+     +   P+H AA      T
Sbjct:   406 LV--MDEDNDGCTPLHYACRQGVPVSVNNLL-GFNVSIHSKSKDKKSPLHFAASYGRINT 462

Query:   369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
              +  LQ    I  +R  +++     G  PLH A   G  K V+L LK GA +     +  
Sbjct:   463 CQRLLQ---DISDTR--LLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGA-LFLSDHNGW 516

Query:   429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
             T +H A   G    ++++ +      L C +  D +  T LH AA       V  L+   
Sbjct:   517 TALHHASMGGYTQTMKVILDTN----LKCTDRLDEEGNTALHFAAREGHAKAVAMLLSYN 572

Query:   489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
             AD+ +L+K++ S L +A      + VLT +RNK
Sbjct:   573 ADI-LLNKKQASFLHIALHNKRKEVVLTTIRNK 604

GO:0005216 "ion channel activity" evidence=IDA;IMP

GO:0005262 "calcium channel activity" evidence=IMP;IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IMP;IDA

GO:0015267 "channel activity" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISS

GO:0032421 "stereocilium bundle" evidence=IDA

GO:0034220 "ion transmembrane transport" evidence=IDA;IMP

GO:0042493 "response to drug" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0048265 "response to pain" evidence=IDA;IMP

GO:0050896 "response to stimulus" evidence=IEA

GO:0050955 "thermoception" evidence=IDA

GO:0050966 "detection of mechanical stimulus involved in sensory perception of pain" evidence=IMP

GO:0050968 "detection of chemical stimulus involved in sensory perception of pain" evidence=IDA;IMP

GO:0055085 "transmembrane transport" evidence=IDA

GO:0070588 "calcium ion transmembrane transport" evidence=IMP;IDA

UNIPROTKB|H0YAW0 TRPA1 "Transient receptor potential cation channel subfamily A member 1" [Homo sapiens (taxid:9606)]

 Score = 470 (170.5 bits), Expect = 2.9e-43, P = 2.9e-43
 Identities = 149/483 (30%), Positives = 231/483 (47%)

Query:    50 ILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRAC 109
             +LL+++  ID+   GE+G TA+ IA   +  E  +IL+ +            GA   ++ 
Sbjct:     1 VLLEHRT-IDVNLEGENGNTAVIIACTTNNSEALQILLKK------------GAKPCKSN 47

Query:   110 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAV 169
               G +PIH AA + S + ME+ L+FGE  G SR+  I+  +     PLH AV  GD + +
Sbjct:    48 KWGCFPIHQAAFSGSKECMEIILRFGEEHGYSRQLHINFMNNGKATPLHLAVQNGDLEMI 107

Query:   170 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 229
             ++CL +GA+I   +    T +H A +QGA +IV+LM +   S  +  +N+TD    T LH
Sbjct:   108 KMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSY-SGSVDIVNTTDGCHETMLH 166

Query:   230 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK------TNGVNTRILNNK 283
              A++FD  ++  YLI  GAD+N +D E RSPL+LA +   W       + G    I +N 
Sbjct:   167 RASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKGAQVDIKDNF 226

Query:   284 KQAVLHLATEL-----NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
              +  LHL  +      N  P  + + Q K+++  +     G T LH A           L
Sbjct:   227 GRNFLHLTVQQPYGLKNLRPEFMQMQQIKELV--MDEDNDGCTPLHYACRQGGPGSVNNL 284

Query:   339 VKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPL 398
             +  F  S+     +   P+H AA      T +  LQ    I  +R  +++     G  PL
Sbjct:   285 L-GFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQ---DISDTR--LLNEGDLHGMTPL 338

Query:   399 HSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCL 458
             H A   G  K V+L LK GA +     +  T +H A   G    ++++ +      L C 
Sbjct:   339 HLAAKNGHDKVVQLLLKKGA-LFLSDHNGWTALHHASMGGYTQTMKVILDTN----LKCT 393

Query:   459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
             +  D    T LH AA       V  L+   AD+ VL+K++ S L LA      + VLT++
Sbjct:   394 DRLDEDGNTALHFAAREGHAKAVALLLSHNADI-VLNKQQASFLHLALHNKRKEVVLTII 452

Query:   519 RNK 521
             R+K
Sbjct:   453 RSK 455

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7Z020	TRPA1_DROME	No assigned EC number	0.5390	0.7191	0.3557	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	641
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-21
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-17
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-15
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-14
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-14
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.003
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.004
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.2 bits (245), Expect = 2e-24
 Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 12/138 (8%)

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           N+ D    TPLH AA     +VV+ L++ GAD+N  D + R+PL LAA  G  + V  L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
              A++  +D +    LHL   NG   + +             L+  GA +N ++    +
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKL------------LLKHGADVNARDKDGRT 108

Query: 579 PLHLAARYGRYNTVKKLL 596
           PLHLAA+ G    VK LL
Sbjct: 109 PLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.2 bits (245), Expect = 2e-24
 Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 5/119 (4%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           D +G  PLH A   G  + V+L L++GA ++ +  D  TP+HLA   G L+IV+L+    
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL--- 60

Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
             EK   +N+ D    TPLH AA     DVV+ L+  GAD+N  DK+ R+PL LAA  G
Sbjct: 61  --EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG 117

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.1 bits (242), Expect = 6e-24
 Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 5/126 (3%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           +G  PLH A   G  + V+L L++GA ++ +  D  TP+HLA   G L+IV+L+      
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL----- 60

Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
           EK   +N+ D    TPLH AA     DVV+ L+  GAD+N  DK+ R+PL LAA  G  +
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLE 120

Query: 513 TVLTLV 518
            V  L+
Sbjct: 121 VVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 15/139 (10%)

Query: 492 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 551
           N  D++ R+PL LAAS G  + V  L+ N A++  KD + R  LHL   NG   I +   
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKL-- 58

Query: 552 EVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGE 611
                     L+  GA +N ++    +PLHLAAR G  + VK LL        +N  D +
Sbjct: 59  ----------LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH---GADVNARDKD 105

Query: 612 GLTPLHIASKEGFHYSVSI 630
           G TPLH+A+K G    V +
Sbjct: 106 GRTPLHLAAKNGHLEVVKL 124

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.5 bits (225), Expect = 1e-21
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 8/128 (6%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT----- 272
           N+ D    TPLH AA     +VV+ L++ GAD+N  D + R+PL LAA  G  +      
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 273 -NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 331
             G +    +      LHLA     + ++ +LL++   ++     + GRT LH+AA    
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR--DKDGRTPLHLAAKNGH 118

Query: 332 DECARILV 339
            E  ++L+
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 91.9 bits (228), Expect = 8e-20
 Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 30/243 (12%)

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
           E I  ++   I++   E   PL  A+  GD K VEL +K GA I+     +  P+  A  
Sbjct: 18  EKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIK 77

Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
            GA DI+          KL+  N  D   + P+ C       D+++ ++D G D+N+ D 
Sbjct: 78  IGAHDII----------KLLIDNGVDTS-ILPIPCIEK----DMIKTILDCGIDVNIKDA 122

Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV 556
           E ++ L  A  +G  +++  L    A++ ++D N    +H+        IK    ++  +
Sbjct: 123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA-------IKHNFFDIIKL 175

Query: 557 FLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPL 616
            L E     GA  N+K+N+ ESPLH AA YG Y  +K L+    G+ I+N+    G TPL
Sbjct: 176 LL-EK----GAYANVKDNNGESPLHNAAEYGDYACIKLLIDH--GNHIMNKCK-NGFTPL 227

Query: 617 HIA 619
           H A
Sbjct: 228 HNA 230

Length = 434

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 82.4 bits (204), Expect = 8e-19
 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 9/130 (6%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
           E GRT LH+AA     E  ++L++  GA +    ++G  P+H AAKN   + +++ L+ G
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
                     ++    +GN PLH A   G+   V+L LK GA ++ +  D  TP+HLA  
Sbjct: 64  AD--------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAK 115

Query: 437 QGALDIVRLM 446
            G L++V+L+
Sbjct: 116 NGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.9 bits (200), Expect = 3e-18
 Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 20/141 (14%)

Query: 65  EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
           E GRT LH+AA     E  ++L+            + GA +    ++G  P+H AAKN  
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLL------------ENGADVNAKDNDGRTPLHLAAKNGH 52

Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
            + +++ L+ G  +        +  D +GN PLH A   G+   V+L LK GA ++ +  
Sbjct: 53  LEIVKLLLEKGADV--------NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK 104

Query: 185 DLSTPVHLACSQGALDIVRLM 205
           D  TP+HLA   G L++V+L+
Sbjct: 105 DGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.4 bits (191), Expect = 4e-17
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 13/135 (9%)

Query: 110 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAV 169
            +G  P+H AA N   + +++ L+ G  +        +  D +G  PLH A   G  + V
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADV--------NAKDNDGRTPLHLAAKNGHLEIV 56

Query: 170 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 229
           +L L+ GA ++ +  D +TP+HLA   G LD+V+L+      +    +N+ D    TPLH
Sbjct: 57  KLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLL-----KHGADVNARDKDGRTPLH 111

Query: 230 CAAMFDRCDVVQYLI 244
            AA     +VV+ L+
Sbjct: 112 LAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 83.5 bits (207), Expect = 5e-17
 Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 28/238 (11%)

Query: 394 GNLPLHSAVHGG---DFKAVELCLKSGAKISTQQFDLSTPVHL-ACSQGALDIVRLMFNL 449
           G  PLH  +H         V L L++GA ++  +    TP+HL   +   LD+++L+   
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLI-- 104

Query: 450 QPSEKLVCLNSTDAQKMTPLH--CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL--LLA 505
              +    +N+ D    TPLH   +       V++ L+ +GAD+N LD    +PL  LL 
Sbjct: 105 ---KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLK 161

Query: 506 ASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINL 565
           +     + +  L+   A++   D   R++LH        H  +  +  A +     LI  
Sbjct: 162 SRNANVELLRLLIDAGADVYAVDDRFRSLLH--------HHLQSFKPRARIV--RELIRA 211

Query: 566 GACINLKNNSNESPLHLAARYG--RYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
           G      +    +PLH  A     + + V  LL    G   IN  +  G TPLH A+ 
Sbjct: 212 GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL--IAGI-SINARNRYGQTPLHYAAV 266

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 72.7 bits (179), Expect = 8e-16
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
           LH A   G+ + V+L L+ GA ++    D  T +HLA   G L+IV+L+           
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG--DTDTALHLAARNGNLEIVKLLLEHGAD----- 53

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
           +N+ D    T LH AA     ++V+ L++ GAD+N+ D
Sbjct: 54  VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.0 bits (172), Expect = 7e-15
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 432 HLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL 491
           HLA   G L++V+L+            +       T LH AA     ++V+ L++ GAD+
Sbjct: 2   HLAAKNGNLELVKLLLEKGA-------DVNLGDTDTALHLAARNGNLEIVKLLLEHGADV 54

Query: 492 NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
           N  DK+  + L LAA  G  + V  L+ + A+I LKD
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 48/234 (20%)

Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA-----LDIVRLMFNLQ 450
           LPL+ A    +   V++ L +GA I++   + STP+H   +         +IV+L+    
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG 96

Query: 451 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDV--VQYLIDEGADLNVLDKEKRSPLLLAASR 508
                  +N+ D   +TPL  A          V+YL+D GA++N+ + +  + L L    
Sbjct: 97  -----ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES 151

Query: 509 GGWKT--VLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINL 565
                  +  L+    +I  K+ +N                               L++ 
Sbjct: 152 NKIDLKILKLLIDKGVDINAKNRVNY------------------------------LLSY 181

Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
           G  IN+K+    +PLH A        VK LL  + G+   N  +  G TPLHIA
Sbjct: 182 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLL--DLGAN-PNLVNKYGDTPLHIA 232

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 75.0 bits (184), Expect = 3e-14
 Identities = 85/375 (22%), Positives = 141/375 (37%), Gaps = 102/375 (27%)

Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 195
           E I  ++   I++   E   PL  A+  GD K VEL +K GA I+     +  P+  A  
Sbjct: 18  EKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIK 77

Query: 196 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
            GA DI+          KL+  N  D   + P+ C       D+++ ++D G D+N+ D 
Sbjct: 78  IGAHDII----------KLLIDNGVDTS-ILPIPCIEK----DMIKTILDCGIDVNIKDA 122

Query: 256 EKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQG 315
           E ++                            LH A +   +  + +L +Y         
Sbjct: 123 ELKT---------------------------FLHYAIKKGDLESIKMLFEYG-------- 147

Query: 316 GEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
                              A + ++D          NG YPIH A K+     +++ L+ 
Sbjct: 148 -------------------ADVNIED---------DNGCYPIHIAIKHNFFDIIKLLLEK 179

Query: 376 GESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 435
           G                 G  PLH+A   GD+  ++L +  G  I  +  +  TP+H A 
Sbjct: 180 GAYANVKDN--------NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA- 230

Query: 436 SQGALDIVRLMFNLQPSEKLV---CLNSTDAQKMTPLHCAAMFDRC--DVVQYLIDEGAD 490
                    ++ N    E L+    +N  D    TPLH A     C  D++  L+   AD
Sbjct: 231 ---------IIHNRSAIELLINNASINDQDIDGSTPLHHAINPP-CDIDIIDILLYHKAD 280

Query: 491 LNVLDKEKRSPLLLA 505
           +++ D +  +P+  A
Sbjct: 281 ISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 72.0 bits (176), Expect = 4e-13
 Identities = 91/396 (22%), Positives = 164/396 (41%), Gaps = 98/396 (24%)

Query: 115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK 174
           PIH AA+  ++K + + L +G  +      +I+L   +    L  AV   +   ++  + 
Sbjct: 181 PIHYAAERGNAKMVNLLLSYGADV-----NIIAL---DDLSVLECAVDSKNIDTIKAIID 232

Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 234
           + + I+     L      A     L+   L+++   S     +NS D  K TPLH A+  
Sbjct: 233 NRSNINKNDLSLLK----AIRNEDLETSLLLYDAGFS-----VNSIDDCKNTPLHHASQA 283

Query: 235 DRCD-VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATE 293
                +V  L++ GAD+N  + +  +PL L A + G+ T  + T I+         L  +
Sbjct: 284 PSLSRLVPKLLERGADVNAKNIKGETPLYLMA-KNGYDTENIRTLIM---------LGAD 333

Query: 294 LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNG 353
           +N    L I                  T LH A+  D ++   I + + GA++    +  
Sbjct: 334 VNAADRLYI------------------TPLHQASTLDRNKDIVITLLELGANVN---ARD 372

Query: 354 YY---PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGD-FKA 409
           Y    PIH AA   +   +   L +G  I    +++ +         LH A+ G + + +
Sbjct: 373 YCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTA--------LHFALCGTNPYMS 424

Query: 410 VELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL 469
           V+  +  GA ++++  DLSTP+H AC +          N +                   
Sbjct: 425 VKTLIDRGANVNSKNKDLSTPLHYACKK----------NCKL------------------ 456

Query: 470 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
                    DV++ L+D GAD+N ++ + + PLL+A
Sbjct: 457 ---------DVIEMLLDNGADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.9 bits (161), Expect = 5e-13
 Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 22/145 (15%)

Query: 27  ILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 86
             +   +  LHLA     + ++ +LL+    ++       GRT LH+AA     E  ++L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK--DNDGRTPLHLAAKNGHLEIVKLL 59

Query: 87  VSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 146
           +            + GA +     +G  P+H AA+N +   +++ L+ G          +
Sbjct: 60  L------------EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD--------V 99

Query: 147 SLFDAEGNLPLHSAVHGGDFKAVEL 171
           +  D +G  PLH A   G  + V+L
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKL 124

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 191 HLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL 250
           HLA   G L++V+L+            +       T LH AA     ++V+ L++ GAD+
Sbjct: 2   HLAAKNGNLELVKLLLEKGA-------DVNLGDTDTALHLAARNGNLEIVKLLLEHGADV 54

Query: 251 NVLDKEKRSPLLLAASRG 268
           N  DK+  + L LAA  G
Sbjct: 55  NAKDKDGNTALHLAARNG 72

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 31/113 (27%)

Query: 228 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAV 287
           LH AA     ++V+ L+++GAD+N+ D +                               
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD-----------------------------TA 31

Query: 288 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
           LHLA     + I+ +LL++    D+    + G TALH+AA     E  ++L++
Sbjct: 32  LHLAARNGNLEIVKLLLEHG--ADVNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 24/232 (10%)

Query: 155 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA-----LDIVRLMFNLQ 209
           LPL+ A    +   V++ L +GA I++   + STP+H   +         +IV+L+    
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG 96

Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDV--VQYLIDEGADLNVLDKEKRSPLLLAASR 267
                  +N+ D   +TPL  A          V+YL+D GA++N+ + +  + L L    
Sbjct: 97  -----ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES 151

Query: 268 GGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 327
                  +   I               N+V  LL        + I     +G T LH A 
Sbjct: 152 NKIDLKILKLLIDKGVD------INAKNRVNYLLSY-----GVPINIKDVYGFTPLHYAV 200

Query: 328 IYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 379
             +  E  + L+ D GA+       G  P+H A  N + +  ++ L  G SI
Sbjct: 201 YNNNPEFVKYLL-DLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 65.4 bits (160), Expect = 4e-11
 Identities = 79/321 (24%), Positives = 120/321 (37%), Gaps = 63/321 (19%)

Query: 153 GNLPLHSAVHGG---DFKAVELCLKSGAKISTQQFDLSTPVHL-ACSQGALDIVRLMFNL 208
           G  PLH  +H         V L L++GA ++  +    TP+HL   +   LD+++L+   
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLI-- 104

Query: 209 QPSEKLVCLNSTDAQKMTPLH--CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL--LLA 264
              +    +N+ D    TPLH   +       V++ L+ +GAD+N LD    +PL  LL 
Sbjct: 105 ---KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLL- 160

Query: 265 ASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLIL----LQYKDMIDILQGGEHGR 320
                 K+   N  +L                   LLI     +   D           R
Sbjct: 161 ------KSRNANVELLR------------------LLIDAGADVYAVDDR--------FR 188

Query: 321 TALHIAAIYDFDECARILVKDFGASLKRACSN--GYYPIHDAAKNASSKT--MEVFLQFG 376
           + LH      F   ARI+ +   A    A ++  G  P+H  A  +S K   +   L  G
Sbjct: 189 SLLHHHLQS-FKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAG 247

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
            SI        +     G  PLH A    + +A    +  GA I+    D +TP+ L   
Sbjct: 248 ISI--------NARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVR 299

Query: 437 QGALDIVRLMFNLQPSEKLVC 457
                 VR      PS + V 
Sbjct: 300 NNNGRAVRAALAKNPSAETVA 320

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.0 bits (158), Expect = 5e-11
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 22/213 (10%)

Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           LH A+  GD +++++  + GA ++ +  +   P+H+A      DI++L+      EK   
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-----EKGAY 182

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
            N  D    +PLH AA +     ++ LID G  +    K   +PL  A      ++ + L
Sbjct: 183 ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHN--RSAIEL 240

Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
           + N A+I  +DI+    LH        H      ++  +   + L+   A I++K+N  E
Sbjct: 241 LINNASINDQDIDGSTPLH--------HAINPPCDIDII---DILLYHKADISIKDNKGE 289

Query: 578 SPLHLAARY-GRYNTVKKLLSSERGSFIINESD 609
           +P+  A +Y  +   +K ++++   + +I E+D
Sbjct: 290 NPIDTAFKYINKDPVIKDIIAN---AVLIKEAD 319

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 64.2 bits (156), Expect = 8e-11
 Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
           +G  PI  A K   S+ +++ ++ G        ++ S         LH AV  GD KAVE
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES--------ELHDAVEEGDVKAVE 85

Query: 412 LCLKSGAKISTQQF-DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 470
             L  G       + D  TP+HLA     LDI++L+        +    +TD  K +PLH
Sbjct: 86  ELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI---PNTD--KFSPLH 140

Query: 471 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
            A M      ++ LID  A L++ D    +PL++A ++G       L+ + ANI
Sbjct: 141 LAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 14/105 (13%)

Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
           LH AA     ++V+ L+++GAD+N+   +  + L LAA  G  + V  L+ + A++  KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL--GDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 529 INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN 573
            +    LHL   NG         E+  +     L+  GA INLK+
Sbjct: 59  KDGNTALHLAARNG-------NLEIVKL-----LLEHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 24/173 (13%)

Query: 97  MVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLP 156
           M+ ++GA +     NG YPIH A K+     +++ L+ G           ++ D  G  P
Sbjct: 142 MLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG--------AYANVKDNNGESP 193

Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV- 215
           LH+A   GD+  ++L +  G  I  +  +  TP+H A          ++ N    E L+ 
Sbjct: 194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA----------IIHNRSAIELLIN 243

Query: 216 --CLNSTDAQKMTPLHCAAMFDRC--DVVQYLIDEGADLNVLDKEKRSPLLLA 264
              +N  D    TPLH A     C  D++  L+   AD+++ D +  +P+  A
Sbjct: 244 NASINDQDIDGSTPLHHAINPP-CDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 21/212 (9%)

Query: 410 VELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL 469
           ++  L  G  ++ +  +L T +H A  +G L+ ++++F          +N  D     P+
Sbjct: 107 IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-----VNIEDDNGCYPI 161

Query: 470 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 529
           H A   +  D+++ L+++GA  NV D    SPL  AA  G +  +  L+ +  +I+ K  
Sbjct: 162 HIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK 221

Query: 530 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRY 589
           N    LH  +++    I             E LIN  A IN ++    +PLH A      
Sbjct: 222 NGFTPLHNAIIHNRSAI-------------ELLIN-NASINDQDIDGSTPLHHAINPPCD 267

Query: 590 NTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
             +  +L   +    I ++ GE   P+  A K
Sbjct: 268 IDIIDILLYHKADISIKDNKGE--NPIDTAFK 297

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 60.2 bits (145), Expect = 4e-10
 Identities = 44/174 (25%), Positives = 63/174 (36%), Gaps = 40/174 (22%)

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
           L + D     PLH AA      +V+ L+  GAD+N  D +  +PL LAA  G        
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNG-------- 117

Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
                           +  LL+  G                           NL++    
Sbjct: 118 --------NPPEGNIEVAKLLLEAGA---------------------DLDVNNLRDEDGN 148

Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
           +PLH AA  G  + V+ LL  E G+   N  +  G+T L  A+K G    V + 
Sbjct: 149 TPLHWAALNGDADIVELLL--EAGAD-PNSRNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 60.8 bits (147), Expect = 1e-09
 Identities = 93/401 (23%), Positives = 163/401 (40%), Gaps = 67/401 (16%)

Query: 235 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATEL 294
           D   + + L++ GAD+N  D    +P+  AA RG       N +++N     +L    ++
Sbjct: 156 DELLIAEMLLEGGADVNAKDIYCITPIHYAAERG-------NAKMVN----LLLSYGADV 204

Query: 295 NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY 354
           N + +        D + +L+     +    I AI D     R  +     SL +A  N  
Sbjct: 205 NIIAL--------DDLSVLECAVDSKNIDTIKAIID----NRSNINKNDLSLLKAIRN-- 250

Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF-KAVELC 413
                       + +E  L   ++ G S    ++      N PLH A       + V   
Sbjct: 251 ------------EDLETSLLLYDA-GFS----VNSIDDCKNTPLHHASQAPSLSRLVPKL 293

Query: 414 LKSGAKISTQQFDLSTPVHLACSQG-ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCA 472
           L+ GA ++ +     TP++L    G   + +R +  L        +N+ D   +TPLH A
Sbjct: 294 LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-----VNAADRLYITPLHQA 348

Query: 473 AMFDRC-DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           +  DR  D+V  L++ GA++N  D   ++P+  AA R     + TL+   A+I       
Sbjct: 349 STLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKI 408

Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYG-RYN 590
              LH  +     ++             + LI+ GA +N KN    +PLH A +   + +
Sbjct: 409 GTALHFALCGTNPYMSV-----------KTLIDRGANVNSKNKDLSTPLHYACKKNCKLD 457

Query: 591 TVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
            ++ LL +      +N  + +   PL IA    +H  V+I 
Sbjct: 458 VIEMLLDNGAD---VNAINIQNQYPLLIAL--EYHGIVNIL 493

Length = 682

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
            +G +    +N  +  LHLA +   + I+ +LL+    ++     + G T LH+AA    
Sbjct: 28  ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR--DKDGNTPLHLAARNGN 85

Query: 80  DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 132
            +  ++L+        +  +D          +G  P+H AAKN   + +++ L
Sbjct: 86  LDVVKLLLK---HGADVNARD---------KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 9e-09
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 116 IHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKS 175
           +H AAKN + + +++ L+ G  +               +  LH A   G+ + V+L L+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT----------DTALHLAARNGNLEIVKLLLEH 50

Query: 176 GAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
           GA ++ +  D +T +HLA   G L+IV+L+  
Sbjct: 51  GADVNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 9e-09
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 357 IHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKS 416
           +H AAKN + + +++ L+ G  +               +  LH A   G+ + V+L L+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT----------DTALHLAARNGNLEIVKLLLEH 50

Query: 417 GAKISTQQFDLSTPVHLACSQGALDIVRLMFN 448
           GA ++ +  D +T +HLA   G L+IV+L+  
Sbjct: 51  GADVNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
           L+  GA +NL +    + LHLAAR G    VK LL        +N  D +G T LH+A++
Sbjct: 16  LLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHG---ADVNAKDKDGNTALHLAAR 70

Query: 622 EG 623
            G
Sbjct: 71  NG 72

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 75/307 (24%), Positives = 122/307 (39%), Gaps = 52/307 (16%)

Query: 311 DILQGGEHGRTALHIAAIYDFDECARI--LVKDFGASLKRACSNGYYPIHDAAKNASS-K 367
           D+   GE+G+T LH+   Y  ++   I  L+ + GA +      G+ P+H    NA++  
Sbjct: 39  DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD 98

Query: 368 TMEVFLQFG----ESIGCSREEMISLFAAEGNLPLHSAVHGG--DFKAVELCLKSGAKIS 421
            +++ ++ G                     G  PLH  + G   + K + L L+ GA ++
Sbjct: 99  VIKLLIKAGADVNAKDKV------------GRTPLHVYLSGFNINPKVIRLLLRKGADVN 146

Query: 422 TQQFDLSTPVH-LACSQGA-LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF--DR 477
                  TP+  L  S+ A ++++RL+      +    + + D +  + LH        R
Sbjct: 147 ALDLYGMTPLAVLLKSRNANVELLRLLI-----DAGADVYAVDDRFRSLLHHHLQSFKPR 201

Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN--KANILLKDINRRNIL 535
             +V+ LI  G D    D    +PL   A+    K   +LV     A I    IN RN  
Sbjct: 202 ARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKR--SLVLPLLIAGI---SINARNRY 256

Query: 536 HLLVLNGGGHIKEFAEEVAAVFLG----ENLINLGACINLKNNSNESPLHLAARYGRYNT 591
               L+            AAVF        LI LGA IN  ++   +PL L  R      
Sbjct: 257 GQTPLH-----------YAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRA 305

Query: 592 VKKLLSS 598
           V+  L+ 
Sbjct: 306 VRAALAK 312

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 47/306 (15%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
            S       PLH A      DVV+ L+  G ++N  D    +PL +              
Sbjct: 31  TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICK----------- 79

Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMID---------ILQGGEHGRTALHIAAI 328
                 K  +  +   +NK  +   L+  KD  +         IL         + +  I
Sbjct: 80  ---EPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYI 136

Query: 329 YDFDECARI------LVKDFGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQFGESIGC 381
               +   I      L+  +GA +     + G   +H A +N   +  E+ L +G ++  
Sbjct: 137 DKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-- 194

Query: 382 SREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ-GAL 440
                 ++     N PLH AV   +   V + L++GA    +    +TP+H++       
Sbjct: 195 ------NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDY 248

Query: 441 DIVRLMFNLQPSEKLVCLNSTDA-QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
           DI++L+      E  V +N+      +T LH +   +R   ++ L++ GAD+N L+  K 
Sbjct: 249 DILKLLL-----EHGVDVNAKSYILGLTALHSSIKSER--KLKLLLEYGADINSLNSYKL 301

Query: 500 SPLLLA 505
           +PL  A
Sbjct: 302 TPLSSA 307

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 24/162 (14%)

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVN 276
           L + D     PLH AA      +V+ L+  GAD+N  D +  +PL LAA           
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAA----------- 114

Query: 277 TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL-QGGEHGRTALHIAAIYDFDECA 335
              LN           +L        LL+    +D+     E G T LH AA+    +  
Sbjct: 115 ---LNGNPPEGNIEVAKL--------LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 336 RILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
            +L++  GA      S G   +  AAKN   + +++ L  G 
Sbjct: 164 ELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGL 204

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 55.7 bits (134), Expect = 4e-08
 Identities = 57/255 (22%), Positives = 101/255 (39%), Gaps = 42/255 (16%)

Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS----QGALDIVRL------ 445
           +PLH AV   +   V+  L  G  ++       TP+H+ C      G  +++R       
Sbjct: 39  IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV 98

Query: 446 ---------MFNLQPSE--KLVCLNSTDAQKMTPLHCAAMFDRCD-----VVQYLIDEGA 489
                     FN +  E  K++  N     +   L       + D     + + L+  GA
Sbjct: 99  FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGA 158

Query: 490 DLNVLDKEK-RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
           D+N+ D+ K  + L  A      +    L+   AN+ + D    + LH         +K 
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLH-------HAVKH 211

Query: 549 FAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGR-YNTVKKLLSSERGSFIINE 607
           + + +        L+  GA  + ++    +PLH++  Y + Y+ +K LL  E G  +  +
Sbjct: 212 YNKPIV-----HILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLL--EHGVDVNAK 264

Query: 608 SDGEGLTPLHIASKE 622
           S   GLT LH + K 
Sbjct: 265 SYILGLTALHSSIKS 279

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.5 bits (133), Expect = 7e-08
 Identities = 87/379 (22%), Positives = 156/379 (41%), Gaps = 62/379 (16%)

Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
           E    +N+ D   +TP+H AA      +V  L+  GAD+N++  +  S L  A       
Sbjct: 166 EGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA------- 218

Query: 272 TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 331
              V+++ ++  K A++   + +NK  + L                       + AI + 
Sbjct: 219 ---VDSKNIDTIK-AIIDNRSNINKNDLSL-----------------------LKAIRNE 251

Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNAS-SKTMEVFLQFGESIGCSREEMISLF 390
           D    +L+ D G S+         P+H A++  S S+ +   L+ G  +           
Sbjct: 252 DLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN------- 304

Query: 391 AAEGNLPLH-SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS-QGALDIVRLMFN 448
             +G  PL+  A +G D + +   +  GA ++       TP+H A +     DIV  +  
Sbjct: 305 -IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLE 363

Query: 449 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA-AS 507
           L  +     +N+ D    TP+H AA+ +   ++  L+D GAD+  L ++  + L  A   
Sbjct: 364 LGAN-----VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCG 418

Query: 508 RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGA 567
              + +V TL+   AN+  K+ +    LH                   + + E L++ GA
Sbjct: 419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKN-----------CKLDVIEMLLDNGA 467

Query: 568 CINLKNNSNESPLHLAARY 586
            +N  N  N+ PL +A  Y
Sbjct: 468 DVNAINIQNQYPLLIALEY 486

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.0 bits (132), Expect = 7e-08
 Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 25/187 (13%)

Query: 356 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK 415
            +HDA +    K +E  L  G+           +F  +G  PLH A        ++L + 
Sbjct: 71  ELHDAVEEGDVKAVEELLDLGKFAD-------DVFYKDGMTPLHLATILKKLDIMKLLIA 123

Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 475
            GA       D  +P+HLA   G +  + L+ + +      CL+  D    TPL  A   
Sbjct: 124 RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK-----ACLDIEDCCGCTPLIIAMAK 178

Query: 476 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAA-------------SRGGWKTVLTLVRNKA 522
               + + L+D GA+++   K      L  A              RG    ++ ++  + 
Sbjct: 179 GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEE 238

Query: 523 NILLKDI 529
             +L  I
Sbjct: 239 CTILDMI 245

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 21/199 (10%)

Query: 441 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 500
           +I +L+ +      +   +  +    T LH A       + + L+  GA++N+ DK   S
Sbjct: 148 EITKLLLSYGADINMKDRHKGN----TALHYATENKDQRLTELLLSYGANVNIPDKTNNS 203

Query: 501 PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGE 560
           PL  A        V  L+ N A+   +D      LH+ V    G+ K++  ++  +    
Sbjct: 204 PLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV----GYCKDY--DILKL---- 253

Query: 561 NLINLGACINLKNN-SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
            L+  G  +N K+     + LH + +  R     KLL        IN  +   LTPL  A
Sbjct: 254 -LLEHGVDVNAKSYILGLTALHSSIKSER---KLKLLLEYGAD--INSLNSYKLTPLSSA 307

Query: 620 SKEGFHYSVSIFQVTYVWC 638
            K+    ++    ++ +  
Sbjct: 308 VKQYLCINIGRILISNICL 326

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)

Query: 101 FGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHS 159
           +GA +     + G   +H A +N   +  E+ L +G ++        ++ D   N PLH 
Sbjct: 156 YGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV--------NIPDKTNNSPLHH 207

Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ-GALDIVRLMFNLQPSEKLVCLN 218
           AV   +   V + L++GA    +    +TP+H++       DI++L+      E  V +N
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLL-----EHGVDVN 262

Query: 219 STDA-QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
           +      +T LH +   +R   ++ L++ GAD+N L+  K +PL  A
Sbjct: 263 AKSYILGLTALHSSIKSER--KLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 54/244 (22%)

Query: 59  DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD 118
           D+   GE+G+T LH+   Y  ++   I+         +++ + GA +      G+ P+H 
Sbjct: 39  DVNFRGEYGKTPLHLYLHYSSEKVKDIVR--------LLL-EAGADVNAPERCGFTPLHL 89

Query: 119 AAKNASS-KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG--DFKAVELCLKS 175
              NA++   +++ ++ G  +     +     D  G  PLH  + G   + K + L L+ 
Sbjct: 90  YLYNATTLDVIKLLIKAGADV---NAK-----DKVGRTPLHVYLSGFNINPKVIRLLLRK 141

Query: 176 GAKISTQQFDLSTPVH-LACSQGA-LDIVRLMF----------------------NLQPS 211
           GA ++       TP+  L  S+ A ++++RL+                       + +P 
Sbjct: 142 GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPR 201

Query: 212 EKLV--------CLNSTDAQKMTPLHCAAMFDRCD--VVQYLIDEGADLNVLDKEKRSPL 261
            ++V           +TD    TPLH  A    C   +V  L+  G  +N  ++  ++PL
Sbjct: 202 ARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPL 261

Query: 262 LLAA 265
             AA
Sbjct: 262 HYAA 265

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
           LN+TD    TPLH AA +   ++VQ+L+  G DLN+ D +  + L LA
Sbjct: 9   LNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
           LN+TD    TPLH AA +   ++VQ+L+  G DLN+ D +  + L LA
Sbjct: 9   LNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 12/151 (7%)

Query: 115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK 174
            +HDA +    K +E  L  G+           +F  +G  PLH A        ++L + 
Sbjct: 71  ELHDAVEEGDVKAVEELLDLGKFAD-------DVFYKDGMTPLHLATILKKLDIMKLLIA 123

Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 234
            GA       D  +P+HLA   G +  + L+ + +      CL+  D    TPL  A   
Sbjct: 124 RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK-----ACLDIEDCCGCTPLIIAMAK 178

Query: 235 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
               + + L+D GA+++   K      L  A
Sbjct: 179 GDIAICKMLLDSGANIDYFGKNGCVAALCYA 209

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 16/103 (15%)

Query: 36  LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
           LHLA +   + ++ +LL+    +++        TALH+AA     E  ++L+        
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLL-------- 48

Query: 96  IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 138
               + GA +     +G   +H AA+N + + +++ L+ G  I
Sbjct: 49  ----EHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
           T +H A   G L++V+ +      EK V +N TD    T LH AA     +V++ L+
Sbjct: 3   TALHKAAISGRLELVKYLL-----EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           T +H A   G L++V+ +      EK V +N TD    T LH AA     +V++ L+
Sbjct: 3   TALHKAAISGRLELVKYLL-----EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 26 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI 85
           +        LHLA     + I+ +LL++    D+    + G TALH+AA     E  ++
Sbjct: 22 DVNLGDTDTALHLAARNGNLEIVKLLLEHG--ADVNAKDKDGNTALHLAARNGNLEIVKL 79

Query: 86 LVSEQPECD 94
          L+    + +
Sbjct: 80 LLEHGADIN 88

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 43/192 (22%)

Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
            + PL+ A      DVV+ L+D GAD+N   K   +PL   ++    K  LT V+    +
Sbjct: 35  PVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNI---KYNLTDVKEIVKL 91

Query: 525 LLK---DINRRN-----ILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
           LL+   ++N  +      L   +                  + E L++ GA +N+KN+  
Sbjct: 92  LLEYGANVNAPDNNGITPLLYAISKKSNSYS----------IVEYLLDNGANVNIKNSDG 141

Query: 577 ESPLHLAARYGRYNT--VKKLLSSERGSFI---------------INESDGEGLTPLHIA 619
           E+ LHL     + +   +K L+   +G  I               IN  D  G TPLH A
Sbjct: 142 ENLLHLYLESNKIDLKILKLLID--KGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYA 199

Query: 620 SKEGFHYSVSIF 631
               ++ +    
Sbjct: 200 V---YNNNPEFV 208

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 11/101 (10%)

Query: 323 LHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCS 382
           LH+AA     E  ++L+ + GA +     +    +H AA+N + + +++ L+ G  +   
Sbjct: 1   LHLAAKNGNLELVKLLL-EKGADVNL--GDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 423
            ++        GN  LH A   G+ + V+L L+ GA I+ +
Sbjct: 58  DKD--------GNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 61/283 (21%), Positives = 111/283 (39%), Gaps = 44/283 (15%)

Query: 258 RSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGE 317
           +S ++   +                K    L+LA E   + ++ ILL   +  DI    +
Sbjct: 9   KSRIIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILL--DNGADINSSTK 66

Query: 318 HGRTALHIAAIYDFD-----ECARILVKDFGASLKRACSNGYYPIHDAA--KNASSKTME 370
           +  T LH  +   ++     E  ++L++ +GA++    +NG  P+  A   K+ S   +E
Sbjct: 67  NNSTPLHYLSNIKYNLTDVKEIVKLLLE-YGANVNAPDNNGITPLLYAISKKSNSYSIVE 125

Query: 371 VFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG--DFKAVELCLKSGAKISTQQFDLS 428
             L  G ++     +  +L        LH  +     D K ++L +  G  I+       
Sbjct: 126 YLLDNGANVNIKNSDGENL--------LHLYLESNKIDLKILKLLIDKGVDIN------- 170

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
                     A + V  +         V +N  D    TPLH A   +  + V+YL+D G
Sbjct: 171 ----------AKNRVNYLL-----SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG 215

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           A+ N+++K   +PL +A      +    L+ N  +I  K I  
Sbjct: 216 ANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI--KTIIE 256

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.8 bits (118), Expect = 1e-06
 Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 12/193 (6%)

Query: 279 ILNNKKQAVLHLATELNKVPILLILLQYK-DMIDILQGGEHGRTALHIAAIYDFDECARI 337
              + K+  L+L   L     L  LL        +      GR  LH AA    D+  ++
Sbjct: 32  SNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKL 91

Query: 338 LVKDFGASLKRACSNGYYPIHDAAKNASSK-----TMEVFLQFGESIGCSREEMISLFAA 392
           L+   GA +    ++G  P+H AA N +         ++ L+ G  +  +          
Sbjct: 92  LL-ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD-----E 145

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           +GN PLH A   GD   VEL L++GA  +++     T +  A   G +++V+L+ +    
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Query: 453 EKLVCLNSTDAQK 465
             L+  N      
Sbjct: 206 LSLLKFNLEGVAN 218

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
            T LH AA+  R ++V+YL+++G D+N  D++  + L +AA  G
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENG 45

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
            T LH AA+  R ++V+YL+++G D+N  D++  + L +AA  G
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENG 45

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 22/112 (19%)

Query: 71  LHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEV 130
           LH+AA     E  ++L+ +  + +                +    +H AA+N + + +++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL--------------GDTDTALHLAARNGNLEIVKL 46

Query: 131 FLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 182
            L+ G  +           D +GN  LH A   G+ + V+L L+ GA I+ +
Sbjct: 47  LLEHGADVNAK--------DKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 4/136 (2%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           +G  P+  A+   D +A++L +K GA    +  D+ + +H A  +G +  V  + +L   
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
              V         MTPLH A +  + D+++ LI  GAD ++ + +K SPL LA   G  K
Sbjct: 94  ADDVFYK----DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149

Query: 513 TVLTLVRNKANILLKD 528
            +  L+ +KA + ++D
Sbjct: 150 GIELLIDHKACLDIED 165

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 58/259 (22%), Positives = 100/259 (38%), Gaps = 38/259 (14%)

Query: 155 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS----QGALDIVRL------ 204
           +PLH AV   +   V+  L  G  ++       TP+H+ C      G  +++R       
Sbjct: 39  IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV 98

Query: 205 ---------MFNLQPSE--KLVCLNSTDAQKMTPLHCAAMFDRCD-----VVQYLIDEGA 248
                     FN +  E  K++  N     +   L       + D     + + L+  GA
Sbjct: 99  FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGA 158

Query: 249 DLNVLDKEK-RSPLLLAASRGGWK------TNGVNTRILNNKKQAVLHLATELNKVPILL 301
           D+N+ D+ K  + L  A      +      + G N  I +    + LH A +    PI+ 
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVH 218

Query: 302 ILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACS-NGYYPIHDA 360
           ILL+     D     + G T LHI+  Y  D     L+ + G  +       G   +H +
Sbjct: 219 ILLENGASTDARD--KCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS 276

Query: 361 AKNASSKTMEVFLQFGESI 379
            K  S + +++ L++G  I
Sbjct: 277 IK--SERKLKLLLEYGADI 293

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 75/370 (20%), Positives = 128/370 (34%), Gaps = 89/370 (24%)

Query: 165 DFKAVELCLKSGAKISTQQFDLSTPVH--LACSQGA-LDIVRLMFNLQPSEKLVCLNSTD 221
             + V   L +GA ++ +     TP+H  L  S     DIVRL+      E    +N+ +
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLL-----EAGADVNAPE 80

Query: 222 AQKMTPLHCAAMFD-RCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRIL 280
               TPLH         DV++ LI  GAD+N  DK  R+PL +                 
Sbjct: 81  RCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV----------------- 123

Query: 281 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
                   +L+       ++ +LL+     D+     +G T L +            L+K
Sbjct: 124 --------YLSGFNINPKVIRLLLRKG--ADVNALDLYGMTPLAV------------LLK 161

Query: 341 DFGAS---LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP 397
              A+   L+     G      A  +     +   LQ  +     R  ++      G  P
Sbjct: 162 SRNANVELLRLLIDAGADVY--AVDDRFRSLLHHHLQSFKP----RARIVRELIRAGCDP 215

Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA---CSQGALDIVRLMFNLQPSEK 454
             + + G                       +TP+H      S     ++ L+        
Sbjct: 216 AATDMLG-----------------------NTPLHSMATGSSCKRSLVLPLL------IA 246

Query: 455 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
            + +N+ +    TPLH AA+F+     + LI  GAD+N +  +  +PL L       + V
Sbjct: 247 GISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAV 306

Query: 515 LTLVRNKANI 524
              +    + 
Sbjct: 307 RAALAKNPSA 316

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 25/219 (11%)

Query: 14  SRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMID---ILQGGEHGRTA 70
             L+ +   + +  L+N     L+L  EL  +P   +      +I    +      GR  
Sbjct: 17  DLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLP 76

Query: 71  LHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK---- 126
           LH AA    D+  ++L+              GA +    ++G  P+H AA N +      
Sbjct: 77  LHSAASKGDDKIVKLLL------------ASGADVNAKDADGDTPLHLAALNGNPPEGNI 124

Query: 127 -TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 185
              ++ L+ G     +  ++ +L D +GN PLH A   GD   VEL L++GA  +++   
Sbjct: 125 EVAKLLLEAG-----ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179

Query: 186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQK 224
             T +  A   G +++V+L+ +      L+  N      
Sbjct: 180 GVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVAN 218

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
            TPLH AA     +VV+ L++ GAD+N  DK
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.9 bits (102), Expect = 6e-06
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
            TPLH AA     +VV+ L++ GAD+N  DK
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 56/262 (21%), Positives = 102/262 (38%), Gaps = 43/262 (16%)

Query: 8   SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 67
              K K+                K    L+LA E   + ++ ILL   +  DI    ++ 
Sbjct: 11  RIIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILL--DNGADINSSTKNN 68

Query: 68  RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAA--KNASS 125
            T LH  +   ++       ++  E   ++++ +GA++    +NG  P+  A   K+ S 
Sbjct: 69  STPLHYLSNIKYNL------TDVKEIVKLLLE-YGANVNAPDNNGITPLLYAISKKSNSY 121

Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG--DFKAVELCLKSGAKISTQQ 183
             +E  L  G ++     +  +L        LH  +     D K ++L +  G  I+   
Sbjct: 122 SIVEYLLDNGANVNIKNSDGENL--------LHLYLESNKIDLKILKLLIDKGVDIN--- 170

Query: 184 FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
                         A + V  +         V +N  D    TPLH A   +  + V+YL
Sbjct: 171 --------------AKNRVNYLL-----SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYL 211

Query: 244 IDEGADLNVLDKEKRSPLLLAA 265
           +D GA+ N+++K   +PL +A 
Sbjct: 212 LDLGANPNLVNKYGDTPLHIAI 233

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 164 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM--FNLQPSEKLVCLNSTD 221
           GD     + L  GA  + + +D  TP+H+AC+ G + +VR++  F   P+         D
Sbjct: 93  GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-------LLD 145

Query: 222 AQKMTPLHCAAMFDRCDVVQYL 243
               TPL  A      +VVQ L
Sbjct: 146 KDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM--FNLQPSEKLVCLNSTD 462
           GD     + L  GA  + + +D  TP+H+AC+ G + +VR++  F   P+         D
Sbjct: 93  GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-------LLD 145

Query: 463 AQKMTPLHCAAMFDRCDVVQYL 484
               TPL  A      +VVQ L
Sbjct: 146 KDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 30/268 (11%)

Query: 1   MGLLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDI 60
           + LL    +   ++ L+   +G +   +++ K   LH A++   +  L+  L  +   D+
Sbjct: 242 LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG-ADV 300

Query: 61  LQGGEHGRTALHIAAIYDFD-ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDA 119
                 G T L++ A   +D E  R L+              GA +  A      P+H A
Sbjct: 301 NAKNIKGETPLYLMAKNGYDTENIRTLIM------------LGADVNAADRLYITPLHQA 348

Query: 120 AKNASSK-TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
           +    +K  +   L+ G ++           D     P+H A    +   +   L  GA 
Sbjct: 349 STLDRNKDIVITLLELGANVNAR--------DYCDKTPIHYAAVRNNVVIINTLLDYGAD 400

Query: 179 ISTQQFDLSTPVHLA-CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD-R 236
           I      + T +H A C       V+ +      ++   +NS +    TPLH A   + +
Sbjct: 401 IEALSQKIGTALHFALCGTNPYMSVKTLI-----DRGANVNSKNKDLSTPLHYACKKNCK 455

Query: 237 CDVVQYLIDEGADLNVLDKEKRSPLLLA 264
            DV++ L+D GAD+N ++ + + PLL+A
Sbjct: 456 LDVIEMLLDNGADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 34/202 (16%)

Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
           +G  P+  A+   D +A++L +K GA    +  D+ + +H A  +G +  V  + +L   
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
              V         MTPLH A +  + D+++ LI  GAD ++ + +K SP           
Sbjct: 94  ADDVFYK----DGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP----------- 138

Query: 272 TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 331
                           LHLA  +  +  + +L+ +K  +DI      G T L IA     
Sbjct: 139 ----------------LHLAVMMGDIKGIELLIDHKACLDIEDC--CGCTPLIIAMAKGD 180

Query: 332 DECARILVKDFGASLKRACSNG 353
               ++L+ D GA++     NG
Sbjct: 181 IAICKMLL-DSGANIDYFGKNG 201

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 25/150 (16%)

Query: 303 LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACS------NGYYP 356
           LL+ K   DI  G   GRT LHIAA   +++C  +L       LK AC+      NG   
Sbjct: 544 LLKAKLDPDI--GDSKGRTPLHIAASKGYEDCVLVL-------LKHACNVHIRDANGNTA 594

Query: 357 IHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKS 416
           + +A      K   +   F           IS   A G+L L +A    D  A++  LK 
Sbjct: 595 LWNAISAKHHKIFRILYHFAS---------ISDPHAAGDL-LCTAAKRNDLTAMKELLKQ 644

Query: 417 GAKISTQQFDLSTPVHLACSQGALDIVRLM 446
           G  + ++    +T + +A ++  +D+VRL+
Sbjct: 645 GLNVDSEDHQGATALQVAMAEDHVDMVRLL 674

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.7 bits (108), Expect = 8e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           N  D    TPLH A       VV+ L++ GAD  +LDK+ ++PL LA   G  + V  L 
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLS 168

Query: 519 R 519
           R
Sbjct: 169 R 169

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
           + LH AA  GR   VK LL        IN +D +G T LHIA++ G +  V
Sbjct: 3   TALHKAAISGRLELVKYLLEK---GVDINRTDEDGNTALHIAAENG-NLEV 49

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 31/172 (18%)

Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
           C+N +  +  TPL  A       +V+  I  GAD+N ++ +   PLL A   G    +  
Sbjct: 27  CINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKL 86

Query: 517 LVRNKAN---ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN 573
           L+ N  +   + +  I +  I                         + +++ G  +N+K+
Sbjct: 87  LIDNGVDTSILPIPCIEKDMI-------------------------KTILDCGIDVNIKD 121

Query: 574 NSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
              ++ LH A + G   ++K L         +N  D  G  P+HIA K  F 
Sbjct: 122 AELKTFLHYAIKKGDLESIKMLFEYGAD---VNIEDDNGCYPIHIAIKHNFF 170

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 562 LINLGAC-INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
           L+  G   +N  + +  +PLHLAA+YG    V+ LL        +N  D +GLT L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD---LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           N  D    TPLH A       VV+ L++ GAD  +LDK+ ++PL LA   G
Sbjct: 109 NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG 159

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 223 QKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
              TPLH AA     +VV+ L+D+GAD+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
              TPLH AA     +VV+ L+D+GAD+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLL 596
           L+  G  IN  +    + LH+AA  G    +K LL
Sbjct: 20  LLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 153 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
           G   LH A   G  + V+  L+ G  I+    D +T +H+A   G L++++L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
           G   LH A   G  + V+  L+ G  I+    D +T +H+A   G L++++L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 36/161 (22%)

Query: 51  LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS 110
           LL+ K   DI  G   GRT LHIAA   +++C  +L                  LK AC+
Sbjct: 544 LLKAKLDPDI--GDSKGRTPLHIAASKGYEDCVLVL------------------LKHACN 583

Query: 111 ------NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG 164
                 NG   + +A      K   +   F           IS   A G+L L +A    
Sbjct: 584 VHIRDANGNTALWNAISAKHHKIFRILYHFAS---------ISDPHAAGDL-LCTAAKRN 633

Query: 165 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
           D  A++  LK G  + ++    +T + +A ++  +D+VRL+
Sbjct: 634 DLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674

Length = 823

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNV 252
            TPLH AA     ++V+ L++ GAD+N 
Sbjct: 3   NTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNV 493
            TPLH AA     ++V+ L++ GAD+N 
Sbjct: 3   NTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 193
           D  GN PLH A   G  + V+  LK G  ++ +  D  T + LA
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 47/230 (20%), Positives = 83/230 (36%), Gaps = 41/230 (17%)

Query: 193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
           A   G LDI R + ++  +      N      ++P+  A  F   + ++ L+  GA  +V
Sbjct: 9   AILFGELDIARRLLDIGINP-----NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV 63

Query: 253 LDKEKRSPLLLAASRGGWK-------TNGVNTRILNNKKQAVLHLATELNKVPILLILLQ 305
              +  S L  A   G  K              +        LHLAT L K+ I+ +L+ 
Sbjct: 64  KYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA 123

Query: 306 YKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSN-----GYYPIHDA 360
                DI    +   + LH+A +    +   +L+        +AC +     G  P+  A
Sbjct: 124 RGADPDIPNTDKF--SPLHLAVMMGDIKGIELLID------HKACLDIEDCCGCTPLIIA 175

Query: 361 AKNASSKTMEVFLQFGESI------GC----------SREEMISLFAAEG 394
                    ++ L  G +I      GC          ++ +++ LF   G
Sbjct: 176 MAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG 225

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 44/248 (17%)

Query: 43  NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFG 102
             + ++ +L++     D+    + GRT LH+   Y         V        ++++  G
Sbjct: 95  TTLDVIKLLIKAG--ADVNAKDKVGRTPLHV---YLSGFNINPKVIR------LLLR-KG 142

Query: 103 ASLKRACSNGYYPIHDAAK--NASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSA 160
           A +      G  P+    K  NA+ + + + +  G  +  +        D      LH  
Sbjct: 143 ADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV-YAV-------DDRFRSLLHH- 193

Query: 161 VHGGDFKA----VELCLKSGAKISTQQFDLSTPVHLA---CSQGALDIVRLMFNLQPSEK 213
            H   FK     V   +++G   +      +TP+H      S     ++ L+        
Sbjct: 194 -HLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL------IA 246

Query: 214 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTN 273
            + +N+ +    TPLH AA+F+     + LI  GAD+N +  +  +PL L          
Sbjct: 247 GISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNN----- 301

Query: 274 GVNTRILN 281
             N R + 
Sbjct: 302 --NGRAVR 307

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 25/193 (12%)

Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
           A   G LDI R + ++  +      N      ++P+  A  F   + ++ L+  GA  +V
Sbjct: 9   AILFGELDIARRLLDIGINP-----NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV 63

Query: 494 LDKEKRSPLLLAASRGGWKTV---LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 550
              +  S L  A   G  K V   L L +   ++  KD      LHL            A
Sbjct: 64  KYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM--TPLHL------------A 109

Query: 551 EEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDG 610
             +  + + + LI  GA  ++ N    SPLHLA   G    ++ L+  +     ++  D 
Sbjct: 110 TILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA---CLDIEDC 166

Query: 611 EGLTPLHIASKEG 623
            G TPL IA  +G
Sbjct: 167 CGCTPLIIAMAKG 179

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
            GN PLH A   G  + V+  LK G  ++ +  D  T + LA
Sbjct: 15  NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	641
KOG4177|consensus	1143		100.0
KOG4177|consensus	1143		100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510|consensus	929		100.0
KOG0510|consensus	929		100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0508|consensus	615		100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4369|consensus	2131		100.0
KOG0509|consensus	600		100.0
KOG0509|consensus	600		100.0
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0502|consensus	296		99.96
KOG4369|consensus	2131		99.96
KOG0502|consensus	296		99.95
KOG0507|consensus	854		99.93
KOG0507|consensus	854		99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0514|consensus	452		99.91
KOG0505|consensus	527		99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
KOG0514|consensus	452		99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
KOG0505|consensus	527		99.88
PHA02741	169	hypothetical protein; Provisional	99.88
KOG0512|consensus	228		99.87
KOG0512|consensus	228		99.87
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG0195|consensus	448		99.82
KOG3676|consensus	782		99.82
KOG0195|consensus	448		99.81
KOG3676|consensus	782		99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.73
KOG4214|consensus	117		99.7
KOG4214|consensus	117		99.67
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
KOG1710|consensus	396		99.51
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.44
KOG1710|consensus	396		99.43
KOG0515|consensus	752		99.42
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.42
KOG0515|consensus	752		99.39
KOG0783|consensus	1267		98.86
KOG0783|consensus	1267		98.84
KOG0506|consensus	622		98.8
PF13606	30	Ank_3: Ankyrin repeat	98.8
KOG0506|consensus	622		98.79
PF13606	30	Ank_3: Ankyrin repeat	98.79
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.7
KOG0522|consensus	560		98.69
KOG0782|consensus	1004		98.69
KOG0818|consensus	669		98.66
KOG0782|consensus	1004		98.66
KOG0818|consensus	669		98.65
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.64
KOG0705|consensus	749		98.59
KOG3609|consensus	822		98.53
KOG0705|consensus	749		98.49
KOG3609|consensus	822		98.47
KOG2384|consensus	223		98.34
KOG0521|consensus	785		98.31
KOG2384|consensus	223		98.3
KOG0522|consensus	560		98.27
KOG0521|consensus	785		98.2
KOG0511|consensus	516		98.14
KOG0511|consensus	516		98.09
KOG0520|consensus	975		97.94
KOG0520|consensus	975		97.83
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.36
KOG2505|consensus	591		97.04
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.93
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.82
KOG2505|consensus	591		96.79
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.73
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.2
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.02
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.23
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.64
PLN03218	1060	maturation of RBCL 1; Provisional	91.6
PLN03218	1060	maturation of RBCL 1; Provisional	82.75

>KOG4177|consensus

Probab=100.00  E-value=4.6e-67  Score=530.42  Aligned_cols=572  Identities=30%  Similarity=0.435  Sum_probs=485.6

Q ss_pred             ccccccCCCceeeeccCCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHH
Q psy8763           4 LSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECA   83 (641)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv   83 (641)
                      .|..+|+.+....++. ...+.+.....+.||+|+|+-+|+.++.++|++.|+  .++....+|.||||.|++.|+.+++
T Consensus        27 ~a~r~~~~~~~~~l~~-~e~~~~~~sk~~~~pl~~aa~~~~~~v~~~ll~~~a--~v~~~~~~~~~plh~a~~~~~a~~v  103 (1143)
T KOG4177|consen   27 IAARNDDTNAAKLLLQ-NEHNADVDSKSGFTPLHIAAHYGNENVAELLLNRGA--IVNATARNGITPLHVASKRGDAEMV  103 (1143)
T ss_pred             HHHhccchhhcccccc-cccccchhcccccCHHHHHhhhhhhhhhhhhhcccc--ccCcccccCccHHHHHHhhcchhHH
Confidence            4667888888888885 444444455599999999999999999999999998  4556678899999999999999999


Q ss_pred             HHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHH----
Q psy8763          84 RILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHS----  159 (641)
Q Consensus        84 ~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~----  159 (641)
                      ++|+..            |+.++..+.+|.||||.|+..|+.+++++|+..++++        ++++.+|.||+++    
T Consensus       104 ~~ll~~------------ga~~~~~~~~~lTpLh~aa~~g~~~~~~~ll~~~a~~--------~~k~~~g~t~l~~a~~~  163 (1143)
T KOG4177|consen  104 KLLLCR------------GAQIDARDRDGLTPLHCAARKGHVQVIELLLQHGAPI--------NIKTKNGLSPLHMAAQV  163 (1143)
T ss_pred             HHHHhc------------cCchhhcccCCCcchhhhcccccHHHHHHHHHccCCC--------cccccCCCCchhhhcch
Confidence            999999            9999999999999999999999999999999999887        4456666665544    


Q ss_pred             -------------------HHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccC
Q psy8763         160 -------------------AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNST  220 (641)
Q Consensus       160 -------------------A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  220 (641)
                                         |...++.+++++|+...++++..+..+.||+|.||..+..+++++++.++++     +...
T Consensus       164 ~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~tpl~~a~~~nri~~~eLll~~gad-----v~a~  238 (1143)
T KOG4177|consen  164 ACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADPNASALNGFTPLHIACKKNRIKVVELLLKHGAD-----VSAK  238 (1143)
T ss_pred             hhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCccccccCCCCchhhhccccccceeeeeeeccCc-----CCcc
Confidence                               4456667777778888888888888888888888888888888888888888     6888


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCccc------ccccccccccCchhHHHHHHhc
Q psy8763         221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATEL  294 (641)
Q Consensus       221 ~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~a~~~  294 (641)
                      +..|.||||.|+..|+.+++.+|+.+|+.++..+..+.||+|.++..+..+.      ++.++........++++.+...
T Consensus       239 d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~  318 (1143)
T KOG4177|consen  239 DESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRL  318 (1143)
T ss_pred             cccCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhccc
Confidence            8888888988888888888888888888888888888888888888887663      6677778888888888888888


Q ss_pred             CChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHh
Q psy8763         295 NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ  374 (641)
Q Consensus       295 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  374 (641)
                      +..+++..+++.+.  .+...+..+.+|+|.++..++.++...+. ..+..-...+..+.+|++.|+..+..+.++.++.
T Consensus       319 g~~~i~~~~l~~~~--~~~aar~~g~t~lHlaa~~~~~~~~~~l~-~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~  395 (1143)
T KOG4177|consen  319 GHEEIVHLLLQAGA--TPNAARTAGYTPLHLAAKEGQVEVAGALL-EHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLE  395 (1143)
T ss_pred             chHHHHHHHhhccC--CccccCcCCcccccHhhhhhhHHHHHHhh-ccccccCcccccCCcchhhhcccCchhHHHhhhh
Confidence            88888888888887  45566677888999988888888777776 6677777777888889999999999999999988


Q ss_pred             ccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCc
Q psy8763         375 FGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG-ALDIVRLMFNLQPSE  453 (641)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~-~~~~v~~ll~~~~~~  453 (641)
                      .|+++        +..+..|.||+|.++..++..+++.+++.|++++..+..|.|++|.|+..+ ..+....+++.    
T Consensus       396 ~ga~~--------~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~----  463 (1143)
T KOG4177|consen  396 AGADP--------NSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQY----  463 (1143)
T ss_pred             ccCCc--------ccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhc----
Confidence            88874        344567888999998888888888888888888888888889999888888 67777777763    


Q ss_pred             cccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCc
Q psy8763         454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRN  533 (641)
Q Consensus       454 ~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  533 (641)
                       +.+++.....|.||||.|+..|+.++++.|++.++..+.....+-+++|.|...+...+.+.++++|++++.++..|.|
T Consensus       464 -g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~T  542 (1143)
T KOG4177|consen  464 -GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYT  542 (1143)
T ss_pred             -CCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccc
Confidence             4447888888889999999999999999888888888878888888999988888888888899999998888888889


Q ss_pred             hhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCC
Q psy8763         534 ILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGL  613 (641)
Q Consensus       534 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~  613 (641)
                      |||.|+..|            ++.+|++|+++|+|++++++.|+||||.|+..|+.+|+.+|+++|++   +|..|.+|.
T Consensus       543 pLh~A~~~g------------~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~---vna~d~~g~  607 (1143)
T KOG4177|consen  543 PLHVAVHYG------------NVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS---VNAADLDGF  607 (1143)
T ss_pred             hHHHHHhcC------------CchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC---CCcccccCc
Confidence            999999888            88889999999999998888899999999999988999999999988   888888999


Q ss_pred             hhHHHHHhhCCcceeeeceee
Q psy8763         614 TPLHIASKEGFHYSVSIFQVT  634 (641)
Q Consensus       614 t~l~~A~~~~~~~~~~~l~~~  634 (641)
                      |||++|...|+.+++++|+..
T Consensus       608 TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  608 TPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             chhHHHHHhcccchhhHHHhc
Confidence            999999999998888888765

>KOG4177|consensus

Probab=100.00  E-value=1.3e-65  Score=519.80  Aligned_cols=563  Identities=28%  Similarity=0.357  Sum_probs=510.4

Q ss_pred             cccccCCCceeeeccCCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHH
Q psy8763           5 SVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECAR   84 (641)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~   84 (641)
                      ++--|..++..+++. +|++++.....|.||||.|+..|+.++++.|+..|+.++  .++..|.||||.|+..|+.+++.
T Consensus        61 aa~~~~~~v~~~ll~-~~a~v~~~~~~~~~plh~a~~~~~a~~v~~ll~~ga~~~--~~~~~~lTpLh~aa~~g~~~~~~  137 (1143)
T KOG4177|consen   61 AAHYGNENVAELLLN-RGAIVNATARNGITPLHVASKRGDAEMVKLLLCRGAQID--ARDRDGLTPLHCAARKGHVQVIE  137 (1143)
T ss_pred             Hhhhhhhhhhhhhhc-cccccCcccccCccHHHHHHhhcchhHHHHHHhccCchh--hcccCCCcchhhhcccccHHHHH
Confidence            334455666677665 999999999999999999999999999999999999554  56788999999999999999999


Q ss_pred             HHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHH-----------------------hCCHHHHHHHHHhcccCCCc
Q psy8763          85 ILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAK-----------------------NASSKTMEVFLQFGESIGCS  141 (641)
Q Consensus        85 ~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~-----------------------~g~~~~v~~Ll~~~~~~~~~  141 (641)
                      +|+..            +++++.++.+|.||+++|+.                       .++.++++.++...++.   
T Consensus       138 ~ll~~------------~a~~~~k~~~g~t~l~~a~~~~~~~ll~~~~~~d~l~~~~~~~~~~~~~~~ll~~~~~~~---  202 (1143)
T KOG4177|consen  138 LLLQH------------GAPINIKTKNGLSPLHMAAQVACARLLLEYKAPDYLRLHVAAHCGHARVAKLLLDKKADP---  202 (1143)
T ss_pred             HHHHc------------cCCCcccccCCCCchhhhcchhhhHHhhhcccchhhhhhHHhhcchHHHHhhhhcccCCc---
Confidence            99999            89999999999999877654                       34444555555555554   


Q ss_pred             hhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCC
Q psy8763         142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD  221 (641)
Q Consensus       142 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  221 (641)
                           +..+.++.||+|.||..+.++++++++.+|+++...+..|.||+|.|+..|+.+++++++.+++.     ++..+
T Consensus       203 -----~a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~-----~~~~~  272 (1143)
T KOG4177|consen  203 -----NASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGAS-----VNVST  272 (1143)
T ss_pred             -----cccccCCCCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccc-----cCccc
Confidence                 45678999999999999999999999999999999999999999999999999999999999999     68899


Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCccc------ccccccccccCchhHHHHHHhcC
Q psy8763         222 AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELN  295 (641)
Q Consensus       222 ~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~a~~~~  295 (641)
                      ..+.||+|.|+..+..+++++|+++|+++...+....||++.+...+...+      .....+.....+.+++|.++..+
T Consensus       273 vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~  352 (1143)
T KOG4177|consen  273 VRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEG  352 (1143)
T ss_pred             ccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhh
Confidence            999999999999999999999999999999999999999999988886553      45566777889999999999999


Q ss_pred             ChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhc
Q psy8763         296 KVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF  375 (641)
Q Consensus       296 ~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~  375 (641)
                      +.++...+...+.  .-...++.+.+|++.|+..|..+.++.++ ..+.+++.....|.||+|.++..++..+++.+++.
T Consensus       353 ~~~~~~~l~~~~~--~~~~a~~k~~~pl~la~~~g~~~~v~Lll-~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~  429 (1143)
T KOG4177|consen  353 QVEVAGALLEHGA--QRRQAEEKGFTPLHLAVKSGRVSVVELLL-EAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKR  429 (1143)
T ss_pred             hHHHHHHhhcccc--ccCcccccCCcchhhhcccCchhHHHhhh-hccCCcccCCCCCcceeeehhhccCcceEEEEecc
Confidence            9998888888776  44566788999999999999999999999 78999999999999999999999999999999999


Q ss_pred             cccccCChHHHhHHHhhcCChHHHHHHhcC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Q psy8763         376 GESIGCSREEMISLFAAEGNLPLHSAVHGG-DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEK  454 (641)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~  454 (641)
                      |++.        +..+..|.|++|+|+..+ ..+....+++.|.+++.....|.||||.|+..|+.++++.+++..    
T Consensus       430 gA~~--------~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~----  497 (1143)
T KOG4177|consen  430 GASP--------NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGG----  497 (1143)
T ss_pred             CCCh--------hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcC----
Confidence            9984        567788999999999999 889999999999999999999999999999999999999999844    


Q ss_pred             ccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCch
Q psy8763         455 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI  534 (641)
Q Consensus       455 ~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  534 (641)
                       ...+.....+.+++|.|...+...+++.++++|++++.++..|.||||+|+..|++++|++|+++|++++.+++.|+||
T Consensus       498 -~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TP  576 (1143)
T KOG4177|consen  498 -ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTP  576 (1143)
T ss_pred             -CccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCCh
Confidence             4467778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCc--cccccCCCCC
Q psy8763         535 LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGS--FIINESDGEG  612 (641)
Q Consensus       535 l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~d~~g  612 (641)
                      ||.|+..|            +.+++++|+++|+++|..|.+|.|||++|+++|+.+++++|+..++.+  .+....+..|
T Consensus       577 LH~Aa~~G------------~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g  644 (1143)
T KOG4177|consen  577 LHQAAQQG------------HNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKG  644 (1143)
T ss_pred             hhHHHHcC------------hHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcc
Confidence            99999999            999999999999999999999999999999999999999999999872  1245678899


Q ss_pred             ChhHHHHHhhC
Q psy8763         613 LTPLHIASKEG  623 (641)
Q Consensus       613 ~t~l~~A~~~~  623 (641)
                      .+|++++...-
T Consensus       645 ~~p~~v~e~~~  655 (1143)
T KOG4177|consen  645 AVPEDVAEELD  655 (1143)
T ss_pred             cChhhHHHHhh
Confidence            99999877654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-57  Score=474.68  Aligned_cols=467  Identities=21%  Similarity=0.259  Sum_probs=311.6

Q ss_pred             CCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhh
Q psy8763          20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVK   99 (641)
Q Consensus        20 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~   99 (641)
                      +.|++....+..++||||+|++.|+.++|+.|++.++. -++..|..|.||||.|+..++.  +..++.-          
T Consensus        29 ~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~-~~~~~~~~~~tpLh~a~~~~~~--~~~~~~l----------   95 (682)
T PHA02876         29 KHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPE-LIYITDHKCHSTLHTICIIPNV--MDIVISL----------   95 (682)
T ss_pred             hhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcc-cchhhchhhccccccccCCCCc--ccccccc----------
Confidence            35667777777888999999999999999999988764 2456677888999988888873  3333332          


Q ss_pred             hcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCC
Q psy8763         100 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKI  179 (641)
Q Consensus       100 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~  179 (641)
                        ....+.....+.+.+..+........++.|.+.....+......  .......++++.|+..|+.+++++|++.|+++
T Consensus        96 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadv  171 (682)
T PHA02876         96 --TLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKI--NESIEYMKLIKERIQQDELLIAEMLLEGGADV  171 (682)
T ss_pred             --ccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhh--ccchhhhHHHHHHHHCCcHHHHHHHHhCCCCC
Confidence              11122223334444444444333333444433322211111100  01123467788888889999999999999999


Q ss_pred             CcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q psy8763         180 STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS  259 (641)
Q Consensus       180 ~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t  259 (641)
                      +.++..|.||||+|+..|+.++|++|+++|++     ++..+..|.|||++|+..++.+++++|++.+.+++.       
T Consensus       172 n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad-----~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~-------  239 (682)
T PHA02876        172 NAKDIYCITPIHYAAERGNAKMVNLLLSYGAD-----VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK-------  239 (682)
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-----cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC-------
Confidence            88888889999999999999999999988887     577778888899999988888899988888765532       


Q ss_pred             HHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHH
Q psy8763         260 PLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV  339 (641)
Q Consensus       260 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  339 (641)
                                                                                 +.++++.|+..++.+.+++|+
T Consensus       240 -----------------------------------------------------------~~~~L~~ai~~~~~~~~~~Ll  260 (682)
T PHA02876        240 -----------------------------------------------------------NDLSLLKAIRNEDLETSLLLY  260 (682)
T ss_pred             -----------------------------------------------------------CcHHHHHHHHcCCHHHHHHHH
Confidence                                                                       123444555555555555555


Q ss_pred             HhcCccccccccCCCChHHHHHHcCCh-HHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcC-CHHHHHHHHHCC
Q psy8763         340 KDFGASLKRACSNGYYPIHDAAKNASS-KTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG-DFKAVELCLKSG  417 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~g  417 (641)
                       ..|++++..+..|.||||+|+..++. +++++|++.|++++        ..+..|.||||.|+..| ..+.+++|+..|
T Consensus       261 -~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin--------~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g  331 (682)
T PHA02876        261 -DAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVN--------AKNIKGETPLYLMAKNGYDTENIRTLIMLG  331 (682)
T ss_pred             -HCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCC--------CcCCCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence             45555555555666666666665554 45666666665532        33445666666666666 466777777777


Q ss_pred             CCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCC
Q psy8763         418 AKISTQQFDLSTPVHLACSQ-GALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK  496 (641)
Q Consensus       418 ~~~~~~~~~~~t~l~~a~~~-~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  496 (641)
                      ++++..+..|.||||.|+.. ++.++++.|++.     +.+++.+|..|.||||+|+..++.+++++|+++|++++..+.
T Consensus       332 adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-----gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~  406 (682)
T PHA02876        332 ADVNAADRLYITPLHQASTLDRNKDIVITLLEL-----GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQ  406 (682)
T ss_pred             CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc-----CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCC
Confidence            77777777777777777664 356666666663     334666777777777777777777777777777777777777


Q ss_pred             CCCCHHHHHHhcCC-HHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCC
Q psy8763         497 EKRSPLLLAASRGG-WKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS  575 (641)
Q Consensus       497 ~g~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~  575 (641)
                      .|.||||+|+..++ ..++++|+++|++++.+|..|.||||+|+..+.           ..+++++|+++|++++.+|..
T Consensus       407 ~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~-----------~~~iv~lLl~~Gad~n~~d~~  475 (682)
T PHA02876        407 KIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNC-----------KLDVIEMLLDNGADVNAINIQ  475 (682)
T ss_pred             CCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCC-----------cHHHHHHHHHCCCCCCCCCCC
Confidence            77777777765444 355677777777777777777777777776541           456777777777777777777


Q ss_pred             CCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         576 NESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       576 g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      |.|||++|+.++  .+++.|+..|++
T Consensus       476 g~tpl~~a~~~~--~~v~~Ll~~~a~  499 (682)
T PHA02876        476 NQYPLLIALEYH--GIVNILLHYGAE  499 (682)
T ss_pred             CCCHHHHHHHhC--CHHHHHHHCCCC
Confidence            777777777654  467777777765

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.6e-56  Score=464.79  Aligned_cols=485  Identities=20%  Similarity=0.226  Sum_probs=389.8

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhcccc
Q psy8763          71 LHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD  150 (641)
Q Consensus        71 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  150 (641)
                      |..++..|..+-.-.++....      +...|++....+..+.||||.|+..|+.++|+.|++.+++.       ....|
T Consensus         6 l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~-------~~~~~   72 (682)
T PHA02876          6 LYRIMCRGNCIDILSAIDNYD------LHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPEL-------IYITD   72 (682)
T ss_pred             HHHHHhcCchHHHHHHHHHHH------HhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCccc-------chhhc
Confidence            677777777744333333321      23337777777888999999999999999999999998764       35668


Q ss_pred             CCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccc--cCCCCCCcHH
Q psy8763         151 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN--STDAQKMTPL  228 (641)
Q Consensus       151 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~--~~~~~~~t~L  228 (641)
                      ..|.||||+|+..++.  +..++......+.....+.+.+..+.......+++.|.+...... ....  .......+++
T Consensus        73 ~~~~tpLh~a~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~-~~~~~~~~~~~~~~~l  149 (682)
T PHA02876         73 HKCHSTLHTICIIPNV--MDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGND-IHYDKINESIEYMKLI  149 (682)
T ss_pred             hhhccccccccCCCCc--cccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHhhccchhhhHHH
Confidence            8999999999999874  344443322222223333344444433333333333332221110 0001  1122345788


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCC
Q psy8763         229 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKD  308 (641)
Q Consensus       229 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  308 (641)
                      +.|+..++.+++++|+++|++++..+..|.||||+|+..|                           +.+++++|++.|+
T Consensus       150 ~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G---------------------------~~~iv~~LL~~Ga  202 (682)
T PHA02876        150 KERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERG---------------------------NAKMVNLLLSYGA  202 (682)
T ss_pred             HHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC---------------------------CHHHHHHHHHCCC
Confidence            9999999999999999999999999999988888777655                           8999999999998


Q ss_pred             cccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhH
Q psy8763         309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS  388 (641)
Q Consensus       309 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  388 (641)
                        +++..+..|.|||+.|+..++.++++.|+ ..+..++    .+.++++.|+..++.+.+++|++.|++++        
T Consensus       203 --d~n~~~~~g~t~L~~A~~~~~~~ivk~Ll-~~~~~~~----~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn--------  267 (682)
T PHA02876        203 --DVNIIALDDLSVLECAVDSKNIDTIKAII-DNRSNIN----KNDLSLLKAIRNEDLETSLLLYDAGFSVN--------  267 (682)
T ss_pred             --CcCccCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCCC----CCcHHHHHHHHcCCHHHHHHHHHCCCCCC--------
Confidence              55566677899999999999999999999 4455443    34578999999999999999999998864        


Q ss_pred             HHhhcCChHHHHHHhcCCH-HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCccccccccCCCCCC
Q psy8763         389 LFAAEGNLPLHSAVHGGDF-KAVELCLKSGAKISTQQFDLSTPVHLACSQG-ALDIVRLMFNLQPSEKLVCLNSTDAQKM  466 (641)
Q Consensus       389 ~~~~~~~t~l~~a~~~~~~-~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~-~~~~v~~ll~~~~~~~~~~~~~~~~~~~  466 (641)
                      ..+..|.||||+|+..++. +++++|++.|++++..+..|.||||.|+..| ..++++.|+..+     .+++..+..|.
T Consensus       268 ~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g-----adin~~d~~g~  342 (682)
T PHA02876        268 SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLG-----ADVNAADRLYI  342 (682)
T ss_pred             CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC-----CCCCCcccCCC
Confidence            3456799999999999986 6999999999999999999999999999999 699999999854     44788999999


Q ss_pred             cHHHHHHhc-CChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCc
Q psy8763         467 TPLHCAAMF-DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH  545 (641)
Q Consensus       467 t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  545 (641)
                      ||||+|+.. +..+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..+.  
T Consensus       343 TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~--  420 (682)
T PHA02876        343 TPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTN--  420 (682)
T ss_pred             cHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCC--
Confidence            999999985 47889999999999999999999999999999999999999999999999999999999999997662  


Q ss_pred             hhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcC-CHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCC
Q psy8763         546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYG-RYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGF  624 (641)
Q Consensus       546 ~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~  624 (641)
                               ...++++|+++|+++|.+|..|+||||+|+..+ +.+++++|++.|++   ++..|..|.|||++|+..+ 
T Consensus       421 ---------~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad---~n~~d~~g~tpl~~a~~~~-  487 (682)
T PHA02876        421 ---------PYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD---VNAINIQNQYPLLIALEYH-  487 (682)
T ss_pred             ---------HHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHhC-
Confidence                     567899999999999999999999999999877 68999999999999   8999999999999999765 


Q ss_pred             cceeeeceee
Q psy8763         625 HYSVSIFQVT  634 (641)
Q Consensus       625 ~~~~~~l~~~  634 (641)
                       +++++|+..
T Consensus       488 -~~v~~Ll~~  496 (682)
T PHA02876        488 -GIVNILLHY  496 (682)
T ss_pred             -CHHHHHHHC
Confidence             466666544

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-53  Score=425.92  Aligned_cols=449  Identities=15%  Similarity=0.096  Sum_probs=295.9

Q ss_pred             HHHHHHHHhcCCccccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHH
Q psy8763          45 VPILLILLQYKDMIDILQGGEHGRTALHIAAIY---DFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAK  121 (641)
Q Consensus        45 ~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~  121 (641)
                      ++.|+.|+..|.  .++..|.+|.||||+|+..   |+.++|++|++.            |++++..+..|+||||+|+.
T Consensus        12 ~~~~~~l~~~~~--~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~------------ga~v~~~~~~g~TpL~~Aa~   77 (661)
T PHA02917         12 LDELKQMLRDRD--PNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS------------GTNPLHKNWRQLTPLEEYTN   77 (661)
T ss_pred             HHHHHHHHhccC--cccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC------------CCCccccCCCCCCHHHHHHH
Confidence            566677776665  3345677777777776444   667777777777            77777777777777777777


Q ss_pred             hCCHH----HHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHH--H
Q psy8763         122 NASSK----TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC--S  195 (641)
Q Consensus       122 ~g~~~----~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~--~  195 (641)
                      .|+.+    +++.|++.+...+.        .+  ..+++++|+..|+.++|++|+++|++++.++..|+|||+.|+  .
T Consensus        78 ~g~~~v~~~~~~~Ll~~~~~~n~--------~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~  147 (661)
T PHA02917         78 SRHVKVNKDIAMALLEATGYSNI--------ND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTD  147 (661)
T ss_pred             cCChhHHHHHHHHHHhccCCCCC--------CC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHcc
Confidence            77743    45666665433321        11  235666677777777777777777777777777777777543  4


Q ss_pred             cCcHHHHHHHHhcCCCccccccccCC---CCC-----------CcHHHHHHh-----------cCcHHHHHHHHHcCCCC
Q psy8763         196 QGALDIVRLMFNLQPSEKLVCLNSTD---AQK-----------MTPLHCAAM-----------FDRCDVVQYLIDEGADL  250 (641)
Q Consensus       196 ~g~~~iv~~Ll~~~~~~~~~~~~~~~---~~~-----------~t~L~~A~~-----------~~~~~iv~~Ll~~g~~~  250 (641)
                      .|+.+++++|+++|++.     +..+   ..|           .||||+|+.           .++.+++++|+++|+++
T Consensus       148 ~~~~eivklLi~~Ga~v-----n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv  222 (661)
T PHA02917        148 DPVPEIIDLFIENGCSV-----LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP  222 (661)
T ss_pred             CCCHHHHHHHHHcCCCc-----cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc
Confidence            56777777777777763     3222   222           488888875           35778888888888888


Q ss_pred             CccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCccc--ccCCCCCcchHHHHHHH
Q psy8763         251 NVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMID--ILQGGEHGRTALHIAAI  328 (641)
Q Consensus       251 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~~~l~~a~~  328 (641)
                      +..+..|.||||+|+..++                         .+.++++.|++ +....  ....+..+.++++.++.
T Consensus       223 n~~d~~G~TpLh~A~~~g~-------------------------~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~y  276 (661)
T PHA02917        223 SSIDKNYCTALQYYIKSSH-------------------------IDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADY  276 (661)
T ss_pred             ccCCCCCCcHHHHHHHcCC-------------------------CcHHHHHHHHh-CCcccccccccCcccccchHHHHH
Confidence            8888888888877776652                         12467777764 44221  11234556777787773


Q ss_pred             h---------CcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHh-ccccccCChHHHhHHHhhcCChHH
Q psy8763         329 Y---------DFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ-FGESIGCSREEMISLFAAEGNLPL  398 (641)
Q Consensus       329 ~---------~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~t~l  398 (641)
                      -         ...++++.|+ +.|++      .+.++++++...+..+++++++. .+.++              -.+++
T Consensus       277 l~~~~~~~~~v~~~iv~~Li-~~Ga~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l  335 (661)
T PHA02917        277 LNSDYRYNKDVDLDLVKLFL-ENGKP------HGIMCSIVPLWRNDKETISLILKTMNSDV--------------LQHIL  335 (661)
T ss_pred             HHhhccccccchHHHHHHHH-hCCCC------CceeEeeecccccchHHHHHHHHHhchHH--------------HHHHH
Confidence            1         1678999999 55653      56677888888888888888884 33321              01223


Q ss_pred             HHHHhcCC--HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcC
Q psy8763         399 HSAVHGGD--FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD  476 (641)
Q Consensus       399 ~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~  476 (641)
                      ..++..|.  .+++++|++.|++++.++..|.++.    ...+.+++++|+..    .+.+++..+..|.||||.|++.+
T Consensus       336 ~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~----~~~~~~~i~~LL~~----~ga~~~~~~~~G~TpL~~a~~~~  407 (661)
T PHA02917        336 IEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRN----INIDSYTMKYLLKK----EGGDAVNHLDDGEIPIGHLCKSN  407 (661)
T ss_pred             HHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchh----hcCCHHHHHHHHHh----cCCCccccCCCCCChhHHHHHhc
Confidence            33444665  5699999999999998888887754    35677788888863    12234455667999999887655


Q ss_pred             Ch--hHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHH
Q psy8763         477 RC--DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA  554 (641)
Q Consensus       477 ~~--~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~  554 (641)
                      ..  ++..+..          ..|.+....+  .+..+++++|+++|++++.+|..|.||||+|+..+            
T Consensus       408 ~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~------------  463 (661)
T PHA02917        408 YGCYNFYTYTY----------KKGLCDMSYA--CPILSTINICLPYLKDINMIDKRGETLLHKAVRYN------------  463 (661)
T ss_pred             ccchhhhhhhh----------hhccchhhhh--hhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcC------------
Confidence            43  2221111          1222222222  22566777777777777777777777777777766            


Q ss_pred             HHHHHHHHhhcCCcccccCCCCCChHHHHHh-cCCHHHHHHHHhcCCC
Q psy8763         555 AVFLGENLINLGACINLKNNSNESPLHLAAR-YGRYNTVKKLLSSERG  601 (641)
Q Consensus       555 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~  601 (641)
                      ..+++++|+++|++++.++..|.||||+|+. .++.+++++|+.+|++
T Consensus       464 ~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~  511 (661)
T PHA02917        464 KQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPT  511 (661)
T ss_pred             CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC
Confidence            6677777777777777777777777777774 5667777777777776

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.2e-53  Score=426.04  Aligned_cols=456  Identities=14%  Similarity=0.106  Sum_probs=346.0

Q ss_pred             CceeeeccCCCcccccccCCCcchhhHHHhc---CCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHH----HHH
Q psy8763          12 NKSRLIPSSSGVNTRILNNKKQAVLHLATEL---NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE----CAR   84 (641)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~----iv~   84 (641)
                      +.++.++. .|...+.+|.+|+||||+|++.   |+.++|++|++.|+  +++..+..|.||||.|+..|+.+    +++
T Consensus        13 ~~~~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga--~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         13 DELKQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGT--NPLHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCC--CccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            45677776 7777799999999999997555   88999999999998  55678899999999999999955    556


Q ss_pred             HHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHH--h
Q psy8763          85 ILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV--H  162 (641)
Q Consensus        85 ~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~--~  162 (641)
                      +|++.            +...+..+  ..+++++|+.+|+.+++++|+++|+++        +..|..|.|||+.|+  .
T Consensus        90 ~Ll~~------------~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi--------n~~d~~g~T~L~~~~a~~  147 (661)
T PHA02917         90 ALLEA------------TGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDL--------SVKCENHRSVIENYVMTD  147 (661)
T ss_pred             HHHhc------------cCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCC--------CccCCCCccHHHHHHHcc
Confidence            77765            32233322  236788899999999999999999998        566889999999654  5


Q ss_pred             CCCHHHHHHHHHcCCCCCcCCC---CC-----------CcHHHHHHH-----------cCcHHHHHHHHhcCCCcccccc
Q psy8763         163 GGDFKAVELCLKSGAKISTQQF---DL-----------STPVHLACS-----------QGALDIVRLMFNLQPSEKLVCL  217 (641)
Q Consensus       163 ~g~~~~v~~Ll~~g~~~~~~~~---~~-----------~t~l~~A~~-----------~g~~~iv~~Ll~~~~~~~~~~~  217 (641)
                      .|+.++|++|+++|++++..+.   .|           .||||+|+.           .++.++|++|+++|++     +
T Consensus       148 ~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-----v  222 (661)
T PHA02917        148 DPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-----P  222 (661)
T ss_pred             CCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-----c
Confidence            7899999999999999986543   23           599999986           4689999999999998     7


Q ss_pred             ccCCCCCCcHHHHHHhcCcH--HHHHHHHHcCCCCC----ccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHH
Q psy8763         218 NSTDAQKMTPLHCAAMFDRC--DVVQYLIDEGADLN----VLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLA  291 (641)
Q Consensus       218 ~~~~~~~~t~L~~A~~~~~~--~iv~~Ll~~g~~~~----~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a  291 (641)
                      +..+..|.||||+|+..|+.  ++|++|++ |++++    ..+..+.+|+++++.-++..                  ..
T Consensus       223 n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~------------------~~  283 (661)
T PHA02917        223 SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDY------------------RY  283 (661)
T ss_pred             ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhc------------------cc
Confidence            99999999999999999985  79999985 88775    34556677776665321000                  00


Q ss_pred             HhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCC--hHHH
Q psy8763         292 TELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNAS--SKTM  369 (641)
Q Consensus       292 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~  369 (641)
                      ....+.++++.|++.|+  +      .+.+++++++..+..+++++++...+.++-.      +++..++..+.  .+++
T Consensus       284 ~~~v~~~iv~~Li~~Ga--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~g~~~~~~v  349 (661)
T PHA02917        284 NKDVDLDLVKLFLENGK--P------HGIMCSIVPLWRNDKETISLILKTMNSDVLQ------HILIEYMTFGDIDIPLV  349 (661)
T ss_pred             cccchHHHHHHHHhCCC--C------CceeEeeecccccchHHHHHHHHHhchHHHH------HHHHHHHHcCCCcHHHH
Confidence            00127799999999997  2      4678899999999999999999654444311      22333444665  5699


Q ss_pred             HHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHH
Q psy8763         370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQGAL--DIVRLM  446 (641)
Q Consensus       370 ~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~--~~v~~l  446 (641)
                      ++|++.|++++.        .+..|.++.    .....+++++|+. .|++++..+..|.||||.|++.+..  +...+.
T Consensus       350 ~~Ll~~GAdvn~--------~~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~  417 (661)
T PHA02917        350 ECMLEYGAVVNK--------EAIHGYFRN----INIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYT  417 (661)
T ss_pred             HHHHHcCCCCCC--------CCccccchh----hcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhh
Confidence            999999999763        345666633    3567788888887 6888777777899999999876543  322211


Q ss_pred             HhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccc
Q psy8763         447 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL  526 (641)
Q Consensus       447 l~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  526 (641)
                      ..               .|.+..  +...+..+++++|+++|+++|.++..|+||||+|+..++.+++++|+++|++++.
T Consensus       418 ~~---------------~~~~~~--~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~  480 (661)
T PHA02917        418 YK---------------KGLCDM--SYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNI  480 (661)
T ss_pred             hh---------------hccchh--hhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            11               122221  2223367788888888888888888888888888888888888888888888888


Q ss_pred             cccCCCchhHHHhh-cCCCchhhHHHHHHHHHHHHHHhhcCCcccc
Q psy8763         527 KDINRRNILHLLVL-NGGGHIKEFAEEVAAVFLGENLINLGACINL  571 (641)
Q Consensus       527 ~~~~g~t~l~~a~~-~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~  571 (641)
                      ++..|.||||+|+. .+            ..+++++|+.+|++++.
T Consensus       481 ~d~~G~T~L~~A~~~~~------------~~~iv~~LL~~ga~i~~  514 (661)
T PHA02917        481 RSNNGYTCIAIAINESR------------NIELLKMLLCHKPTLDC  514 (661)
T ss_pred             CCCCCCCHHHHHHHhCC------------CHHHHHHHHHcCCChhH
Confidence            88888888888885 45            67788888888877763

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.7e-50  Score=390.54  Aligned_cols=360  Identities=17%  Similarity=0.207  Sum_probs=269.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHH--hCCHHHHHHHHHhcccCCCchhhhhcc
Q psy8763          71 LHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAK--NASSKTMEVFLQFGESIGCSREEMISL  148 (641)
Q Consensus        71 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~  148 (641)
                      +..+...++.+.++.+++...                 ...+.++||.++.  .++.+++++|+++|+++        +.
T Consensus        13 l~~~~~~~n~~~~~~~l~~~~-----------------~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadv--------n~   67 (446)
T PHA02946         13 LYAKYNSKNLDVFRNMLQAIE-----------------PSGNYHILHAYCGIKGLDERFVEELLHRGYSP--------NE   67 (446)
T ss_pred             HHHHHccCcHHHHHHHHhccC-----------------CCCCChHHHHHHHhcCCCHHHHHHHHHCcCCC--------Cc
Confidence            356666777777777776410                 0113467776653  34567777777777776        45


Q ss_pred             ccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcC--cHHHHHHHHhcCCCccccccc-cCCCCCC
Q psy8763         149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG--ALDIVRLMFNLQPSEKLVCLN-STDAQKM  225 (641)
Q Consensus       149 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~-~~~~~~~  225 (641)
                      .|..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..+  ..+++++|++++++     ++ ..+..|.
T Consensus        68 ~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad-----in~~~d~~g~  142 (446)
T PHA02946         68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK-----INNSVDEEGC  142 (446)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-----cccccCCCCC
Confidence            5677778888888777778888888888777777777778888777655  36777777777776     34 3466777


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhh
Q psy8763         226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQ  305 (641)
Q Consensus       226 t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  305 (641)
                      |||+ |+..++.+++++|++.|++++..+..|.||+|+++..+                                     
T Consensus       143 tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~-------------------------------------  184 (446)
T PHA02946        143 GPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSD-------------------------------------  184 (446)
T ss_pred             cHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhc-------------------------------------
Confidence            8886 55567778888888888877776666666666554322                                     


Q ss_pred             CCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHH
Q psy8763         306 YKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREE  385 (641)
Q Consensus       306 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~  385 (641)
                                             .+..+++++|+ ..|++++..+                                   
T Consensus       185 -----------------------~~~~~~v~~Ll-~~Gadin~~d-----------------------------------  205 (446)
T PHA02946        185 -----------------------NPKASTISWMM-KLGISPSKPD-----------------------------------  205 (446)
T ss_pred             -----------------------CCCHHHHHHHH-HcCCCCcccC-----------------------------------
Confidence                                   11223444444 3344444333                                   


Q ss_pred             HhHHHhhcCChHHHHHHhcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHhcCCCccccccccCC
Q psy8763         386 MISLFAAEGNLPLHSAVHGG--DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA-LDIVRLMFNLQPSEKLVCLNSTD  462 (641)
Q Consensus       386 ~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~-~~~v~~ll~~~~~~~~~~~~~~~  462 (641)
                            ..|.||||+|+..+  +.+++++|+. |++++.++..|.||||.|+..++ .+++++|++.+..     .    
T Consensus       206 ------~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~-----~----  269 (446)
T PHA02946        206 ------HDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV-----I----  269 (446)
T ss_pred             ------CCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC-----C----
Confidence                  34555666666554  6789999885 89999999999999999999988 5889999985422     1    


Q ss_pred             CCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcC
Q psy8763         463 AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG  542 (641)
Q Consensus       463 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  542 (641)
                       .++ .++.|+..+..++++++.++|.      ..|.||||+|+..|+.+++++|+++|+       .|.||||+|+..+
T Consensus       270 -~~~-~~~~a~~~~~~~~~e~l~~~g~------~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~  334 (446)
T PHA02946        270 -TDQ-TVNICIFYDRDDVLEIINDKGK------QYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSE  334 (446)
T ss_pred             -CCc-HHHHHHHcCchHHHHHHHHcCc------ccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhC
Confidence             133 4899999999999999999875      347899999999999999999999875       4689999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         543 GGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                                  ..+++++|+.+|+++|.. ..|.||||+|++.++.++++.|+.+.++
T Consensus       335 ------------~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~  380 (446)
T PHA02946        335 ------------YETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNPT  380 (446)
T ss_pred             ------------HHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCcc
Confidence                        999999999999999985 5899999999999999999999997765

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-49  Score=386.84  Aligned_cols=201  Identities=13%  Similarity=0.112  Sum_probs=145.2

Q ss_pred             HHHHHHHHhcCCccccccCCCCCchHHHHHHHcC---CHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHH
Q psy8763          45 VPILLILLQYKDMIDILQGGEHGRTALHIAAIYD---FDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAK  121 (641)
Q Consensus        45 ~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~  121 (641)
                      ...+++.++..+.++ ...|..|+||||+|+..|   +.++|++|+++            ||+++.+|..|+||||+|+.
T Consensus        20 ~~~~~~~~~~~~~in-~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~------------GAdin~kD~~G~TPLh~Aa~   86 (672)
T PHA02730         20 YKKIKLEIETCHNLS-KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR------------GVERLCRNNEGLTPLGVYSK   86 (672)
T ss_pred             HHHHHHHHHHhcchh-hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC------------CCCCcccCCCCCChHHHHHH
Confidence            455666777765333 266778888888888886   48888888888            88888888888888888888


Q ss_pred             hC--CHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHh--CCCHHHHHHHHH-cCCCCCcCCC-----CCCcHHH
Q psy8763         122 NA--SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVH--GGDFKAVELCLK-SGAKISTQQF-----DLSTPVH  191 (641)
Q Consensus       122 ~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~--~g~~~~v~~Ll~-~g~~~~~~~~-----~~~t~l~  191 (641)
                      .+  +.+++++|++.|++++.      +..+..+.+||+.++.  .++.++|++|++ .+++++....     .|.+|++
T Consensus        87 ~~~~~~eIv~~Ll~~~~~~~~------~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~y  160 (672)
T PHA02730         87 RKYVKSQIVHLLISSYSNASN------ELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIY  160 (672)
T ss_pred             cCCCcHHHHHHHHhcCCCCCc------ccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhh
Confidence            66  68888888888765531      2345557788887777  778888888886 6677776532     6778888


Q ss_pred             HHHHcCcHHHHHHHHhcCCCcccccc--ccCCCCCC-cHHHHHH------hcCcHHHHHHHHHcCCCCCccCCCCCCHHH
Q psy8763         192 LACSQGALDIVRLMFNLQPSEKLVCL--NSTDAQKM-TPLHCAA------MFDRCDVVQYLIDEGADLNVLDKEKRSPLL  262 (641)
Q Consensus       192 ~A~~~g~~~iv~~Ll~~~~~~~~~~~--~~~~~~~~-t~L~~A~------~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~  262 (641)
                      ++...++.++|++|+++|+......+  ...+.... |.|++++      ..++.+++++|+++|++++..+..|.||||
T Consensus       161 l~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh  240 (672)
T PHA02730        161 VTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQ  240 (672)
T ss_pred             HhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            88888888888888888877421100  11222233 3444333      456788999999999999988888888887


Q ss_pred             HH
Q psy8763         263 LA  264 (641)
Q Consensus       263 ~a  264 (641)
                      ++
T Consensus       241 ~~  242 (672)
T PHA02730        241 YY  242 (672)
T ss_pred             HH
Confidence            53

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-49  Score=386.14  Aligned_cols=205  Identities=14%  Similarity=0.144  Sum_probs=166.8

Q ss_pred             ccc-cccCCCcchhhHHHhcC---CHHHHHHHHhcCCccccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCcchhH
Q psy8763          24 NTR-ILNNKKQAVLHLATELN---KVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD--FDECARILVSEQPECDWIM   97 (641)
Q Consensus        24 ~~~-~~~~~~~t~L~~A~~~g---~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~   97 (641)
                      ++| .+|..|+||||+|+..|   +.++|++|+++|+  +++..|..|.||||.|+..|  +.|+|++|++.+.      
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GA--din~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~------  103 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGV--ERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYS------  103 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCC--CCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCC------
Confidence            555 88999999999999987   5999999999999  67788999999999999977  7999999999832      


Q ss_pred             hhhcCCCcccCCCCCCcHHHHHHH--hCCHHHHHHHHH-hcccCCCchhhhhcccc-CCCChHHHHHHhCCCHHHHHHHH
Q psy8763          98 VKDFGASLKRACSNGYYPIHDAAK--NASSKTMEVFLQ-FGESIGCSREEMISLFD-AEGNLPLHSAVHGGDFKAVELCL  173 (641)
Q Consensus        98 ~~~~g~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll  173 (641)
                          +++++..+..+.+||+.++.  +++.+++++|++ .+.+++..    .+..+ ..|.+|++.|...++.++|++|+
T Consensus       104 ----~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~----~~~~~~~~~~~~~yl~~~~~~~eIvklLi  175 (672)
T PHA02730        104 ----NASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN----TNYYIHCLGLVDIYVTTPNPRPEVLLWLL  175 (672)
T ss_pred             ----CCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhh----hhhhccccchhhhhHhcCCCchHHHHHHH
Confidence                34447677778899999998  999999999997 66676421    11112 37899999999999999999999


Q ss_pred             HcCCCCC-------cCCCCCC-cHHHHH------HHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHH--HHhcCcH
Q psy8763         174 KSGAKIS-------TQQFDLS-TPVHLA------CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC--AAMFDRC  237 (641)
Q Consensus       174 ~~g~~~~-------~~~~~~~-t~l~~A------~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~--A~~~~~~  237 (641)
                      ++|++++       ..+.... |.||++      ...++.+++++|+++|++     ++.++..|.||||+  |...++.
T Consensus       176 ~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-----IN~kd~~G~TpLh~~~~~~~~~~  250 (672)
T PHA02730        176 KSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-----IHGRDEGGSLPIQYYWSCSTIDI  250 (672)
T ss_pred             HcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHcCcccH
Confidence            9999995       1333344 444433      456789999999999999     79999999999995  5556779


Q ss_pred             HHHHHHHHcCCC
Q psy8763         238 DVVQYLIDEGAD  249 (641)
Q Consensus       238 ~iv~~Ll~~g~~  249 (641)
                      ++|++|++.-.+
T Consensus       251 eiv~~Li~~~~~  262 (672)
T PHA02730        251 EIVKLLIKDVDT  262 (672)
T ss_pred             HHHHHHHhcccc
Confidence            999999985443

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.2e-48  Score=381.29  Aligned_cols=362  Identities=15%  Similarity=0.190  Sum_probs=299.7

Q ss_pred             chhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHH--cCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCC
Q psy8763          34 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI--YDFDECARILVSEQPECDWIMVKDFGASLKRACSN  111 (641)
Q Consensus        34 t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~  111 (641)
                      -+|+.++..++.+.++.+++...       ...+.++||.++.  .++.++|++|+++            |++++.++..
T Consensus        11 ~sl~~~~~~~n~~~~~~~l~~~~-------~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~------------Gadvn~~d~~   71 (446)
T PHA02946         11 LSLYAKYNSKNLDVFRNMLQAIE-------PSGNYHILHAYCGIKGLDERFVEELLHR------------GYSPNETDDD   71 (446)
T ss_pred             HHHHHHHccCcHHHHHHHHhccC-------CCCCChHHHHHHHhcCCCHHHHHHHHHC------------cCCCCccCCC
Confidence            35788889999999999998532       1234789998764  4578999999999            9999999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCC--CHHHHHHHHHcCCCCCc-CCCCCCc
Q psy8763         112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG--DFKAVELCLKSGAKIST-QQFDLST  188 (641)
Q Consensus       112 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~-~~~~~~t  188 (641)
                      |+||||+|+..|+.+++++|+++|+++        +.+|..|.||||+|+..+  ..+++++|+++|++++. .+..|.|
T Consensus        72 G~TpLh~Aa~~g~~eiv~lLL~~GAdi--------n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~t  143 (446)
T PHA02946         72 GNYPLHIASKINNNRIVAMLLTHGADP--------NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCG  143 (446)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCC--------CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCc
Confidence            999999999999999999999999997        567899999999998766  48999999999999995 6889999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCc--HHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Q psy8763         189 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR--CDVVQYLIDEGADLNVLDKEKRSPLLLAAS  266 (641)
Q Consensus       189 ~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~--~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~  266 (641)
                      ||+ |+..|+.+++++|++.+++     ++..+..|.||||.|+..++  .+++++|+++|++++..|..|.||||+|+.
T Consensus       144 pL~-aa~~~~~~vv~~Ll~~gad-----~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~  217 (446)
T PHA02946        144 PLL-ACTDPSERVFKKIMSIGFE-----ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCS  217 (446)
T ss_pred             HHH-HHHCCChHHHHHHHhcccc-----ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            997 6777999999999999988     68899999999999987654  689999999999999887777777666654


Q ss_pred             cCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccc
Q psy8763         267 RGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASL  346 (641)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  346 (641)
                      .+                                                            .++.+++++|+ . ++++
T Consensus       218 ~~------------------------------------------------------------~~~~~iv~lLl-~-gadi  235 (446)
T PHA02946        218 KT------------------------------------------------------------VKNVDIINLLL-P-STDV  235 (446)
T ss_pred             cC------------------------------------------------------------CCcHHHHHHHH-c-CCCC
Confidence            32                                                            02455666665 3 5667


Q ss_pred             cccccCCCChHHHHHHcCC-hHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCC
Q psy8763         347 KRACSNGYYPIHDAAKNAS-SKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF  425 (641)
Q Consensus       347 ~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  425 (641)
                      +..+..|.||||.|+..++ .++++.|+++|+..+             ++ .++.++..+..++++.+..+|.+      
T Consensus       236 n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~-------------~~-~~~~a~~~~~~~~~e~l~~~g~~------  295 (446)
T PHA02946        236 NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT-------------DQ-TVNICIFYDRDDVLEIINDKGKQ------  295 (446)
T ss_pred             CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC-------------Cc-HHHHHHHcCchHHHHHHHHcCcc------
Confidence            7777777777777777766 367777777765431             22 36778888888888888887753      


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHH
Q psy8763         426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA  505 (641)
Q Consensus       426 ~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  505 (641)
                      .+.||||+|+..|+.+++++|++.+            ..+.||||+|+..++.+++++|+.+|+++|.. ..|.||||+|
T Consensus       296 ~~~TpLh~Aa~~g~~eivk~Ll~~~------------~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a  362 (446)
T PHA02946        296 YDSTDFKMAVEVGSIRCVKYLLDND------------IICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSEC  362 (446)
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHCC------------CccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHH
Confidence            4679999999999999999999843            24789999999999999999999999999985 6899999999


Q ss_pred             HhcCCHHHHHHHHHcCCC
Q psy8763         506 ASRGGWKTVLTLVRNKAN  523 (641)
Q Consensus       506 ~~~~~~~~v~~Ll~~g~~  523 (641)
                      ++.++.++++.|+.+..+
T Consensus       363 ~~~~~~~~~~~ll~~~~~  380 (446)
T PHA02946        363 VRLNNPVILSKLMLHNPT  380 (446)
T ss_pred             HHcCCHHHHHHHHhcCcc
Confidence            999999999999996554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.7e-46  Score=375.03  Aligned_cols=386  Identities=17%  Similarity=0.170  Sum_probs=249.1

Q ss_pred             HcCCHHHHHHHHhcCCCcchhHhhhcC-CCcccC-CCCCCcHHHHHHH--hCCHHHHHHHHHhcccCCCchhhhhccccC
Q psy8763          76 IYDFDECARILVSEQPECDWIMVKDFG-ASLKRA-CSNGYYPIHDAAK--NASSKTMEVFLQFGESIGCSREEMISLFDA  151 (641)
Q Consensus        76 ~~g~~~iv~~Ll~~~~~~~~~~~~~~g-~~~~~~-~~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  151 (641)
                      +.++.++|++|+++            | ++++.. +..|.||||.|+.  .++.+++++|+++|+++        +..|.
T Consensus       151 ~~v~leiVk~LLe~------------G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV--------N~kD~  210 (764)
T PHA02716        151 RGIDLDLIKYMVDV------------GIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV--------NLQNN  210 (764)
T ss_pred             cCCCHHHHHHHHHC------------CCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC--------CCCCC
Confidence            34677777777777            6 777776 6777777777654  35677777777777776        44567


Q ss_pred             CCChHHHHHHhCCC--HHHHHHHHHcCCCCCcCCCCCCcHHHHHH---HcCcHHHHHHHHhcCCCccccccccCCCCCCc
Q psy8763         152 EGNLPLHSAVHGGD--FKAVELCLKSGAKISTQQFDLSTPVHLAC---SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT  226 (641)
Q Consensus       152 ~~~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~---~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t  226 (641)
                      .|.||||+|+..|+  .++|++|+++|++++.++..|.||||+|+   ..++.++++.|++.....      .. ....+
T Consensus       211 ~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n------~~-~~~~~  283 (764)
T PHA02716        211 HLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGN------KV-KNIPM  283 (764)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccc------cc-ccchh
Confidence            77777777777774  47777777777777777777777777764   456777777777653321      00 11112


Q ss_pred             HHH---HHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHH
Q psy8763         227 PLH---CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLIL  303 (641)
Q Consensus       227 ~L~---~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l  303 (641)
                      +++   .|+..|+.+++++|+++|++++..+..|+||||+|+..+                         .++.+++++|
T Consensus       284 ~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~-------------------------~~~~eIVklL  338 (764)
T PHA02716        284 ILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH-------------------------NISTDIIKLL  338 (764)
T ss_pred             hhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh-------------------------CCCchHHHHH
Confidence            232   356777777777777777777777777777777664322                         1356777777


Q ss_pred             hhCCCcccccCCCCCcchHHHHHHH--------------hCcHHHHHHHHHhcCccccccccCCCChHHH----HHHcCC
Q psy8763         304 LQYKDMIDILQGGEHGRTALHIAAI--------------YDFDECARILVKDFGASLKRACSNGYYPIHD----AAKNAS  365 (641)
Q Consensus       304 l~~~~~~~~~~~~~~~~~~l~~a~~--------------~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~----a~~~~~  365 (641)
                      ++.|.  +++..+..|.||||.|+.              .++.+++++|+ ..|++++..+..|.||||.    |...+.
T Consensus       339 Le~GA--DIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL-~~GADIn~kn~~G~TPLh~y~~~a~n~~~  415 (764)
T PHA02716        339 HEYGN--DLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLI-SLGADITAVNCLGYTPLTSYICTAQNYMY  415 (764)
T ss_pred             HHcCC--CCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHH-HCCCCCCCcCCCCCChHHHHHHHHHhcCh
Confidence            77776  555666777777777654              36889999999 7899999999999999984    334567


Q ss_pred             hHHHHHHHhccccccCChHHHhHHHhhcCChH--HHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q psy8763         366 SKTMEVFLQFGESIGCSREEMISLFAAEGNLP--LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV  443 (641)
Q Consensus       366 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~--l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v  443 (641)
                      .+++++|++.++................+.++  +|.++..+..+...++.+...-.               .....+++
T Consensus       416 ~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~---------------~~~~~~v~  480 (764)
T PHA02716        416 YDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYD---------------STKIHDVY  480 (764)
T ss_pred             HHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhcc---------------ccccchhh
Confidence            89999999987643222221111112222222  44444444333322222111000               00111222


Q ss_pred             HHHHhcCCCccccccccCCCCCCcHHHHHHhcCCh-----hHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCH-----HH
Q psy8763         444 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC-----DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW-----KT  513 (641)
Q Consensus       444 ~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~-----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-----~~  513 (641)
                      ..++.     ....++..|..|+||||+|+..++.     +++++|+++|+++|.++..|+||||+|+++|+.     ++
T Consensus       481 ~~~ii-----~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eI  555 (764)
T PHA02716        481 HCAII-----ERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYI  555 (764)
T ss_pred             HHHHH-----hhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHH
Confidence            22221     1223566777888888888887765     445888888888888888888888888888765     88


Q ss_pred             HHHHHHcCCCccccccCCCchhHHHhhcC
Q psy8763         514 VLTLVRNKANILLKDINRRNILHLLVLNG  542 (641)
Q Consensus       514 v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  542 (641)
                      ++.|+++|++++..      .|+++....
T Consensus       556 vk~LL~~ga~~~~~------~l~~~~~~~  578 (764)
T PHA02716        556 VKNILDKRPNVDIV------IIFLDKCYA  578 (764)
T ss_pred             HHHHHhcCCCcchH------HHHHHhhhh
Confidence            88888888887665      255555444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.7e-46  Score=370.69  Aligned_cols=384  Identities=17%  Similarity=0.151  Sum_probs=301.9

Q ss_pred             hCCCHHHHHHHHHcC-CCCCcC-CCCCCcHHHHHHHc--CcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCc-
Q psy8763         162 HGGDFKAVELCLKSG-AKISTQ-QFDLSTPVHLACSQ--GALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR-  236 (641)
Q Consensus       162 ~~g~~~~v~~Ll~~g-~~~~~~-~~~~~t~l~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~-  236 (641)
                      ..++.++|++|++.| ++++.. +..|.||||.|+..  ++.+++++|+++|++     ++..+..|.||||+|+..|+ 
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD-----VN~kD~~G~TPLH~Aa~~g~~  225 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN-----VNLQNNHLITPLHTYLITGNV  225 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCCC
Confidence            568999999999999 999998 89999999998754  678999999999998     78999999999999999995 


Q ss_pred             -HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCC
Q psy8763         237 -CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQG  315 (641)
Q Consensus       237 -~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~  315 (641)
                       .++|++|+++|++++.++..|.|||++++..                        +..++.++++.+++.......   
T Consensus       226 ~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~------------------------a~n~~~EIvkiLie~~d~n~~---  278 (764)
T PHA02716        226 CASVIKKIIELGGDMDMKCVNGMSPIMTYIIN------------------------IDNINPEITNIYIESLDGNKV---  278 (764)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh------------------------hhccCHHHHHHHHHhcccccc---
Confidence             5899999999999999999999999988642                        234577888888876432111   


Q ss_pred             CCCcchHH---HHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHH--cCChHHHHHHHhccccccCChHHHhHHH
Q psy8763         316 GEHGRTAL---HIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAK--NASSKTMEVFLQFGESIGCSREEMISLF  390 (641)
Q Consensus       316 ~~~~~~~l---~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~  390 (641)
                       .....++   ..|+..|+.+++++|+ ..|++++..+..|.||||.|+.  .++.+++++|++.|+++        +..
T Consensus       279 -~~~~~~L~~~i~AA~~g~leiVklLL-e~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI--------N~k  348 (764)
T PHA02716        279 -KNIPMILHSYITLARNIDISVVYSFL-QPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL--------NEP  348 (764)
T ss_pred             -ccchhhhHHHHHHHHcCCHHHHHHHH-hCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC--------ccC
Confidence             1111223   3478889999999999 7899999999999999998764  45789999999999985        445


Q ss_pred             hhcCChHHHHHHh--------------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHH----HHHcCCHHHHHHHHhcCCC
Q psy8763         391 AAEGNLPLHSAVH--------------GGDFKAVELCLKSGAKISTQQFDLSTPVHL----ACSQGALDIVRLMFNLQPS  452 (641)
Q Consensus       391 ~~~~~t~l~~a~~--------------~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~----a~~~~~~~~v~~ll~~~~~  452 (641)
                      +..|.||||.|+.              .++.+++++|+++|++++.++..|.||||.    |...++.+++++|++.+..
T Consensus       349 D~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~  428 (764)
T PHA02716        349 DNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVL  428 (764)
T ss_pred             CCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcch
Confidence            6789999998865              368899999999999999999999999994    2345789999999985432


Q ss_pred             cccc------ccccCCCCCCcHHHHHHhcCCh------------------hHHHHHHHcCCCCCcCCCCCCCHHHHHHhc
Q psy8763         453 EKLV------CLNSTDAQKMTPLHCAAMFDRC------------------DVVQYLIDEGADLNVLDKEKRSPLLLAASR  508 (641)
Q Consensus       453 ~~~~------~~~~~~~~~~t~L~~A~~~~~~------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  508 (641)
                      ....      .++..+..+ .++|.++..++.                  +++..++..+.+++..+..|+||||+|+..
T Consensus       429 ~~~~~~~~q~ll~~~d~~~-~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~  507 (764)
T PHA02716        429 NMVKHRILQDLLIRVDDTP-CIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIIS  507 (764)
T ss_pred             hhhhhhhhhhhhhccCcch-hhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHc
Confidence            1000      011122222 224444443332                  334445556778888899999999999988


Q ss_pred             CCH-----HHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHH
Q psy8763         509 GGW-----KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLA  583 (641)
Q Consensus       509 ~~~-----~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  583 (641)
                      |+.     +++++|++.|+++|.+|.+|.||||+|+.+++..       ..+.++++.|+++|++++..      .|++|
T Consensus       508 g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~-------~~~~eIvk~LL~~ga~~~~~------~l~~~  574 (764)
T PHA02716        508 HTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLS-------GHQWYIVKNILDKRPNVDIV------IIFLD  574 (764)
T ss_pred             CCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCcc-------ccHHHHHHHHHhcCCCcchH------HHHHH
Confidence            776     4559999999999999999999999999888311       01448999999999888765      48999


Q ss_pred             HhcCCHHHHHHHHhcCCC
Q psy8763         584 ARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       584 ~~~~~~~~v~~Ll~~g~~  601 (641)
                      ..+++.+++.+|..+++.
T Consensus       575 ~~~~~~~~~~ll~~~~~~  592 (764)
T PHA02716        575 KCYANGKFPSLLLSEDDI  592 (764)
T ss_pred             hhhhhhHHHHHHHHcchh
Confidence            999999999999988875

>KOG0510|consensus

Probab=100.00  E-value=6.8e-47  Score=359.65  Aligned_cols=393  Identities=24%  Similarity=0.298  Sum_probs=268.2

Q ss_pred             CCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhh
Q psy8763          21 SGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKD  100 (641)
Q Consensus        21 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  100 (641)
                      +.-+++....+-.++.+.++..   |....+++..+  .....+..|.|++|.|+..++.      +++           
T Consensus        20 ~~~~~~~~~~d~~~~~~~~~~d---D~~tli~~kns--~~~~~~~~gd~~~~~~~~~~y~------~~~-----------   77 (929)
T KOG0510|consen   20 AKQDIRQPVADLDSQALADTLD---DRHTLILEKNS--STPGKRAFGDTELHHASARNYI------LSK-----------   77 (929)
T ss_pred             hhhhhhhhhHHHhHHHHHhhHH---HHHHHHHHhcc--ccchhhhhchhHHHHHHhhcch------hhh-----------
Confidence            3334445555555555555543   55555555443  2223345566666666666554      222           


Q ss_pred             cCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCC
Q psy8763         101 FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIS  180 (641)
Q Consensus       101 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~  180 (641)
                       -+.....|..+.+|||+|+.....+.+++|++.|+++        ...+.++.+|+|+|+..|..++.+.|+++|+|++
T Consensus        78 -~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~--------~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvn  148 (929)
T KOG0510|consen   78 -LAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADT--------PLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVN  148 (929)
T ss_pred             -hhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCC--------ChhhhhccCchhhccccchHHHHHHHHHhcCCcc
Confidence             2333445555666666666666666666666666665        3445556666666666666666666666666666


Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHc-CCCCCccCCCCCC
Q psy8763         181 TQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRS  259 (641)
Q Consensus       181 ~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~~t  259 (641)
                      ..+..+.||||.||..++.+..+.|++.+++     +...+..|.+|+|.|+..|..++.+.++.. |..          
T Consensus       149 l~de~~~TpLh~A~~~~~~E~~k~Li~~~a~-----~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~----------  213 (929)
T KOG0510|consen  149 LEDENGFTPLHLAARKNKVEAKKELINKGAD-----PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYE----------  213 (929)
T ss_pred             ccccCCCchhhHHHhcChHHHHHHHHhcCCC-----CCcccCcCCchHHHHHHhcchhhhhhhhccccch----------
Confidence            6666666666666666666655666666655     345555666666666666666666665551 100          


Q ss_pred             HHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHH
Q psy8763         260 PLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV  339 (641)
Q Consensus       260 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  339 (641)
                                                                    .+  ..++..+..+.+|||.|+..|+.+.++.++
T Consensus       214 ----------------------------------------------r~--~~in~~~n~~~~pLhlAve~g~~e~lk~~L  245 (929)
T KOG0510|consen  214 ----------------------------------------------RQ--THINFDNNEKATPLHLAVEGGDIEMLKMCL  245 (929)
T ss_pred             ----------------------------------------------hh--cccccccCCCCcchhhhhhcCCHHHHHHHH
Confidence                                                          00  022233344566666666666666666666


Q ss_pred             HhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCC
Q psy8763         340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK  419 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  419 (641)
                       +.+........+            ..              ....++++..|.+|.||||+|++.|..+.++.|+..|++
T Consensus       246 -~n~~~~a~~~~~------------~~--------------~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~  298 (929)
T KOG0510|consen  246 -QNGKKIADVQLD------------AM--------------QQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS  298 (929)
T ss_pred             -hCccccchhhhH------------HH--------------HHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc
Confidence             323222111000            00              012334667789999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCC---cCCC
Q psy8763         420 ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN---VLDK  496 (641)
Q Consensus       420 ~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~  496 (641)
                      ++.++.++.||||.|+..|+.++++.|++ .++  ....|..|-.|.||||.|++.|+.+++++|+++|+...   ..|.
T Consensus       299 I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~--~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~  375 (929)
T KOG0510|consen  299 INSKNKDEESPLHFAAIYGRINTVERLLQ-ESD--TRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADS  375 (929)
T ss_pred             ccccCCCCCCchHHHHHcccHHHHHHHHh-CcC--ccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccccccc
Confidence            99999999999999999999999999998 322  34478899999999999999999999999999999887   4599


Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHH
Q psy8763         497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL  537 (641)
Q Consensus       497 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  537 (641)
                      .|.||||.|+..|+..+|++|+.+|+++..+|+.|.+++++
T Consensus       376 dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  376 DGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             CCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccc
Confidence            99999999999999999999999999999999999999996

>KOG0510|consensus

Probab=100.00  E-value=1.5e-46  Score=357.38  Aligned_cols=371  Identities=31%  Similarity=0.441  Sum_probs=320.0

Q ss_pred             HHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy8763         166 FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID  245 (641)
Q Consensus       166 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~  245 (641)
                      .|.++++++....+..++..|.|++|.|+..+..      ++.-..     ....|..+.||||+|+.....+.+++|++
T Consensus        41 dD~~tli~~kns~~~~~~~~gd~~~~~~~~~~y~------~~~~~~-----~~a~D~~~n~~l~~a~~~~~~~~i~~Lls  109 (929)
T KOG0510|consen   41 DDRHTLILEKNSSTPGKRAFGDTELHHASARNYI------LSKLAI-----SYAKDSADNTPLHAAVEYNQGDKIQVLLS  109 (929)
T ss_pred             HHHHHHHHHhccccchhhhhchhHHHHHHhhcch------hhhhhh-----hhhhhcccCchhHHHhhcchHHHHHHHHh
Confidence            3778888888888888888999999999988865      111111     35567889999999999999999999999


Q ss_pred             cCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHH
Q psy8763         246 EGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHI  325 (641)
Q Consensus       246 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~  325 (641)
                      .|+++...+..+.+|+|+|+..+                           +.+.++.|++++.  +++..++.+.||||.
T Consensus       110 ~gad~~~~n~~~~aplh~A~~~~---------------------------~~s~L~~Ll~~~~--dvnl~de~~~TpLh~  160 (929)
T KOG0510|consen  110 YGADTPLRNLNKNAPLHLAADSG---------------------------NYSCLKLLLDYGA--DVNLEDENGFTPLHL  160 (929)
T ss_pred             cCCCCChhhhhccCchhhccccc---------------------------hHHHHHHHHHhcC--CccccccCCCchhhH
Confidence            99999988888888777776544                           8889999999995  777888899999999


Q ss_pred             HHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcC
Q psy8763         326 AAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG  405 (641)
Q Consensus       326 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  405 (641)
                      |+..++.|..+.|+ +.++++...+..+.+|+|.|++++..+..+.++.   .-+..+...+++.+..+.+|||.|+..|
T Consensus       161 A~~~~~~E~~k~Li-~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~---~~g~~r~~~in~~~n~~~~pLhlAve~g  236 (929)
T KOG0510|consen  161 AARKNKVEAKKELI-NKGADPCKSDIDGNFPIHEAARSGSKECMEIFLP---EHGYERQTHINFDNNEKATPLHLAVEGG  236 (929)
T ss_pred             HHhcChHHHHHHHH-hcCCCCCcccCcCCchHHHHHHhcchhhhhhhhc---cccchhhcccccccCCCCcchhhhhhcC
Confidence            99999999778888 8899999999999999999999999999999998   2234556668888999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHH
Q psy8763         406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI  485 (641)
Q Consensus       406 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  485 (641)
                      +.++++.+++.|........+            .....+.|           ++..|.+|.||||+|++.|+.+.++.|+
T Consensus       237 ~~e~lk~~L~n~~~~a~~~~~------------~~~q~kel-----------v~~~d~dg~tpLH~a~r~G~~~svd~Ll  293 (929)
T KOG0510|consen  237 DIEMLKMCLQNGKKIADVQLD------------AMQQEKEL-----------VNDEDNDGCTPLHYAARQGGPESVDNLL  293 (929)
T ss_pred             CHHHHHHHHhCccccchhhhH------------HHHHHHHH-----------hhcccccCCchHHHHHHcCChhHHHHHH
Confidence            999999999988765332111            11122222           5678999999999999999999999999


Q ss_pred             HcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHH-cC-CCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHh
Q psy8763         486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR-NK-ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLI  563 (641)
Q Consensus       486 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll  563 (641)
                      ..|++++.++.++.||||.|++.|+++.++.||+ .| ..+|..|..|.||||.|+.+|            +-++++.|+
T Consensus       294 ~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g------------H~~v~qlLl  361 (929)
T KOG0510|consen  294 GFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG------------HDRVVQLLL  361 (929)
T ss_pred             HcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC------------HHHHHHHHH
Confidence            9999999999999999999999999999999999 43 347888999999999999999            999999999


Q ss_pred             hcCCccc---ccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHH
Q psy8763         564 NLGACIN---LKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI  618 (641)
Q Consensus       564 ~~g~~~~---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~  618 (641)
                      ++|+...   ..|.+|.||||.|+.+|+..+|++|+.+|++   +..+|+.|+|++++
T Consensus       362 ~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~---I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  362 NKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGAD---IGVKNKKGKSAFDT  416 (929)
T ss_pred             hcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCc---eeeccccccccccc
Confidence            9999877   5699999999999999999999999999999   99999999999985

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-43  Score=346.34  Aligned_cols=332  Identities=20%  Similarity=0.291  Sum_probs=253.9

Q ss_pred             hhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCc
Q psy8763          35 VLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYY  114 (641)
Q Consensus        35 ~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t  114 (641)
                      .|..|+..|+++.++.|++.+.. .++..+..|.||||.|+..|+.++|++|+++            |++++..+..|.|
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~-~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~------------Ga~~n~~~~~~~t   70 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGN-CINISVDETTTPLIDAIRSGDAKIVELFIKH------------GADINHINTKIPH   70 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC------------CCCCCCCCCCCCC
Confidence            67889999999999999876542 3555667889999999999999999999988            8888888888999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHH
Q psy8763         115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC  194 (641)
Q Consensus       115 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~  194 (641)
                      |||.|+..|+.+++++|+++|+++..                  .+......++++.|++.|++++.++..|.||||+|+
T Consensus        71 ~L~~A~~~~~~~iv~~Ll~~g~~~~~------------------~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~  132 (434)
T PHA02874         71 PLLTAIKIGAHDIIKLLIDNGVDTSI------------------LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAI  132 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCc------------------chhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHH
Confidence            99999999999999999998877521                  122345678888999999998888888888888888


Q ss_pred             HcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCccccc
Q psy8763         195 SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNG  274 (641)
Q Consensus       195 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~  274 (641)
                      ..|+.+++++|++++++     ++..+..|.||||+|+..++.+++++|+++|++++..+..                  
T Consensus       133 ~~~~~~~v~~Ll~~gad-----~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~------------------  189 (434)
T PHA02874        133 KKGDLESIKMLFEYGAD-----VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN------------------  189 (434)
T ss_pred             HCCCHHHHHHHHhCCCC-----CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC------------------
Confidence            88888888888888877     5777888888888888888888888888888766533222                  


Q ss_pred             ccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCC
Q psy8763         275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY  354 (641)
Q Consensus       275 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  354 (641)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (434)
T PHA02874        190 --------------------------------------------------------------------------------  189 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy8763         355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA  434 (641)
Q Consensus       355 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a  434 (641)
                                                             |.||||.|+..|+.+++++|++.|++++..+..|.||||.|
T Consensus       190 ---------------------------------------g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A  230 (434)
T PHA02874        190 ---------------------------------------GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA  230 (434)
T ss_pred             ---------------------------------------CCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence                                                   23334444444445555555556666666666777777777


Q ss_pred             HHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcC-ChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcC-CHH
Q psy8763         435 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD-RCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG-GWK  512 (641)
Q Consensus       435 ~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~  512 (641)
                      +..+. +.+++|+.      +.+++.++..|.||||+|+..+ +.+++++|+++|++++.++..|.|||++|++.+ ..+
T Consensus       231 ~~~~~-~~i~~Ll~------~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~  303 (434)
T PHA02874        231 IIHNR-SAIELLIN------NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDP  303 (434)
T ss_pred             HHCCh-HHHHHHHc------CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccH
Confidence            76654 45566653      2336778888999999998865 678999999999999999999999999998876 677


Q ss_pred             HHHHHHHcCCCccccccCC-CchhHHHhhcCCCch
Q psy8763         513 TVLTLVRNKANILLKDINR-RNILHLLVLNGGGHI  546 (641)
Q Consensus       513 ~v~~Ll~~g~~~~~~~~~g-~t~l~~a~~~~~~~~  546 (641)
                      +++.|+.+++.++..+..+ .+++..+........
T Consensus       304 ~ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  338 (434)
T PHA02874        304 VIKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEF  338 (434)
T ss_pred             HHHHHHHhcCchhhccccchhHHHHHHHHhccchH
Confidence            8899999888776655544 445666555554433

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-43  Score=348.57  Aligned_cols=307  Identities=21%  Similarity=0.243  Sum_probs=273.7

Q ss_pred             hHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCC
Q psy8763         286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNAS  365 (641)
Q Consensus       286 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~  365 (641)
                      ..+..|+..|+.+.++.+++.+.. ..+..+..+.|||+.|+..|+.+++++|+ ..|++++..+..+.+||+.|+..++
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~-~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll-~~Ga~~n~~~~~~~t~L~~A~~~~~   80 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGN-CINISVDETTTPLIDAIRSGDAKIVELFI-KHGADINHINTKIPHPLLTAIKIGA   80 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            357889999999999999986553 34455677899999999999999999999 7899999999999999999999999


Q ss_pred             hHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy8763         366 SKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL  445 (641)
Q Consensus       366 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~  445 (641)
                      .+++++|+++|+++..                  .+......+++++|++.|++++..+..|.||||.|+..|+.+++++
T Consensus        81 ~~iv~~Ll~~g~~~~~------------------~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~  142 (434)
T PHA02874         81 HDIIKLLIDNGVDTSI------------------LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKM  142 (434)
T ss_pred             HHHHHHHHHCCCCCCc------------------chhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHH
Confidence            9999999999987431                  1233456789999999999999999999999999999999999999


Q ss_pred             HHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCcc
Q psy8763         446 MFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL  525 (641)
Q Consensus       446 ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  525 (641)
                      |++.+.     +++.++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus       143 Ll~~ga-----d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~  217 (434)
T PHA02874        143 LFEYGA-----DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM  217 (434)
T ss_pred             HHhCCC-----CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Confidence            999554     478889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcC-CHHHHHHHHhcCCCccc
Q psy8763         526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYG-RYNTVKKLLSSERGSFI  604 (641)
Q Consensus       526 ~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~g~~~~~  604 (641)
                      .++..|.||||.|+..+            . ..+++|+ .|++++.+|..|.||||+|+..+ +.+++++|+++|++   
T Consensus       218 ~~~~~g~TpL~~A~~~~------------~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad---  280 (434)
T PHA02874        218 NKCKNGFTPLHNAIIHN------------R-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD---  280 (434)
T ss_pred             CCCCCCCCHHHHHHHCC------------h-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC---
Confidence            99999999999999876            3 3555565 68999999999999999999876 78999999999999   


Q ss_pred             cccCCCCCChhHHHHHhhC-Ccceeeeceee
Q psy8763         605 INESDGEGLTPLHIASKEG-FHYSVSIFQVT  634 (641)
Q Consensus       605 ~~~~d~~g~t~l~~A~~~~-~~~~~~~l~~~  634 (641)
                      ++..|..|+|||++|+..+ ..++++.|+..
T Consensus       281 ~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~  311 (434)
T PHA02874        281 ISIKDNKGENPIDTAFKYINKDPVIKDIIAN  311 (434)
T ss_pred             CCCCCCCCCCHHHHHHHhCCccHHHHHHHHh
Confidence            8999999999999999987 56666666543

>KOG0508|consensus

Probab=100.00  E-value=6.2e-43  Score=311.55  Aligned_cols=192  Identities=20%  Similarity=0.300  Sum_probs=175.9

Q ss_pred             ccCCCcchhhHHHhcCCHHHHHHHHh-cCCccc------cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhh
Q psy8763          28 LNNKKQAVLHLATELNKVPILLILLQ-YKDMID------ILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKD  100 (641)
Q Consensus        28 ~~~~~~t~L~~A~~~g~~~~v~~ll~-~g~~~~------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  100 (641)
                      -+.+|.|||-.|+++|+.++|++|++ .++++.      .+-....|-+||..|+..||+++||.|+++           
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~-----------  106 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR-----------  106 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh-----------
Confidence            46788999999999999999999998 444332      233345788999999999999999999999           


Q ss_pred             cCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCC
Q psy8763         101 FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIS  180 (641)
Q Consensus       101 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~  180 (641)
                       |+++|....-..|||..||--|+.+++++|+++|+++        ++.|..|.|.||+||..|+.+++++|++.|+|+|
T Consensus       107 -ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~--------~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn  177 (615)
T KOG0508|consen  107 -GASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP--------EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN  177 (615)
T ss_pred             -cCccccccccCCccHHHHHhcchhHHHHHHHHcCCCC--------cccccCCCeeEEeeeccCchHHHHHHHHhCCCcc
Confidence             9999999888889999999999999999999999998        5779999999999999999999999999999999


Q ss_pred             cCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy8763         181 TQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID  245 (641)
Q Consensus       181 ~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~  245 (641)
                      .++..|.|+||.|+..|+.|++++|+.+++.      -..|..|.|||..|...|+.++|++|++
T Consensus       178 ~ks~kGNTALH~caEsG~vdivq~Ll~~ga~------i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  178 AKSYKGNTALHDCAESGSVDIVQLLLKHGAK------IDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hhcccCchHHHhhhhcccHHHHHHHHhCCce------eeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999999987      3456779999999999999999999997

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.8e-41  Score=340.18  Aligned_cols=118  Identities=20%  Similarity=0.296  Sum_probs=92.9

Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHH
Q psy8763         406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL--DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQY  483 (641)
Q Consensus       406 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~--~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~  483 (641)
                      ..++++.|++.|++++.++..|.||||.|+..++.  .+++.|++.     +.+++.+|..|.||||+|+..|+.+++++
T Consensus       201 ~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~-----g~din~~d~~g~TpLh~A~~~~~~~~v~~  275 (471)
T PHA03095        201 RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA-----GISINARNRYGQTPLHYAAVFNNPRACRR  275 (471)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            34556666677777777777777888887777754  466777763     44577888888888888888888888888


Q ss_pred             HHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccc
Q psy8763         484 LIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD  528 (641)
Q Consensus       484 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  528 (641)
                      |+++|++++.++..|+||||+|+..++.++++.|++++++++...
T Consensus       276 LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~  320 (471)
T PHA03095        276 LIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVA  320 (471)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHH
Confidence            888888888888888888888888888888888888888876554

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-41  Score=341.34  Aligned_cols=292  Identities=25%  Similarity=0.358  Sum_probs=250.3

Q ss_pred             cCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHH---
Q psy8763          42 LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD---  118 (641)
Q Consensus        42 ~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~---  118 (641)
                      ....++++++++.+.  ..+..+..+.||||.|+..|+.++|++|+++            |++++..+..+.||||.   
T Consensus        12 ~~~~~~~~~~~~~~~--~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~------------g~~~~~~~~~~~t~L~~~~~   77 (480)
T PHA03100         12 IIKVKNIKYIIMEDD--LNDYSYKKPVLPLYLAKEARNIDVVKILLDN------------GADINSSTKNNSTPLHYLSN   77 (480)
T ss_pred             HHHHHHHHHHHhcCc--cchhhhcccchhhhhhhccCCHHHHHHHHHc------------CCCCCCccccCcCHHHHHHH
Confidence            345688889998774  3345578899999999999999999999998            99999999999999999   


Q ss_pred             --HHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHH--hCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHH
Q psy8763         119 --AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV--HGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC  194 (641)
Q Consensus       119 --A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~  194 (641)
                        |+..|+.+++++|+++|+++        +..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+
T Consensus        78 ~~a~~~~~~~iv~~Ll~~ga~i--------~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~  149 (480)
T PHA03100         78 IKYNLTDVKEIVKLLLEYGANV--------NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL  149 (480)
T ss_pred             HHHHhhchHHHHHHHHHCCCCC--------CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence              99999999999999999987        456888999999999  999999999999999999999999999999999


Q ss_pred             HcC--cHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCccc
Q psy8763         195 SQG--ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT  272 (641)
Q Consensus       195 ~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  272 (641)
                      ..|  +.+++++|++++++     ++..+..|.||||+|+..|+.+++++|+++|++++..+..+.++.+.         
T Consensus       150 ~~~~~~~~iv~~Ll~~g~d-----in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~---------  215 (480)
T PHA03100        150 ESNKIDLKILKLLIDKGVD-----INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIF---------  215 (480)
T ss_pred             HcCCChHHHHHHHHHCCCC-----cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHH---------
Confidence            999  99999999999988     67788899999999999999999999999999888766555443321         


Q ss_pred             ccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccC
Q psy8763         273 NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSN  352 (641)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  352 (641)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (480)
T PHA03100        216 --------------------------------------------------------------------------------  215 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy8763         353 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  432 (641)
Q Consensus       353 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  432 (641)
                                                                                                 .||||
T Consensus       216 ---------------------------------------------------------------------------~t~l~  220 (480)
T PHA03100        216 ---------------------------------------------------------------------------ETPLH  220 (480)
T ss_pred             ---------------------------------------------------------------------------HhHHH
Confidence                                                                                       34555


Q ss_pred             HHHHcCC--HHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCC
Q psy8763         433 LACSQGA--LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG  510 (641)
Q Consensus       433 ~a~~~~~--~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  510 (641)
                      .|+..++  .+++++|++.     +.+++.+|..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++
T Consensus       221 ~a~~~~~~~~~iv~~Ll~~-----g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~  295 (480)
T PHA03100        221 IAACYNEITLEVVNYLLSY-----GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN  295 (480)
T ss_pred             HHHHhCcCcHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCC
Confidence            5555555  5555555552     22355667779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcccccc
Q psy8763         511 WKTVLTLVRNKANILLKDI  529 (641)
Q Consensus       511 ~~~v~~Ll~~g~~~~~~~~  529 (641)
                      .+++++|+++|++++..+.
T Consensus       296 ~~iv~~Ll~~g~~i~~i~~  314 (480)
T PHA03100        296 KEIFKLLLNNGPSIKTIIE  314 (480)
T ss_pred             HHHHHHHHhcCCCHHHHHH
Confidence            9999999999999876543

>KOG0508|consensus

Probab=100.00  E-value=7.9e-42  Score=304.51  Aligned_cols=523  Identities=19%  Similarity=0.233  Sum_probs=303.2

Q ss_pred             HHHhcCCHHHHHHHHhcCCc---cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC-cchhHhhhcCCCcccCCCCCC
Q psy8763          38 LATELNKVPILLILLQYKDM---IDILQGGEHGRTALHIAAIYDFDECARILVSEQPE-CDWIMVKDFGASLKRACSNGY  113 (641)
Q Consensus        38 ~A~~~g~~~~v~~ll~~g~~---~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~-~~~~~~~~~g~~~~~~~~~g~  113 (641)
                      .|++.|.+..+..|+.....   .+.-....+|.|||-+||++||.++|++|+++... ....    .....+-...+|.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~----GsV~FDge~Iega   85 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQG----GSVRFDGETIEGA   85 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCC----ceEEeCCcccCCC
Confidence            67888888888888765432   12223346789999999999999999999996311 0000    0122223356788


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHH
Q psy8763         114 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA  193 (641)
Q Consensus       114 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A  193 (641)
                      +||..|+..|+.++|+.|+++|+++|.        ......|||-.||.-|++++||+|+++|+|++..|..|.|.|++|
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~VN~--------tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa  157 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASVND--------TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIA  157 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCcccc--------ccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEee
Confidence            999999999999999999999999853        455667999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccc
Q psy8763         194 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTN  273 (641)
Q Consensus       194 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  273 (641)
                      |..|+.+|+++|++.+++     ++.++..|.|+||.+++.|+.+++++|+++|+.+.. |..|.|||..|..+|     
T Consensus       158 ~ykGh~~I~qyLle~gAD-----vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG-----  226 (615)
T KOG0508|consen  158 CYKGHVDIAQYLLEQGAD-----VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTG-----  226 (615)
T ss_pred             eccCchHHHHHHHHhCCC-----cchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhc-----
Confidence            999999999999999999     799999999999999999999999999999998764 455888887776655     


Q ss_pred             cccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHH-HhC--cHH---HHHHHH---HhcCc
Q psy8763         274 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA-IYD--FDE---CARILV---KDFGA  344 (641)
Q Consensus       274 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~-~~~--~~~---~~~~Ll---~~~~~  344 (641)
                                            ..+++.+|++...+      ......++..-- ...  ..+   .+++..   +..-.
T Consensus       227 ----------------------~~~iVe~L~~~~~s------r~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~  278 (615)
T KOG0508|consen  227 ----------------------HTDIVERLLQCETS------RESRIEALELLGATYVDKKRDLLGALKYWRRAMEERES  278 (615)
T ss_pred             ----------------------chHHHHHHhcCCcc------hhhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhh
Confidence                                  77777777752220      000111111100 000  001   111111   00000


Q ss_pred             ccc-ccccCCCChHH---HHHHcCChHHHHHHHhccccccC----ChHHHhHHHhhcCChHH--HHH--HhcCCHHHHHH
Q psy8763         345 SLK-RACSNGYYPIH---DAAKNASSKTMEVFLQFGESIGC----SREEMISLFAAEGNLPL--HSA--VHGGDFKAVEL  412 (641)
Q Consensus       345 ~~~-~~~~~~~~~l~---~a~~~~~~~~~~~ll~~~~~~~~----~~~~~~~~~~~~~~t~l--~~a--~~~~~~~~~~~  412 (641)
                      +.+ ........|.+   +.....+.+-++.|...-.....    .+..++.....+-..++  .-|  +..|.++-.--
T Consensus       279 ~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~  358 (615)
T KOG0508|consen  279 DGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIR  358 (615)
T ss_pred             ccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHH
Confidence            100 00011112211   11222233333333221000000    00000000000000000  001  11222222222


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcC--CC
Q psy8763         413 CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG--AD  490 (641)
Q Consensus       413 Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g--~~  490 (641)
                      |+++-.+.-..+-.--+|.....-...-+++.+++........  .  ...-+..-++.....+-.|+=+-+-.-+  .+
T Consensus       359 LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~mL~d~~~~g~--~--~~~i~~~~~~~Vl~k~vlEvEra~~~t~~p~d  434 (615)
T KOG0508|consen  359 LWKYALDMQQKNLEPLSPMTASSLLSFAELFSFMLQDFAAKGS--L--GTQIGFDDLMGVLTKSVLEVERALALTREPLD  434 (615)
T ss_pred             HHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHHhhhhhhcCC--C--CCccchHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            2222111111100001111111111122444444432111000  0  0011112222222222233322222111  22


Q ss_pred             CCcCCCCCCCHHHHHHhcCCH-----------HHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhH-HHHHHHHHH
Q psy8763         491 LNVLDKEKRSPLLLAASRGGW-----------KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF-AEEVAAVFL  558 (641)
Q Consensus       491 ~~~~~~~g~t~L~~A~~~~~~-----------~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~-~~~~~~~~~  558 (641)
                      ++..++.-.+.||+.+.....           ..+.-|+    ....+-+.|.||||+|+....+..... .-...+..+
T Consensus       435 ~~~~~k~l~~~lhLv~llek~~ct~e~~~~k~~~iyrl~----~l~pr~~~~ft~LH~av~~~tt~~gry~v~~fPs~~V  510 (615)
T KOG0508|consen  435 PAQYNKALYIILHLVCLLEKVECTPEQDHLKHQTIYRLL----KLAPRGKNGFTLLHLAVDKNTTNVGRYPVCRFPSAHV  510 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH----hccccccCCCchhhhhhccCCCCCCcccccCCcHHHH
Confidence            222222333445544422211           1111121    133466889999999998876543332 123347789


Q ss_pred             HHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhh
Q psy8763         559 GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE  622 (641)
Q Consensus       559 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~  622 (641)
                      ++.|++.|+|+|++|.+|.||||+|+++....++..|++.|+.   .+..|..|+|+++.-.+.
T Consensus       511 ~k~Llecgadvna~D~~~ntplHIa~~~~~~si~~aLie~Gah---~datN~~~~t~~~ll~~~  571 (615)
T KOG0508|consen  511 TKVLLECGADVNARDFDNNTPLHIAAQNNCPSIVNALIEAGAH---LDATNAHKKTALDLLDEK  571 (615)
T ss_pred             HHHHHHcCCCCCcccCCCCchhHHHHHhccHHHHHHHHHcccc---hhhhhhccccHHHHhchh
Confidence            9999999999999999999999999999999999999999999   899999999999865443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=343.37  Aligned_cols=283  Identities=23%  Similarity=0.313  Sum_probs=144.4

Q ss_pred             HHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhC---cHHHHHHHHHhcCccccccccCCCChHHHHHHcC-Ch
Q psy8763         291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD---FDECARILVKDFGASLKRACSNGYYPIHDAAKNA-SS  366 (641)
Q Consensus       291 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~-~~  366 (641)
                      +....+.+++++|++.+.  +++..+..|.||||.|+..+   ..+++++|+ +.|++++..+..|.||||+|+..+ ..
T Consensus        21 ~~~~~~~~~v~~Ll~~ga--~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll-~~Gadin~~~~~g~TpLh~A~~~~~~~   97 (471)
T PHA03095         21 NASNVTVEEVRRLLAAGA--DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLL-EAGADVNAPERCGFTPLHLYLYNATTL   97 (471)
T ss_pred             cCCCCCHHHHHHHHHcCC--CcccCCCCCCCHHHHHHHhcCCChHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCcH
Confidence            334444555555555554  33344444555555555554   555555555 445555555555555555555555 35


Q ss_pred             HHHHHHHhccccccCChHHHhHHHhhcCChHHHHHH--hcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHH
Q psy8763         367 KTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAV--HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG--ALDI  442 (641)
Q Consensus       367 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~--~~~~  442 (641)
                      +++++|+++|++++        ..+..|.||||.|+  ..++.+++++|++.|++++..+..|.||||.|+..+  +.++
T Consensus        98 ~iv~lLl~~ga~in--------~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~i  169 (471)
T PHA03095         98 DVIKLLIKAGADVN--------AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVEL  169 (471)
T ss_pred             HHHHHHHHcCCCCC--------CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHH
Confidence            55555555555432        23344555555555  233445555555555555555555555555554433  3455


Q ss_pred             HHHHHhcCCCccccccccCCCCCCcHHHHHHhc--CChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCH--HHHHHHH
Q psy8763         443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF--DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW--KTVLTLV  518 (641)
Q Consensus       443 v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll  518 (641)
                      +++|++.+..     ++..+..|.||||+++..  +..++++.|+++|++++.++..|+||||+|+..++.  .+++.|+
T Consensus       170 v~~Ll~~g~~-----~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll  244 (471)
T PHA03095        170 LRLLIDAGAD-----VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL  244 (471)
T ss_pred             HHHHHHcCCC-----CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHH
Confidence            5555553322     333344555555555432  344555555555555555555555555555554432  3444555


Q ss_pred             HcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhc
Q psy8763         519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS  598 (641)
Q Consensus       519 ~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  598 (641)
                      +.|++++.+|..|.||||+|+..+            ..+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.
T Consensus       245 ~~g~din~~d~~g~TpLh~A~~~~------------~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~  312 (471)
T PHA03095        245 IAGISINARNRYGQTPLHYAAVFN------------NPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAK  312 (471)
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcC------------CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHh
Confidence            555555555555555555555555            45555555555555555555555555555555555555555555


Q ss_pred             CCC
Q psy8763         599 ERG  601 (641)
Q Consensus       599 g~~  601 (641)
                      +++
T Consensus       313 ~~~  315 (471)
T PHA03095        313 NPS  315 (471)
T ss_pred             CCC
Confidence            554

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=322.36  Aligned_cols=430  Identities=13%  Similarity=0.054  Sum_probs=305.9

Q ss_pred             HHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCC-HHHHHHHHHcCCCCCcCCCCCCcHHHH-HHHcCcHHHHHHH
Q psy8763         128 MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGD-FKAVELCLKSGAKISTQQFDLSTPVHL-ACSQGALDIVRLM  205 (641)
Q Consensus       128 v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~~t~l~~-A~~~g~~~iv~~L  205 (641)
                      .+.|++.|+++         .....+.|||+.-..+.+ ..-++.++..|.+++..+.++.+++|+ |+..|+.|+|++|
T Consensus        21 ~~~l~~~g~~~---------~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~L   91 (631)
T PHA02792         21 AQSLIESGANP---------LYEYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLL   91 (631)
T ss_pred             HHHHHHcCCCc---------ccccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHH
Confidence            67899999997         235677899998765444 445567777888899999999999976 6678999999999


Q ss_pred             HhcCCCccccccccCCCCCCcHHHHHHh-cCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCc
Q psy8763         206 FNLQPSEKLVCLNSTDAQKMTPLHCAAM-FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK  284 (641)
Q Consensus       206 l~~~~~~~~~~~~~~~~~~~t~L~~A~~-~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~  284 (641)
                      +++|++     ++.++..+.+|+++|+. .++.+++++|+++|++++..+..|.||+...+.+...-             
T Consensus        92 I~~GAd-----vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~-------------  153 (631)
T PHA02792         92 ISKGLE-----INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYY-------------  153 (631)
T ss_pred             HHcCCC-----cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccccccc-------------
Confidence            999998     68888889999999965 69999999999999999988999999998765443110             


Q ss_pred             hhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhC-------cHHHHHHHHHhcCccccccccCCCChH
Q psy8763         285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD-------FDECARILVKDFGASLKRACSNGYYPI  357 (641)
Q Consensus       285 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~-------~~~~~~~Ll~~~~~~~~~~~~~~~~~l  357 (641)
                                   +.-..+-+..-.-.++..+..|.||||+++.++       +.++++.|+ .+|++++..+..|.|||
T Consensus       154 -------------~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li-~~g~~~~~~d~~g~t~l  219 (631)
T PHA02792        154 -------------NWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLI-SHEKEMRYYTYREHTTL  219 (631)
T ss_pred             -------------chhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHH-hCCCCcCccCCCCChHH
Confidence                         000000000000122344566899999999888       789999999 88999998998999999


Q ss_pred             HHHHHcC--ChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhc--CCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy8763         358 HDAAKNA--SSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG--GDFKAVELCLKSGAKISTQQFDLSTPVHL  433 (641)
Q Consensus       358 ~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~--~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~  433 (641)
                      |+|+.+.  ..++++.|++...+.......+.+.....      +-...  -+..++..|++.+......        ..
T Consensus       220 ~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~------~~~~~~~id~~iv~~ll~~~~~~~i~--------~~  285 (631)
T PHA02792        220 YYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQ------YRNKNHKIDNYIVDKLLSGHDTFYIL--------EL  285 (631)
T ss_pred             HHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHH------hccCccCccHHHHHHHHhCCCccchh--------hh
Confidence            9999988  78899999884322211111111100000      00011  2345888888876532211        11


Q ss_pred             HHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcC--ChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCH
Q psy8763         434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD--RCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW  511 (641)
Q Consensus       434 a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  511 (641)
                      .....+.+.+..++....           ..-+..||.-...+  +.+++++|+++|+++.  ......+++.|+..++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~-----------~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~  352 (631)
T PHA02792        286 CNSLRNNIIISSILKRYT-----------DSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDP  352 (631)
T ss_pred             hhhhhhhhHHHHHHHHHh-----------HHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCH
Confidence            111111122222222100           01223455555555  5689999999999875  23356678899999999


Q ss_pred             HHHHHHHHcCCCccccccCC--CchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCH
Q psy8763         512 KTVLTLVRNKANILLKDINR--RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRY  589 (641)
Q Consensus       512 ~~v~~Ll~~g~~~~~~~~~g--~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  589 (641)
                      +++++|+++|++++.+|.+|  .||||.|.......         ..+++++|+++|+|+|.+|..|.||||+|+..++.
T Consensus       353 eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~---------v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~  423 (631)
T PHA02792        353 KVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESD---------VLSILKLCKPYIDDINKIDKHGRSILYYCIESHSV  423 (631)
T ss_pred             HHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHh---------HHHHHHHHHhcCCccccccccCcchHHHHHHcCCH
Confidence            99999999999999988775  58899876655211         34578899999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccccccCCCCCChhHHHHHh----------hCCcceeeeceeeeec
Q psy8763         590 NTVKKLLSSERGSFIINESDGEGLTPLHIASK----------EGFHYSVSIFQVTYVW  637 (641)
Q Consensus       590 ~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~----------~~~~~~~~~l~~~~~~  637 (641)
                      +++++|+++|++   ++..|..|+|||++|+.          ....+++++|+++.|.
T Consensus       424 eivelLLs~GAD---IN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        424 SLVEWLIDNGAD---INITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             HHHHHHHHCCCC---CCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999   89999999999999976          2224567777776543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.8e-41  Score=337.73  Aligned_cols=277  Identities=22%  Similarity=0.238  Sum_probs=252.6

Q ss_pred             cHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHH-----HHhcC
Q psy8763         331 FDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHS-----AVHGG  405 (641)
Q Consensus       331 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~-----a~~~~  405 (641)
                      ..+++++++ ..+...+..+..+.||||.|+..++.+++++|++.|++++        ..+..+.+|+|.     |+..+
T Consensus        14 ~~~~~~~~~-~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~--------~~~~~~~t~L~~~~~~~a~~~~   84 (480)
T PHA03100         14 KVKNIKYII-MEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN--------SSTKNNSTPLHYLSNIKYNLTD   84 (480)
T ss_pred             HHHHHHHHH-hcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC--------CccccCcCHHHHHHHHHHHhhc
Confidence            346667777 4455556667788888888888888888999998888754        334567889999     99999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcC--ChhHH
Q psy8763         406 DFKAVELCLKSGAKISTQQFDLSTPVHLAC--SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD--RCDVV  481 (641)
Q Consensus       406 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~--~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~v  481 (641)
                      +.+++++|++.|++++..+..|.||||.|+  ..|+.+++++|++.+.     +++..+..|.||||+|+..+  +.+++
T Consensus        85 ~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~~iv  159 (480)
T PHA03100         85 VKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGA-----NVNIKNSDGENLLHLYLESNKIDLKIL  159 (480)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCC-----CCCccCCCCCcHHHHHHHcCCChHHHH
Confidence            999999999999999999999999999999  9999999999999554     47888999999999999999  99999


Q ss_pred             HHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCC------CchhHHHhhcCCCchhhHHHHHHH
Q psy8763         482 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR------RNILHLLVLNGGGHIKEFAEEVAA  555 (641)
Q Consensus       482 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g------~t~l~~a~~~~~~~~~~~~~~~~~  555 (641)
                      ++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|      .||||.|+..+            .
T Consensus       160 ~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~------------~  227 (480)
T PHA03100        160 KLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYN------------E  227 (480)
T ss_pred             HHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhC------------c
Confidence            99999999999999999999999999999999999999999999999988      89999999999            7


Q ss_pred             --HHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeecee
Q psy8763         556 --VFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       556 --~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                        .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++   ++..|..|.||+++|+..++.+++++|++
T Consensus       228 ~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad---~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~  304 (480)
T PHA03100        228 ITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN---PNLVNKYGDTPLHIAILNNNKEIFKLLLN  304 (480)
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence              9999999999999999999999999999999999999999999998   89999999999999999999999999988


Q ss_pred             eee
Q psy8763         634 TYV  636 (641)
Q Consensus       634 ~~~  636 (641)
                      +.+
T Consensus       305 ~g~  307 (480)
T PHA03100        305 NGP  307 (480)
T ss_pred             cCC
Confidence            754

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.3e-39  Score=321.98  Aligned_cols=93  Identities=15%  Similarity=0.197  Sum_probs=80.1

Q ss_pred             ccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHH
Q psy8763         149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL  228 (641)
Q Consensus       149 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L  228 (641)
                      .+..+.||||+|+..|+.++|++|++.|++++.++..|.||||+||..|+.++++.|++.+...     ..  ..+.+|+
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-----~~--~~~~~~l  105 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC-----SV--FYTLVAI  105 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc-----cc--ccchhhH
Confidence            3456789999999999999999999999999999999999999999999999999999876552     11  4667899


Q ss_pred             HHHHhcCcHHHHHHHHHcCC
Q psy8763         229 HCAAMFDRCDVVQYLIDEGA  248 (641)
Q Consensus       229 ~~A~~~~~~~iv~~Ll~~g~  248 (641)
                      +.|+..++.+++++|+..+.
T Consensus       106 ~~a~~~~~~ei~~~Ll~~~~  125 (477)
T PHA02878        106 KDAFNNRNVEIFKIILTNRY  125 (477)
T ss_pred             HHHHHcCCHHHHHHHHhCcc
Confidence            99999999999999988754

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-38  Score=303.26  Aligned_cols=443  Identities=13%  Similarity=0.072  Sum_probs=302.0

Q ss_pred             chhhHHHhcCCHH--HHHHHHhcCCccccccCCCCCchHHHHHHHcCCH-HHHHHHHhcCCCcchhHhhhcCCCcccCCC
Q psy8763          34 AVLHLATELNKVP--ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD-ECARILVSEQPECDWIMVKDFGASLKRACS  110 (641)
Q Consensus        34 t~L~~A~~~g~~~--~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~  110 (641)
                      ..|.-.|+.=+++  -.+.|+++|+.+-.   ..+|.||||.-..+.+. .-++.++.-            +.+++..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~n~   69 (631)
T PHA02792          5 KILYDSCKTFNIDACSAQSLIESGANPLY---EYDGETPLKAYVTKKNNNIKNDVVILL------------LSSVDYKNI   69 (631)
T ss_pred             hHHHhHhhccchhHHHHHHHHHcCCCccc---ccCCCccHHHHHhhhhhhHHHHHHHHH------------HhCCCcCcc
Confidence            3444444433333  35678999986543   36677999988666552 334445444            666778888


Q ss_pred             CCCcHHHH-HHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHh-CCCHHHHHHHHHcCCCCCcCCCCCCc
Q psy8763         111 NGYYPIHD-AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVH-GGDFKAVELCLKSGAKISTQQFDLST  188 (641)
Q Consensus       111 ~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~~t  188 (641)
                      +|.+|+|+ |..+|+.|+|++|+++||+++        ..+..+.+|+++|+. .++.++|++|+++|+++...+..|.|
T Consensus        70 ~~~~~~~~~~s~n~~lElvk~LI~~GAdvN--------~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~  141 (631)
T PHA02792         70 NDFDIFEYLCSDNIDIELLKLLISKGLEIN--------SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYK  141 (631)
T ss_pred             CCccHHHHHHHhcccHHHHHHHHHcCCCcc--------cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcc
Confidence            89999986 556889999999999999984        456668899999965 68999999999999998888889999


Q ss_pred             HHHHHHHcCcH-HHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcC-------cHHHHHHHHHcCCCCCccCCCCCCH
Q psy8763         189 PVHLACSQGAL-DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD-------RCDVVQYLIDEGADLNVLDKEKRSP  260 (641)
Q Consensus       189 ~l~~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~-------~~~iv~~Ll~~g~~~~~~~~~~~t~  260 (641)
                      |+..-+..... +.-..+-+   .+-.-.++..+..|.||||+|+.++       +.++++.|+++|++++..+..|.||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~  218 (631)
T PHA02792        142 IIIEQITRAEYYNWDDELDD---YDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTT  218 (631)
T ss_pred             hhhhhcccccccchhhhccc---cccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChH
Confidence            98876543211 11111000   0000014677788999999999998       8999999999999999999999988


Q ss_pred             HHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHH--HHh----C--cH
Q psy8763         261 LLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIA--AIY----D--FD  332 (641)
Q Consensus       261 l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a--~~~----~--~~  332 (641)
                      ||+++.+...                         +.++++.|++...  ..    ......|..=  .+.    +  +.
T Consensus       219 l~~~~~~~~i-------------------------~~ei~~~L~~~~~--~~----~~~~~~l~~y~~~~~~~~~~~id~  267 (631)
T PHA02792        219 LYYYVDKCDI-------------------------KREIFDALFDSNY--SG----NELMNILSNYLRKQYRNKNHKIDN  267 (631)
T ss_pred             HHHHHHcccc-------------------------hHHHHHHHHhccc--cc----cchHhHHHHHHHHHhccCccCccH
Confidence            8888766521                         4567777766321  10    1111222211  111    1  22


Q ss_pred             HHHHHHHHhcCccccccccCCCChHHHHHH--cCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcC--CHH
Q psy8763         333 ECARILVKDFGASLKRACSNGYYPIHDAAK--NASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG--DFK  408 (641)
Q Consensus       333 ~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~  408 (641)
                      .++..|++. +-..+         +..++.  .....+...|....               ..-+..|+.-...+  +.+
T Consensus       268 ~iv~~ll~~-~~~~~---------i~~~~~~~~~~~~~~~~~~~~~---------------~~~q~~l~~Yl~~~~v~ie  322 (631)
T PHA02792        268 YIVDKLLSG-HDTFY---------ILELCNSLRNNIIISSILKRYT---------------DSIQDLLSEYVSYHTVYIN  322 (631)
T ss_pred             HHHHHHHhC-CCccc---------hhhhhhhhhhhhHHHHHHHHHh---------------HHHHHHHHHHHhcCCccHH
Confidence            366666621 11000         111110  01111111111110               11122445555555  789


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCC--CcHHHHHHhcCCh---hHHHH
Q psy8763         409 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQK--MTPLHCAAMFDRC---DVVQY  483 (641)
Q Consensus       409 ~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~--~t~L~~A~~~~~~---~~v~~  483 (641)
                      ++++|+++|++...  .....+++.|+..++.+++++|+++|.     +++..|..|  .||||.|......   +++++
T Consensus       323 iIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GA-----DIN~kD~~g~~~TpLh~A~~n~~~~v~~Ilkl  395 (631)
T PHA02792        323 VIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGN-----VVVEDDDNIINIMPLFPTLSIHESDVLSILKL  395 (631)
T ss_pred             HHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCC-----chhhhcCCCCChhHHHHHHHhccHhHHHHHHH
Confidence            99999999998752  234567889999999999999999554     477777664  6999998776654   46899


Q ss_pred             HHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhc---CCCchhhHHHHHHHHHHHH
Q psy8763         484 LIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN---GGGHIKEFAEEVAAVFLGE  560 (641)
Q Consensus       484 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~---~~~~~~~~~~~~~~~~~~~  560 (641)
                      |+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.++..|.|||++|+..   +...+.+.     ..++++
T Consensus       396 LIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~-----~~~il~  470 (631)
T PHA02792        396 CKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAEL-----YIKILE  470 (631)
T ss_pred             HHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHH-----HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999862   22222222     456899


Q ss_pred             HHhhcCCccc
Q psy8763         561 NLINLGACIN  570 (641)
Q Consensus       561 ~Ll~~g~~~~  570 (641)
                      .|+++|.++.
T Consensus       471 lLLs~~p~i~  480 (631)
T PHA02792        471 IILSKLPTIE  480 (631)
T ss_pred             HHHhcCCChh
Confidence            9999997664

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.6e-39  Score=320.83  Aligned_cols=281  Identities=20%  Similarity=0.172  Sum_probs=213.0

Q ss_pred             CCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCCh
Q psy8763         317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNL  396 (641)
Q Consensus       317 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t  396 (641)
                      ..+.+|||.|+..|+.+++++|+ ..|++++..+..|.||||.|+..++.+.++.|++.+.....          ..+.+
T Consensus        35 ~~~~tPLh~A~~~g~~e~vk~Ll-~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----------~~~~~  103 (477)
T PHA02878         35 LIPFIPLHQAVEARNLDVVKSLL-TRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----------FYTLV  103 (477)
T ss_pred             ccCcchHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----------ccchh
Confidence            45678888888888888888888 67888888888888888888888888888888886654321          34567


Q ss_pred             HHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCccccccccCCCC-CCcHHHHHH
Q psy8763         397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG--ALDIVRLMFNLQPSEKLVCLNSTDAQ-KMTPLHCAA  473 (641)
Q Consensus       397 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~--~~~~v~~ll~~~~~~~~~~~~~~~~~-~~t~L~~A~  473 (641)
                      +++.|+..++.+++++|+..+.+..... . ...+......+  ..+++++|++.+     .+++..+.. |.||||+|+
T Consensus       104 ~l~~a~~~~~~ei~~~Ll~~~~~~~~~~-~-~~~~~~~~~~~~~~~~iv~~Ll~~g-----adin~~~~~~g~tpLh~A~  176 (477)
T PHA02878        104 AIKDAFNNRNVEIFKIILTNRYKNIQTI-D-LVYIDKKSKDDIIEAEITKLLLSYG-----ADINMKDRHKGNTALHYAT  176 (477)
T ss_pred             hHHHHHHcCCHHHHHHHHhCcccCcccC-c-HHHHhhccchhhHHHHHHHHHHHcC-----CCCCccCCCCCCCHHHHHH
Confidence            8888888888888888887754432111 0 01111111112  245888888744     447777777 888888888


Q ss_pred             hcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhc-CCCchhhHHHH
Q psy8763         474 MFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN-GGGHIKEFAEE  552 (641)
Q Consensus       474 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~  552 (641)
                      ..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+.. +          
T Consensus       177 ~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~----------  246 (477)
T PHA02878        177 ENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK----------  246 (477)
T ss_pred             hCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcC----------
Confidence            88888888888888888888888888888888888888888888888888888888888888888865 4          


Q ss_pred             HHHHHHHHHHhhcCCcccccCC-CCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhC-Ccceeee
Q psy8763         553 VAAVFLGENLINLGACINLKNN-SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG-FHYSVSI  630 (641)
Q Consensus       553 ~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~-~~~~~~~  630 (641)
                        +.+++++|+++|++++.++. .|.||||+|  .++.+++++|+++|++   ++..|..|.|||++|+..+ ..+++++
T Consensus       247 --~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gad---in~~d~~g~TpL~~A~~~~~~~~~~~~  319 (477)
T PHA02878        247 --DYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGAD---INSLNSYKLTPLSSAVKQYLCINIGRI  319 (477)
T ss_pred             --CHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHHcCccchHHH
Confidence              67888888888888888775 788888888  4667888888888888   7888888888888888754 3455555


Q ss_pred             ce
Q psy8763         631 FQ  632 (641)
Q Consensus       631 l~  632 (641)
                      |.
T Consensus       320 li  321 (477)
T PHA02878        320 LI  321 (477)
T ss_pred             HH
Confidence            54

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.8e-39  Score=288.82  Aligned_cols=234  Identities=17%  Similarity=0.189  Sum_probs=205.8

Q ss_pred             ccCCCceeeeccCCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHH
Q psy8763           8 SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV   87 (641)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll   87 (641)
                      ++++++.+++++ +|++  ..|..|+||||+|+..|+.+++++|+++|+.+  +..  +|.||||+|+..|+.+++++|+
T Consensus         9 ~~~~~~~~~Lis-~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~--n~~--d~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791          9 WKSKQLKSFLSS-KDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALK--NLL--ENEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             cCHHHHHHHHHh-CCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC--cCC--CCCCHHHHHHHCCCHHHHHHHH
Confidence            466778888887 7774  68999999999999999999999999999854  333  4789999999999999999999


Q ss_pred             hcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCC-ChHHHHHHhCCCH
Q psy8763          88 SEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEG-NLPLHSAVHGGDF  166 (641)
Q Consensus        88 ~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~t~L~~A~~~g~~  166 (641)
                      ++            |++++..+..|+||||+|+..|+.+++++|+++|+++        +..+..| .||||+|+..|+.
T Consensus        82 ~~------------Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi--------n~~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791         82 FS------------GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL--------MFYGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             HC------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc--------CccCCCCCcHHHHHHHHcCCH
Confidence            98            9999999999999999999999999999999999987        3456666 5999999999999


Q ss_pred             HHHHHHHHcCCCCCcCC-CCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcH-HHHHHhcCcHHHHHHHH
Q psy8763         167 KAVELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP-LHCAAMFDRCDVVQYLI  244 (641)
Q Consensus       167 ~~v~~Ll~~g~~~~~~~-~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~-L~~A~~~~~~~iv~~Ll  244 (641)
                      ++|++|+++|.+.  .+ ..|.||||+|+..|+.+++++|++++++     ++..+..|.|| ||+|+..|+.+++++|+
T Consensus       142 eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-----~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl  214 (284)
T PHA02791        142 SIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTS-----TNTNNSLLFIPDIKLAIDNKDLEMLQALF  214 (284)
T ss_pred             HHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCC-----CCcccCCCCChHHHHHHHcCCHHHHHHHH
Confidence            9999999997654  23 2478999999999999999999999998     68888888887 99999999999999999


Q ss_pred             HcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCc
Q psy8763         245 DEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDM  309 (641)
Q Consensus       245 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  309 (641)
                      ++|++++..+..+ +++                                 +..+++++|+++...
T Consensus       215 ~~Ga~in~~~~~~-~~l---------------------------------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        215 KYDINIYSVNLEN-VLL---------------------------------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             HCCCCCccCcccC-ccC---------------------------------CCHHHHHHHHHhhhh
Confidence            9999999887744 333                                 577899999987763

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-38  Score=320.13  Aligned_cols=281  Identities=18%  Similarity=0.180  Sum_probs=219.1

Q ss_pred             CcHHHHHHHHHhcCccccccccCCCChHHHHHHc--CChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcC--
Q psy8763         330 DFDECARILVKDFGASLKRACSNGYYPIHDAAKN--ASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG--  405 (641)
Q Consensus       330 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--  405 (641)
                      ...+++++|+ +.|++++.. ..|.++++.++..  ++.+++++|+++|++++..        + .+.|||+.|+..+  
T Consensus        14 ~~~~~v~~LL-~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~--------~-~~~tpL~~a~~~~~~   82 (494)
T PHA02989         14 VDKNALEFLL-RTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYK--------G-YIETPLCAVLRNREI   82 (494)
T ss_pred             CcHHHHHHHH-HcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCC--------C-CCCCcHHHHHhccCc
Confidence            4567777777 667777766 4567776554433  3567788888888776532        1 3567887776543  


Q ss_pred             ----CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccc-ccCCCCCCcHHHHHHhc--
Q psy8763         406 ----DFKAVELCLKSGAKISTQQFDLSTPVHLACSQ---GALDIVRLMFNLQPSEKLVCL-NSTDAQKMTPLHCAAMF--  475 (641)
Q Consensus       406 ----~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~---~~~~~v~~ll~~~~~~~~~~~-~~~~~~~~t~L~~A~~~--  475 (641)
                          ..+++++|+++|++++.++..|.||||.|+..   ++.+++++|++.|     .++ +..+..|.||||+|+..  
T Consensus        83 ~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G-----adin~~~d~~g~tpLh~a~~~~~  157 (494)
T PHA02989         83 TSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG-----INVNDVKNSRGYNLLHMYLESFS  157 (494)
T ss_pred             chhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC-----CCcccccCCCCCCHHHHHHHhcc
Confidence                46789999999999999998899999887754   6788999999844     447 67888899999988754  


Q ss_pred             CChhHHHHHHHcCCCCCc-CCCCCCCHHHHHHhcC----CHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHH
Q psy8763         476 DRCDVVQYLIDEGADLNV-LDKEKRSPLLLAASRG----GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA  550 (641)
Q Consensus       476 ~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~----~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~  550 (641)
                      ++.+++++|+++|++++. .+..|.||||+|+..+    +.+++++|+++|++++.++..|.|+||.++..+....    
T Consensus       158 ~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~----  233 (494)
T PHA02989        158 VKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILS----  233 (494)
T ss_pred             CCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhc----
Confidence            578899999999999887 5778899999887654    7899999999999999888888899988776542100    


Q ss_pred             HHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeee
Q psy8763         551 EEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSI  630 (641)
Q Consensus       551 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~  630 (641)
                        ....+++++|+. |+++|.+|..|+||||+|+..|+.++|++|++.|++   ++..|..|+|||++|+..|+.++++.
T Consensus       234 --~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad---in~~d~~G~TpL~~A~~~~~~~iv~~  307 (494)
T PHA02989        234 --KKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD---IYNVSKDGDTVLTYAIKHGNIDMLNR  307 (494)
T ss_pred             --ccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHH
Confidence              014566776554 689999999999999999999999999999999998   88889999999999999999999998


Q ss_pred             ceeeee
Q psy8763         631 FQVTYV  636 (641)
Q Consensus       631 l~~~~~  636 (641)
                      |++..|
T Consensus       308 LL~~~p  313 (494)
T PHA02989        308 ILQLKP  313 (494)
T ss_pred             HHhcCC
Confidence            888765

>KOG4412|consensus

Probab=100.00  E-value=1.1e-39  Score=252.14  Aligned_cols=206  Identities=29%  Similarity=0.341  Sum_probs=188.6

Q ss_pred             ChHHHHHHhcCCHHHHHHHHHCCC-CCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHH
Q psy8763         395 NLPLHSAVHGGDFKAVELCLKSGA-KISTQQF-DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCA  472 (641)
Q Consensus       395 ~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~-~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A  472 (641)
                      .++.+.+++.....-++.+++... +.+.++. +++||||+||..|+.+++.+|++    .....+|..|..|+||||.|
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLls----q~nv~~ddkDdaGWtPlhia   79 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLS----QPNVKPDDKDDAGWTPLHIA   79 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHh----cCCCCCCCccccCCchhhhh
Confidence            456667777777777777777654 6676665 89999999999999999999997    24455888999999999999


Q ss_pred             HhcCChhHHHHHHHc-CCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHH
Q psy8763         473 AMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE  551 (641)
Q Consensus       473 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~  551 (641)
                      +..|+.++|+-|+.+ |+|+|..++.|+||||||+.+|..++.++|+++|+.++.+|..|.||||.|+.-|         
T Consensus        80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavG---------  150 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVG---------  150 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhcc---------
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999999         


Q ss_pred             HHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHH
Q psy8763         552 EVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIAS  620 (641)
Q Consensus       552 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~  620 (641)
                         .++++++|+..|+.+|.+|+.|+||||.|...|+.++..+|+++||+   +++.|+.| ||+..|.
T Consensus       151 ---klkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd---~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  151 ---KLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD---TDREDKEG-TALRIAC  212 (226)
T ss_pred             ---chhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccc---eeeccccC-chHHHHH
Confidence               99999999999999999999999999999999999999999999999   89999988 9988765

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=287.72  Aligned_cols=231  Identities=16%  Similarity=0.093  Sum_probs=209.0

Q ss_pred             cCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q psy8763         363 NASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI  442 (641)
Q Consensus       363 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  442 (641)
                      .++.+++++|+++|+.          ..+..|.||||+|+..|+.+++++|++.|++++..+  +.||||.|+..|+.++
T Consensus         9 ~~~~~~~~~Lis~~a~----------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~ei   76 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF----------KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKI   76 (284)
T ss_pred             cCHHHHHHHHHhCCCC----------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHH
Confidence            3567888999988764          346789999999999999999999999999988764  6899999999999999


Q ss_pred             HHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCC-CHHHHHHhcCCHHHHHHHHHcC
Q psy8763         443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR-SPLLLAASRGGWKTVLTLVRNK  521 (641)
Q Consensus       443 v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g  521 (641)
                      +++|++.+     .+++..|..|.||||+|+..++.+++++|+++|++++..+..|+ ||||+|+..++.+++++|++++
T Consensus        77 V~lLL~~G-----advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~  151 (284)
T PHA02791         77 VKILLFSG-----MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  151 (284)
T ss_pred             HHHHHHCC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcC
Confidence            99999854     44788999999999999999999999999999999999988885 8999999999999999999997


Q ss_pred             CCccccc-cCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCCh-HHHHHhcCCHHHHHHHHhcC
Q psy8763         522 ANILLKD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESP-LHLAARYGRYNTVKKLLSSE  599 (641)
Q Consensus       522 ~~~~~~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g  599 (641)
                      .+.  .| ..|.||||+|+..|            +.+++++|+++|++++.+|..|.|| ||+|+.+|+.++|++|+++|
T Consensus       152 ~~~--~d~~~g~TpLh~Aa~~g------------~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G  217 (284)
T PHA02791        152 PST--FDLAILLSCIHITIKNG------------HVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD  217 (284)
T ss_pred             Ccc--cccccCccHHHHHHHcC------------CHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC
Confidence            654  23 35899999999999            9999999999999999999999987 99999999999999999999


Q ss_pred             CCccccccCCCCCChhHHHHHhhCCcceeeeceee
Q psy8763         600 RGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVT  634 (641)
Q Consensus       600 ~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~  634 (641)
                      ++   ++.+|.. .|||      ++.|++++|+++
T Consensus       218 a~---in~~~~~-~~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        218 IN---IYSVNLE-NVLL------DDAEIAKMIIEK  242 (284)
T ss_pred             CC---CccCccc-CccC------CCHHHHHHHHHh
Confidence            99   8999984 4777      788999999987

>KOG4412|consensus

Probab=100.00  E-value=1.3e-38  Score=246.21  Aligned_cols=208  Identities=26%  Similarity=0.337  Sum_probs=187.2

Q ss_pred             CcchhhHHHhcCCHHHHHHHHhcCCccccccCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCC
Q psy8763          32 KQAVLHLATELNKVPILLILLQYKDMIDILQGGE-HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS  110 (641)
Q Consensus        32 ~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~  110 (641)
                      +.++.+.+++.....-++-+++.... +++.++. +|+||||+||..|+.+|+.+|++..           +..++.+|.
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~k-SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~-----------nv~~ddkDd   70 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPK-SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQP-----------NVKPDDKDD   70 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChh-hhhccccccCCceeeeeeecCchhHHHHHHhcC-----------CCCCCCccc
Confidence            45778888888888888888887642 4555555 8999999999999999999999741           788899999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHh-cccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcH
Q psy8763         111 NGYYPIHDAAKNASSKTMEVFLQF-GESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP  189 (641)
Q Consensus       111 ~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~  189 (641)
                      .|+||||.|+..|+.++|+.|+.+ |+++        +..+..|.|+||+|+..|+.+++++|+++|+.++.+|..|.||
T Consensus        71 aGWtPlhia~s~g~~evVk~Ll~r~~adv--------na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtp  142 (226)
T KOG4412|consen   71 AGWTPLHIAASNGNDEVVKELLNRSGADV--------NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTP  142 (226)
T ss_pred             cCCchhhhhhhcCcHHHHHHHhcCCCCCc--------ceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCch
Confidence            999999999999999999999998 8887        6778999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q psy8763         190 VHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA  265 (641)
Q Consensus       190 l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~  265 (641)
                      ||.|+.-|.++++++|+..++.     ++..|.+|+||||.|...|+.++..+|+++|+++...|..| |++..+.
T Consensus       143 lHRAAavGklkvie~Li~~~a~-----~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  143 LHRAAAVGKLKVIEYLISQGAP-----LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             hHHHHhccchhhHHHHHhcCCC-----CCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            9999999999999999999977     79999999999999999999999999999999999999988 8877664

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.1e-37  Score=306.53  Aligned_cols=284  Identities=18%  Similarity=0.234  Sum_probs=243.3

Q ss_pred             hcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHc--CCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHH
Q psy8763          41 ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIY--DFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD  118 (641)
Q Consensus        41 ~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~  118 (641)
                      ...+.++|++|+++|+  +++.. ..|.||||.++..  ++.++|++|+++            |++++..+ .+.||||.
T Consensus        12 ~~~~~~~v~~LL~~Ga--dvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~------------GAdvn~~~-~~~tpL~~   75 (494)
T PHA02989         12 DTVDKNALEFLLRTGF--DVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDN------------GADVNYKG-YIETPLCA   75 (494)
T ss_pred             CcCcHHHHHHHHHcCC--Ccccc-cCCCCHHHHHHhcCCCChHHHHHHHHc------------CCCccCCC-CCCCcHHH
Confidence            3578999999999998  55555 5689998766554  479999999999            99999876 57899999


Q ss_pred             HHHhC------CHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhC---CCHHHHHHHHHcCCCC-CcCCCCCCc
Q psy8763         119 AAKNA------SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHG---GDFKAVELCLKSGAKI-STQQFDLST  188 (641)
Q Consensus       119 A~~~g------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~~~t  188 (641)
                      |+.++      +.+++++|+++|+++        +..+..|.|||+.|+..   |+.++|++|+++|+++ +..+..|.|
T Consensus        76 a~~~~~~~~~~~~~iv~~Ll~~Gadi--------n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t  147 (494)
T PHA02989         76 VLRNREITSNKIKKIVKLLLKFGADI--------NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN  147 (494)
T ss_pred             HHhccCcchhhHHHHHHHHHHCCCCC--------CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence            98754      478999999999997        56688999999988755   6899999999999999 889999999


Q ss_pred             HHHHHHHc--CcHHHHHHHHhcCCCcccccccc-CCCCCCcHHHHHHhcC----cHHHHHHHHHcCCCCCccCCCCCCHH
Q psy8763         189 PVHLACSQ--GALDIVRLMFNLQPSEKLVCLNS-TDAQKMTPLHCAAMFD----RCDVVQYLIDEGADLNVLDKEKRSPL  261 (641)
Q Consensus       189 ~l~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~-~~~~~~t~L~~A~~~~----~~~iv~~Ll~~g~~~~~~~~~~~t~l  261 (641)
                      |||+|+..  ++.+++++|+++|++     ++. .+..|.|||+.|+..+    +.+++++|+++|++++..+..+.+++
T Consensus       148 pLh~a~~~~~~~~~iv~~Ll~~Gad-----i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l  222 (494)
T PHA02989        148 LLHMYLESFSVKKDVIKILLSFGVN-----LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVL  222 (494)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCC-----ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHH
Confidence            99998764  689999999999998     455 5778999999998764    89999999999999999999899999


Q ss_pred             HHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHh
Q psy8763         262 LLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKD  341 (641)
Q Consensus       262 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  341 (641)
                      +.+.....                     +...+..+++++++. +.  +++..+..|.||||+|+..++.+++++|+ +
T Consensus       223 ~~~~~~~~---------------------~~~~~~~~il~~l~~-~a--dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL-~  277 (494)
T PHA02989        223 ESFLDNNK---------------------ILSKKEFKVLNFILK-YI--KINKKDKKGFNPLLISAKVDNYEAFNYLL-K  277 (494)
T ss_pred             HHHHHhch---------------------hhcccchHHHHHHHh-CC--CCCCCCCCCCCHHHHHHHhcCHHHHHHHH-H
Confidence            88765431                     223345677777665 44  77788889999999999999999999999 7


Q ss_pred             cCccccccccCCCChHHHHHHcCChHHHHHHHhcccc
Q psy8763         342 FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES  378 (641)
Q Consensus       342 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  378 (641)
                      .|++++..+..|.|||++|+..++.++++.|++.++.
T Consensus       278 ~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        278 LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            8999999999999999999999999999999997754

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.9e-37  Score=302.38  Aligned_cols=245  Identities=23%  Similarity=0.299  Sum_probs=223.2

Q ss_pred             CCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy8763         353 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  432 (641)
Q Consensus       353 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  432 (641)
                      .+++|+.|+..|+.+++++|++.|++++        ..+..|.||||+|+..++.+++++|++.|++++..+..+.||||
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n--------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~   73 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN--------FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELH   73 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC--------ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHH
Confidence            4678999999999999999999998864        34557999999999999999999999999999998889999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHH
Q psy8763         433 LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK  512 (641)
Q Consensus       433 ~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  512 (641)
                      .|+..|+.+++++|++.+...    .+..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~----~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFA----DDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcc----cccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999966542    2345667999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCC-CChHHHHHhcCCHHH
Q psy8763         513 TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN-ESPLHLAARYGRYNT  591 (641)
Q Consensus       513 ~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~  591 (641)
                      ++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++..+..| .||+|+|+..|+.++
T Consensus       150 ~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g------------~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i  217 (413)
T PHA02875        150 GIELLIDHKACLDIEDCCGCTPLIIAMAKG------------DIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI  217 (413)
T ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHcC------------CHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence            999999999999999999999999999999            9999999999999999999877 488999999999999


Q ss_pred             HHHHHhcCCCccccccCCCCCChhHHHHHh
Q psy8763         592 VKKLLSSERGSFIINESDGEGLTPLHIASK  621 (641)
Q Consensus       592 v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~  621 (641)
                      |++|+++|+++......+..+.||++++..
T Consensus       218 v~~Ll~~gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        218 VRLFIKRGADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             HHHHHHCCcCcchHhhcCCCchHHHHHHHh
Confidence            999999999944334457889999998754

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.6e-36  Score=295.39  Aligned_cols=244  Identities=23%  Similarity=0.284  Sum_probs=212.7

Q ss_pred             CcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCC
Q psy8763          32 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSN  111 (641)
Q Consensus        32 ~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~  111 (641)
                      .+++||.|++.|+++++++|+++|+  +++..+..|.||||+|+..|+.+++++|+++            |++++..+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~--~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~------------ga~~~~~~~~   67 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGI--NPNFEIYDGISPIKLAMKFRDSEAIKLLMKH------------GAIPDVKYPD   67 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC------------CCCccccCCC
Confidence            5789999999999999999999998  5566778899999999999999999999999            8888888889


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHH
Q psy8763         112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  191 (641)
Q Consensus       112 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~  191 (641)
                      +.||||.|+..|+.+++++|++.|+..+       +..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~-------~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh  140 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLDLGKFAD-------DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLH  140 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHHcCCccc-------ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            9999999999999999999999998653       344667999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcc
Q psy8763         192 LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK  271 (641)
Q Consensus       192 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  271 (641)
                      +|+..|+.+++++|+++++.     ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.+            
T Consensus       141 ~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~------------  203 (413)
T PHA02875        141 LAVMMGDIKGIELLIDHKAC-----LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCV------------  203 (413)
T ss_pred             HHHHcCCHHHHHHHHhcCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc------------
Confidence            99999999999999999988     6888999999999999999999999999999999987766542            


Q ss_pred             cccccccccccCchhHHHHHHhcCChhHHHHHhhCCCccccc-CCCCCcchHHHHHH
Q psy8763         272 TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL-QGGEHGRTALHIAA  327 (641)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~l~~a~  327 (641)
                                    ++++.|+..++.+++++|++.|+.++.. ..+..+.|+++...
T Consensus       204 --------------t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~  246 (413)
T PHA02875        204 --------------AALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMIC  246 (413)
T ss_pred             --------------hHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHH
Confidence                          2344445556888888888888855432 22445667776654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-36  Score=302.50  Aligned_cols=275  Identities=16%  Similarity=0.214  Sum_probs=135.3

Q ss_pred             ChhHHHHHhhCCCcccccCCCCCcchHHHHHHH--hCcHHHHHHHHHhcCccccccccCCCChHHHHHHc-----CChHH
Q psy8763         296 KVPILLILLQYKDMIDILQGGEHGRTALHIAAI--YDFDECARILVKDFGASLKRACSNGYYPIHDAAKN-----ASSKT  368 (641)
Q Consensus       296 ~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~-----~~~~~  368 (641)
                      ..+.++.|+..+....   . ..+.|+++....  .++.+++++|+ +.|++++..+..|.|||+.++..     +..++
T Consensus        17 ~~~~v~~ll~~~~~~~---~-~~~~~~~~~yl~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~i   91 (489)
T PHA02798         17 KLSTVKLLIKSCNPNE---I-VNEYSIFQKYLQRDSPSTDIVKLFI-NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDI   91 (489)
T ss_pred             cHHHHHHHHhcCChhh---h-cccchHHHHHHhCCCCCHHHHHHHH-HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHH
Confidence            4556777775543111   1 224455443332  23567777777 56777777777777777666543     33455


Q ss_pred             HHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---HHH
Q psy8763         369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG---DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA---LDI  442 (641)
Q Consensus       369 ~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~---~~~  442 (641)
                      +++|+++|+++        +..+..|.||||+|+..+   +.+++++|+++|++++..+..|.||||.|++.++   .++
T Consensus        92 v~~Ll~~Gadi--------N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~v  163 (489)
T PHA02798         92 VKILIENGADI--------NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEI  163 (489)
T ss_pred             HHHHHHCCCCC--------CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHH
Confidence            55555555442        344444555555555432   3455555555555555555555555555555444   455


Q ss_pred             HHHHHhcCCCccccccccCC-CCCCcHHHHHHhc----CChhHHHHHHHcCCCCCcCCCCCCCHHH-------HHHhcCC
Q psy8763         443 VRLMFNLQPSEKLVCLNSTD-AQKMTPLHCAAMF----DRCDVVQYLIDEGADLNVLDKEKRSPLL-------LAASRGG  510 (641)
Q Consensus       443 v~~ll~~~~~~~~~~~~~~~-~~~~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-------~A~~~~~  510 (641)
                      +++|++.+     .+++..+ ..|.||||.++..    ++.+++++|+++|++++..+..|.++++       ++...++
T Consensus       164 v~~Ll~~g-----adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~  238 (489)
T PHA02798        164 IKLLLEKG-----VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFK  238 (489)
T ss_pred             HHHHHHhC-----CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccch
Confidence            55555422     2233332 2344555544432    2444555555555555544444444443       1122333


Q ss_pred             HHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHH
Q psy8763         511 WKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYN  590 (641)
Q Consensus       511 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  590 (641)
                      .+++++|+. ++++|.+|..|.||||+|+..+            ..+++++|+++|+|++.+|..|+|||+.|+..++.+
T Consensus       239 ~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~------------~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~  305 (489)
T PHA02798        239 KNILDFIFS-YIDINQVDELGFNPLYYSVSHN------------NRKIFEYLLQLGGDINIITELGNTCLFTAFENESKF  305 (489)
T ss_pred             HHHHHHHHh-cCCCCCcCcCCccHHHHHHHcC------------cHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHH
Confidence            444444333 3455555555555555555554            444555555555555555555555555555555555


Q ss_pred             HHHHHHhcCCC
Q psy8763         591 TVKKLLSSERG  601 (641)
Q Consensus       591 ~v~~Ll~~g~~  601 (641)
                      +++.|++.+++
T Consensus       306 iv~~lL~~~~~  316 (489)
T PHA02798        306 IFNSILNKKPN  316 (489)
T ss_pred             HHHHHHccCCC
Confidence            55555555544

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=290.52  Aligned_cols=274  Identities=17%  Similarity=0.159  Sum_probs=234.1

Q ss_pred             cHHHHHHHHHhcCccccccccCCCChHHHHHH--cCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhc----
Q psy8763         331 FDECARILVKDFGASLKRACSNGYYPIHDAAK--NASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG----  404 (641)
Q Consensus       331 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~----  404 (641)
                      ..+.++.|+ ..+ +++.. ..+.++++....  .++.+++++|+++|++++        ..+..|.|||+.++..    
T Consensus        17 ~~~~v~~ll-~~~-~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn--------~~d~~g~TpL~~~~~n~~~~   85 (489)
T PHA02798         17 KLSTVKLLI-KSC-NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVN--------GLDNEYSTPLCTILSNIKDY   85 (489)
T ss_pred             cHHHHHHHH-hcC-Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCC--------CCCCCCCChHHHHHHhHHhH
Confidence            468999999 433 33333 346676664443  447899999999999865        4457899999998864    


Q ss_pred             -CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCC---
Q psy8763         405 -GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG---ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR---  477 (641)
Q Consensus       405 -~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~---~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~---  477 (641)
                       +..+++++|+++|++++..+..|.||||.|+..+   +.+++++|++.+     .+++..+..|.||||+|+..++   
T Consensus        86 ~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G-----advn~~d~~g~tpL~~a~~~~~~~~  160 (489)
T PHA02798         86 KHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENG-----ADTTLLDKDGFTMLQVYLQSNHHID  160 (489)
T ss_pred             HhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC-----CCccccCCCCCcHHHHHHHcCCcch
Confidence             6789999999999999999999999999999875   789999999954     4589999999999999999987   


Q ss_pred             hhHHHHHHHcCCCCCcCC-CCCCCHHHHHHhc----CCHHHHHHHHHcCCCccccccCCCchhHHH-------hhcCCCc
Q psy8763         478 CDVVQYLIDEGADLNVLD-KEKRSPLLLAASR----GGWKTVLTLVRNKANILLKDINRRNILHLL-------VLNGGGH  545 (641)
Q Consensus       478 ~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~----~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a-------~~~~~~~  545 (641)
                      .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+++|++++..+..|.++++..       ....   
T Consensus       161 ~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~---  237 (489)
T PHA02798        161 IEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRF---  237 (489)
T ss_pred             HHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccc---
Confidence            899999999999999885 5789999998764    479999999999999999999999987722       2222   


Q ss_pred             hhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCc
Q psy8763         546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH  625 (641)
Q Consensus       546 ~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~  625 (641)
                               ..+++++|+. |+|+|.+|..|+||||+|+.+|+.+++++|++.|++   ++..|..|+|||++|+.+++.
T Consensus       238 ---------~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd---in~~d~~G~TpL~~A~~~~~~  304 (489)
T PHA02798        238 ---------KKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD---INIITELGNTCLFTAFENESK  304 (489)
T ss_pred             ---------hHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc---ccccCCCCCcHHHHHHHcCcH
Confidence                     5677877665 699999999999999999999999999999999999   999999999999999999999


Q ss_pred             ceeeeceeeee
Q psy8763         626 YSVSIFQVTYV  636 (641)
Q Consensus       626 ~~~~~l~~~~~  636 (641)
                      ++++.|+++.|
T Consensus       305 ~iv~~lL~~~~  315 (489)
T PHA02798        305 FIFNSILNKKP  315 (489)
T ss_pred             HHHHHHHccCC
Confidence            99999988754

>KOG4369|consensus

Probab=100.00  E-value=1.1e-33  Score=276.85  Aligned_cols=322  Identities=19%  Similarity=0.162  Sum_probs=260.6

Q ss_pred             CchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCcccc-ccccCCCChHHHHH
Q psy8763         283 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLK-RACSNGYYPIHDAA  361 (641)
Q Consensus       283 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~~l~~a~  361 (641)
                      ...++|..++..|+.++++.|+.+|.  ++..+++.|.+||.+|+-.|+..+|+.|+ ...++++ ..|..+.|+|..|+
T Consensus       756 n~~t~LT~acaggh~e~vellv~rga--niehrdkkgf~plImaatagh~tvV~~ll-k~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGA--NIEHRDKKGFVPLIMAATAGHITVVQDLL-KAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcc--cccccccccchhhhhhcccCchHHHHHHH-hhhhhhhhhcccccCceEEEec
Confidence            34466777888888888888888877  56667777888888888888888888888 4444444 55667778888888


Q ss_pred             HcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHcCC
Q psy8763         362 KNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ--FDLSTPVHLACSQGA  439 (641)
Q Consensus       362 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~--~~~~t~l~~a~~~~~  439 (641)
                      ..|+.++++.|+..|+.-        ..++....||+..|...|..++++.|+..|..++.+.  +.|.+||+.|..+|+
T Consensus       833 sggr~~vvelLl~~gank--------ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh  904 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGANK--------EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGH  904 (2131)
T ss_pred             CCCcchHHHHHHHhhccc--------cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccc
Confidence            888888888888888763        3344566788888888888888888888888777664  447788888888888


Q ss_pred             HHHHHHHHhcCCCcccccccc-CCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHH
Q psy8763         440 LDIVRLMFNLQPSEKLVCLNS-TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV  518 (641)
Q Consensus       440 ~~~v~~ll~~~~~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  518 (641)
                      ...++.|++.+.+     +|. ...+.+|+|-+|+..|+.+++.+||.+.+++..+-+.|.|||+.++.-|.+++-++|+
T Consensus       905 ~~at~~ll~~gsd-----iNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li  979 (2131)
T KOG4369|consen  905 QAATLSLLQPGSD-----INAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLI  979 (2131)
T ss_pred             cHHHHHHhcccch-----hccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhh
Confidence            8888888874433     444 3445668888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCCcccc--ccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHH
Q psy8763         519 RNKANILLK--DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLL  596 (641)
Q Consensus       519 ~~g~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  596 (641)
                      ..|+|+|..  -..-.|+|.+++..|            +.+.++.|+...+-+..+|++|.|+|..|+-.|....+.+|+
T Consensus       980 ~~gad~nasPvp~T~dtalti~a~kG------------h~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~ 1047 (2131)
T KOG4369|consen  980 AAGADTNASPVPNTWDTALTIPANKG------------HTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILV 1047 (2131)
T ss_pred             hcccccccCCCCCcCCccceeecCCC------------chhhhHHhhCCccceecccCCCCcccchhccCCccccchHHh
Confidence            888887764  233458888888888            888899999888888999999999999999999999999999


Q ss_pred             hcCCCccccccCCCCCChhHHHHHhhCCcceeeeceeee
Q psy8763         597 SSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTY  635 (641)
Q Consensus       597 ~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~~  635 (641)
                      +++++   .+..|+...|+++-|.+.||.+||++....-
T Consensus      1048 ~~~ad---~d~qdnr~~S~~maafRKgh~~iVk~mv~~a 1083 (2131)
T KOG4369|consen 1048 SSVAD---ADQQDNRTNSRTMAAFRKGHFAIVKKMVPPA 1083 (2131)
T ss_pred             hcccC---hhhhhcccccccHHHHHhchhheeccccCch
Confidence            99999   8889999999999999999999999876553

>KOG0509|consensus

Probab=100.00  E-value=1.9e-33  Score=263.19  Aligned_cols=208  Identities=29%  Similarity=0.392  Sum_probs=194.4

Q ss_pred             ChHHHHHHhcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCC-CCCCcHHHHH
Q psy8763         395 NLPLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD-AQKMTPLHCA  472 (641)
Q Consensus       395 ~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~-~~~~t~L~~A  472 (641)
                      ...+..|++.|..+.++.|++. |.+++..|.+|.++||.|+.+++.+++++|++++.     ++|... .-+.||||+|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga-----dvn~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGA-----DVNAIGGVLGSTPLHWA  119 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCC-----CccccCCCCCCCcchHH
Confidence            3456789999999999999999 99999999999999999999999999999999554     478877 7788999999


Q ss_pred             HhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHH
Q psy8763         473 AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEE  552 (641)
Q Consensus       473 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~  552 (641)
                      +++|+..+|++|+++|||++.+|.+|.+|||+|++.++.-++-+|+.+|+++|.+|.+|+||||+|+.++          
T Consensus       120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg----------  189 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKG----------  189 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhc----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             HHHHHHHHHHhhcCCcccccC-CCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhh
Q psy8763         553 VAAVFLGENLINLGACINLKN-NSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE  622 (641)
Q Consensus       553 ~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~  622 (641)
                        ....+..|+.-|+.++.+| ..|.||||.|+..|+..++++|++.|++   .+..|.+|+||+++|.+.
T Consensus       190 --~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~---~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  190 --FALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD---LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             --ccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCc---ccccccCCCCHHHHHHHh
Confidence              5555999999999999998 8999999999999999999977777777   888999999999999887

>KOG0509|consensus

Probab=100.00  E-value=5.5e-33  Score=260.07  Aligned_cols=211  Identities=30%  Similarity=0.378  Sum_probs=197.0

Q ss_pred             CCCcchhhHHHhcCCHHHHHHHHhc-CCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccC
Q psy8763          30 NKKQAVLHLATELNKVPILLILLQY-KDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRA  108 (641)
Q Consensus        30 ~~~~t~L~~A~~~g~~~~v~~ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~  108 (641)
                      ....+-++.|+++|+++-|+.|++. |.  ++++.|.+|.|+||+|+.+++++++++|+++            |+++|..
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lve~~g~--~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~------------gadvn~~  107 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELVESEGE--SVNNPDREGVTLLHWAAINNRLDVARYLISH------------GADVNAI  107 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHHhhcCc--CCCCCCcCCccceeHHHHcCcHHHHHHHHHc------------CCCcccc
Confidence            3446778899999999999999998 65  7788899999999999999999999999999            9999998


Q ss_pred             C-CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCC
Q psy8763         109 C-SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS  187 (641)
Q Consensus       109 ~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  187 (641)
                      + .-+.||||+|+++|+..+++.|+++||++        +.+|.+|.+|||.|++.|+.-+|-+|+.+|++++.+|..|+
T Consensus       108 gG~l~stPLHWAar~G~~~vv~lLlqhGAdp--------t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~gr  179 (600)
T KOG0509|consen  108 GGVLGSTPLHWAARNGHISVVDLLLQHGADP--------TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGR  179 (600)
T ss_pred             CCCCCCCcchHHHHcCcHHHHHHHHHcCCCC--------ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCC
Confidence            7 77889999999999999999999999998        68899999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCccccccccCC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Q psy8763         188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD-AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS  266 (641)
Q Consensus       188 t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~  266 (641)
                      |||++|+..|+...++.|+..++.     +...| ..|.||||+|+..|+..++.++++.|++.+..+.+|.||+..|.+
T Consensus       180 TpLmwAaykg~~~~v~~LL~f~a~-----~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  180 TPLMWAAYKGFALFVRRLLKFGAS-----LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             CHHHHHHHhcccHHHHHHHHhccc-----ccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHH
Confidence            999999999999989999999988     45565 899999999999999999998888889999999999999999976


Q ss_pred             c
Q psy8763         267 R  267 (641)
Q Consensus       267 ~  267 (641)
                      .
T Consensus       255 ~  255 (600)
T KOG0509|consen  255 R  255 (600)
T ss_pred             h
Confidence            5

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.2e-31  Score=228.94  Aligned_cols=178  Identities=19%  Similarity=0.211  Sum_probs=158.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcC--ChhHHHHHHHcCCCCCcCC-CCCCCHH
Q psy8763         426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD--RCDVVQYLIDEGADLNVLD-KEKRSPL  502 (641)
Q Consensus       426 ~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~-~~g~t~L  502 (641)
                      .+.+||+.|+..++.+.|+.|++.        ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.|||
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~--------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpL   91 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF--------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSAL   91 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh--------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHH
Confidence            457899999999999999999863        4567888999999999854  8899999999999999987 4899999


Q ss_pred             HHHHhc---CCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCCh
Q psy8763         503 LLAASR---GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESP  579 (641)
Q Consensus       503 ~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  579 (641)
                      |+|+..   ++.+++++|+++|++++.+|..|.||||.|+.....          +.+++++|+++|++++.+|..|.||
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~----------~~~iv~~Li~~gadin~~d~~g~t~  161 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNV----------RINVIKLLIDSGVSFLNKDFDNNNI  161 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccC----------CHHHHHHHHHcCCCcccccCCCCcH
Confidence            998753   479999999999999999999999999998764211          7899999999999999999999999


Q ss_pred             HHH-HHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCC
Q psy8763         580 LHL-AARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGF  624 (641)
Q Consensus       580 L~~-A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~  624 (641)
                      ||. |+..++.+++++|++.|++   ++.+|..|+|||++|..++-
T Consensus       162 Lh~~a~~~~~~~iv~~Ll~~Gad---i~~~d~~g~tpl~la~~~~~  204 (209)
T PHA02859        162 LYSYILFHSDKKIFDFLTSLGID---INETNKSGYNCYDLIKFRNL  204 (209)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhhhh
Confidence            996 5667899999999999999   89999999999999998863

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=5.9e-30  Score=239.15  Aligned_cols=200  Identities=16%  Similarity=0.053  Sum_probs=149.1

Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc------cCCCCCCcHHHHHHh--cCChhHH
Q psy8763         410 VELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN------STDAQKMTPLHCAAM--FDRCDVV  481 (641)
Q Consensus       410 ~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~------~~~~~~~t~L~~A~~--~~~~~~v  481 (641)
                      .++++.+|++++....++     .|+..+..+++++|+.++..     ++      .++..++|+||+++.  .++.++|
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~-----~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV  134 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYM-----EDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIV  134 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccc-----cchhhhhhhccccccHHHHHHHHhcCCCHHHH
Confidence            467777888777766555     77777888888888875433     34      566667888888887  7778888


Q ss_pred             HHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccc------cCCCchhHHHhhcCCCchhhHHHHHHH
Q psy8763         482 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD------INRRNILHLLVLNGGGHIKEFAEEVAA  555 (641)
Q Consensus       482 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------~~g~t~l~~a~~~~~~~~~~~~~~~~~  555 (641)
                      ++|+++|||++..  .+.||+|.|+..++.+++++|+++|++.....      ..+.+++|.|...+            .
T Consensus       135 ~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~------------~  200 (437)
T PHA02795        135 DFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPT------------V  200 (437)
T ss_pred             HHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcC------------H
Confidence            8888888888763  34778888888888888888888887432221      33667777777777            7


Q ss_pred             HHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCC--------cce
Q psy8763         556 VFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGF--------HYS  627 (641)
Q Consensus       556 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~--------~~~  627 (641)
                      .+++++|+++|+++|.+|..|.||||+|+..|+.++|++|+++|++   ++.+|..|.||||+|+..|+        .++
T Consensus       201 ~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd---IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eI  277 (437)
T PHA02795        201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN---VNAVMSNGYTCLDVAVDRGSVIARRETHLKI  277 (437)
T ss_pred             HHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCcccccccHHHH
Confidence            7888888888888888888888888888888888888888888887   77888888888888888774        477


Q ss_pred             eeeceeeee
Q psy8763         628 VSIFQVTYV  636 (641)
Q Consensus       628 ~~~l~~~~~  636 (641)
                      +++|+++.+
T Consensus       278 velLL~~ga  286 (437)
T PHA02795        278 LEILLREPL  286 (437)
T ss_pred             HHHHHhCCC
Confidence            777776543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.1e-29  Score=234.37  Aligned_cols=207  Identities=15%  Similarity=0.105  Sum_probs=181.8

Q ss_pred             CCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccc----cccCCCCCchHHHHHHH--cCCHHHHHHHHhcCCCc
Q psy8763          20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMID----ILQGGEHGRTALHIAAI--YDFDECARILVSEQPEC   93 (641)
Q Consensus        20 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~----~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~~~~~~   93 (641)
                      ++|.++|.+...|     +|+..+.-|+++.|+++|+.++    +-..+..+.|+||.|+.  .|+.++|++|+++    
T Consensus        70 ~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~----  140 (437)
T PHA02795         70 IHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH----  140 (437)
T ss_pred             HcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC----
Confidence            3888888888877     9999999999999999999644    11567889999999999  8999999999999    


Q ss_pred             chhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHH
Q psy8763          94 DWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCL  173 (641)
Q Consensus        94 ~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll  173 (641)
                              ||+++..  .+.||+|.|+..|+.+++++|+++|++..-..  .....+..+.+++|.|+..++.+++++|+
T Consensus       141 --------GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~--~~~l~~~~~~t~l~~a~~~~~~eIve~LI  208 (437)
T PHA02795        141 --------GAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDV--KLDLYKIIQYTRGFLVDEPTVLEIYKLCI  208 (437)
T ss_pred             --------CCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccc--cchhhhhhccchhHHHHhcCHHHHHHHHH
Confidence                    9999874  45799999999999999999999998542110  01122345779999999999999999999


Q ss_pred             HcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCc--------HHHHHHHHH
Q psy8763         174 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR--------CDVVQYLID  245 (641)
Q Consensus       174 ~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~--------~~iv~~Ll~  245 (641)
                      ++|++++.++..|.||||+|+..|+.+++++|+++|++     ++..+..|.||||+|+..|+        .+++++|++
T Consensus       209 s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-----IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~  283 (437)
T PHA02795        209 PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-----VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR  283 (437)
T ss_pred             hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence            99999999999999999999999999999999999998     79999999999999999984        699999999


Q ss_pred             cCCCCCc
Q psy8763         246 EGADLNV  252 (641)
Q Consensus       246 ~g~~~~~  252 (641)
                      +|++++.
T Consensus       284 ~gadI~~  290 (437)
T PHA02795        284 EPLSIDC  290 (437)
T ss_pred             CCCCCCc
Confidence            9998875

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5e-29  Score=218.00  Aligned_cols=179  Identities=15%  Similarity=0.164  Sum_probs=112.2

Q ss_pred             ccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCcchhHhhhcCC
Q psy8763          26 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD--FDECARILVSEQPECDWIMVKDFGA  103 (641)
Q Consensus        26 ~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~g~  103 (641)
                      +...+.+.||||+|++.|++++|+.|++.+     +..+..|.||||+|+..+  +.+++++|+++            |+
T Consensus        15 ~~~~~~~~~pL~~A~~~~~~~~vk~Li~~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~------------ga   77 (209)
T PHA02859         15 DYLFYRYCNPLFYYVEKDDIEGVKKWIKFV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIEN------------GA   77 (209)
T ss_pred             HHHhhccCcHHHHHHHhCcHHHHHHHHHhh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHHC------------CC
Confidence            344556677777777777777777777642     234566777777777643  67777777776            67


Q ss_pred             CcccCC-CCCCcHHHHHHHh---CCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHh--CCCHHHHHHHHHcCC
Q psy8763         104 SLKRAC-SNGYYPIHDAAKN---ASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVH--GGDFKAVELCLKSGA  177 (641)
Q Consensus       104 ~~~~~~-~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~--~g~~~~v~~Ll~~g~  177 (641)
                      +++..+ ..|.||||.|+..   ++.+++++|+++|+++        +..+..|.||||+|+.  .++.+++++|++.|+
T Consensus        78 dvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi--------n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga  149 (209)
T PHA02859         78 DVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI--------TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV  149 (209)
T ss_pred             CCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC--------CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence            776665 3566777766543   3566666666666665        3456666666666654  345666666666666


Q ss_pred             CCCcCCCCCCcHHHH-HHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhc
Q psy8763         178 KISTQQFDLSTPVHL-ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF  234 (641)
Q Consensus       178 ~~~~~~~~~~t~l~~-A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~  234 (641)
                      +++.++..|.||||. |+..++.+++++|++++++     ++.++..|.|||++|...
T Consensus       150 din~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad-----i~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        150 SFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID-----INETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHhhh
Confidence            666666666666664 3445566666666666655     455556666666666544

>KOG0502|consensus

Probab=99.96  E-value=2.5e-29  Score=201.47  Aligned_cols=265  Identities=26%  Similarity=0.241  Sum_probs=219.1

Q ss_pred             chHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHH
Q psy8763         320 RTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLH  399 (641)
Q Consensus       320 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~  399 (641)
                      ...+..++..+..+.-..+......   ..+..|...+..+...++.++........++-       +...+++|+++++
T Consensus        32 ~a~~~~~~~m~~t~p~~~l~~~~s~---~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-------~~~t~p~g~~~~~  101 (296)
T KOG0502|consen   32 IAELFEQVEMGTTEPRCALTAEISA---LRNALGESLLTVAVRSGNSDVAVQSAQLDPDA-------IDETDPEGWSALL  101 (296)
T ss_pred             HHHHHHHhhccccchhHHHHHHHHH---HHHhcCCcccchhhhcCCcHHHHHhhccCCCC-------CCCCCchhhhhhh
Confidence            3444455555554444444432221   12234445555677777777777666644432       2334567999999


Q ss_pred             HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChh
Q psy8763         400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD  479 (641)
Q Consensus       400 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  479 (641)
                      .+...++...+...+.+|...+..+--+.+|+++++...+.+.+..+.+.       .+|..|..|.|||.||+.+|+..
T Consensus       102 v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n-------~VN~~De~GfTpLiWAaa~G~i~  174 (296)
T KOG0502|consen  102 VAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN-------KVNACDEFGFTPLIWAAAKGHIP  174 (296)
T ss_pred             hcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc-------cccCccccCchHhHHHHhcCchH
Confidence            99999999999999999999999999999999999999988888777652       27899999999999999999999


Q ss_pred             HHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHH
Q psy8763         480 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG  559 (641)
Q Consensus       480 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~  559 (641)
                      +|++|++.|+|+....+...++|++|++.|..++|++|++.+.|+|..|.+|.|||-+|+..+            +.+|+
T Consensus       175 vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgn------------hvkcv  242 (296)
T KOG0502|consen  175 VVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGN------------HVKCV  242 (296)
T ss_pred             HHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCC------------hHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999            99999


Q ss_pred             HHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHH
Q psy8763         560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLH  617 (641)
Q Consensus       560 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~  617 (641)
                      +.|++.|+|++..+..|++++..|+..|+. +|+..+++-+.   .+..|+.-+||+|
T Consensus       243 e~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~l---kl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  243 ESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHAL---KLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHH---HHhhcccCCCCCC
Confidence            999999999999999999999999999988 88988988877   6667777777764

>KOG4369|consensus

Probab=99.96  E-value=1.6e-29  Score=247.86  Aligned_cols=323  Identities=21%  Similarity=0.263  Sum_probs=242.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhh
Q psy8763          65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREE  144 (641)
Q Consensus        65 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  144 (641)
                      .+-.|+|..||..||.|+|++|+.+            |+++..+|..|.+||.+|+..||..+|+.|+.+.++++     
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~r------------ganiehrdkkgf~plImaatagh~tvV~~llk~ha~ve-----  817 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVR------------GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE-----  817 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHh------------cccccccccccchhhhhhcccCchHHHHHHHhhhhhhh-----
Confidence            3457999999999999999999999            99999999999999999999999999999999999874     


Q ss_pred             hhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccC--CC
Q psy8763         145 MISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNST--DA  222 (641)
Q Consensus       145 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~--~~  222 (641)
                        ...|+.+.|+|.+||..|+.++|++||..|++-..++....|||.+|..-|..++|..|+.+|..     ++.+  ..
T Consensus       818 --aQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~Gse-----InSrtgSk  890 (2131)
T KOG4369|consen  818 --AQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSE-----INSRTGSK  890 (2131)
T ss_pred             --hhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccc-----cccccccc
Confidence              45688999999999999999999999999999888888889999999999999999999999977     4444  45


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHH
Q psy8763         223 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLI  302 (641)
Q Consensus       223 ~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  302 (641)
                      .|.+||+.|..+|+...++.|++.|.|+|..-+.+                          ..+.|.+++..++.+++..
T Consensus       891 lgisPLmlatmngh~~at~~ll~~gsdiNaqIeTN--------------------------rnTaltla~fqgr~evv~l  944 (2131)
T KOG4369|consen  891 LGISPLMLATMNGHQAATLSLLQPGSDINAQIETN--------------------------RNTALTLALFQGRPEVVFL  944 (2131)
T ss_pred             cCcchhhhhhhccccHHHHHHhcccchhccccccc--------------------------cccceeeccccCcchHHHH
Confidence            68899999999999999999999999988542221                          1233344444456666666


Q ss_pred             HhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccc--cCCCChHHHHHHcCChHHHHHHHhcccccc
Q psy8763         303 LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC--SNGYYPIHDAAKNASSKTMEVFLQFGESIG  380 (641)
Q Consensus       303 ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  380 (641)
                      ||.+..  ....+-+.|.|||+.++..|..++-+.|+ ..|++.+...  ...-|+|..++..|+...++.|+...+.+ 
T Consensus       945 LLa~~a--nvehRaktgltplme~AsgGyvdvg~~li-~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv- 1020 (2131)
T KOG4369|consen  945 LLAAQA--NVEHRAKTGLTPLMEMASGGYVDVGNLLI-AAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATV- 1020 (2131)
T ss_pred             HHHHhh--hhhhhcccCCcccchhhcCCccccchhhh-hcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccce-
Confidence            666655  33444455666666666666666666666 5566655322  23335556666666666666666654442 


Q ss_pred             CChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy8763         381 CSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN  448 (641)
Q Consensus       381 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~  448 (641)
                             ...+..|.|+|..|+..|....+..|++++++++..|....++++.|.+.|++++|+++..
T Consensus      1021 -------~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1021 -------RVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             -------ecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccC
Confidence                   3344456666666666666666666666666666666666666666666666666666654

>KOG0502|consensus

Probab=99.95  E-value=3e-28  Score=195.28  Aligned_cols=213  Identities=22%  Similarity=0.214  Sum_probs=193.4

Q ss_pred             ccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCccc
Q psy8763          28 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR  107 (641)
Q Consensus        28 ~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~  107 (641)
                      .+..|..-+-.|...|+.+++..+....++ .+...+..|+++++.|+-.|+..++..++.+            |++.|.
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~-~~~~t~p~g~~~~~v~ap~~s~~k~sttltN------------~~rgne  124 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPD-AIDETDPEGWSALLVAAPCGSVDKVSTTLTN------------GARGNE  124 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCC-CCCCCCchhhhhhhhcCCCCCcceeeeeecc------------cccCCc
Confidence            356777888889999999999999887764 3445677899999999999999999999999            899999


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCC
Q psy8763         108 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS  187 (641)
Q Consensus       108 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  187 (641)
                      .+..+++|+.+++.+.+.+++..+.+..          +|..|+.|+|||.||+..|++.+|++||+.|++++...+...
T Consensus       125 vs~~p~s~~slsVhql~L~~~~~~~~n~----------VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~re  194 (296)
T KOG0502|consen  125 VSLMPWSPLSLSVHQLHLDVVDLLVNNK----------VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRE  194 (296)
T ss_pred             cccccCChhhHHHHHHHHHHHHHHhhcc----------ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhh
Confidence            9999999999999999999888877653          466799999999999999999999999999999999988889


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q psy8763         188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR  267 (641)
Q Consensus       188 t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~  267 (641)
                      ++|.+|++.|..++|++|++.+++     +|..|.+|-|||-+|++.++.++++.|++.|++++..+..|.+++..|...
T Consensus       195 sALsLAt~ggytdiV~lLL~r~vd-----VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAVal  269 (296)
T KOG0502|consen  195 SALSLATRGGYTDIVELLLTREVD-----VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVAL  269 (296)
T ss_pred             hhHhHHhcCChHHHHHHHHhcCCC-----cceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHh
Confidence            999999999999999999999998     799999999999999999999999999999999999999999988888776


Q ss_pred             C
Q psy8763         268 G  268 (641)
Q Consensus       268 ~  268 (641)
                      |
T Consensus       270 G  270 (296)
T KOG0502|consen  270 G  270 (296)
T ss_pred             h
Confidence            6

>KOG0507|consensus

Probab=99.93  E-value=8.5e-26  Score=214.75  Aligned_cols=255  Identities=27%  Similarity=0.284  Sum_probs=213.1

Q ss_pred             HHHHHcCChHHHHHHHhc-----cccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy8763         358 HDAAKNASSKTMEVFLQF-----GESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  432 (641)
Q Consensus       358 ~~a~~~~~~~~~~~ll~~-----~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  432 (641)
                      ..|++.++.+.+..|++.     |.....++....+..|..|.|+||.|+.+|+.+++++|++..+-++..+..|.+|||
T Consensus         8 ~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plh   87 (854)
T KOG0507|consen    8 IDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLH   87 (854)
T ss_pred             HHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEE
Confidence            344455555555555442     222223344446677889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHH
Q psy8763         433 LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK  512 (641)
Q Consensus       433 ~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  512 (641)
                      +|+..|+.++++.++...     ..+|..+..|.||||.|+.+++.+++.+|+++|+|+-.++..+.|+|..|++-|..+
T Consensus        88 laaw~g~~e~vkmll~q~-----d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   88 LAAWNGNLEIVKMLLLQT-----DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             ehhhcCcchHHHHHHhcc-----cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence            999999999999999865     347889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCc--------cccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHH
Q psy8763         513 TVLTLVRNKANI--------LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA  584 (641)
Q Consensus       513 ~v~~Ll~~g~~~--------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  584 (641)
                      +++.|++.....        ..++..+.+|||.|+.++            +.++++.|++.|.|+|.....| |+||.|+
T Consensus       163 Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakng------------h~~~~~~ll~ag~din~~t~~g-talheaa  229 (854)
T KOG0507|consen  163 VVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNG------------HVECMQALLEAGFDINYTTEDG-TALHEAA  229 (854)
T ss_pred             HHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcc------------hHHHHHHHHhcCCCcccccccc-hhhhhHh
Confidence            999999873322        234567889999999999            9999999999999999776654 8999999


Q ss_pred             hcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhh---CCcceeeecee
Q psy8763         585 RYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE---GFHYSVSIFQV  633 (641)
Q Consensus       585 ~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~---~~~~~~~~l~~  633 (641)
                      ..|..++|++|++.|.+   ..++|.+|+|+|++-...   -..+++-+++.
T Consensus       230 lcgk~evvr~ll~~gin---~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  230 LCGKAEVVRFLLEIGIN---THIKNQHGQTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             hcCcchhhhHHHhhccc---cccccccchHHHHHHHhcchhhhhhhhhhhhc
Confidence            99999999999999988   889999999999865543   33444444433

>KOG0507|consensus

Probab=99.93  E-value=9.1e-26  Score=214.56  Aligned_cols=237  Identities=20%  Similarity=0.270  Sum_probs=207.2

Q ss_pred             cccccCCCceeeeccCCC------------cccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHH
Q psy8763           5 SVQSDNKNKSRLIPSSSG------------VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALH   72 (641)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~   72 (641)
                      |.+++|++.+.++++.++            -+.|..|..|+|+||-|+..|+.++++.|+++.+.+++-  +..|.+|||
T Consensus        10 a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~--d~kg~~plh   87 (854)
T KOG0507|consen   10 ACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLC--DTKGILPLH   87 (854)
T ss_pred             hhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhh--hccCcceEE
Confidence            456677766666664433            357888999999999999999999999999999976654  588999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCC
Q psy8763          73 IAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAE  152 (641)
Q Consensus        73 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  152 (641)
                      +|+..|+.++|++|+.+            +..+|..+..|.||||.|++.|+.+++.+|+.+|+++        -+++.+
T Consensus        88 laaw~g~~e~vkmll~q------------~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp--------~i~nns  147 (854)
T KOG0507|consen   88 LAAWNGNLEIVKMLLLQ------------TDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP--------FIRNNS  147 (854)
T ss_pred             ehhhcCcchHHHHHHhc------------ccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCc--------cccCcc
Confidence            99999999999999999            8889999999999999999999999999999999998        577899


Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCC--------CcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCC
Q psy8763         153 GNLPLHSAVHGGDFKAVELCLKSGAKI--------STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQK  224 (641)
Q Consensus       153 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~--------~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~  224 (641)
                      +.|+|..|++.|..++|+.|++...+.        ..++..+.+|||.|+++|+.++++.|++.+.+     ++..... 
T Consensus       148 ~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-----in~~t~~-  221 (854)
T KOG0507|consen  148 KETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-----INYTTED-  221 (854)
T ss_pred             cccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-----ccccccc-
Confidence            999999999999999999999873322        22445567899999999999999999999988     5766655 


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q psy8763         225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG  269 (641)
Q Consensus       225 ~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  269 (641)
                      -|+||.|+..|..++|.+|++.|.+...++.+|+|.+........
T Consensus       222 gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  222 GTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             chhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcch
Confidence            499999999999999999999999999999999999988766553

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.2e-25  Score=237.63  Aligned_cols=220  Identities=20%  Similarity=0.117  Sum_probs=184.4

Q ss_pred             cCChHHHHHHhcCCHHHHHHHHHC--CCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHH
Q psy8763         393 EGNLPLHSAVHGGDFKAVELCLKS--GAKISTQQFDLSTPVH-LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL  469 (641)
Q Consensus       393 ~~~t~l~~a~~~~~~~~~~~Ll~~--g~~~~~~~~~~~t~l~-~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L  469 (641)
                      .+...++.|++.|+.+.++.+++.  +.+++..|..|.|||| .|+..++.++++.|++.+.         .+..|.|||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~---------~~~~G~T~L   86 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC---------RGAVGDTLL   86 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC---------CCCcChHHH
Confidence            345789999999999999999999  8999999999999999 8999999999999998542         567799999


Q ss_pred             HHHHhcC---ChhHHHHHHHcCCC------CC----cCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccc--------
Q psy8763         470 HCAAMFD---RCDVVQYLIDEGAD------LN----VLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD--------  528 (641)
Q Consensus       470 ~~A~~~~---~~~~v~~Ll~~g~~------~~----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------  528 (641)
                      |.|+..+   ...++..+...+.+      ++    .....|.||||+|+.+++.+++++|+++|++++.++        
T Consensus        87 h~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~  166 (743)
T TIGR00870        87 HAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKS  166 (743)
T ss_pred             HHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcC
Confidence            9998732   22344555544422      11    123469999999999999999999999999998653        


Q ss_pred             ------cCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcC---------CHHHHH
Q psy8763         529 ------INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYG---------RYNTVK  593 (641)
Q Consensus       529 ------~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---------~~~~v~  593 (641)
                            ..|.||||.|+..+            +.+++++|+++|+|++.+|..|+||||+|+..+         ...+.+
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~------------~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~  234 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLG------------SPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYN  234 (743)
T ss_pred             CCCCcccccccHHHHHHHhC------------CHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence                  35899999999999            999999999999999999999999999999986         344677


Q ss_pred             HHHhcCCCcccc----ccCCCCCChhHHHHHhhCCcceeeecee
Q psy8763         594 KLLSSERGSFII----NESDGEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       594 ~Ll~~g~~~~~~----~~~d~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                      ++++.++.....    ++.|.+|.|||++|+..|+.+++++|++
T Consensus       235 ~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       235 FALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             HHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence            787777663323    6789999999999999999999999988

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.2e-24  Score=230.88  Aligned_cols=197  Identities=15%  Similarity=0.181  Sum_probs=171.4

Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHH
Q psy8763         406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI  485 (641)
Q Consensus       406 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  485 (641)
                      ..++-..+.+.+..  ..+..+.++|+.|+..|+.++++.|++.     +.++|..|..|.||||+|+..|+.+++++|+
T Consensus       506 ~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~-----G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll  578 (823)
T PLN03192        506 DLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKA-----KLDPDIGDSKGRTPLHIAASKGYEDCVLVLL  578 (823)
T ss_pred             cccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHC-----CCCCCCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence            44455555555543  2344567899999999999999999985     4458899999999999999999999999999


Q ss_pred             HcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhc
Q psy8763         486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINL  565 (641)
Q Consensus       486 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~  565 (641)
                      ++|++++.+|..|+||||+|+..|+.+++++|++.++..+.  ..|.++||.|+.++            +.++++.|+++
T Consensus       579 ~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g------------~~~~v~~Ll~~  644 (823)
T PLN03192        579 KHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRN------------DLTAMKELLKQ  644 (823)
T ss_pred             hcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhC------------CHHHHHHHHHC
Confidence            99999999999999999999999999999999988776543  45779999999999            99999999999


Q ss_pred             CCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCC-ChhHHHHHhhCCcc
Q psy8763         566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEG-LTPLHIASKEGFHY  626 (641)
Q Consensus       566 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g-~t~l~~A~~~~~~~  626 (641)
                      |+|+|.+|..|.||||+|+..|+.+++++|+++|++   ++..|..| .||++++......+
T Consensus       645 Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd---v~~~~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        645 GLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD---VDKANTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC---CCCCCCCCCCCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999   88888888 99999887654433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.4e-24  Score=230.38  Aligned_cols=192  Identities=20%  Similarity=0.203  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHh
Q psy8763          43 NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN  122 (641)
Q Consensus        43 g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~  122 (641)
                      .+.++-..+.+.+..    ..+..+.++|+.||..|+.++++.|++.            |++++..|..|.||||.|+..
T Consensus       505 ~~l~v~~ll~~~~~~----~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~------------G~d~n~~d~~G~TpLh~Aa~~  568 (823)
T PLN03192        505 HDLNVGDLLGDNGGE----HDDPNMASNLLTVASTGNAALLEELLKA------------KLDPDIGDSKGRTPLHIAASK  568 (823)
T ss_pred             ccccHHHHHhhcccc----cCCccchhHHHHHHHcCCHHHHHHHHHC------------CCCCCCCCCCCCCHHHHHHHc
Confidence            344444444444431    1223445556666666666666666655            555666666666666666666


Q ss_pred             CCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHH
Q psy8763         123 ASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV  202 (641)
Q Consensus       123 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv  202 (641)
                      |+.+++++|+++|+++        +..|.+|.||||+|+..|+.+++++|++.++..+.  ..+.++||.|+..|+.+++
T Consensus       569 g~~~~v~~Ll~~gadi--------n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v  638 (823)
T PLN03192        569 GYEDCVLVLLKHACNV--------HIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAM  638 (823)
T ss_pred             ChHHHHHHHHhcCCCC--------CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHH
Confidence            6666666666666554        34455566666666666666666666655544332  2344566666666666666


Q ss_pred             HHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCC-CCHHHHHH
Q psy8763         203 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK-RSPLLLAA  265 (641)
Q Consensus       203 ~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~-~t~l~~a~  265 (641)
                      +.|++++++     ++..|..|.||||.|+..|+.+++++|+++|++++..+..| .+|...+.
T Consensus       639 ~~Ll~~Gad-----in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~  697 (823)
T PLN03192        639 KELLKQGLN-----VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRE  697 (823)
T ss_pred             HHHHHCCCC-----CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence            666666555     45555666666666666666666666666666666555555 55555543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.1e-24  Score=230.50  Aligned_cols=232  Identities=22%  Similarity=0.179  Sum_probs=172.3

Q ss_pred             CChHHHHHHcCChHHHHHHHhc--cccccCChHHHhHHHhhcCChHHH-HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q psy8763         354 YYPIHDAAKNASSKTMEVFLQF--GESIGCSREEMISLFAAEGNLPLH-SAVHGGDFKAVELCLKSGAKISTQQFDLSTP  430 (641)
Q Consensus       354 ~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~t~l~-~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~  430 (641)
                      ...+..|+..|+.+.++.+++.  +.+        ++..+..|.|||| .|+..++.+++++|++.|+    .+..|.||
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~--------in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~   85 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLN--------INCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTL   85 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccC--------CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHH
Confidence            4456666666666666666665  333        2345568999999 8889999999999999887    56678999


Q ss_pred             HHHHHHcC---CHHHHHHHHhcCCCcc-----ccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCC-------
Q psy8763         431 VHLACSQG---ALDIVRLMFNLQPSEK-----LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-------  495 (641)
Q Consensus       431 l~~a~~~~---~~~~v~~ll~~~~~~~-----~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-------  495 (641)
                      ||.|+..+   ...++..+....+...     ..........|.||||+|+..++.++|++|+++|++++.++       
T Consensus        86 Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~  165 (743)
T TIGR00870        86 LHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK  165 (743)
T ss_pred             HHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhc
Confidence            99988622   2223333333222110     00011234579999999999999999999999999998653       


Q ss_pred             -------CCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCc
Q psy8763         496 -------KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC  568 (641)
Q Consensus       496 -------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~  568 (641)
                             ..|.||||.|+..++.+++++|+++|++++.+|..|+||||+|+..+..... ..+  ....+.+++++.++.
T Consensus       166 ~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~-~~~--l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       166 SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAE-YEE--LSCQMYNFALSLLDK  242 (743)
T ss_pred             CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHH-HHH--HHHHHHHHHHHHHhc
Confidence                   2589999999999999999999999999999999999999999988622110 000  033455666665544


Q ss_pred             ---c----cccCCCCCChHHHHHhcCCHHHHHHHHhcCC
Q psy8763         569 ---I----NLKNNSNESPLHLAARYGRYNTVKKLLSSER  600 (641)
Q Consensus       569 ---~----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  600 (641)
                         .    +..|..|.||||+|+..|+.+++++|++.+.
T Consensus       243 ~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~  281 (743)
T TIGR00870       243 LRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKY  281 (743)
T ss_pred             cCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHH
Confidence               3    6679999999999999999999999999653

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514|consensus

Probab=99.91  E-value=1.4e-24  Score=188.35  Aligned_cols=162  Identities=28%  Similarity=0.363  Sum_probs=144.1

Q ss_pred             ccccCCCCCCcHHHHHHhcCChhHHHHHHHcC-CCCCcCCCCCCCHHHHHHhc-----CCHHHHHHHHHcCCCcccc-cc
Q psy8763         457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG-ADLNVLDKEKRSPLLLAASR-----GGWKTVLTLVRNKANILLK-DI  529 (641)
Q Consensus       457 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~-----~~~~~v~~Ll~~g~~~~~~-~~  529 (641)
                      .+|..|.+|+|+||||+.+.++++|+.||+.| ++++..++.|+||+|+++..     .+.++|..|+..| ++|.+ ..
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ  338 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence            36788999999999999999999999999998 78999999999999998743     3567888888764 57766 47


Q ss_pred             CCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCC
Q psy8763         530 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESD  609 (641)
Q Consensus       530 ~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d  609 (641)
                      .|+|+|++|+.+|            ..++++.||..|+|+|.+|.+|-|+|+.|+..|+.++|++||......  +...|
T Consensus       339 ~gQTALMLAVSHG------------r~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd--~sLtD  404 (452)
T KOG0514|consen  339 HGQTALMLAVSHG------------RVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD--ISLTD  404 (452)
T ss_pred             hcchhhhhhhhcC------------cHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc--ceeec
Confidence            7999999999999            999999999999999999999999999999999999999999775332  78899


Q ss_pred             CCCChhHHHHHhhCCcceeeecee
Q psy8763         610 GEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       610 ~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                      .+|-|+|++|-+.||.+|.-+|-.
T Consensus       405 ~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  405 VDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             CCCchhhhhHHhcCchHHHHHHHH
Confidence            999999999999999999877743

>KOG0505|consensus

Probab=99.91  E-value=7.2e-24  Score=194.54  Aligned_cols=205  Identities=28%  Similarity=0.399  Sum_probs=175.1

Q ss_pred             hhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCc
Q psy8763          35 VLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYY  114 (641)
Q Consensus        35 ~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t  114 (641)
                      .+.-|+..|+++-|+.|+..|+  +++..+.+|.|+||.||...+.+||++|+++            |++++..|..|+|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga--~~~~~n~DglTalhq~~id~~~e~v~~l~e~------------ga~Vn~~d~e~wt  108 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGA--SPNLCNVDGLTALHQACIDDNLEMVKFLVEN------------GANVNAQDNEGWT  108 (527)
T ss_pred             HHHhccccccHHHHHHHhccCC--CccccCCccchhHHHHHhcccHHHHHHHHHh------------cCCccccccccCC
Confidence            4567888999999999999997  4578889999999999999999999999999            9999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHh-------------CC-C------------HHH
Q psy8763         115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVH-------------GG-D------------FKA  168 (641)
Q Consensus       115 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~-------------~g-~------------~~~  168 (641)
                      |||.|+..|+..++++|+.+|+++        ...+..|..|+..+..             .| .            .+=
T Consensus       109 Plhaaascg~~~i~~~li~~gA~~--------~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D  180 (527)
T KOG0505|consen  109 PLHAAASCGYLNIVEYLIQHGANL--------LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDD  180 (527)
T ss_pred             cchhhcccccHHHHHHHHHhhhhh--------hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHH
Confidence            999999999999999999999986        3344444444333211             11 1            112


Q ss_pred             HHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy8763         169 VELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA  248 (641)
Q Consensus       169 v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~  248 (641)
                      +...+..|...+..+..|.|+||+|+..|..++.++|++.+..     ++..|.+||||||.|+.+|..+++++|+++|+
T Consensus       181 ~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-----~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga  255 (527)
T KOG0505|consen  181 ARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS-----VNIKDYDGWTPLHAAAHWGQEDACELLVEHGA  255 (527)
T ss_pred             HHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC-----cccccccCCCcccHHHHhhhHhHHHHHHHhhc
Confidence            2234457888888888899999999999999999999999998     69999999999999999999999999999999


Q ss_pred             CCCccCCCCCCHHHHHHH
Q psy8763         249 DLNVLDKEKRSPLLLAAS  266 (641)
Q Consensus       249 ~~~~~~~~~~t~l~~a~~  266 (641)
                      +.+.....|.+|+.++..
T Consensus       256 ~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  256 DMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ccchhhhcCCCCccchhh
Confidence            999999999999987753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=3.1e-23  Score=174.33  Aligned_cols=145  Identities=17%  Similarity=0.164  Sum_probs=124.0

Q ss_pred             cccccccCCCCCCcHHHHHHhcCCh----hHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHH---HHHHHHHcCCCccc
Q psy8763         454 KLVCLNSTDAQKMTPLHCAAMFDRC----DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK---TVLTLVRNKANILL  526 (641)
Q Consensus       454 ~~~~~~~~~~~~~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---~v~~Ll~~g~~~~~  526 (641)
                      ++.+++..+..+.++||.|++.++.    +++++|++.|++++.++..|+||||+|+..++.+   ++++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4555666777888899999998887    6677788889988888999999999999887754   47899999999999


Q ss_pred             cc-cCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhh-cCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccc
Q psy8763         527 KD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN-LGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI  604 (641)
Q Consensus       527 ~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  604 (641)
                      ++ ..|.||||+|+.++            ..+++++|++ .|++++.++..|.||||+|+..++.+++++|+++|++   
T Consensus        89 ~d~~~g~TpLh~A~~~g------------~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---  153 (166)
T PHA02743         89 RELGTGNTLLHIAASTK------------NYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV---  153 (166)
T ss_pred             CCCCCCCcHHHHHHHhC------------CHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---
Confidence            88 58999999999998            8899999995 7999999999999999999999999999999999998   


Q ss_pred             cccCCCCCC
Q psy8763         605 INESDGEGL  613 (641)
Q Consensus       605 ~~~~d~~g~  613 (641)
                      ++.++..|.
T Consensus       154 ~~~~~~~~~  162 (166)
T PHA02743        154 CDDPLSIGL  162 (166)
T ss_pred             CCCcccCCc
Confidence            777776664

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=5.6e-23  Score=172.76  Aligned_cols=147  Identities=16%  Similarity=0.187  Sum_probs=128.0

Q ss_pred             cCCCcccccccCCCcchhhHHHhcCCH----HHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHH---HHHHHhcCC
Q psy8763          19 SSSGVNTRILNNKKQAVLHLATELNKV----PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC---ARILVSEQP   91 (641)
Q Consensus        19 ~~~~~~~~~~~~~~~t~L~~A~~~g~~----~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~i---v~~Ll~~~~   91 (641)
                      ...|++++..+..+.++||.|++.|++    +++++|++.|+  .++..|..|+||||+|+..|+.++   +++|+++  
T Consensus         7 ~~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~--~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~--   82 (166)
T PHA02743          7 AGNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGH--LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM--   82 (166)
T ss_pred             cccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcch--hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHc--
Confidence            457888888999999999999999998    66677888887  566778899999999999988654   7899998  


Q ss_pred             CcchhHhhhcCCCcccCC-CCCCcHHHHHHHhCCHHHHHHHHH-hcccCCCchhhhhccccCCCChHHHHHHhCCCHHHH
Q psy8763          92 ECDWIMVKDFGASLKRAC-SNGYYPIHDAAKNASSKTMEVFLQ-FGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAV  169 (641)
Q Consensus        92 ~~~~~~~~~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v  169 (641)
                                |++++.++ ..|.||||+|+..|+.+++++|++ .|+++        +..+..|.||||+|+..++.+++
T Consensus        83 ----------Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~--------~~~d~~g~tpL~~A~~~~~~~iv  144 (166)
T PHA02743         83 ----------GADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNL--------GAINYQHETAYHIAYKMRDRRMM  144 (166)
T ss_pred             ----------CCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCc--------cCcCCCCCCHHHHHHHcCCHHHH
Confidence                      99999988 489999999999999999999995 78886        45688999999999999999999


Q ss_pred             HHHHHcCCCCCcCCCCCC
Q psy8763         170 ELCLKSGAKISTQQFDLS  187 (641)
Q Consensus       170 ~~Ll~~g~~~~~~~~~~~  187 (641)
                      ++|+++|++++.++..|.
T Consensus       145 ~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        145 EILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHHcCCCCCCcccCCc
Confidence            999999999998887664

>KOG0514|consensus

Probab=99.89  E-value=5.9e-23  Score=178.30  Aligned_cols=162  Identities=25%  Similarity=0.320  Sum_probs=130.0

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHH-----hCCHHHHHHHHHhcc
Q psy8763          62 QGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAK-----NASSKTMEVFLQFGE  136 (641)
Q Consensus        62 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~-----~g~~~~v~~Ll~~~~  136 (641)
                      ..|.+|.|+||||+.++++++|+.||+.+           -++++..+.-|+||++.|+.     ..+.++|+.|+..| 
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~~LLDSg-----------vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-  330 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVSILLDSG-----------VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-  330 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHHHHhccC-----------cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-
Confidence            34677888888888888888888888873           47888888888888888774     35667888888765 


Q ss_pred             cCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccc
Q psy8763         137 SIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC  216 (641)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~  216 (641)
                      ++|..       -...|.|+|++|+.+|+.++|+.||.-|+|+|.+|.+|.|+|+.||.+||.||+++|+....-.    
T Consensus       331 nVNaK-------AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd----  399 (452)
T KOG0514|consen  331 DVNAK-------ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD----  399 (452)
T ss_pred             Ccchh-------hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc----
Confidence            33221       2457889999999999999999999999999999999999999999999999999988775544    


Q ss_pred             cccCCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy8763         217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDE  246 (641)
Q Consensus       217 ~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~  246 (641)
                      +...|.+|.|+|..|...|+.+|.-+|..+
T Consensus       400 ~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  400 ISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             ceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            567788899999999999998888877664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.4e-22  Score=182.75  Aligned_cols=154  Identities=19%  Similarity=0.176  Sum_probs=118.9

Q ss_pred             cccCCCCCCc-HHHHHHhcCChhHHHHHHHcCCCCCcCC----CCCCCHHHHHHhcCCHHHHHHHHHcCCCcccc-ccCC
Q psy8763         458 LNSTDAQKMT-PLHCAAMFDRCDVVQYLIDEGADLNVLD----KEKRSPLLLAASRGGWKTVLTLVRNKANILLK-DINR  531 (641)
Q Consensus       458 ~~~~~~~~~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g  531 (641)
                      +..+|..+.| +||.|+..++.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.. +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            3455666665 4566677788888888888888888763    57888888888888888888888888888875 4578


Q ss_pred             CchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCC
Q psy8763         532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGE  611 (641)
Q Consensus       532 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~  611 (641)
                      .||||+|+..+            ..+++++|+++|++++.+|..|.||||+|++.++.+++..+.  |..      .+..
T Consensus       105 ~TpLh~Aa~~~------------~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~------~~~~  164 (300)
T PHA02884        105 ITPLYISVLHG------------CLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE------ISNF  164 (300)
T ss_pred             CCHHHHHHHcC------------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc------cccc
Confidence            88888888888            888888888888888888888888888888888888776665  322      3556


Q ss_pred             CChhHHHHHhhCCcceeeeceee
Q psy8763         612 GLTPLHIASKEGFHYSVSIFQVT  634 (641)
Q Consensus       612 g~t~l~~A~~~~~~~~~~~l~~~  634 (641)
                      +.+|..++   ++.+++++|.++
T Consensus       165 ~~~~~~~~---~n~ei~~~Lish  184 (300)
T PHA02884        165 YKHPKKIL---INFDILKILVSH  184 (300)
T ss_pred             ccChhhhh---ccHHHHHHHHHH
Confidence            67777765   356677766554

>KOG0505|consensus

Probab=99.88  E-value=2.3e-22  Score=184.69  Aligned_cols=206  Identities=27%  Similarity=0.402  Sum_probs=182.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcC
Q psy8763         397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD  476 (641)
Q Consensus       397 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~  476 (641)
                      .+..|+..+..+-+..|+..|++++..+.+|.|++|.++...+.+||+++++.     +..+|..|..++||||.|+-.+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~-----ga~Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVEN-----GANVNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHh-----cCCccccccccCCcchhhcccc
Confidence            45668889999999999999999999999999999999999999999999995     4559999999999999999999


Q ss_pred             ChhHHHHHHHcCCCCCcCCCCCCCHHHHHH-------------hcCC-------------HHHHHHHHHcCCCccccccC
Q psy8763         477 RCDVVQYLIDEGADLNVLDKEKRSPLLLAA-------------SRGG-------------WKTVLTLVRNKANILLKDIN  530 (641)
Q Consensus       477 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-------------~~~~-------------~~~v~~Ll~~g~~~~~~~~~  530 (641)
                      +..++++|+++|+++-.++..|..|+..+.             ..|-             .+-+...+..|.+.+.++..
T Consensus       118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~r  197 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHAR  197 (527)
T ss_pred             cHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccc
Confidence            999999999999999888888888766541             1110             11223334478889999888


Q ss_pred             CCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCC
Q psy8763         531 RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDG  610 (641)
Q Consensus       531 g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~  610 (641)
                      |-|.||.|+.+|            ..++.++|+++|.+++.+|.+|.||||.|+-=|..++.++|+++|++   .+..+.
T Consensus       198 G~T~lHvAaa~G------------y~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~---~d~~t~  262 (527)
T KOG0505|consen  198 GATALHVAAANG------------YTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD---MDAKTK  262 (527)
T ss_pred             cchHHHHHHhhh------------HHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc---cchhhh
Confidence            999999999999            99999999999999999999999999999999999999999999999   899999


Q ss_pred             CCChhHHHHHhh
Q psy8763         611 EGLTPLHIASKE  622 (641)
Q Consensus       611 ~g~t~l~~A~~~  622 (641)
                      .|.||+++|..-
T Consensus       263 ~g~~p~dv~dee  274 (527)
T KOG0505|consen  263 MGETPLDVADEE  274 (527)
T ss_pred             cCCCCccchhhh
Confidence            999999988763

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=5.3e-22  Score=168.03  Aligned_cols=131  Identities=21%  Similarity=0.191  Sum_probs=115.7

Q ss_pred             ccCCCCCCcHHHHHHhcCChhHHHHHHH------cCCCCCcCCCCCCCHHHHHHhcCC----HHHHHHHHHcCCCccccc
Q psy8763         459 NSTDAQKMTPLHCAAMFDRCDVVQYLID------EGADLNVLDKEKRSPLLLAASRGG----WKTVLTLVRNKANILLKD  528 (641)
Q Consensus       459 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~  528 (641)
                      +.++..|.||||+|+..|+.++++.|+.      .|++++.+|..|+||||+|+..++    .+++++|+++|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            4567789999999999999999998854      368889899999999999999888    588899999999999988


Q ss_pred             c-CCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhh-cCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         529 I-NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN-LGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       529 ~-~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      . .|.||||+|+..+            +.+++++|+. .|++++.+|..|.||||+|+..++.+++++|++.++.
T Consensus        95 ~~~g~TpLh~A~~~~------------~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRR------------DHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcC------------CHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5 8999999999999            8899999997 5899999999999999999999999999999988765

>KOG0512|consensus

Probab=99.87  E-value=1.2e-21  Score=151.33  Aligned_cols=143  Identities=24%  Similarity=0.253  Sum_probs=107.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcC
Q psy8763         430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG  509 (641)
Q Consensus       430 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  509 (641)
                      .+..|+..+....|+.|++..+.    .+|.+|.+++||||.|+.+|+.++|+.|+..|++++.+...|+||||-||+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an----~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKAN----HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccc----cccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence            45677777888888888874433    47888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhh-cCCcccccCCCCCChHHHHHhcC
Q psy8763         510 GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN-LGACINLKNNSNESPLHLAARYG  587 (641)
Q Consensus       510 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~  587 (641)
                      +.+++.+||++|+|+|.......||||+++-+.+           ....+.+|+. .+.++...+..+.||+.+|-+-+
T Consensus       142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn-----------~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRN-----------SRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             chhHHHHHHhccCcccccccccchhhHHhhcccc-----------hHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            8888888888888888887777888888876653           3344555544 55777777777888888776543

>KOG0512|consensus

Probab=99.87  E-value=1.7e-21  Score=150.40  Aligned_cols=140  Identities=29%  Similarity=0.255  Sum_probs=93.1

Q ss_pred             HHHHHHhcCChhHHHHHHHcCCC-CCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCch
Q psy8763         468 PLHCAAMFDRCDVVQYLIDEGAD-LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI  546 (641)
Q Consensus       468 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  546 (641)
                      .+.+|+..+....|+-||+-.++ +|.+|.+|.||||-|+.+|+.+|++.|+.+|++++.+...|+||||-||...    
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn----  141 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN----  141 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc----
Confidence            45566667777777776666544 6667777777777777777777777777777777777777777777777666    


Q ss_pred             hhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHH--hcCCHHHHHHHHhc-CCCccccccCCCCCChhHHHHHhhC
Q psy8763         547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA--RYGRYNTVKKLLSS-ERGSFIINESDGEGLTPLHIASKEG  623 (641)
Q Consensus       547 ~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~l~~A~~~~  623 (641)
                              ..+++.+|+++|+|+|+......||||+|+  ++- ...+++|+.. +.+   ...++..+.||+++|...|
T Consensus       142 --------N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~-r~t~~~Ll~dryi~---pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  142 --------NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNS-RDTLELLLHDRYIH---PGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             --------chhHHHHHHhccCcccccccccchhhHHhhcccch-HHHHHHHhhccccC---hhhhcCccchHHHHHHHhh
Confidence                    677777777777777777777777777776  443 2334444433 333   4556667777777776664

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=2.2e-21  Score=164.29  Aligned_cols=134  Identities=19%  Similarity=0.246  Sum_probs=70.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCC----HHHHHHHHHhcccCC
Q psy8763          64 GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS----SKTMEVFLQFGESIG  139 (641)
Q Consensus        64 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~  139 (641)
                      +..|.||||+|++.|+.++++.|+.......      .|++++.++..|+||||+|+..|+    .+++++|+++|+++ 
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~------~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-   90 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDC------HAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-   90 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccch------hhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-
Confidence            3445555555555555555555432110000      044555555555555555555555    35555555555554 


Q ss_pred             CchhhhhccccC-CCChHHHHHHhCCCHHHHHHHHH-cCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q psy8763         140 CSREEMISLFDA-EGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS  211 (641)
Q Consensus       140 ~~~~~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~  211 (641)
                             +..+. .|.||||+|+..++.+++++|++ .|++++..+..|+|||++|+..++.+++++|+++++.
T Consensus        91 -------n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         91 -------NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             -------CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   22332 45566666666666666665554 3555555555566666666666666666665555433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1.3e-21  Score=163.69  Aligned_cols=131  Identities=17%  Similarity=0.135  Sum_probs=108.9

Q ss_pred             ccccCCCCCCcHHHHHHhcCChhHHHHHHHcCC--C-----CCcCCCCCCCHHHHHHhcCCH---HHHHHHHHcCCCccc
Q psy8763         457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA--D-----LNVLDKEKRSPLLLAASRGGW---KTVLTLVRNKANILL  526 (641)
Q Consensus       457 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~--~-----~~~~~~~g~t~L~~A~~~~~~---~~v~~Ll~~g~~~~~  526 (641)
                      ..+..|..|.||||+|++.|+  +++++...+.  +     ++.++..|+||||+|+..++.   +++++|+++|++++.
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~   86 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING   86 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc
Confidence            356678889999999999987  3444443332  2     234578899999999998876   468889999999999


Q ss_pred             cc-cCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhh-cCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         527 KD-INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN-LGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       527 ~~-~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      ++ ..|.||||+|+..+            +.+++++|+. .|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        87 ~~~~~g~T~Lh~A~~~~------------~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQ------------NYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cCCCCCCcHHHHHHHhC------------CHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            87 58999999999998            8899999997 4899999999999999999999999999999999987

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.1e-20  Score=170.41  Aligned_cols=155  Identities=16%  Similarity=0.220  Sum_probs=132.6

Q ss_pred             ccCCCCCch-HHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCC----CCCCcHHHHHHHhCCHHHHHHHHHhc
Q psy8763          61 LQGGEHGRT-ALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRAC----SNGYYPIHDAAKNASSKTMEVFLQFG  135 (641)
Q Consensus        61 ~~~~~~g~t-~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~~  135 (641)
                      ...|..|+| +||.|++.|+.+++++|+++            |++++..+    ..|.||||+|+..|+.+++++|+++|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~------------GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G   93 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKL------------GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG   93 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHC------------CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344566665 57777788999999999999            99999874    58999999999999999999999999


Q ss_pred             ccCCCchhhhhccc-cCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccc
Q psy8763         136 ESIGCSREEMISLF-DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL  214 (641)
Q Consensus       136 ~~~~~~~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~  214 (641)
                      ++++        .. +..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++..+...      
T Consensus        94 ADVN--------~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------  159 (300)
T PHA02884         94 ADVN--------RYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN------  159 (300)
T ss_pred             CCcC--------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------
Confidence            9984        33 45799999999999999999999999999999999999999999999999988666532      


Q ss_pred             cccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy8763         215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA  248 (641)
Q Consensus       215 ~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~  248 (641)
                          ..+..+.+|++++   ++.+++++|+++++
T Consensus       160 ----~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        160 ----EISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             ----cccccccChhhhh---ccHHHHHHHHHHHH
Confidence                2355667888865   46899999999987

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=2.6e-21  Score=161.83  Aligned_cols=134  Identities=19%  Similarity=0.198  Sum_probs=100.3

Q ss_pred             cccccCCCcchhhHHHhcCCHHHHHHHHhcCCcc-----ccccCCCCCchHHHHHHHcCCH---HHHHHHHhcCCCcchh
Q psy8763          25 TRILNNKKQAVLHLATELNKVPILLILLQYKDMI-----DILQGGEHGRTALHIAAIYDFD---ECARILVSEQPECDWI   96 (641)
Q Consensus        25 ~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~-----~~~~~~~~g~t~L~~A~~~g~~---~iv~~Ll~~~~~~~~~   96 (641)
                      .+.+|..|.||||+|++.|+.  ++++...+...     .++..+..|.||||+|+..|+.   +++++|++.       
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-------   80 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW-------   80 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc-------
Confidence            466788889999999998873  33333322211     1334567888888888888876   467788887       


Q ss_pred             HhhhcCCCcccCC-CCCCcHHHHHHHhCCHHHHHHHHH-hcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHH
Q psy8763          97 MVKDFGASLKRAC-SNGYYPIHDAAKNASSKTMEVFLQ-FGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK  174 (641)
Q Consensus        97 ~~~~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~  174 (641)
                           |++++.++ ..|.||||+|+..|+.+++++|++ .|+++        +..+..|.||||+|+..|+.+++++|++
T Consensus        81 -----gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~--------n~~~~~g~tpL~~A~~~~~~~i~~~Ll~  147 (154)
T PHA02736         81 -----GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM--------EILNYAFKTPYYVACERHDAKMMNILRA  147 (154)
T ss_pred             -----CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC--------ccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                 88888887 478888888888888888888887 47775        4567788888888888888888888888


Q ss_pred             cCCCCC
Q psy8763         175 SGAKIS  180 (641)
Q Consensus       175 ~g~~~~  180 (641)
                      +|++.+
T Consensus       148 ~ga~~~  153 (154)
T PHA02736        148 KGAQCK  153 (154)
T ss_pred             cCCCCC
Confidence            887754

>KOG0195|consensus

Probab=99.82  E-value=7.4e-20  Score=153.91  Aligned_cols=153  Identities=20%  Similarity=0.238  Sum_probs=129.8

Q ss_pred             cccCCCceeeeccCCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHH
Q psy8763           7 QSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL   86 (641)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~L   86 (641)
                      .-|+.=-+|+++...+.|.|.-|..|.+|||||++.|+..+++.|+++|+.  +|..+....||||.|+.+||.+||+.|
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgar--vn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR--VNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccc--cccccCCCCcchhhhhhcccHHHHHHH
Confidence            456667789999999999999999999999999999999999999999994  455666678999999999999999999


Q ss_pred             HhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCH
Q psy8763          87 VSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDF  166 (641)
Q Consensus        87 l~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~  166 (641)
                      +++            .+|+|..+..|.||||+||-.|...+.+-|+..|+.+        ++.+..|.|||..|--.-.-
T Consensus        87 l~~------------kadvnavnehgntplhyacfwgydqiaedli~~ga~v--------~icnk~g~tpldkakp~l~~  146 (448)
T KOG0195|consen   87 LSR------------KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV--------NICNKKGMTPLDKAKPMLKN  146 (448)
T ss_pred             HHH------------hcccchhhccCCCchhhhhhhcHHHHHHHHHhcccee--------eecccCCCCchhhhchHHHH
Confidence            999            9999999999999999999999999999999999987        67789999999877432222


Q ss_pred             HHHHHHHHcCCCCCc
Q psy8763         167 KAVELCLKSGAKIST  181 (641)
Q Consensus       167 ~~v~~Ll~~g~~~~~  181 (641)
                      .+.+.--++|.+++.
T Consensus       147 ~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  147 TLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHHHHHhCCCCCc
Confidence            233333356766653

>KOG3676|consensus

Probab=99.82  E-value=1.1e-19  Score=176.08  Aligned_cols=191  Identities=24%  Similarity=0.281  Sum_probs=163.0

Q ss_pred             hHHHHHHhcCCHHHHHHHHHCC---------CCCCCCCCCCCcHHHHHHH---cCCHHHHHHHHhcCCCccccccccCCC
Q psy8763         396 LPLHSAVHGGDFKAVELCLKSG---------AKISTQQFDLSTPVHLACS---QGALDIVRLMFNLQPSEKLVCLNSTDA  463 (641)
Q Consensus       396 t~l~~a~~~~~~~~~~~Ll~~g---------~~~~~~~~~~~t~l~~a~~---~~~~~~v~~ll~~~~~~~~~~~~~~~~  463 (641)
                      .++..+...+..+....++..+         -+++.+..-|+|.||.|.-   .++.++++.|++..|.--.........
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4666677777777766666544         4566667789999999986   445689999999877532223344567


Q ss_pred             CCCcHHHHHHhcCChhHHHHHHHcCCCCCcCC---------C--------------CCCCHHHHHHhcCCHHHHHHHHHc
Q psy8763         464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD---------K--------------EKRSPLLLAASRGGWKTVLTLVRN  520 (641)
Q Consensus       464 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~---------~--------------~g~t~L~~A~~~~~~~~v~~Ll~~  520 (641)
                      .|.||||.|+.+.+.++|++|++.||||+++.         .              -|..||..|+-.++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            89999999999999999999999999998742         1              267899999999999999999999


Q ss_pred             CCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCc--ccccCCCCCChHHHHHhcCCHHHHHHHHhc
Q psy8763         521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC--INLKNNSNESPLHLAARYGRYNTVKKLLSS  598 (641)
Q Consensus       521 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  598 (641)
                      |+|++.+|..|+|.||..+..-            ..++-.+++++|++  ...+|+.|.|||-+|++-|+.++.+.+++.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~------------~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHF------------VTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHH------------HHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999996            89999999999999  889999999999999999999999999998

>KOG0195|consensus

Probab=99.81  E-value=1.9e-19  Score=151.45  Aligned_cols=151  Identities=27%  Similarity=0.363  Sum_probs=123.7

Q ss_pred             HHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHH
Q psy8763         435 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV  514 (641)
Q Consensus       435 ~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  514 (641)
                      |+.|+.-.|+..++    ...-+.|.-|..|.+|||+|++.|+..+++.|+.+|+.+|..+....||||+|+..|+-++|
T Consensus         8 cregna~qvrlwld----~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen    8 CREGNAFQVRLWLD----DTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             hhcCCeEEEEEEec----CcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHH
Confidence            34444434444443    23345788899999999999999999999999999999999998889999999999999999


Q ss_pred             HHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHH
Q psy8763         515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKK  594 (641)
Q Consensus       515 ~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  594 (641)
                      +.|+++.+|+|..|+.|.|||||||..|            .-.+.+-|+..|+-++.-|++|.|||..|-..-..-+.+.
T Consensus        84 qkll~~kadvnavnehgntplhyacfwg------------ydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~  151 (448)
T KOG0195|consen   84 QKLLSRKADVNAVNEHGNTPLHYACFWG------------YDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEI  151 (448)
T ss_pred             HHHHHHhcccchhhccCCCchhhhhhhc------------HHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHH
Confidence            9999999999999999999999999999            8889999999999999999999999998854322223333


Q ss_pred             HHhcCCC
Q psy8763         595 LLSSERG  601 (641)
Q Consensus       595 Ll~~g~~  601 (641)
                      --+.|..
T Consensus       152 aek~gq~  158 (448)
T KOG0195|consen  152 AEKHGQS  158 (448)
T ss_pred             HHHhCCC
Confidence            3345554

>KOG3676|consensus

Probab=99.78  E-value=3e-18  Score=166.30  Aligned_cols=212  Identities=21%  Similarity=0.224  Sum_probs=174.4

Q ss_pred             cccccCCCcchhhHHHhcCCHHHHHHHHhcCC-------ccccccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCcc
Q psy8763          25 TRILNNKKQAVLHLATELNKVPILLILLQYKD-------MIDILQGGEHGRTALHIAAIY---DFDECARILVSEQPECD   94 (641)
Q Consensus        25 ~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~-------~~~~~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~   94 (641)
                      ++..+...+.++..|...+.++....+...+.       ..+++.+...|.|.||.|..+   ++-++++.|++..|+..
T Consensus        94 p~~l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~li  173 (782)
T KOG3676|consen   94 PNILKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLI  173 (782)
T ss_pred             cchhhhcchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHh
Confidence            44455555688899999999999999987662       346778888999999999974   56799999999876532


Q ss_pred             hhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccc---------------cCCCChHHHH
Q psy8763          95 WIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLF---------------DAEGNLPLHS  159 (641)
Q Consensus        95 ~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~---------------~~~~~t~L~~  159 (641)
                             ..-.......|.||||.|+.+.+.++|++|++.|||++...-.-+-..               =..|..||.+
T Consensus       174 -------nd~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSf  246 (782)
T KOG3676|consen  174 -------NDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSF  246 (782)
T ss_pred             -------hhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHH
Confidence                   111122236799999999999999999999999999975322111111               1356789999


Q ss_pred             HHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHH
Q psy8763         160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDV  239 (641)
Q Consensus       160 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~i  239 (641)
                      |+-.++.++|++|+++|+|++.+|..|+|.||..+..-..++-.+++++++..   .....+.+|.|||..|+..|..++
T Consensus       247 AAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~---l~~v~N~qgLTPLtLAaklGk~em  323 (782)
T KOG3676|consen  247 AACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA---LEHVRNNQGLTPLTLAAKLGKKEM  323 (782)
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc---cccccccCCCChHHHHHHhhhHHH
Confidence            99999999999999999999999999999999999999999999999999882   136778999999999999999999


Q ss_pred             HHHHHHc
Q psy8763         240 VQYLIDE  246 (641)
Q Consensus       240 v~~Ll~~  246 (641)
                      .+.+++.
T Consensus       324 f~~ile~  330 (782)
T KOG3676|consen  324 FQHILER  330 (782)
T ss_pred             HHHHHHh
Confidence            9999998

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=7.9e-18  Score=126.07  Aligned_cols=89  Identities=33%  Similarity=0.487  Sum_probs=61.6

Q ss_pred             HHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhh
Q psy8763         469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE  548 (641)
Q Consensus       469 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  548 (641)
                      ||+|++.++.+++++|++.|.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.++      
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENG------   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTT------
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcC------
Confidence            5677777777777777777666654    666777777777777777777777777777777777777777777      


Q ss_pred             HHHHHHHHHHHHHHhhcCCcccccC
Q psy8763         549 FAEEVAAVFLGENLINLGACINLKN  573 (641)
Q Consensus       549 ~~~~~~~~~~~~~Ll~~g~~~~~~~  573 (641)
                            ..+++++|+++|++++.+|
T Consensus        71 ------~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   71 ------NLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             ------HHHHHHHHHHTTT-TTSS-
T ss_pred             ------CHHHHHHHHHcCCCCCCcC
Confidence                  7777777777777776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=8.1e-18  Score=126.01  Aligned_cols=89  Identities=30%  Similarity=0.391  Sum_probs=82.3

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHH
Q psy8763         502 LLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLH  581 (641)
Q Consensus       502 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  581 (641)
                      ||+|++.++.+++++|++.+.+++.    |.||||+|+..+            +.+++++|+++|++++.+|..|.||||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~------------~~~~~~~Ll~~g~~~~~~~~~g~t~L~   64 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENG------------NLEIVKLLLENGADINSQDKNGNTALH   64 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTT------------THHHHHHHHHTTTCTT-BSTTSSBHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcC------------CHHHHHHHHHhcccccccCCCCCCHHH
Confidence            7999999999999999999998877    899999999999            999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCccccccCC
Q psy8763         582 LAARYGRYNTVKKLLSSERGSFIINESD  609 (641)
Q Consensus       582 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~d  609 (641)
                      +|+.+|+.+++++|+++|++   ++.+|
T Consensus        65 ~A~~~~~~~~~~~Ll~~g~~---~~~~n   89 (89)
T PF12796_consen   65 YAAENGNLEIVKLLLEHGAD---VNIRN   89 (89)
T ss_dssp             HHHHTTHHHHHHHHHHTTT----TTSS-
T ss_pred             HHHHcCCHHHHHHHHHcCCC---CCCcC
Confidence            99999999999999999998   66654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=5.2e-17  Score=132.21  Aligned_cols=123  Identities=37%  Similarity=0.542  Sum_probs=92.4

Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhc
Q psy8763         462 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN  541 (641)
Q Consensus       462 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  541 (641)
                      +..|.||||+|+..++.+++++|+++|.+.+..+..|.||+++|+..++.+++++|+++|++++..+..|.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            45677777777777777777777777777666777777777777777777777777777777777777777777777777


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHH
Q psy8763         542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLL  596 (641)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  596 (641)
                      +            ..+++++|+++|.+++..+..|.||+++|...++.+++++|+
T Consensus        84 ~------------~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 G------------NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             C------------cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            7            677777777777777777777777777777777777777664

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.73  E-value=3.8e-17  Score=133.04  Aligned_cols=124  Identities=39%  Similarity=0.557  Sum_probs=117.3

Q ss_pred             CCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccC
Q psy8763         494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN  573 (641)
Q Consensus       494 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~  573 (641)
                      .+..|.|||++|+..++.+++++|++.|.+.+..+..|.||+|+|+..+            ..+++++|+++|++++..+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~------------~~~~~~~ll~~~~~~~~~~   70 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNG------------HLEIVKLLLEKGADVNARD   70 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC------------CHHHHHHHHHcCCCccccC
Confidence            4578999999999999999999999999999999999999999999999            8899999999999999999


Q ss_pred             CCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeece
Q psy8763         574 NSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ  632 (641)
Q Consensus       574 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~  632 (641)
                      ..|.||+|.|+..++.+++++|++.|.+   ++..|..|.||+++|...++.+++++|+
T Consensus        71 ~~~~~~l~~a~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          71 KDGNTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999999987   7889999999999999999999888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.70  E-value=1.2e-17  Score=114.26  Aligned_cols=100  Identities=20%  Similarity=0.307  Sum_probs=91.9

Q ss_pred             CccccccCCCceeeeccCCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHH
Q psy8763           3 LLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC   82 (641)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~i   82 (641)
                      +|++|+|..+-++.... .|.|+|... .|++|||+|+-+|+++++++|+..|+  +++..|..|.|||..|+..||.++
T Consensus         7 ~W~vkNG~~DeVk~~v~-~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA--~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    7 AWNVKNGEIDEVKQSVN-EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGA--NIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhhhccCcHHHHHHHHH-ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhcc--ccCCccccCCcHHHHHHHHhhHHH
Confidence            68999999999999987 778998777 89999999999999999999999998  777899999999999999999999


Q ss_pred             HHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHH
Q psy8763          83 ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD  118 (641)
Q Consensus        83 v~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~  118 (641)
                      |++|+++            |++......+|.+.+..
T Consensus        83 VklLL~~------------GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   83 VKLLLQN------------GADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHc------------CcccceeCCCchhHHhh
Confidence            9999999            99999998888766543

>KOG4214|consensus

Probab=99.67  E-value=2.8e-16  Score=107.61  Aligned_cols=103  Identities=23%  Similarity=0.207  Sum_probs=80.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChH
Q psy8763         501 PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL  580 (641)
Q Consensus       501 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  580 (641)
                      .+.+++++|.++-|+..+..|.++|..= .|++|||+|+.+|            +++++++|+..|++++.+|+.|-|||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~G------------Ql~ilefli~iGA~i~~kDKygITPL   71 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYG------------QLSILEFLISIGANIQDKDKYGITPL   71 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcc------------hHHHHHHHHHhccccCCccccCCcHH
Confidence            4566778888888887777787776554 7788888888888            88888888888888888888888888


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHH
Q psy8763         581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA  619 (641)
Q Consensus       581 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A  619 (641)
                      ..|+..|+.++|++||+.||+   -.+..-+|.+.++-+
T Consensus        72 LsAvwEGH~~cVklLL~~GAd---rt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   72 LSAVWEGHRDCVKLLLQNGAD---RTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHhhHHHHHHHHHcCcc---cceeCCCchhHHhhc
Confidence            888888888888888888888   455555666666533

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=4.1e-14  Score=129.47  Aligned_cols=129  Identities=33%  Similarity=0.383  Sum_probs=120.7

Q ss_pred             ccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCC-----HHHHHHHHHcCC---CccccccC
Q psy8763         459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG-----WKTVLTLVRNKA---NILLKDIN  530 (641)
Q Consensus       459 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~---~~~~~~~~  530 (641)
                      ...+..+.++++.++..+..+++++++..|++++.++..|.||||+|+..++     .+++++|++.|+   ..+.+|..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            4456668899999999999999999999999999999999999999999999     999999999999   56666999


Q ss_pred             CCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcC
Q psy8763         531 RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSE  599 (641)
Q Consensus       531 g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  599 (641)
                      |.||||+|+..+            +.+++++|++.|++++.++..|.|+++.|+..++.++++.+++.+
T Consensus       147 g~tpl~~A~~~~------------~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNG------------DADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcC------------chHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999            889999999999999999999999999999999999999999975

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=4.3e-15  Score=98.15  Aligned_cols=55  Identities=42%  Similarity=0.663  Sum_probs=33.6

Q ss_pred             HhhcC-CcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHH
Q psy8763         562 LINLG-ACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA  619 (641)
Q Consensus       562 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A  619 (641)
                      |+++| ++++.+|..|+||||+|+.+|+.++|++|++.|++   ++.+|..|+|||++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d---~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD---PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC---CCCCcCCCCCHHHhC
Confidence            67788 99999999999999999999999999999999999   999999999999998

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=2.6e-13  Score=124.14  Aligned_cols=132  Identities=30%  Similarity=0.436  Sum_probs=120.3

Q ss_pred             ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCC-----HHHHHHHHH
Q psy8763          59 DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS-----SKTMEVFLQ  133 (641)
Q Consensus        59 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~  133 (641)
                      .....+..+.++++.|+..+..+++++++..            |++++.++..|.||||.|+..|+     .++++.|++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~  132 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLAS------------GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE  132 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHc------------CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHH
Confidence            3445567789999999999999999999998            99999999999999999999999     999999999


Q ss_pred             hcc--cCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy8763         134 FGE--SIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ  209 (641)
Q Consensus       134 ~~~--~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~  209 (641)
                      .|+  +.       .+..+..|.||||+|+..|+.+++++|++.|++++..+..|.|+++.|+..++.++++.++..+
T Consensus       133 ~g~~~~~-------~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         133 AGADLDV-------NNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCC-------ccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999  33       3566899999999999999999999999999999999999999999999999999999999864

>KOG1710|consensus

Probab=99.51  E-value=4.1e-14  Score=119.61  Aligned_cols=120  Identities=24%  Similarity=0.230  Sum_probs=68.0

Q ss_pred             CcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCc
Q psy8763         466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH  545 (641)
Q Consensus       466 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  545 (641)
                      .+||..++..+..+-...|++.--++|.+|..|.+||..|+.+|+.++++.|+++|+|+|..                  
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~------------------   74 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK------------------   74 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc------------------
Confidence            35555566555555555555543345555666666666666666666666666666655532                  


Q ss_pred             hhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCc
Q psy8763         546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH  625 (641)
Q Consensus       546 ~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~  625 (641)
                                                ++..++||||+|+.+|+.++-++|++.|+.   ....|+-|+|+-++|+.-|+.
T Consensus        75 --------------------------qhg~~YTpLmFAALSGn~dvcrllldaGa~---~~~vNsvgrTAaqmAAFVG~H  125 (396)
T KOG1710|consen   75 --------------------------QHGTLYTPLMFAALSGNQDVCRLLLDAGAR---MYLVNSVGRTAAQMAAFVGHH  125 (396)
T ss_pred             --------------------------cccccccHHHHHHHcCCchHHHHHHhccCc---cccccchhhhHHHHHHHhcch
Confidence                                      223455566666666666666666666655   444555556666666666665


Q ss_pred             ceeeece
Q psy8763         626 YSVSIFQ  632 (641)
Q Consensus       626 ~~~~~l~  632 (641)
                      +.|..+-
T Consensus       126 ~CV~iIN  132 (396)
T KOG1710|consen  126 ECVAIIN  132 (396)
T ss_pred             HHHHHHh
Confidence            5555443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.50  E-value=4.9e-14  Score=92.93  Aligned_cols=54  Identities=31%  Similarity=0.388  Sum_probs=45.5

Q ss_pred             CcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHH
Q psy8763          32 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV   87 (641)
Q Consensus        32 ~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll   87 (641)
                      |+||||+|++.|+.+++++|+++|.  +++..|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~--din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGA--DINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTS--GTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999999999999986  67788999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=5.6e-14  Score=92.83  Aligned_cols=55  Identities=36%  Similarity=0.434  Sum_probs=27.9

Q ss_pred             HHHcC-CCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHH
Q psy8763         484 LIDEG-ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL  538 (641)
Q Consensus       484 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  538 (641)
                      |+++| ++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56666 77888888888888888888888888888877888888888888888775

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.46  E-value=3.2e-13  Score=139.41  Aligned_cols=106  Identities=25%  Similarity=0.246  Sum_probs=93.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChH
Q psy8763         501 PLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL  580 (641)
Q Consensus       501 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  580 (641)
                      .|+.|+..|+.++++.|+++|+++|.+|..|.||||+|+..+            +.+++++|+++|++++.+|..|.|||
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g------------~~eiv~~LL~~Gadvn~~d~~G~TpL  152 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANG------------HVQVVRVLLEFGADPTLLDKDGKTPL  152 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCC------------CHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            477888999999999999999999999999999999999999            89999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhc-------CCCccccccCCCCCChhHHHHHh
Q psy8763         581 HLAARYGRYNTVKKLLSS-------ERGSFIINESDGEGLTPLHIASK  621 (641)
Q Consensus       581 ~~A~~~~~~~~v~~Ll~~-------g~~~~~~~~~d~~g~t~l~~A~~  621 (641)
                      |+|+..|+.+++++|+++       |++   .+..+..|.+|+..+..
T Consensus       153 h~A~~~g~~~iv~~Ll~~~~~~~~~ga~---~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        153 ELAEENGFREVVQLLSRHSQCHFELGAN---AKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             HHHHHCCcHHHHHHHHhCCCcccccCCC---CCccccCCCCccchhhh
Confidence            999999999999999988       777   67777788888765543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.44  E-value=3.1e-13  Score=89.08  Aligned_cols=54  Identities=35%  Similarity=0.485  Sum_probs=46.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHH
Q psy8763          67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL  132 (641)
Q Consensus        67 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  132 (641)
                      |+||||+|++.|+.+++++|+++            |.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~------------~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH------------GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT------------TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC------------CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            78999999999999999999999            9999999999999999999999999999986

...

>KOG1710|consensus

Probab=99.43  E-value=1.3e-12  Score=110.73  Aligned_cols=120  Identities=20%  Similarity=0.186  Sum_probs=75.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhc
Q psy8763          68 RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS  147 (641)
Q Consensus        68 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  147 (641)
                      ..||.-|+-.|..+-+..|++.            ...++..|..|+++|..|+..|+.++++.|++.|+++|.       
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~------------vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~-------   73 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST------------VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVND-------   73 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH------------hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCc-------
Confidence            3466666666666666666654            334566666666666666666666666666666666642       


Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHH
Q psy8763         148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF  206 (641)
Q Consensus       148 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll  206 (641)
                      ..+..+.||||+|+.+|+.++.++|++.|+.+...+.-|+|+-.+|+.-|+.++|..+-
T Consensus        74 ~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   74 KQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             ccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            23445566666666666666666666666666666666666666666666666665543

>KOG0515|consensus

Probab=99.42  E-value=5.2e-13  Score=122.70  Aligned_cols=119  Identities=19%  Similarity=0.186  Sum_probs=97.9

Q ss_pred             hhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCc
Q psy8763          35 VLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYY  114 (641)
Q Consensus        35 ~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t  114 (641)
                      .|.-|+..|.+|+|+..+..-.  |+.+-+..|.|+||-|+..||.+||++|++.            |+++|..|++|||
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~--DpSqpNdEGITaLHNAiCaghyeIVkFLi~~------------ganVNa~DSdGWT  618 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVT--DPSQPNDEGITALHNAICAGHYEIVKFLIEF------------GANVNAADSDGWT  618 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhc--CCCCCCccchhHHhhhhhcchhHHHHHHHhc------------CCcccCccCCCCc
Confidence            3456889999999999987554  5667778999999999999999999999998            9999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHH--HhCCCHHHHHHHHH
Q psy8763         115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSA--VHGGDFKAVELCLK  174 (641)
Q Consensus       115 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~  174 (641)
                      |||+|+..+++-+++.|++.|+-+-       ...-.++.|+..-+  ...|...|.++|-.
T Consensus       619 PLHCAASCNnv~~ckqLVe~Gaavf-------AsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  619 PLHCAASCNNVPMCKQLVESGAAVF-------ASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhhhhhcCchHHHHHHHhccceEE-------eeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999999998763       22234556665543  25667777777753

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.42  E-value=7.8e-13  Score=136.53  Aligned_cols=102  Identities=27%  Similarity=0.295  Sum_probs=57.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcC
Q psy8763         430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG  509 (641)
Q Consensus       430 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  509 (641)
                      .|+.|+..|+.+.++.|++.+     .+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~G-----adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGG-----ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            355555556666666555532     234555555556666666666666666666666665555555666666666555


Q ss_pred             CHHHHHHHHHc-------CCCccccccCCCchhH
Q psy8763         510 GWKTVLTLVRN-------KANILLKDINRRNILH  536 (641)
Q Consensus       510 ~~~~v~~Ll~~-------g~~~~~~~~~g~t~l~  536 (641)
                      +.+++++|+++       |++++..+..|.+|+.
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCCCccccCCCCccc
Confidence            56666666555       5555555555555433

>KOG0515|consensus

Probab=99.39  E-value=1.2e-12  Score=120.46  Aligned_cols=117  Identities=23%  Similarity=0.186  Sum_probs=94.3

Q ss_pred             HHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhh
Q psy8763         469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE  548 (641)
Q Consensus       469 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  548 (641)
                      |.-|+..|-+++|+-.+..--|+..-+..|.|+||-|+..|+.+||+||++.|+++|..|.+||||||+|+.++      
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCN------  627 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCN------  627 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcC------
Confidence            45677788888888888777778777888888888888888888888888888888888888888888888888      


Q ss_pred             HHHHHHHHHHHHHHhhcCCcccccC-CCCCChHHHHH--hcCCHHHHHHHHh
Q psy8763         549 FAEEVAAVFLGENLINLGACINLKN-NSNESPLHLAA--RYGRYNTVKKLLS  597 (641)
Q Consensus       549 ~~~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~--~~~~~~~v~~Ll~  597 (641)
                            +.-+.+.|++.|+-+.+.. .++.||..-+-  ..|...|.+||..
T Consensus       628 ------nv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 ------NVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             ------chHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence                  8888888888888777655 56778776654  3467778888763

>KOG0783|consensus

Probab=98.86  E-value=1.1e-09  Score=106.93  Aligned_cols=88  Identities=34%  Similarity=0.400  Sum_probs=79.0

Q ss_pred             CCcc-cccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhh
Q psy8763          21 SGVN-TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVK   99 (641)
Q Consensus        21 ~~~~-~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~   99 (641)
                      .+-| .|++|..|+|+||+|+..|..+++++|+++|.++.+ +..+.|+||||.|+..|+++++-+|+++          
T Consensus        40 ~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~v-qD~ESG~taLHRaiyyG~idca~lLL~~----------  108 (1267)
T KOG0783|consen   40 SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFV-QDEESGYTALHRAIYYGNIDCASLLLSK----------  108 (1267)
T ss_pred             hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeee-ccccccchHhhHhhhhchHHHHHHHHhc----------
Confidence            4444 699999999999999999999999999999985443 3346799999999999999999999999          


Q ss_pred             hcCCCcccCCCCCCcHHHHHHH
Q psy8763         100 DFGASLKRACSNGYYPIHDAAK  121 (641)
Q Consensus       100 ~~g~~~~~~~~~g~t~L~~A~~  121 (641)
                        |+.+..+|.+|..||+..++
T Consensus       109 --g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  109 --GRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             --CCceEEecccCCCHHHHHhh
Confidence              99999999999999999887

>KOG0783|consensus

Probab=98.84  E-value=1.6e-09  Score=105.89  Aligned_cols=83  Identities=23%  Similarity=0.255  Sum_probs=78.6

Q ss_pred             cccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCC-CCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhH
Q psy8763         458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK-EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILH  536 (641)
Q Consensus       458 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  536 (641)
                      .|..|..|+|+||+|+..+..++++||+++|+|++.+|. .|+||||-|+..|+++++-.||++|+.+...|++|..||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            678899999999999999999999999999999999985 6999999999999999999999999999999999999999


Q ss_pred             HHhh
Q psy8763         537 LLVL  540 (641)
Q Consensus       537 ~a~~  540 (641)
                      +.+.
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8886

>KOG0506|consensus

Probab=98.80  E-value=5.2e-09  Score=95.67  Aligned_cols=93  Identities=20%  Similarity=0.246  Sum_probs=85.3

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhh-cCCcccccCC
Q psy8763         496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN-LGACINLKNN  574 (641)
Q Consensus       496 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~-~g~~~~~~~~  574 (641)
                      .++..++++|++.|.+..++-+.-.|.|++..|.+.+|+||.|+..|            +.+++++|++ .+.+++.+|.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG------------~v~v~kfl~~~~kv~~~~kDR  571 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEG------------HVEVVKFLLNACKVDPDPKDR  571 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccC------------ceeHHHHHHHHHcCCCChhhc
Confidence            45667899999999999999999999999999999999999999999            9999999998 5699999999


Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCC
Q psy8763         575 SNESPLHLAARYGRYNTVKKLLSSER  600 (641)
Q Consensus       575 ~g~t~L~~A~~~~~~~~v~~Ll~~g~  600 (641)
                      +|+|||.-|...++.+++++|-+..-
T Consensus       572 w~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  572 WGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            99999999999999999999987754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.80  E-value=7.5e-09  Score=57.41  Aligned_cols=28  Identities=46%  Similarity=0.745  Sum_probs=14.2

Q ss_pred             CCcHHHHHHhcCChhHHHHHHHcCCCCC
Q psy8763         465 KMTPLHCAAMFDRCDVVQYLIDEGADLN  492 (641)
Q Consensus       465 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~  492 (641)
                      |+||||+|+..|+.+++++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4455555555555555555555555444

>KOG0506|consensus

Probab=98.79  E-value=7.9e-09  Score=94.53  Aligned_cols=97  Identities=23%  Similarity=0.365  Sum_probs=88.2

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcH
Q psy8763         148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP  227 (641)
Q Consensus       148 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~  227 (641)
                      ..+..+.-++++|++.|++..++.+.-.|.|++.+|.+.+|+||+|+..|+.+++++|++.-...    ++.+|..|+||
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~----~~~kDRw~rtP  576 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD----PDPKDRWGRTP  576 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCC----CChhhccCCCc
Confidence            34456678899999999999999999999999999999999999999999999999999876554    78899999999


Q ss_pred             HHHHHhcCcHHHHHHHHHcCC
Q psy8763         228 LHCAAMFDRCDVVQYLIDEGA  248 (641)
Q Consensus       228 L~~A~~~~~~~iv~~Ll~~g~  248 (641)
                      |.-|...++.+++++|-+.-.
T Consensus       577 lDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             chHhHhcCcHHHHHHHHHHhc
Confidence            999999999999999988644

>PF13606 Ank_3: Ankyrin repeat

Probab=98.79  E-value=8.6e-09  Score=57.17  Aligned_cols=29  Identities=38%  Similarity=0.690  Sum_probs=25.0

Q ss_pred             CCChHHHHHHhCCCHHHHHHHHHcCCCCC
Q psy8763         152 EGNLPLHSAVHGGDFKAVELCLKSGAKIS  180 (641)
Q Consensus       152 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~  180 (641)
                      +|+||||+||..|+.++|++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47889999999999999999999888876

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.70  E-value=2.4e-08  Score=57.53  Aligned_cols=32  Identities=41%  Similarity=0.568  Sum_probs=29.6

Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCCCccccccCC
Q psy8763         575 SNESPLHLAARYGRYNTVKKLLSSERGSFIINESD  609 (641)
Q Consensus       575 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d  609 (641)
                      +|+||||+|+.+|+.+++++|+++|++   ++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD---INARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC---TTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC---CCCCC
Confidence            489999999999999999999999999   77766

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522|consensus

Probab=98.69  E-value=5.7e-08  Score=90.81  Aligned_cols=90  Identities=29%  Similarity=0.332  Sum_probs=81.2

Q ss_pred             chhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCC
Q psy8763          34 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGY  113 (641)
Q Consensus        34 t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~  113 (641)
                      .|||+++...+.+-.+..+.......++.+|..|+||||.|++.|+.+.++.|+..            |+++..++.+|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a------------~Adv~~kN~~gW   89 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA------------GADVSIKNNEGW   89 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc------------CCCccccccccc
Confidence            57999999998888777665556667889999999999999999999999999999            999999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhc
Q psy8763         114 YPIHDAAKNASSKTMEVFLQFG  135 (641)
Q Consensus       114 t~L~~A~~~g~~~~v~~Ll~~~  135 (641)
                      +|||.|+..|+.+++..++.+.
T Consensus        90 s~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   90 SPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             cHHHHHHHcCCHHHHHHHHHHh
Confidence            9999999999999999888763

>KOG0782|consensus

Probab=98.69  E-value=6.1e-08  Score=90.84  Aligned_cols=119  Identities=28%  Similarity=0.314  Sum_probs=99.6

Q ss_pred             HHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCC
Q psy8763         398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR  477 (641)
Q Consensus       398 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~  477 (641)
                      +..|+..+++--++.....|.++-.++.+..+.||+|+..|+-++|+|+++++|..-   ++..+..|.|+||.|+-.++
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~el---ld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSEL---LDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHH---HHHHhhhhhHHHHHHHHhcc
Confidence            445666666666667777888888888888999999999999999999999888742   45667889999999999999


Q ss_pred             hhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHH
Q psy8763         478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR  519 (641)
Q Consensus       478 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  519 (641)
                      ..+.++|++.|+.+.-.|..|.||-.-|-+.++.++..+|-.
T Consensus       947 r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             hHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            999999999999988889999999999999999998888854

>KOG0818|consensus

Probab=98.66  E-value=8.9e-08  Score=88.27  Aligned_cols=84  Identities=21%  Similarity=0.209  Sum_probs=66.0

Q ss_pred             HHHHHhcCChhHHHHHHHcCCCCCcCC-CCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchh
Q psy8763         469 LHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK  547 (641)
Q Consensus       469 L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  547 (641)
                      ||-.++.++.+..--||..||++|..+ ..|.||||+|++.|+..-+++|+-+|+|++..|.+|.||+.+|=..|     
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~g-----  211 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGG-----  211 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcC-----
Confidence            777888888887777788888888765 36788888888888888888888888888888888888888887777     


Q ss_pred             hHHHHHHHHHHHHHHhh
Q psy8763         548 EFAEEVAAVFLGENLIN  564 (641)
Q Consensus       548 ~~~~~~~~~~~~~~Ll~  564 (641)
                             +-++.+.|++
T Consensus       212 -------H~~laeRl~e  221 (669)
T KOG0818|consen  212 -------HHELAERLVE  221 (669)
T ss_pred             -------chHHHHHHHH
Confidence                   6666666665

>KOG0782|consensus

Probab=98.66  E-value=4e-08  Score=91.98  Aligned_cols=101  Identities=25%  Similarity=0.244  Sum_probs=92.7

Q ss_pred             CcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhc
Q psy8763          22 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDF  101 (641)
Q Consensus        22 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  101 (641)
                      |-+.=..+.+..|.||+|+.-|+-|+|+|++++|.+--++..+..|.|+||.|+..++..+.++|++.            
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda------------  956 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA------------  956 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc------------
Confidence            45566678888999999999999999999999998655678889999999999999999999999999            


Q ss_pred             CCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHh
Q psy8763         102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQF  134 (641)
Q Consensus       102 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  134 (641)
                      |+.+...|..|.||-..|-+.|+.++.-||-..
T Consensus       957 gasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  957 GASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             chhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999999999998764

>KOG0818|consensus

Probab=98.65  E-value=1.1e-07  Score=87.74  Aligned_cols=89  Identities=24%  Similarity=0.247  Sum_probs=80.2

Q ss_pred             chhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCC
Q psy8763          34 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGY  113 (641)
Q Consensus        34 t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~  113 (641)
                      .-||-.++.|+++..-.|+..|+.+++- .-..|.||||.|++.|+.--+++|+-.            |||+...|.+|+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~-hpekg~TpLHvAAk~Gq~~Q~ElL~vY------------GAD~~a~d~~Gm  201 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFF-HPEKGNTPLHVAAKAGQILQAELLAVY------------GADPGAQDSSGM  201 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCC-CcccCCchhHHHHhccchhhhhHHhhc------------cCCCCCCCCCCC
Confidence            4699999999999999999999965542 235699999999999999999999998            999999999999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhc
Q psy8763         114 YPIHDAAKNASSKTMEVFLQFG  135 (641)
Q Consensus       114 t~L~~A~~~g~~~~v~~Ll~~~  135 (641)
                      ||+.+|-..||-++.+-|++..
T Consensus       202 tP~~~AR~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVEIQ  223 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHHHH
Confidence            9999999999999999998754

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.64  E-value=4.8e-08  Score=56.22  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCC
Q psy8763          66 HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRAC  109 (641)
Q Consensus        66 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~  109 (641)
                      +|.||||+|+..|+.+++++|+++            |++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~------------ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH------------GADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT------------TSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC------------cCCCCCCC
Confidence            589999999999999999999999            88888765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705|consensus

Probab=98.59  E-value=1.4e-07  Score=88.76  Aligned_cols=92  Identities=25%  Similarity=0.300  Sum_probs=83.1

Q ss_pred             hhhHHHhcCCHHHHHHHHhcCCcccccc--CCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCC
Q psy8763          35 VLHLATELNKVPILLILLQYKDMIDILQ--GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNG  112 (641)
Q Consensus        35 ~L~~A~~~g~~~~v~~ll~~g~~~~~~~--~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g  112 (641)
                      -|.-|+...++..+-+|+.+|....++.  .+.+|+|+||+||+.|++.+.++|+-+            |+|+..+|.+|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy------------g~dv~~rda~g  694 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY------------GVDVMARDAHG  694 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh------------CccceecccCC
Confidence            4667888889999999999998765554  456789999999999999999999998            99999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhcccC
Q psy8763         113 YYPIHDAAKNASSKTMEVFLQFGESI  138 (641)
Q Consensus       113 ~t~L~~A~~~g~~~~v~~Ll~~~~~~  138 (641)
                      +|+|.+|-+.|..+++..|+.+|...
T Consensus       695 ~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  695 RTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             chhhhhHhhcccHHHHHHHHHcCCCc
Confidence            99999999999999999999999765

>KOG3609|consensus

Probab=98.53  E-value=3.2e-07  Score=91.39  Aligned_cols=135  Identities=24%  Similarity=0.192  Sum_probs=106.3

Q ss_pred             CCCcchhhHHHhcCCHHHHHHHHhcCCc--cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCccc
Q psy8763          30 NKKQAVLHLATELNKVPILLILLQYKDM--IDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR  107 (641)
Q Consensus        30 ~~~~t~L~~A~~~g~~~~v~~ll~~g~~--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~  107 (641)
                      ..+.--...|++.|+...|+..++....  +++|..|.-|+++|+.|+.+-+.|++++|+++            +...  
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~------------~~~~--   88 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT------------SSEE--   88 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC------------cccc--
Confidence            3444566789999999999999987665  78899999999999999999999999999998            2222  


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhh--hccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCC
Q psy8763         108 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEM--ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ  183 (641)
Q Consensus       108 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  183 (641)
                           ..+|..|+..|..+.|+.++.+-..........  ....-..+.|||..||..+++|+++.|+++|+.+..+.
T Consensus        89 -----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   89 -----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             -----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence                 478999999999999999998755432111000  01112456899999999999999999999998876543

>KOG0705|consensus

Probab=98.49  E-value=4.6e-07  Score=85.43  Aligned_cols=95  Identities=22%  Similarity=0.185  Sum_probs=82.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhc
Q psy8763         429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR  508 (641)
Q Consensus       429 t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  508 (641)
                      .-|..|+...+...+-.|+.++... .++-...+..|+|+||+|++.|+..+.++|+=+|+|+-.+|..|+|+|.||-+.
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~-e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a  704 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSRE-EVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCch-hhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc
Confidence            3467788888888888999877653 333445677889999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCc
Q psy8763         509 GGWKTVLTLVRNKANI  524 (641)
Q Consensus       509 ~~~~~v~~Ll~~g~~~  524 (641)
                      |.-++++.|+.+|...
T Consensus       705 ~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPD  720 (749)
T ss_pred             ccHHHHHHHHHcCCCc
Confidence            9999999999999864

>KOG3609|consensus

Probab=98.47  E-value=1.7e-07  Score=93.38  Aligned_cols=127  Identities=16%  Similarity=0.148  Sum_probs=100.2

Q ss_pred             CccccccCCCceeeeccCCC---cccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCC
Q psy8763           3 LLSVQSDNKNKSRLIPSSSG---VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF   79 (641)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~   79 (641)
                      ++|+..|+...++.++....   .|+|..|.=|+++|+.|+...+.+++++|++++...    .     .+|..|+..|.
T Consensus        30 L~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~----g-----dALL~aI~~~~  100 (822)
T KOG3609|consen   30 LLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE----G-----DALLLAIAVGS  100 (822)
T ss_pred             HHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc----c-----hHHHHHHHHHH
Confidence            35778888888888884444   589999999999999999999999999999986422    2     38999999999


Q ss_pred             HHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCC
Q psy8763          80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC  140 (641)
Q Consensus        80 ~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  140 (641)
                      .++|++++.+.....-...  .+......-..+.|||..||..++.|+++.|+.+|+.+..
T Consensus       101 v~~VE~ll~~~~~~~~~~~--~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  101 VPLVELLLVHFVDAPYLER--SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHhcccccchhcc--ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            9999999998322211100  1223333446778999999999999999999999998853

>KOG2384|consensus

Probab=98.34  E-value=1.7e-06  Score=69.51  Aligned_cols=86  Identities=27%  Similarity=0.257  Sum_probs=70.8

Q ss_pred             ccccCCCCCCcHHHHHHhcCChhHHHHHHHcC-CCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchh
Q psy8763         457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG-ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNIL  535 (641)
Q Consensus       457 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  535 (641)
                      ++|.+|..|+|||++|+..|+.+.+.||+++| +.|.+.+..|.+++.+|-+.|..++++.|.+...+-...+....++-
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~e~   83 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRDEA   83 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCCCc
Confidence            48899999999999999999999999999999 89999999999999999999999999999998665555544443333


Q ss_pred             HHHhhcC
Q psy8763         536 HLLVLNG  542 (641)
Q Consensus       536 ~~a~~~~  542 (641)
                      -..|...
T Consensus        84 lfyCE~C   90 (223)
T KOG2384|consen   84 LFYCEVC   90 (223)
T ss_pred             cchhhhh
Confidence            3334333

>KOG0521|consensus

Probab=98.31  E-value=4.9e-07  Score=93.19  Aligned_cols=97  Identities=25%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             cCCCcccc--ccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHh
Q psy8763         520 NKANILLK--DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS  597 (641)
Q Consensus       520 ~g~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  597 (641)
                      +++++|..  -..|.|+||.|+..+            ...+.++|+++|+++|.+|..|+||||.+...|+...+..|++
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~------------~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~  710 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTG------------DSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLK  710 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccc------------hHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcc
Confidence            34444442  356789999999998            8889999999999999999999999999999999999999999


Q ss_pred             cCCCccccccCCCCCChhHHHHHhhCCcceeeec
Q psy8763         598 SERGSFIINESDGEGLTPLHIASKEGFHYSVSIF  631 (641)
Q Consensus       598 ~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l  631 (641)
                      .|++   .+..|.+|++||++|....+.+++=++
T Consensus       711 ~~a~---~~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  711 RGAD---PNAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cccc---ccccCccCcchhhHHhhhccccHHHHH
Confidence            9998   788899999999999888555554333

>KOG2384|consensus

Probab=98.30  E-value=1.5e-06  Score=69.73  Aligned_cols=67  Identities=13%  Similarity=-0.074  Sum_probs=62.3

Q ss_pred             CcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy8763          22 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSE   89 (641)
Q Consensus        22 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~   89 (641)
                      +.|+|..|..|||+|+.|+..|+.+.|.||+.+|+ ..+-..|..|.+++.+|=+.|..++++.|.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~-a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGV-AFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCc-ccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            56899999999999999999999999999999995 35667889999999999999999999999987

>KOG0522|consensus

Probab=98.27  E-value=1.9e-06  Score=80.99  Aligned_cols=76  Identities=25%  Similarity=0.289  Sum_probs=62.4

Q ss_pred             cHHHHHHhcCChhHHHHHHH--cCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcC
Q psy8763         467 TPLHCAAMFDRCDVVQYLID--EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG  542 (641)
Q Consensus       467 t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  542 (641)
                      -|||+++.....+-...++.  .+..++..|..|.||||+|+..|+.+.++.|+.+|+++..+|..|++|||.|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcC
Confidence            45888888877665554333  35567778888999999999999999999999999999999999999999999988

>KOG0521|consensus

Probab=98.20  E-value=2.4e-06  Score=88.24  Aligned_cols=91  Identities=24%  Similarity=0.176  Sum_probs=82.7

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCC
Q psy8763         496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS  575 (641)
Q Consensus       496 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~  575 (641)
                      ..|.|+||.|+..+..-+.++|++.|+++|..|..|+||+|.+...|            +......|+++|+++++.+..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g------------~~~~~~~ll~~~a~~~a~~~~  721 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASG------------HTSIACLLLKRGADPNAFDPD  721 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhc------------ccchhhhhccccccccccCcc
Confidence            46899999999999999999999999999999999999999999999            888888999999999999999


Q ss_pred             CCChHHHHHhcCCHHHHHHHHhc
Q psy8763         576 NESPLHLAARYGRYNTVKKLLSS  598 (641)
Q Consensus       576 g~t~L~~A~~~~~~~~v~~Ll~~  598 (641)
                      |++||++|....+.+++-+|.-.
T Consensus       722 ~~~~l~~a~~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  722 GKLPLDIAMEAANADIVLLLRLA  744 (785)
T ss_pred             CcchhhHHhhhccccHHHHHhhh
Confidence            99999999877777776666544

>KOG0511|consensus

Probab=98.14  E-value=4.9e-06  Score=74.49  Aligned_cols=70  Identities=24%  Similarity=0.166  Sum_probs=59.3

Q ss_pred             chhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCC
Q psy8763         533 NILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEG  612 (641)
Q Consensus       533 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g  612 (641)
                      --|..||..|            +.+.+++|++.|.++|++|+...+||.+|+..|+.++||+||++||-   -..-..+|
T Consensus        38 ~elceacR~G------------D~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi---C~rdtf~G  102 (516)
T KOG0511|consen   38 GELCEACRAG------------DVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI---CSRDTFDG  102 (516)
T ss_pred             HHHHHHhhcc------------cHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc---ccccccCc
Confidence            3467888888            99999999999999999999999999999999999999999999995   23334456


Q ss_pred             ChhHH
Q psy8763         613 LTPLH  617 (641)
Q Consensus       613 ~t~l~  617 (641)
                      ..++-
T Consensus       103 ~RC~Y  107 (516)
T KOG0511|consen  103 DRCHY  107 (516)
T ss_pred             chhhh
Confidence            55543

>KOG0511|consensus

Probab=98.09  E-value=1e-05  Score=72.52  Aligned_cols=59  Identities=24%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             ChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCc
Q psy8763         154 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE  212 (641)
Q Consensus       154 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~  212 (641)
                      +--|..||+.|+++.|+.|++.|.++|..|....+||.+|+..||.++|++|+++|+-.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            45689999999999999999999999999999999999999999999999999999863

>KOG0520|consensus

Probab=97.94  E-value=8e-06  Score=83.76  Aligned_cols=129  Identities=18%  Similarity=0.103  Sum_probs=91.2

Q ss_pred             CcCCCCCCCHHHHHHhcCCHHHHHHHHHc-CCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHh-hcCCcc
Q psy8763         492 NVLDKEKRSPLLLAASRGGWKTVLTLVRN-KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLI-NLGACI  569 (641)
Q Consensus       492 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll-~~g~~~  569 (641)
                      ......|++.+|+++..++..+++.+++- |......|.+|...+|+++.-+             .+..-+|+ -.|..+
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg-------------~ewA~ll~~~~~~ai  634 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALG-------------YEWAFLPISADGVAI  634 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcC-------------CceeEEEEeeccccc
Confidence            33456788888888888888888888875 6666666777777888754444             33333333 356778


Q ss_pred             cccCCCCCChHHHHHhcCCHHHHHHHHhcCCCcc---ccccCCCCCChhHHHHHhhCCcceeeecee
Q psy8763         570 NLKNNSNESPLHLAARYGRYNTVKKLLSSERGSF---IINESDGEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       570 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                      +.+|..|+||||.|+.+|+..++.-|.+.|+++.   +..-.+-.|.|+-++|..+|+..+..+|-+
T Consensus       635 ~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  635 DIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             ccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            8888888888888888888888888887777632   112223348888888888888888777744

>KOG0520|consensus

Probab=97.83  E-value=2.4e-05  Score=80.46  Aligned_cols=128  Identities=21%  Similarity=0.216  Sum_probs=105.2

Q ss_pred             cccCCCCCCcHHHHHHhcCChhHHHHHHHc-CCCCCcCCCCCCCHHHHHHhcCCHHHHHHHH-HcCCCccccccCCCchh
Q psy8763         458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTVLTLV-RNKANILLKDINRRNIL  535 (641)
Q Consensus       458 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l  535 (641)
                      .......|.+.+|+++..+...+++.+++- |......+..|.-.+|+++..+ ++..-+|+ -.|..++.+|..|+|||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg-~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALG-YEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcC-CceeEEEEeecccccccccCCCCccc
Confidence            455667789999999999999999999986 7666777888888999855444 45444444 45888999999999999


Q ss_pred             HHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCccccc------CCCCCChHHHHHhcCCHHHHHHHHhc
Q psy8763         536 HLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLK------NNSNESPLHLAARYGRYNTVKKLLSS  598 (641)
Q Consensus       536 ~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~  598 (641)
                      |+|...|            +..++..|++.|+++++.      +-.|.|+-.+|..+|+..+.-+|-++
T Consensus       646 ~wAa~~G------------~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRG------------REKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcC------------HHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999            999999999988776543      34699999999999999998888776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.36  E-value=0.0013  Score=55.05  Aligned_cols=119  Identities=18%  Similarity=0.161  Sum_probs=81.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcC
Q psy8763         430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG  509 (641)
Q Consensus       430 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  509 (641)
                      .|.-|+...+++-+.-++..          ..  .-.++|.+|+.++..+++-+|+.+- +....|        +|....
T Consensus       156 sledAV~AsN~~~i~~~Vtd----------Kk--dA~~Am~~si~~~K~dva~~lls~f-~ft~~d--------v~~~~~  214 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTD----------KK--DAHQAMWLSIGNAKEDVALYLLSKF-NFTKQD--------VASMEK  214 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcc----------hH--HHHHHHHHHhcccHHHHHHHHHhhc-ceecch--------hhhcCc
Confidence            46667777777766666541          11  1346778888888888888888752 111111        222222


Q ss_pred             CHHHHHHHHHc-CCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcC-Cccccc---CCCCCChHHHHH
Q psy8763         510 GWKTVLTLVRN-KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG-ACINLK---NNSNESPLHLAA  584 (641)
Q Consensus       510 ~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g-~~~~~~---~~~g~t~L~~A~  584 (641)
                      .+.-++++|+. |+                                +..++++++++| +++|.+   -..|.|.|.-|.
T Consensus       215 ~~ydieY~LS~h~a--------------------------------~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~  262 (284)
T PF06128_consen  215 ELYDIEYLLSEHSA--------------------------------SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAM  262 (284)
T ss_pred             chhhHHHHHhhcCC--------------------------------cHHHHHHHHhccccccchhhhccCCcchHHHhHH
Confidence            34455666543 33                                667889999999 777753   578999999999


Q ss_pred             hcCCHHHHHHHHhcCCC
Q psy8763         585 RYGRYNTVKKLLSSERG  601 (641)
Q Consensus       585 ~~~~~~~v~~Ll~~g~~  601 (641)
                      ++++.+++.+||++||-
T Consensus       263 Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  263 KYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hcCcHHHHHHHHHcCcc
Confidence            99999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505|consensus

Probab=97.04  E-value=0.00064  Score=63.86  Aligned_cols=62  Identities=26%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             HHHHHHHhhcCCccccc------CCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHH
Q psy8763         556 VFLGENLINLGACINLK------NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIAS  620 (641)
Q Consensus       556 ~~~~~~Ll~~g~~~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~  620 (641)
                      ...|++|.+++++.|..      +..--|+||+|+..|..++|.+||+.|+|   ...+|..|+||.+++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D---p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD---PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC---chhcccCCCCcccccc
Confidence            45788899988777642      34467999999999999999999999999   7889999999999887

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.93  E-value=0.024  Score=46.42  Aligned_cols=139  Identities=13%  Similarity=0.003  Sum_probs=92.6

Q ss_pred             chhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCC
Q psy8763          34 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGY  113 (641)
Q Consensus        34 t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~  113 (641)
                      ..|.-|++++-+.|++++-+....     .-....+-+..||+..+.|+|++.-.+-               ..  .+-.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~-----~~~~~q~LFElAC~~qkydiV~WI~qnL---------------~i--~~~~  105 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLEN-----ERYLNQELFELACEEQKYDIVKWIGQNL---------------HI--YNPE  105 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhc-----chhHHHHHHHHHHHHccccHHHHHhhcc---------------CC--CCch
Confidence            456778888889988888775421     1134667788999999999999985541               11  2233


Q ss_pred             cHHHHHHHhCCHHHH----HHHHHhcccC-CCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCc
Q psy8763         114 YPIHDAAKNASSKTM----EVFLQFGESI-GCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST  188 (641)
Q Consensus       114 t~L~~A~~~g~~~~v----~~Ll~~~~~~-~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t  188 (641)
                      +.+..|....+.++.    +.++++..+. +....       .--..-|..|+..|-.+.|.-.+++|.+++.      +
T Consensus       106 ~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~-------~ll~~hl~~a~~kgll~F~letlkygg~~~~------~  172 (192)
T PF03158_consen  106 DIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPT-------SLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------I  172 (192)
T ss_pred             hhhhhhhhccchhHHHHHHHHHHhhcccccccCHH-------HHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------H
Confidence            567788888888763    2233332211 00000       0002347788899999888888888888754      7


Q ss_pred             HHHHHHHcCcHHHHHHHHh
Q psy8763         189 PVHLACSQGALDIVRLMFN  207 (641)
Q Consensus       189 ~l~~A~~~g~~~iv~~Ll~  207 (641)
                      +|..|+..++..++.+++.
T Consensus       173 vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  173 VLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHhhHHHHHHHhhc
Confidence            8888999888888888764

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=96.82  E-value=0.0017  Score=35.69  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=19.8

Q ss_pred             CCcchhhHHHhcCCHHHHHHHHhcCC
Q psy8763          31 KKQAVLHLATELNKVPILLILLQYKD   56 (641)
Q Consensus        31 ~~~t~L~~A~~~g~~~~v~~ll~~g~   56 (641)
                      .|.||+|+|+..|+.++++.|+++|.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            36778888888888888888887765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.79  E-value=0.0021  Score=60.53  Aligned_cols=64  Identities=19%  Similarity=0.170  Sum_probs=54.6

Q ss_pred             HHHHHHHHHcCCCcccc------ccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHH
Q psy8763         511 WKTVLTLVRNKANILLK------DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA  584 (641)
Q Consensus       511 ~~~v~~Ll~~g~~~~~~------~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  584 (641)
                      ...|++|.+++++.|..      +....|+||+|+.++            ..+++.+||+.|+||..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg------------~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQG------------ARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcc------------hHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            56788888888776542      344579999999999            999999999999999999999999999987


Q ss_pred             hc
Q psy8763         585 RY  586 (641)
Q Consensus       585 ~~  586 (641)
                      -.
T Consensus       472 nk  473 (591)
T KOG2505|consen  472 NK  473 (591)
T ss_pred             cH
Confidence            33

>smart00248 ANK ankyrin repeats

Probab=96.73  E-value=0.0029  Score=34.72  Aligned_cols=27  Identities=44%  Similarity=0.762  Sum_probs=20.3

Q ss_pred             CChHHHHHHhCCCHHHHHHHHHcCCCC
Q psy8763         153 GNLPLHSAVHGGDFKAVELCLKSGAKI  179 (641)
Q Consensus       153 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~  179 (641)
                      |.||+++|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567777777777788888777777655

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.20  E-value=0.058  Score=44.28  Aligned_cols=137  Identities=16%  Similarity=0.056  Sum_probs=88.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcC
Q psy8763         397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD  476 (641)
Q Consensus       397 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~  476 (641)
                      .+..|++.+...+++..-+...+-   -...++.+..||+..+.++|+|+-+.          ..-.+-.+.+..|....
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn----------L~i~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN----------LHIYNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc----------cCCCCchhhhhhhhhcc
Confidence            456788888888888877654321   12345778889999999999998652          22223445667788777


Q ss_pred             ChhHHH----HHHHcCCCCCcCCC--CCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHH
Q psy8763         477 RCDVVQ----YLIDEGADLNVLDK--EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA  550 (641)
Q Consensus       477 ~~~~v~----~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~  550 (641)
                      +.++..    ++.++..+-...|.  --..-|..|+.+|-++.+-..+++|.+++.      +.|..|+..+        
T Consensus       116 DlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~yn--------  181 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYN--------  181 (192)
T ss_pred             chhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhh--------
Confidence            776522    23333211100000  001236678899999999888999888753      7888888888        


Q ss_pred             HHHHHHHHHHHHhh
Q psy8763         551 EEVAAVFLGENLIN  564 (641)
Q Consensus       551 ~~~~~~~~~~~Ll~  564 (641)
                          +.+++.+++.
T Consensus       182 ----hRkIL~yfi~  191 (192)
T PF03158_consen  182 ----HRKILDYFIR  191 (192)
T ss_pred             ----HHHHHHHhhc
Confidence                8888887764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.02  E-value=0.032  Score=47.07  Aligned_cols=47  Identities=21%  Similarity=0.222  Sum_probs=37.6

Q ss_pred             ChhHHHHHHHcC-CCCCcC---CCCCCCHHHHHHhcCCHHHHHHHHHcCCC
Q psy8763         477 RCDVVQYLIDEG-ADLNVL---DKEKRSPLLLAASRGGWKTVLTLVRNKAN  523 (641)
Q Consensus       477 ~~~~v~~Ll~~g-~~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  523 (641)
                      +..++++++++| ++||..   -+.|.|-|.-|++.++.+++.+|+++|+-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            467888888887 666653   45788888899999999999999998884

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.23  E-value=0.067  Score=37.82  Aligned_cols=48  Identities=23%  Similarity=0.187  Sum_probs=40.9

Q ss_pred             cchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy8763          33 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSE   89 (641)
Q Consensus        33 ~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~   89 (641)
                      ..-|..|+..|+.||++.+++.+. ++        ...+..|+...+-+++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~-~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK-PD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc-cH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            346899999999999999998763 22        3369999999999999999997

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.64  E-value=0.22  Score=35.16  Aligned_cols=47  Identities=15%  Similarity=0.287  Sum_probs=26.7

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy8763         188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE  246 (641)
Q Consensus       188 t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~  246 (641)
                      ..+..|+..|+.|+++.+++.+..            ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            345666666666666666643321            13456666666666666666664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03218 maturation of RBCL 1; Provisional

Probab=91.60  E-value=14  Score=41.54  Aligned_cols=84  Identities=13%  Similarity=-0.118  Sum_probs=47.2

Q ss_pred             hhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHH-cCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHH
Q psy8763         478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR-NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAV  556 (641)
Q Consensus       478 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~  556 (641)
                      ..+.+.+++.|..|+....  .+.|...+..+..+....+++ .+......+..-.+.|......-    .     ...+
T Consensus       832 l~lf~eM~~~Gi~Pd~~T~--~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~----~-----~~A~  900 (1060)
T PLN03218        832 LMVYRETISAGTLPTMEVL--SQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY----D-----PRAF  900 (1060)
T ss_pred             HHHHHHHHHCCCCCCHHHH--HHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC----h-----HHHH
Confidence            3566777788887764432  122221224455666666665 46555555555555555443111    0     1167


Q ss_pred             HHHHHHhhcCCccccc
Q psy8763         557 FLGENLINLGACINLK  572 (641)
Q Consensus       557 ~~~~~Ll~~g~~~~~~  572 (641)
                      .+.+-..+.|.-|+..
T Consensus       901 ~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        901 SLLEEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHHHHHcCCCCCcc
Confidence            7888888899877764

>PLN03218 maturation of RBCL 1; Provisional

Probab=82.75  E-value=63  Score=36.70  Aligned_cols=50  Identities=10%  Similarity=0.117  Sum_probs=25.0

Q ss_pred             HHHHHHhCCCHHH----HHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHh
Q psy8763         156 PLHSAVHGGDFKA----VELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN  207 (641)
Q Consensus       156 ~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~  207 (641)
                      .+...++.|+++-    .+.+.+.|..++...  ..+.+...++.|..+-...+++
T Consensus       513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT--YnsLI~a~~k~G~~deA~~lf~  566 (1060)
T PLN03218        513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV--FNALISACGQSGAVDRAFDVLA  566 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHH
Confidence            3444456666433    334445565554322  1244555666777665555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	641
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-29
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-24
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-16
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-16
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-16
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-15
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-15
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-15
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		6e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-11
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-13
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-13
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-10
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-13
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-12
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		9e-13
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-12
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-12
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-11
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-12
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-05
1uoh_A	226	Human Gankyrin Length = 226		6e-12
1uoh_A	226	Human Gankyrin Length = 226		6e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-12
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-11
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-11
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-11
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-11
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-10
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-10
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		9e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		7e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-08
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		4e-09
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-09
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		5e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		5e-09
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		6e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-09
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		6e-09
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		1e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		5e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		5e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		9e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		9e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		8e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		8e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		8e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		9e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		9e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		9e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		9e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		7e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		4e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		4e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		9e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		4e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		5e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		9e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 171/374 (45%), Gaps = 27/374 (7%)
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
           PLH A   G    V+  L+ GA  +     + TP+H+A   G  ++ + +  LQ   K+ 
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL--LQNKAKV- 73
Query: 216 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT--- 272
             N+      TPLHCAA     ++V+ L++  A+ N+      +PL +AA  G  +T   
Sbjct: 74  --NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 273 ---NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIY 329
                 +   +  K    LH+A +  KV +  +LL+     +    G++G T LH+A  +
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN--AAGKNGLTPLHVAVHH 189
Query: 330 DFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 389
           +  +  ++L+   G S      NGY P+H AAK    +     LQ+G   G +  E +  
Sbjct: 190 NNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG---GSANAESV-- 243
Query: 390 FAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
              +G  PLH A   G  + V L L   A  +       TP+HL   +G + +  ++   
Sbjct: 244 ---QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI-- 298
Query: 450 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
              +  V +++T     TPLH A+ +    +V++L+   AD+N   K   SPL  AA +G
Sbjct: 299 ---KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 355
Query: 510 GWKTVLTLVRNKAN 523
               V  L++N A+
Sbjct: 356 HTDIVTLLLKNGAS 369

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 169/399 (42%), Gaps = 58/399 (14%)
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
           +TPLH A+      +V+ L+  GA  NV + +  +PL +AA  G                
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG---------------- 58
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
                  TE+ K      LLQ K  ++     +  +T LH AA        ++L+++  A
Sbjct: 59  ------HTEVAK-----YLLQNKAKVN--AKAKDDQTPLHCAARIGHTNMVKLLLEN-NA 104
Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
           +   A + G+ P+H AA+    +T+   L+   S  C           +G  PLH A   
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC--------MTKKGFTPLHVAAKY 156
Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 464
           G  +  EL L+  A  +    +  TP+H+A     LDIV+L+     S      N     
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG---- 212
Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
             TPLH AA  ++ +V + L+  G   N    +  +PL LAA  G  + V  L+  +AN 
Sbjct: 213 -YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
            L + +    LHL+   G             V + + LI  G  ++       +PLH+A+
Sbjct: 272 NLGNKSGLTPLHLVAQEG------------HVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Query: 585 RYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
            YG    VK LL  +     +N     G +PLH A+++G
Sbjct: 320 HYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQG 355

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
           +AA+N +   ++  ++ G  +  S        D++G  PLH A   G  + V+L +  GA
Sbjct: 10  EAAENGNKDRVKDLIENGADVNAS--------DSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
            ++ +  D  TP+H A   G  ++V+L+ +     K   +N+ D+   TPLH AA     
Sbjct: 62  DVNAKDSDGRTPLHHAAENGHKEVVKLLIS-----KGADVNAKDSDGRTPLHHAAENGHK 116
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           +VV+ LI +GAD+N  D + R+PL LA   G
Sbjct: 117 EVVKLLISKGADVNTSDSDGRTPLDLAREHG 147

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
           +AA+N +   ++  ++ G  +  S         ++G  PLH A   G  + V+L +  GA
Sbjct: 10  EAAENGNKDRVKDLIENGADVNASD--------SDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
            ++ +  D  TP+H A   G  ++V+L+ +     K   +N+ D+   TPLH AA     
Sbjct: 62  DVNAKDSDGRTPLHHAAENGHKEVVKLLIS-----KGADVNAKDSDGRTPLHHAAENGHK 116
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
           +VV+ LI +GAD+N  D + R+PL LA   G  + V  L +
Sbjct: 117 EVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G+   V+  +++GA ++    D  TP+H A   G  ++V+L+ +     K   +N+
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-----KGADVNA 65
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
            D+   TPLH AA     +VV+ LI +GAD+N  D + R+PL  AA  G  + V  L+  
Sbjct: 66  KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 521 KANILLKDINRRNILHLLVLNG 542
            A++   D + R  L L   +G
Sbjct: 126 GADVNTSDSDGRTPLDLAREHG 147

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
           A   G  D V+ +      E    +N++D+   TPLH AA     +VV+ LI +GAD+N 
Sbjct: 11  AAENGNKDRVKDLI-----ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            D + R+PL  AA  G  + V  L+   A++  KD + R  LH    NG        +EV
Sbjct: 66  KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG-------HKEV 118
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG 601
             +     LI+ GA +N  ++   +PL LA  +G    V KLL  + G
Sbjct: 119 VKL-----LISKGADVNTSDSDGRTPLDLAREHGNEEVV-KLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
           +AA+N +   ++  ++ G  +  S        D++G  PLH A   G  + V+L +  GA
Sbjct: 10  EAAENGNKDRVKDLIENGADVNAS--------DSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
            ++ +  D  TP+H A  +G  +IV+L+ +     K   +N+ D+   TPLH AA     
Sbjct: 62  DVNAKDSDGRTPLHYAAKEGHKEIVKLLIS-----KGADVNAKDSDGRTPLHYAAKEGHK 116
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           ++V+ LI +GAD+N  D + R+PL LA   G
Sbjct: 117 EIVKLLISKGADVNTSDSDGRTPLDLAREHG 147

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 13/161 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
           +AA+N +   ++  ++ G  +  S         ++G  PLH A   G  + V+L +  GA
Sbjct: 10  EAAENGNKDRVKDLIENGADVNASD--------SDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
            ++ +  D  TP+H A  +G  +IV+L+ +     K   +N+ D+   TPLH AA     
Sbjct: 62  DVNAKDSDGRTPLHYAAKEGHKEIVKLLIS-----KGADVNAKDSDGRTPLHYAAKEGHK 116
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
           ++V+ LI +GAD+N  D + R+PL LA   G  + V  L +
Sbjct: 117 EIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 15/166 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA     D V+ LI+ GAD+N  D + R+PL  AA  G  + V  L+   A++  KD + 
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
           R  LH          KE  +E+  +     LI+ GA +N K++   +PLH AA+ G    
Sbjct: 71  RTPLHYAA-------KEGHKEIVKL-----LISKGADVNAKDSDGRTPLHYAAKEGHKEI 118
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVW 637
           VK L+S       +N SD +G TPL +A + G    V + +    W
Sbjct: 119 VKLLISK---GADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
           +AA+N +   ++  L+ G  +  S        D++G  PLH A   G  + V+L L  GA
Sbjct: 10  EAAENGNKDRVKDLLENGADVNAS--------DSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
             + +  D  TP+HLA   G  ++V+L+ +     +    N+ D+   TPLH AA     
Sbjct: 62  DPNAKDSDGKTPLHLAAENGHKEVVKLLLS-----QGADPNAKDSDGKTPLHLAAENGHK 116
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           +VV+ L+ +GAD N  D + R+PL LA   G
Sbjct: 117 EVVKLLLSQGADPNTSDSDGRTPLDLAREHG 147

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
           +AA+N +   ++  L+ G  +  S         ++G  PLH A   G  + V+L L  GA
Sbjct: 10  EAAENGNKDRVKDLLENGADVNASD--------SDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
             + +  D  TP+HLA   G  ++V+L+ +     +    N+ D+   TPLH AA     
Sbjct: 62  DPNAKDSDGKTPLHLAAENGHKEVVKLLLS-----QGADPNAKDSDGKTPLHLAAENGHK 116
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
           +VV+ L+ +GAD N  D + R+PL LA   G  + V  L +
Sbjct: 117 EVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 15/166 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA     D V+ L++ GAD+N  D + ++PL LAA  G  + V  L+   A+   KD + 
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
           +  LHL   NG        +EV  + L +     GA  N K++  ++PLHLAA  G    
Sbjct: 71  KTPLHLAAENG-------HKEVVKLLLSQ-----GADPNAKDSDGKTPLHLAAENGHKEV 118
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVW 637
           VK LLS        N SD +G TPL +A + G    V + +    W
Sbjct: 119 VKLLLSQ---GADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 5/129 (3%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           G  PLH A   G  + V+L L++GA ++ +  +  TP+HLA   G L++V+L+      E
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-----E 56
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
               +N+ D    TPLH AA     +VV+ L++ GAD+N  DK  R+PL LAA  G  + 
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 514 VLTLVRNKA 522
           V  L+   A
Sbjct: 117 VKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
           TPLH AA     +VV+ L++ GAD+N  DK  R+PL LAA  G  + V  L+   A++  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
           KD N R  LHL   NG  H+     EV  +     L+  GA +N K+ +  +PLHLAAR 
Sbjct: 64  KDKNGRTPLHLAARNG--HL-----EVVKL-----LLEAGADVNAKDKNGRTPLHLAARN 111
Query: 587 GRYNTVKKLLSS 598
           G    VK LL +
Sbjct: 112 GHLEVVKLLLEA 123

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 530 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRY 589
           N R  LHL   NG  H+     EV  +     L+  GA +N K+ +  +PLHLAAR G  
Sbjct: 1   NGRTPLHLAARNG--HL-----EVVKL-----LLEAGADVNAKDKNGRTPLHLAARNGHL 48
Query: 590 NTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
             VK LL  E G+  +N  D  G TPLH+A++ G
Sbjct: 49  EVVKLLL--EAGA-DVNAKDKNGRTPLHLAARNG 79

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
           +AA+N +   ++  L+ G     S        D++G  PLH A   G  + V+L L  GA
Sbjct: 10  EAAENGNKDRVKDLLENGADPNAS--------DSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
             + +  D  TP+H A   G  +IV+L+ +     K    N+ D+   TPLH AA     
Sbjct: 62  DPNAKDSDGRTPLHYAAENGHKEIVKLLLS-----KGADPNAKDSDGRTPLHYAAENGHK 116
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           ++V+ L+ +GAD N  D + R+PL LA   G
Sbjct: 117 EIVKLLLSKGADPNTSDSDGRTPLDLAREHG 147

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
           +AA+N +   ++  L+ G     S         ++G  PLH A   G  + V+L L  GA
Sbjct: 10  EAAENGNKDRVKDLLENGADPNASD--------SDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
             + +  D  TP+H A   G  +IV+L+ +     K    N+ D+   TPLH AA     
Sbjct: 62  DPNAKDSDGRTPLHYAAENGHKEIVKLLLS-----KGADPNAKDSDGRTPLHYAAENGHK 116
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
           ++V+ L+ +GAD N  D + R+PL LA   G  + V  L +
Sbjct: 117 EIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA     D V+ L++ GAD N  D + R+PL  AA  G  + V  L+   A+   KD + 
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
           R  LH    NG   I +             L++ GA  N K++   +PLH AA  G    
Sbjct: 71  RTPLHYAAENGHKEIVKL------------LLSKGADPNAKDSDGRTPLHYAAENGHKEI 118
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVW 637
           VK LLS        N SD +G TPL +A + G    V + +    W
Sbjct: 119 VKLLLSK---GADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           D +G  PLH A   G  + VE+ LK+GA ++ +  D  TP+HLA  +G L+IV ++    
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
                  +N+ D    TPLH AA     ++V+ L+  GAD+N  DK  ++P  LA   G
Sbjct: 92  AD-----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNG 145

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           +G  PLH A   G  + VE+ LK+GA ++ +  D  TP+HLA  +G L+IV ++      
Sbjct: 34  DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
                +N+ D    TPLH AA     ++V+ L+  GAD+N  DK  ++P  LA   G
Sbjct: 94  -----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNG 145

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  DK+  +PL LAA  G  + V  L++  A++  KD + 
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL    G   I E             L+  GA +N K+    +PLHLAAR G    
Sbjct: 69  YTPLHLAAREGHLEIVEV------------LLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           V+ LL   +    +N  D  G TP  +A   G
Sbjct: 117 VEVLL---KAGADVNAQDKFGKTPFDLAIDNG 145

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           D +G  PLH A   G  + VE+ LK+GA ++ +  D  TP+HLA  +G L+IV ++    
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
                  +N+ D    TPLH AA     ++V+ L+  GAD+N  DK  ++P  LA   G
Sbjct: 92  AD-----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREG 145

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           +G  PLH A   G  + VE+ LK+GA ++ +  D  TP+HLA  +G L+IV ++      
Sbjct: 34  DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
                +N+ D    TPLH AA     ++V+ L+  GAD+N  DK  ++P  LA   G
Sbjct: 94  -----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREG 145

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  DK+  +PL LAA  G  + V  L++  A++  KD + 
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL    G   I E             L+  GA +N K+    +PLHLAAR G    
Sbjct: 69  YTPLHLAAREGHLEIVEV------------LLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G TP  +A +EG      + Q
Sbjct: 117 VEVLL---KAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 23/226 (10%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
           PLH+A   G      + +++GA I T   D  TP+  A     L+ V+ +      +   
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-----KAGA 68
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAASRGGWKTVL 515
            ++  DA+  T LH AA     +VVQYL+  G  D+N  D    +P++ A        V 
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 516 TLVRNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN 574
            L+   ++I ++D N  NI LH    +G             V + E L+     ++  N 
Sbjct: 129 LLLSKGSDINIRD-NEENICLHWAAFSG------------CVDIAEILLAAKCDLHAVNI 175
Query: 575 SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIAS 620
             +SPLH+AAR  RY+ V   LS +    + N+   EG TPL  AS
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK---EGETPLQCAS 218

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
           K +PLH AA     D+   L+  GA+++   +++R+PL+ AA     + V  L++  A +
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 525 LLKDINRRNILHLLVLNGGGHIKEF----------------------AEEVAAVFLGENL 562
             KD      LHL    G   + ++                      A E   V L + L
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 563 INLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE 622
           ++ G+ IN+++N     LH AA  G  +  + LL+++     +N     G +PLHIA++E
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN---IHGDSPLHIAARE 187
Query: 623 GFHYSVSIF 631
             +  V +F
Sbjct: 188 NRYDCVVLF 196

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G    V + + +GA ++    D  TP+HLA S G L+IV ++      +    +N+
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
           +D   +TPLH AA     ++V+ L+  GAD+N  D +  +PL LAA  G  + V  L+++
Sbjct: 76  SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEF 549
            A++  +D   +    + + NG   + E 
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  D +  +PL LAAS G  + V  L++N A++   D+  
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL    G   I E             L+  GA +N  +N   +PLHLAA+YG    
Sbjct: 81  ITPLHLAAATGHLEIVEV------------LLKHGADVNAYDNDGHTPLHLAAKYGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 5/150 (3%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
            A   G    V + + +GA ++ +  D  TP+HLA  +G L+IV ++           +N
Sbjct: 20  EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-----VN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
           + D    TPLH AA     ++V+ L+  GAD+N  DK+  +PL LAA  G  + V  L++
Sbjct: 75  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEF 549
             A++  +D   +    + + NG   + E 
Sbjct: 135 AGADVNAQDKFGKTAFDISIDNGNEDLAEI 164

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  DK+  +PL LAA  G  + V  L++  A++  KD + 
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL    G  H++          + E L+  GA +N K+    +PLHLAAR G    
Sbjct: 81  YTPLHLAAREG--HLE----------IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 129 VEVLL---KAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G    V + + +GA ++ + F   TP+HLA   G L+IV ++      +    +N+
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
            D+  +TPLH AA     ++V+ L+  GAD+N  D    +PL LAA RG  + V  L++N
Sbjct: 76  KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            A++  +D   +    + + NG   + E  +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 77/207 (37%), Gaps = 53/207 (25%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ D    TPLH AA F   ++V+ L+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILM-----ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GAD+N  D    +PL LAA RG  + V  L++N                         
Sbjct: 68  KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN------------------------- 102
Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
                               GA +N  ++   +PLHLAA+ G    V+ LL   +    +
Sbjct: 103 --------------------GADVNASDSHGFTPLHLAAKRGHLEIVEVLL---KNGADV 139
Query: 606 NESDGEGLTPLHIASKEGFHYSVSIFQ 632
           N  D  G T   I+   G      I Q
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
           +AA+      + + +  G  +  +        D  G  PLH A + G  + VE+ LK GA
Sbjct: 20  EAARAGQDDEVRILMANGADVNAA--------DNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
            +        TP+HLA   G L+IV ++      +    +N+ D+  MTPLH AA +   
Sbjct: 72  DVDASDVFGYTPLHLAAYWGHLEIVEVLL-----KNGADVNAMDSDGMTPLHLAAKWGYL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G    V + + +GA ++      +TP+HLA   G L+IV ++           +++
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-----VDA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
           +D    TPLH AA +   ++V+ L+  GAD+N +D +  +PL LAA  G  + V  L+++
Sbjct: 76  SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            A++  +D   +    + + NG   + E  +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  D    +PL LAA  G  + V  L+++ A++   D+  
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL      GH++          + E L+  GA +N  ++   +PLHLAA++G    
Sbjct: 81  YTPLHLAAY--WGHLE----------IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 5/123 (4%)
Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
           ++  D +G+ PLH A   G  + VE+ LK GA ++ +  D  TP+HLA   G L+IV ++
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 206 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
                      +N+ DA  +TPLH AA     ++V+ L+  GAD+N  DK  ++   ++ 
Sbjct: 100 LKYGAD-----VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 266 SRG 268
             G
Sbjct: 155 DNG 157

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
           +AA+      + + +  G  +    ++        G+ PLH A   G  + VE+ LK GA
Sbjct: 20  EAARAGQDDEVRILMANGADVNAHDDQ--------GSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
            ++ +  D  TP+HLA   G L+IV ++           +N+ DA  +TPLH AA     
Sbjct: 72  DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD-----VNAQDAYGLTPLHLAADRGHL 126
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
            A   G    V + + +GA ++      STP+HLA   G  +IV ++      +    +N
Sbjct: 20  EAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLL-----KHGADVN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
           + D    TPLH AA     ++V+ L+  GAD+N  D    +PL LAA RG  + V  L++
Sbjct: 75  ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
           + A++  +D   +    + + NG   + E  +++
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  D +  +PL LAA  G  + V  L+++ A++  +D + 
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL   NG   I E             L+  GA +N ++    +PLHLAA  G    
Sbjct: 81  WTPLHLAADNGHLEIVEV------------LLKYGADVNAQDAYGLTPLHLAADRGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 150/336 (44%), Gaps = 38/336 (11%)
Query: 203 RLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
           +LM  L P    V  +++D +K TPLH AA ++R  +VQ L+  GAD++  DK    PL 
Sbjct: 39  KLMALLTPLN--VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH 96
Query: 263 LAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGG 316
            A S G ++       +G     ++  +   LH A   N+V +  +LL +     ++   
Sbjct: 97  NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC- 155
Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
            HG++A+ +A   +  E  R+  +  G SL +A         D AK   +  +E+ + F 
Sbjct: 156 -HGKSAVDMAPTPELRE--RLTYEFKGHSLLQAAREA-----DLAKVKKTLALEI-INFK 206
Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
           +     +    +L  A  +L      H    +  EL L+ GA ++ +  D  TP+H+A  
Sbjct: 207 Q----PQSHETALHCAVASL------HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256
Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
           +   D++ ++           +N+ D+   T LH AA+       + L+  G+D +++  
Sbjct: 257 RAHNDVMEVLHKHGAK-----MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311
Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRR 532
           +        A++ G + V  ++     +   D++ R
Sbjct: 312 QG-----FTAAQMGNEAVQQILSESTPMRTSDVDYR 342

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 24/241 (9%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
           PLH A      + V+L L+ GA +  +      P+H ACS G  ++  L+      +   
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-----KHGA 115
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
           C+N+ D  + TPLH AA  +R +V   L+  GAD  +++   +S + +A +    +  LT
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT-PELRERLT 174
Query: 517 LVRNKANILLK-----DINR-RNILHLLVLN---GGGHIKEFAEEVAAVF-----LGENL 562
               K + LL+     D+ + +  L L ++N      H       VA++      + E L
Sbjct: 175 -YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233
Query: 563 INLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE 622
           +  GA +N KN    +PLH+AA    +N V ++L   +    +N  D  G T LH A+  
Sbjct: 234 LRKGANVNEKNKDFMTPLHVAAERA-HNDVMEVL--HKHGAKMNALDSLGQTALHRAALA 290
Query: 623 G 623
           G
Sbjct: 291 G 291

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
            A   G    V + + +GA ++ +     TP+HLA   G L+IV ++      +    +N
Sbjct: 20  EAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-----KNGADVN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
           + D   MTPL  AA+F   ++V+ L+  GAD+N  D E  +PL LAA  G  + V  L++
Sbjct: 75  AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
           N A++  +D   +    + + NG   + E  +++
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 76/207 (36%), Gaps = 53/207 (25%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ DA   TPLH AA     ++V+ L+
Sbjct: 13  DLGKKLLEAARAGRDDEVRILM-----ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GAD+N +D    +PL LAA  G  + V  L++N                         
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN------------------------- 102
Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
                               GA +N  +    +PLHLAA +G    V+ LL   +    +
Sbjct: 103 --------------------GADVNANDMEGHTPLHLAAMFGHLEIVEVLL---KNGADV 139
Query: 606 NESDGEGLTPLHIASKEGFHYSVSIFQ 632
           N  D  G T   I+   G      I Q
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           D  G+ PLH A   G  + VE+ LK+GA ++   F  STP+HLA  +G L+IV ++    
Sbjct: 44  DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYG 103
Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
                  +N+ D    TPLH AA     ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 104 AD-----VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           G+ PLH A   G  + VE+ LK+GA ++   F  STP+HLA  +G L+IV ++       
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD- 105
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
               +N+ D    TPLH AA     ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 106 ----VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ D    TPLH AA     ++V+ L+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILM-----ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 537
             GAD+N LD    +PL LAA RG  + V  L++  A++   D      LHL
Sbjct: 68  KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHL 119

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  D    +PL LAA  G  + V  L++N A++   D + 
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL    G   I E             L+  GA +N  +    +PLHLAA  G    
Sbjct: 81  STPLHLAAKRGHLEIVEV------------LLKYGADVNADDTIGSTPLHLAADTGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 129 VEVLL---KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 208
           +D  G  PLH A   G  + VE+ L++GA ++    + +TP+HLA S G L+IV ++   
Sbjct: 31  YDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKY 90
Query: 209 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
                   +N+ DA  +TPL+ AA +   ++V+ L+  GAD+N  DK
Sbjct: 91  GAD-----VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           G  PLH A   G  + VE+ L++GA ++    + +TP+HLA S G L+IV ++       
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD- 93
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
               +N+ DA  +TPL+ AA +   ++V+ L+  GAD+N  DK
Sbjct: 94  ----VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD N  D   R+PL +AA+ G  + V  L+RN A++   D N 
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL            A  +  + + E L+  GA +N K+ +  +PL+LAA +G    
Sbjct: 69  TTPLHL------------AASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEI 116
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 117 VEVLL---KHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 101/242 (41%), Gaps = 30/242 (12%)
Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
           S GC    M+   A  G L         + K   L  KS A  + Q  D  T +H ACS 
Sbjct: 2   SEGCVSNLMVCNLAYSGKLE--------ELKESILADKSLATRTDQ--DSRTALHWACSA 51
Query: 438 GALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKE 497
           G  +IV  +  L      V +N  D    +PLH AA   R ++V+ L+ +GA +N +++ 
Sbjct: 52  GHTEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN 106
Query: 498 KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVF 557
             +PL  AAS+   +  + L+   AN   KD      +H     G   +           
Sbjct: 107 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI-------- 158
Query: 558 LGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLH 617
               L+   A  N+++    +PLHLA    R    K L+S     +I N+   E  TPL 
Sbjct: 159 ----LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK---EEKTPLQ 211
Query: 618 IA 619
           +A
Sbjct: 212 VA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 516 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
           +++ +K+     D + R  LH     G   I EF            L+ LG  +N K+++
Sbjct: 26  SILADKSLATRTDQDSRTALHWACSAGHTEIVEF------------LLQLGVPVNDKDDA 73
Query: 576 NESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
             SPLH+AA  GR   VK LL   +G+ + N  +  G TPLH A+ +  H
Sbjct: 74  GWSPLHIAASAGRDEIVKALLG--KGAQV-NAVNQNGCTPLHYAASKNRH 120

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
           GC    M+   A  G L         + K   L  KS A  + Q  D  T +H ACS G 
Sbjct: 3   GCVSNLMVCNLAYSGKLE--------ELKESILADKSLATRTDQ--DSRTALHWACSAGH 52
Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
            +IV  +  L      V +N  D    +PLH AA   R ++V+ L+ +GA +N +++   
Sbjct: 53  TEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC 107
Query: 500 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 559
           +PL  AAS+   +  + L+   AN   KD      +H     G   +             
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI---------- 157
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
             L+   A  N+++    +PLHLA    R    K L+S     +I N+   E  TPL +A
Sbjct: 158 --LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK---EEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 516 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
           +++ +K+     D + R  LH     G   I EF            L+ LG  +N K+++
Sbjct: 25  SILADKSLATRTDQDSRTALHWACSAGHTEIVEF------------LLQLGVPVNDKDDA 72
Query: 576 NESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
             SPLH+AA  GR   VK LL   +G+ + N  +  G TPLH A+ +  H
Sbjct: 73  GWSPLHIAASAGRDEIVKALLG--KGAQV-NAVNQNGCTPLHYAASKNRH 119

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
           +AA+      + + +  G  +  +        DA G  PLH A   G  + VE+ LK GA
Sbjct: 20  EAARAGQDDEVRILMANGADVNAT--------DASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
            ++      STP+HLA   G L+IV ++           +N+ D    TPLH AA+    
Sbjct: 72  DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 359 DAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
           +AA+      + + +  G  +  +         A G  PLH A   G  + VE+ LK GA
Sbjct: 20  EAARAGQDDEVRILMANGADVNATD--------ASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 419 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 478
            ++      STP+HLA   G L+IV ++           +N+ D    TPLH AA+    
Sbjct: 72  DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHL 126
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G    V + + +GA ++       TP+HLA + G L+IV ++           +N+
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-----VNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
            D    TPLH AA+    ++V+ L+  GAD+N +D    +PL LAA  G  + V  L+++
Sbjct: 76  IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            A++  +D   +    + + NG   + E  +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  D    +PL LAA+ G  + V  L+++ A++   DI  
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL  L G   I E             L+  GA +N  +   ++PLHLAA  G    
Sbjct: 81  STPLHLAALIGHLEIVEV------------LLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
           +AA+      + + +  G  +  +        DA G  PLH A   G  + VE+ LK GA
Sbjct: 20  EAARAGQDDEVRILMANGADVNAT--------DASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
            ++      STP+HLA   G L+IV ++           +N+ D    TPLH AA+    
Sbjct: 72  DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD-----VNAVDTWGDTPLHLAAIMGHL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G    V + + +GA ++       TP+HLA + G L+IV ++           +N+
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-----VNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
            D    TPLH AA+    ++V+ L+  GAD+N +D    +PL LAA  G  + V  L+++
Sbjct: 76  IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            A++  +D   +    + + NG   + E  +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  D    +PL LAA+ G  + V  L+++ A++   DI  
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL  L G   I E             L+  GA +N  +   ++PLHLAA  G    
Sbjct: 81  STPLHLAALIGHLEIVEV------------LLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 129 VEVLL---KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
            A   G    V + + +GA ++ +     TP+HLA  +G L+IV ++           +N
Sbjct: 20  EAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-----VN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
           + D    TPLH AA++   ++V+ L+  GAD+N  D    +PL LAA  G  + V  L++
Sbjct: 75  AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
             A++  +D   +    + + NG   + E  +++
Sbjct: 135 YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  D   ++PL LAA +G  + V  L+++ A++   D   
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL  L G  H+     E+  V L       GA +N  +    +PLHLAA  G    
Sbjct: 81  DTPLHLAALYG--HL-----EIVEVLLKN-----GADVNATDTYGFTPLHLAADAGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 129 VEVLL---KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           L +A  G D + V + + +GA ++    +  TP+HLA + G L+IV ++      +    
Sbjct: 11  LEAAAAGQDDE-VRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-----KNGAD 64
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
           +N++D+  +TPLH AA     ++V+ L+  GAD+N  D+   +PL LAA  G  + V  L
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 518 VRNKANILLKD 528
           +++ A++  +D
Sbjct: 125 LKHGADVNAQD 135

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  D    +PL LAA+ G  + V  L++N A++   D   
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL   +G   I E             L+  GA +N  + +  +PLHLAA  G+   
Sbjct: 73  ITPLHLAAYDGHLEIVEV------------LLKHGADVNAYDRAGWTPLHLAALSGQLEI 120
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  GLT   I+  +G      I Q
Sbjct: 121 VEVLL---KHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
           +AA+      + + +  G  +  +        D  G  PLH A + G  + VE+ LK+GA
Sbjct: 20  EAARAGRDDEVRILMANGADVNAA--------DVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
            ++      STP+HLA   G L+IV ++      +    +N+ D   +TPLH AA     
Sbjct: 72  DVNAYDTLGSTPLHLAAHFGHLEIVEVLL-----KNGADVNAKDDNGITPLHLAANRGHL 126
Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           ++V+ L+  GAD+N  DK  ++   ++ + G
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISINNG 157

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G    V + + +GA ++       TP+HLA   G L+IV ++      +    +N+
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
            D    TPLH AA F   ++V+ L+  GAD+N  D    +PL LAA+RG  + V  L++ 
Sbjct: 76  YDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            A++  +D   +    + + NG   + E  +++
Sbjct: 136 GADVNAQDKFGKTAFDISINNGNEDLAEILQKL 168

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           L  A   G    V + + +GA ++   +   TP+HL  + G L+I+ ++           
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
           +N++D    TPLH AA     ++V+ L+  GAD+N +D +  +PL LAA  G  + V  L
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
           ++  A++  +D   +    + + NG   + E  +++
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 74/207 (35%), Gaps = 53/207 (25%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ D   +TPLH        ++++ L+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILM-----ANGADVNANDWFGITPLHLVVNNGHLEIIEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
              AD+N  DK   +PL LAA RG                          HL ++     
Sbjct: 68  KYAADVNASDKSGWTPLHLAAYRG--------------------------HLEIV----- 96
Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
                         E L+  GA +N  +    +PLHLAA  G    V+ LL   +    +
Sbjct: 97  --------------EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL---KYGADV 139
Query: 606 NESDGEGLTPLHIASKEGFHYSVSIFQ 632
           N  D  G T   I+   G      I Q
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 100/240 (41%), Gaps = 30/240 (12%)
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
           GC    MI   A  G L         + K   L  KS A  + Q  D  T +H ACS G 
Sbjct: 3   GCVSNIMICNLAYSGKLD--------ELKERILADKSLATRTDQ--DSRTALHWACSAGH 52
Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
            +IV  +  L      V +N  D    +PLH AA   R ++V+ L+ +GA +N +++   
Sbjct: 53  TEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGC 107
Query: 500 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 559
           +PL  AAS+   +  + L+   AN   KD      +H     G   +             
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI---------- 157
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
             L+   A  N+++    +PLHLA    R    K L++     +I N+   E  TPL +A
Sbjct: 158 --LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK---EEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 528 DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYG 587
           D + R  LH     G   I EF            L+ LG  +N K+++  SPLH+AA  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEF------------LLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 588 RYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
           R   VK LL   +G+ + N  +  G TPLH A+ +  H
Sbjct: 85  RDEIVKALLV--KGAHV-NAVNQNGCTPLHYAASKNRH 119

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G    V + + +GA ++       TP+HLA   G L+IV ++           +++
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-----VDA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
            D    TPLH AAM    ++V+ L+  GAD+N  D    +PL LAA  G  + V  L++ 
Sbjct: 76  ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 521 KANILLKDINRRNILHLLVLNG 542
            A++  +D   +    + + NG
Sbjct: 136 GADVNAQDKFGKTAFDISIDNG 157

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ LI  GAD+N +D    +PL LAA  G  + V  L+++ A++   D+  
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL  +   GH++          + E L+  GA +N  + +  +PLHLAA  G    
Sbjct: 81  FTPLHLAAMT--GHLE----------IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           V+ LL   +    +N  D  G T   I+   G
Sbjct: 129 VEVLL---KYGADVNAQDKFGKTAFDISIDNG 157

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 30/240 (12%)
Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
           GC    MI   A  G L         + K   L  KS A  + Q  D  T +H ACS G 
Sbjct: 3   GCVSNIMICNLAYSGKLD--------ELKERILADKSLATRTDQ--DSRTALHWACSAGH 52
Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
            +IV  +  L      V +N  D    +PLH AA     ++V+ L+ +GA +N +++   
Sbjct: 53  TEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC 107
Query: 500 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLG 559
           +PL  AAS+   +  + L+   AN   KD      +H     G   +             
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI---------- 157
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
             L+   A  N+++    +PLHLA    R    K L++     +I N+   E  TPL +A
Sbjct: 158 --LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK---EEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
           TD    T LH A      ++V++L+  G  +N  D    SPL +AAS G  + V  L+  
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
            A++   + N    LH           +   E+A +     L+  GA  + K++ + + +
Sbjct: 96  GAHVNAVNQNGCTPLHYAA-------SKNRHEIAVM-----LLEGGANPDAKDHYDATAM 143
Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE 622
           H AA  G    V  LL  +  + I    D EG TPLH+A  E
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNI---QDTEGNTPLHLACDE 182

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 528 DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYG 587
           D + R  LH     G   I EF            L+ LG  +N K+++  SPLH+AA  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEF------------LLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 588 RYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
               VK LL   +G+ + N  +  G TPLH A+ +  H
Sbjct: 85  XDEIVKALLV--KGAHV-NAVNQNGCTPLHYAASKNRH 119

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 5/156 (3%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           L  A   G    V + + +GA ++   +   TP+HLA   G L+IV ++           
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
           +N+ D    TPLH AA     ++V+ L+  GAD+N  D E  +PL LAA  G  + V  L
Sbjct: 73  VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
           ++  A++  +D   +    + + NG   + E  +++
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
           AA   + D V+ L+  GAD+N  D    +PL LAA  G  + V  L++  A++   D   
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
              LHL   NG   I E             L+  GA +N K+    +PLHLAA  G    
Sbjct: 81  ATPLHLAADNGHLEIVEV------------LLKHGADVNAKDYEGFTPLHLAAYDGHLEI 128
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           V+ LL   +    +N  D  G T   I+   G      I Q
Sbjct: 129 VEVLL---KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G    V + + +GA ++       TP+HLA   G L+IV ++      +    +N+
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
            D+  +TPLH AA     +VV+ L+  GAD+N  D    +PL LAA+ G  + V  L+++
Sbjct: 76  DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            A++  +D   +    + + NG   + E  +++
Sbjct: 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 110/265 (41%), Gaps = 44/265 (16%)
Query: 185 DLSTPVHLACSQGALDIVRLMFNL--QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQY 242
           D  TP+H+A  QG L  V  + NL  Q   +L   N+    + TPLH A +     VV+ 
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL---RQTPLHLAVITTLPSVVRL 64
Query: 243 LIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLI 302
           L+  GA    LD+                             Q   HLA E      L  
Sbjct: 65  LVTAGASPMALDRHG---------------------------QTAAHLACEHRSPTCLRA 97
Query: 303 LLQY--KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRA-CSNGYYPIHD 359
           LL       +D+      G TALH+A   +  E  ++L+ + GA +      +G  P+  
Sbjct: 98  LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL-ERGADIDAVDIKSGRSPLIH 156
Query: 360 AAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK 419
           A +N S   +++ LQ G ++     +M S     G+  LHSA   G    V   ++SGA 
Sbjct: 157 AVENNSLSMVQLLLQHGANVNA---QMYS-----GSSALHSASGRGLLPLVRTLVRSGAD 208
Query: 420 ISTQQFDLSTPVHLACSQGALDIVR 444
            S +     TP+ +A S+  +DI+R
Sbjct: 209 SSLKNCHNDTPLMVARSRRVIDILR 233

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 112/285 (39%), Gaps = 70/285 (24%)
Query: 254 DKEKRSPLLLAASRGG----------WKTNGVNTRILNNKKQAVLHLA--TELNKVPILL 301
           D++  +PL +A  +G           ++  G    I NN +Q  LHLA  T L  V  LL
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 302 ILLQYKDM-IDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS---LKRACSNGYYPI 357
           +      M +D      HG+TA H+A  +    C R L+         L+    +G   +
Sbjct: 66  VTAGASPMALD-----RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 358 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG 417
           H A      +T+++ L+ G  I        ++    G  PL  AV       V+L L+ G
Sbjct: 121 HVAVNTECQETVQLLLERGADID-------AVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173
Query: 418 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 477
           A ++ Q +  S+ +H A  +G L +VR                                 
Sbjct: 174 ANVNAQMYSGSSALHSASGRGLLPLVR--------------------------------- 200
Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA 522
                 L+  GAD ++ +    +PL++A SR     V+ ++R KA
Sbjct: 201 -----TLVRSGADSSLKNCHNDTPLMVARSR----RVIDILRGKA 236

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 26/241 (10%)
Query: 348 RACSNGYYPIHDAAKN----ASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVH 403
           RA  +G  P+H A       A  + + +F Q G      RE  + ++      PLH AV 
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGG------RE--LDIYNNLRQTPLHLAVI 55
Query: 404 GGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 463
                 V L + +GA          T  HLAC   +   +R + +   +   + L + + 
Sbjct: 56  TTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD-SAAPGTLDLEARNY 114
Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLAASRGGWKTVLTLVRNKA 522
             +T LH A   +  + VQ L++ GAD++ +D K  RSPL+ A        V  L+++ A
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 523 NILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHL 582
           N+  +  +  + LH             A     + L   L+  GA  +LKN  N++PL +
Sbjct: 175 NVNAQMYSGSSALH------------SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Query: 583 A 583
           A
Sbjct: 223 A 223

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 128/291 (43%), Gaps = 41/291 (14%)
Query: 344 ASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVH 403
           +S +RA     + +  A +N     ++  L+ G ++    EE        G  PLH+AV 
Sbjct: 16  SSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-------GWTPLHNAVQ 68
Query: 404 GGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 463
                 VEL L+ GA    ++ + +TP  LA   G++ +++L  +     K   +N  D 
Sbjct: 69  MSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLS-----KGADVNECDF 123
Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
              T    AA++ +   +++L   GA++N+  K K     L   R G  T L     K +
Sbjct: 124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL---RKGGATALMDAAEKGH 180
Query: 524 I-LLK--------DIN------RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC 568
           + +LK        D+N      R  ++H L+ +    ++      A   L   L++ GA 
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE------AITHL---LLDHGAD 231
Query: 569 INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
           +N++    ++PL LA        V++LL  E     IN++D +G T L +A
Sbjct: 232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLA 280

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
           TP+HLA   G L++V+L+      E    +N+ D    TPLH AA     +VV+ L++ G
Sbjct: 4   TPLHLAARNGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA 522
           AD+N  DK  R+PL LAA  G  + V  L+   A
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 48/89 (53%)
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
           TPLH AA     +VV+ L++ GAD+N  DK  R+PL LAA  G  + V  L+   A++  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAA 555
           KD N R  LHL   NG   + +   E  A
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 499 RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFL 558
           R+PL LAA  G  + V  L+   A++  KD N R  LHL   NG  H+     EV  +  
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HL-----EVVKL-- 53
Query: 559 GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
              L+  GA +N K+ +  +PLHLAAR G    VK LL +
Sbjct: 54  ---LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 159 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
           +A   GD + V   L+ GA I+    D  T +H AC    +D+V+ +      E    +N
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-----ENGANIN 100
Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTR 278
             D +   PLH AA     D+ +YLI +GA +  ++ E  +PL +A      +      +
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE----EAMEELLQ 156
Query: 279 ILNNKKQAVLHLATELNKVPILLILLQY--KDMIDILQGGEHGRTALHIAAIYDFDECAR 336
              N++   +  A +  +  +L    Q+     I+ ++  + G TALH+AA   + E  +
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 337 ILVK-DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
           +L++  +  ++K    +G+ P+H AA     +   + ++
Sbjct: 217 LLIQARYDVNIKD--YDGWTPLHAAAHWGKEEACRILVE 253

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 22/215 (10%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
           +A   GD + V   L+ GA I+    D  T +H AC    +D+V+ +      E    +N
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-----ENGANIN 100
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA------------AS 507
             D +   PLH AA     D+ +YLI +GA +  ++ E  +PL +A             +
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 508 RGGWKTVLTLVRNKANILLKD----INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLI 563
           R G   +    + +  I+L+D    +N  +I  +     GG     A       + + LI
Sbjct: 161 RQG-VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 564 NLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
                +N+K+    +PLH AA +G+    + L+ +
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 82/199 (41%), Gaps = 29/199 (14%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           N TD    T LH AA + R D  + L++  AD N+ D   R+PL  A S         L+
Sbjct: 51  NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV--------AAVFLGEN--------- 561
           RN+A  L  D    +    L+L     ++   E++        A   LG++         
Sbjct: 111 RNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 168
Query: 562 -------LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
                  L+  GA  +++NN  E+PL LAAR G Y T K LL       I +  D     
Sbjct: 169 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD---RL 225
Query: 615 PLHIASKEGFHYSVSIFQV 633
           P  IA +   H  V +  +
Sbjct: 226 PRDIAQERMHHDIVRLLDL 244

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 25/167 (14%)
Query: 114 YPIHDA-AKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
           YP+H A  +N   K  E+          S+  ++   D +G +PLH +V    F+A E+ 
Sbjct: 4   YPLHQACMENEFFKVQELL--------HSKPSLLLQKDQDGRIPLHWSV---SFQAHEIT 52
Query: 173 LKSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQK 224
               +K+     D        TP H+ACS G L++V+ +++  L+P      LN    Q 
Sbjct: 53  SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQG 107
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
           +T LH A      +V Q+LI+ GA + + DK  + PL  AAS G  K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCL 414
           YP+H A        ++  L    S+   +++       +G +PLH +V    F+A E+  
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-------DGRIPLHWSV---SFQAHEITS 53
Query: 415 KSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQKM 466
              +K+     D        TP H+ACS G L++V+ +++  L+P      LN    Q +
Sbjct: 54  FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQGV 108
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
           T LH A      +V Q+LI+ GA + + DK  + PL  AAS G  K +
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           N PLH A    +F  V+  L S   +  Q+  D   P+H + S  A +I   +  L   E
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL--LSKME 60
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE--GADLNVLDKEKRSPLLLAASRGGW 511
            +   +  D    TP H A      +VV+ L D     DLN +  +  + L LA  +  +
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 512 KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG-ACIN 570
           +    L+ N A++ +KD   +  LH             A  V ++ L E L  LG + +N
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHR------------AASVGSLKLIELLCGLGKSAVN 168
Query: 571 LKNNSNESPLHLAARYGR 588
            ++    +PL  A   G 
Sbjct: 169 WQDKQGWTPLFHALAEGH 186

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
           +GN PLH+A   G  + V+  L  GA ++ +  D +TP+HLA   G  +IV+L+      
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL----- 62
Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
            K   +N+      TP H A      ++V+ L  +GAD+N 
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           +GN PLH+A   G  + V+  L  GA ++ +  D +TP+HLA   G  +IV+L+      
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL----- 62
Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
            K   +N+      TP H A      ++V+ L  +GAD+N 
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 535 LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKK 594
           LH    NG       AEEV      + L++ GA +N ++    +PLHLAA+ G    VK 
Sbjct: 13  LHNAAKNG------HAEEV------KKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 595 LLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQV 633
           LL+       +N    +G TP H+A K G H  V +   
Sbjct: 61  LLAK---GADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 25/167 (14%)
Query: 114 YPIHDA-AKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
           YP+H A  +N   K  E+          S+  ++   D +G +PLH +V    F+A E+ 
Sbjct: 4   YPLHQACMENEFFKVQELL--------HSKPSLLLQKDQDGRIPLHWSV---SFQAHEIT 52
Query: 173 LKSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQK 224
               +K+     D        TP H+ACS G L++V+ +++  L+P      LN    Q 
Sbjct: 53  SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQG 107
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
           +T LH A      +V Q+LI+ GA + + DK  + PL  AAS G  K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCL 414
           YP+H A        ++  L    S+   +++       +G +PLH +V    F+A E+  
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-------DGRIPLHWSV---SFQAHEITS 53
Query: 415 KSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQKM 466
              +K+     D        TP H+ACS G L++V+ +++  L+P      LN    Q +
Sbjct: 54  FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQGV 108
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
           T LH A      +V Q+LI+ GA + + DK  + PL  AAS G  K +
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           N PLH A    +F  V+  L S   +  Q+  D   P+H + S  A +I   +  L   E
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL--LSKME 60
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE--GADLNVLDKEKRSPLLLAASRGGW 511
            +   +  D    TP H A      +VV+ L D     DLN +  +  + L LA  +  +
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 512 KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG-ACIN 570
           +    L+ N A++ +KD   +  LH             A  V ++ L E L  LG + +N
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHR------------AASVGSLKLIELLCGLGKSAVN 168
Query: 571 LKNNSNESPLHLAARYGR 588
            ++    +PL  A   G 
Sbjct: 169 WQDKQGWTPLFHALAEGH 186

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 25/167 (14%)
Query: 114 YPIHDA-AKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
           YP+H A  +N   K  E+          S+  ++   D +G +PLH +V    F+A E+ 
Sbjct: 4   YPLHQACMENEFFKVQELL--------HSKPSLLLQKDQDGRIPLHWSV---SFQAHEIT 52
Query: 173 LKSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQK 224
               +K+     D        TP H+ACS G L++V+ +++  L+P      LN    Q 
Sbjct: 53  SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQG 107
Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
           +T LH A      +V Q+LI+ GA + + DK  + PL  AAS G  K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCL 414
           YP+H A        ++  L    S+   +++       +G +PLH +V    F+A E+  
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-------DGRIPLHWSV---SFQAHEITS 53
Query: 415 KSGAKISTQQFDLS------TPVHLACSQGALDIVRLMFN--LQPSEKLVCLNSTDAQKM 466
              +K+     D        TP H+ACS G L++V+ +++  L+P      LN    Q +
Sbjct: 54  FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-----LNKITNQGV 108
Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
           T LH A      +V Q+LI+ GA + + DK  + PL  AAS G  K +
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 18/198 (9%)
Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           N PLH A    +F  V+  L S   +  Q+  D   P+H + S  A +I   +  L   E
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL--LSKME 60
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE--GADLNVLDKEKRSPLLLAASRGGW 511
            +   +  D    TP H A      +VV+ L D     DLN +  +  + L LA  +  +
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 512 KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG-ACIN 570
           +    L+ N A++ +KD   +  LH             A  V ++ L E L  LG + +N
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHR------------AASVGSLKLIELLCGLGKSAVN 168
Query: 571 LKNNSNESPLHLAARYGR 588
            ++    +PL  A   G 
Sbjct: 169 WQDKQGWTPLFHALAEGH 186

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 82/199 (41%), Gaps = 29/199 (14%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           N TD    T LH AA + R D  + L++  AD N+ D   R+PL  A S         L+
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV--------AAVFLGEN--------- 561
           RN+A  L  D    +    L+L     ++   E++        A   LG++         
Sbjct: 111 RNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 168
Query: 562 -------LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
                  L+  GA  +++NN  E+PL LAAR G Y T K LL       I +  D     
Sbjct: 169 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD---RL 225
Query: 615 PLHIASKEGFHYSVSIFQV 633
           P  IA +   H  V +  +
Sbjct: 226 PRDIAQERMHHDIVRLLDL 244

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           N TD    T LH AA + R D  + L++  AD N+ D   R+PL  A S         L+
Sbjct: 52  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV--------AAVFLGEN--------- 561
           RN+A  L  D    +    L+L     ++   E++        A   LG++         
Sbjct: 112 RNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 169
Query: 562 -------LINLGACINLKNNSNESPLHLAARYGRYNTVKKLL 596
                  L+  GA  +++NN  E+PL LAAR G Y T K LL
Sbjct: 170 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 211

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 20/191 (10%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDL-STPVHLACSQGALDIVRLMFNLQPSEKLV 456
           LH A        V+  +  GA +     DL STP+H A  QG L +V  +        L+
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW--KTV 514
                D +  + +H AA F    +V YLI +G D++++D+   +PL+ AA R      T 
Sbjct: 106 -----DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN 574
           L L  N +  L    ++   LH  VL G   +               L+  GA ++ +N 
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL------------LLEAGANVDAQNI 208
Query: 575 SNESPLHLAAR 585
             ES L LA +
Sbjct: 209 KGESALDLAKQ 219

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           N TD    T LH AA + R D  + L++  AD N+ D   R+PL  A S         L+
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV--------AAVFLGEN--------- 561
           RN+A  L  D    +    L+L     ++   E++        A   LG++         
Sbjct: 79  RNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 136
Query: 562 -------LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
                  L+  GA  +++NN  E+PL LAAR G Y T K LL       I +  D     
Sbjct: 137 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD---RL 193
Query: 615 PLHIASKEGFHYSV 628
           P  IA +E  H+ +
Sbjct: 194 PRDIA-QERMHHDI 206

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 41/275 (14%)
Query: 360 AAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK 419
           A +N     ++  L+ G ++    EE        G  PLH+AV       VEL L+ GA 
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEG-------GWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 420 ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD 479
              ++ + +TP  LA   G++ +++L  +     K   +N  D    T    AA++ +  
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLS-----KGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 480 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI-LLK--------DIN 530
            +++L   GA++N+  K K     L   R G  T L     K ++ +LK        D+N
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERL---RKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 531 ------RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
                 R  ++H L+ +    ++      A   L   L++ GA +N++    ++PL LA 
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVE------AITHL---LLDHGADVNVRGERGKTPLILAV 227
Query: 585 RYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
                  V++LL  E     IN++D +G T L +A
Sbjct: 228 EKKHLGLVQRLLEQEH--IEINDTDSDGKTALLLA 260

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 354 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELC 413
           + P+H+AA +    ++   +  G ++     + +S        PLH A  GG    V++ 
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--------PLHEACLGGHLSCVKIL 111
Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF----NLQPSEKLVCLNSTDAQKMTPL 469
           LK GA+++    D  TP+  AC  G+ D V L+     ++QP   L           +P+
Sbjct: 112 LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA----------SPI 161
Query: 470 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 529
           H AA     + V  LI  G +++       +PL LA        V  L+ + A++  +  
Sbjct: 162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGK 220
Query: 530 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHL 582
            + + LH +V       +  +EE+A +     L++ GA    KN   + P+ L
Sbjct: 221 GQDSPLHAVV-------RTASEELACL-----LMDFGADTQAKNAEGKRPVEL 261

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
           S  +H   +QG LD  +L  +L+  + LV  N  D +  TPL  A+ F   + V++L++ 
Sbjct: 3   SLSIHQLAAQGELD--QLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
           GAD ++L KE+ S L LA++ G    V  L+    +I + D N      LL    G H+K
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGT--PLLYAVHGNHVK 116
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
                       E L+  GA +  + +S  +P+ LA   G Y  V++++ +
Sbjct: 117 CV----------EALLARGADLTTEADSGYTPMDLAVALG-YRKVQQVIEN 156

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
           S  +H   +QG LD  +L  +L+  + LV  N  D +  TPL  A+ F   + V++L++ 
Sbjct: 3   SLSIHQLAAQGELD--QLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
           GAD ++L KE+ S L LA++ G    V  L+    +I + D N    L   V   G H+K
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVR--GNHVK 116
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
                       E L+  GA +  + +S  +P+ LA   G Y  V++++ +
Sbjct: 117 CV----------EALLARGADLTTEADSGYTPMDLAVALG-YRKVQQVIEN 156

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 153 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 212
           G  PLH A   G F   E+ L++G     +     TP+H+A S+G  +IV ++       
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD- 92
Query: 213 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
               +N+ D  KMT LH A   +  +VV+ LI  GAD++   K
Sbjct: 93  ----VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           G  PLH A   G F   E+ L++G     +     TP+H+A S+G  +IV ++       
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD- 92
Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
               +N+ D  KMT LH A   +  +VV+ LI  GAD++   K
Sbjct: 93  ----VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 426 DLSTPVHLACSQGALDIVR-LMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
           DL   +  A   G  D VR LM N  P        +TD    +PLH AA +      + L
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF-------TTDWLGTSPLHLAAQYGHFSTTEVL 53
Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILH 536
           +  G   +   K  R+PL +AAS G    V  L+++ A++  KD+ +   LH
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 354 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELC 413
           + P+H+AA +    ++   +  G ++        ++  A+   PLH A  GG    V++ 
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAV--------NIITADHVSPLHEACLGGHLSCVKIL 55
Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF----NLQPSEKLVCLNSTDAQKMTPL 469
           LK GA+++    D  TP+  AC  G+ D V L+     ++QP   L           +P+
Sbjct: 56  LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA----------SPI 105
Query: 470 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI 529
           H AA     + V  LI  G +++       +PL LA        V  L+ + A++  +  
Sbjct: 106 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGK 164
Query: 530 NRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHL 582
            + + LH +        +  +EE+A +     L++ GA    KN   + P+ L
Sbjct: 165 GQDSPLHAVA-------RTASEELACL-----LMDFGADTQAKNAEGKRPVEL 205

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 17/164 (10%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
           +N   A  ++PLH A +      V+ L+  GA +N +  +  +PL  A   G W  V  L
Sbjct: 29  VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
           +++ A++  +             +    I E A     V    +LI  G  I+ K +   
Sbjct: 89  LQHGASVQPES------------DLASPIHEAARR-GHVECVNSLIAYGGNIDHKISHLG 135
Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
           +PL+LA    +   VKKLL S      +N+  G+  +PLH  ++
Sbjct: 136 TPLYLACENQQRACVKKLLES---GADVNQGKGQD-SPLHAVAR 175

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           N TD    T LH AA + R D  + L++  AD  + D   R+PL  A S         L+
Sbjct: 16  NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 519 RNKANIL---LKDINRRNILHL-LVLNG--GGHIKEFAEEVAAVFLGEN----------- 561
           RN+A  L   + D     IL   L L G     I   A+  A   LG++           
Sbjct: 76  RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 135
Query: 562 -----LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPL 616
                L+  GA  +++NN  E+PL LAAR G Y T K LL       I +  D     P 
Sbjct: 136 DAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDR---LPR 192
Query: 617 HIASKEGFHYSV 628
            IA +E  H+ +
Sbjct: 193 DIA-QERMHHDI 203

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
           PLH A   G    VE+ +  GA+I+       TP+HLA S G  DIV+ +   +      
Sbjct: 37  PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD---- 92
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
            +N+ +     PLH A  + +  V + L+  GA +++ +K    P+  A +      +  
Sbjct: 93  -INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA-----PLRE 146
Query: 517 LVRNKANILLKDINR 531
           L+R +A  + +++NR
Sbjct: 147 LLRERAEKMGQNLNR 161

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 435 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
           C +G    VRL  +   ++    LN  D    +PLH A    R  VV+ LI  GA +NV+
Sbjct: 8   CREGNAVAVRLWLDNTEND----LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
           ++   +PL LAAS G    V  L++ KA+I   + +    LH     G        ++VA
Sbjct: 64  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-------QDQVA 116
Query: 555 AVFLGENLINLGACINLKNNSNESPLHLA 583
                E+L+  GA +++ N   E P+  A
Sbjct: 117 -----EDLVANGALVSICNKYGEMPVDKA 140

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
           E LI  GA IN+ N  +++PLHLAA +G  + V+KLL  +     +NE    G  PLH A
Sbjct: 51  EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE---HGNVPLHYA 107

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
           PLH A   G    VE+ +  GA+I+       TP+HLA S G  DIV+ +   +      
Sbjct: 42  PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD---- 97
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
            +N+ +     PLH A  + +  V + L+  GA +++ +K    P+  A +      +  
Sbjct: 98  -INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA-----PLRE 151
Query: 517 LVRNKANILLKDINR 531
           L+R +A  + +++NR
Sbjct: 152 LLRERAEKMGQNLNR 166

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 435 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
           C +G    VRL  +   ++    LN  D    +PLH A    R  VV+ LI  GA +NV+
Sbjct: 13  CREGNAVAVRLWLDNTEND----LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
           ++   +PL LAAS G    V  L++ KA+I   + +    LH     G        ++VA
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-------QDQVA 121
Query: 555 AVFLGENLINLGACINLKNNSNESPLHLA 583
                E+L+  GA +++ N   E P+  A
Sbjct: 122 -----EDLVANGALVSICNKYGEMPVDKA 145

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
           E LI  GA IN+ N  +++PLHLAA +G  + V+KLL  +     +NE    G  PLH A
Sbjct: 56  EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE---HGNVPLHYA 112

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
           L  A   G    V + + +GA ++       TP+HLA  +G L+IV ++           
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           +N++D+   TPLH AA     ++V+ L++ GAD+N  DK  ++   ++   G
Sbjct: 73  VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           L  A   G    V + + +GA ++       TP+HLA  +G L+IV ++           
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           +N++D+   TPLH AA     ++V+ L++ GAD+N  DK  ++   ++   G
Sbjct: 73  VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ D   +TPLH AA     ++V+ L+
Sbjct: 13  DLGKKLLEATRAGQDDEVRILM-----ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GAD+N  D   R+PL LAA+ G  + V  L+   A++  +D   +    + + NG   
Sbjct: 68  KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
           + E  +++
Sbjct: 128 LAEILQKL 135

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 159 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
            A   G    V + + +GA ++      +TP+HLA     L+IV ++      +    +N
Sbjct: 20  EAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLL-----KHGADVN 74
Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           + D    TPLH AA+F   ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 75  AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
            A   G    V + + +GA ++      +TP+HLA     L+IV ++      +    +N
Sbjct: 20  EAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLL-----KHGADVN 74
Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           + D    TPLH AA+F   ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 75  AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ D +  TPLH AA +D  ++V+ L+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILM-----ANGADVNANDRKGNTPLHLAADYDHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GAD+N  D +  +PL LAA  G  + V  L+++ A++  +D   +    + + NG   
Sbjct: 68  KHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
           + E  +++
Sbjct: 128 LAEILQKL 135

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 219
           A   G    V +   +GA ++   +   TP+HLA   G L+IV ++      +    +N+
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-----KNGADVNA 75
Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           T     TPLH AA  D  ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 76  TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           A   G    V +   +GA ++   +   TP+HLA   G L+IV ++      +    +N+
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-----KNGADVNA 75
Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           T     TPLH AA  D  ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 76  TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++     +     +N+ D    TPLH AAM    ++V+ L+
Sbjct: 13  DLGKKLLEAARAGQDDEVRIL-----TANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GAD+N      R+PL LAA     + V  L+++ A++  +D   +    + + NG   
Sbjct: 68  KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
           + E  +++
Sbjct: 128 LAEILQKL 135

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
           LH A   GD  +VE  L++G+  + +     TP+H AC+ G L +V L+      +    
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-----QHKAL 68
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 254
           +N+T  Q  +PLH AA     D+V+ L+  GA  N ++
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           LH A   GD  +VE  L++G+  + +     TP+H AC+ G L +V L+      +    
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-----QHKAL 68
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
           +N+T  Q  +PLH AA     D+V+ L+  GA  N ++
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
           L  A   G    V + + +GA ++    D  TP+HLA   G L+IV ++           
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD----- 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           +N+ D   +TPLH AA+    ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 73  VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           L  A   G    V + + +GA ++    D  TP+HLA   G L+IV ++           
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           +N+ D   +TPLH AA+    ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 73  VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ D   +TPLH AA     ++V+ L+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILM-----ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GAD+N  D    +PL LAA RG  + V  L+++ A++  +D   +    + + NG   
Sbjct: 68  KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
           + E  +++
Sbjct: 128 LAEILQKL 135

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
           L  A   G    V + + +GA ++       TP+HLA  +G L+IV ++           
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           +N++D    TPLH AA     ++V+ L++ GAD+N  DK  ++   ++   G
Sbjct: 73  VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           L  A   G    V + + +GA ++       TP+HLA  +G L+IV ++           
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           +N++D    TPLH AA     ++V+ L++ GAD+N  DK  ++   ++   G
Sbjct: 73  VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ D   +TPLH AA     ++V+ L+
Sbjct: 13  DLGKKLLEATRAGQDDEVRILM-----ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GAD+N  D   R+PL LAA+ G  + V  L+   A++  +D   +    + + NG   
Sbjct: 68  KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
           + E  +++
Sbjct: 128 LAEILQKL 135

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 387 ISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 446
           +++ + +G+ PLH A   G    + L LK GA    +  D + P+HLAC QG   +V+ +
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 447 F--NLQPSEK------------------LVCL--------NSTDAQKMTPLHCAAMFDRC 478
              N +P++K                  LV L        N+++ +  T LH A +    
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
            VV+ L+  GA + VL+K +R+ +  A        +L +V
Sbjct: 199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVV 238

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 475
           SG  ++    D S+P+H+A   G  D++ L+     +       + +A +  PLH A   
Sbjct: 75  SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-----GARNADQAVPLHLACQQ 129
Query: 476 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNIL 535
               VV+ L+D  A  N  D    +PL+ A S G  + V  L+++ A+I   +      L
Sbjct: 130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Query: 536 HLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
           H  V+               VF+ E L+  GA + + N    + +  A +  +   + ++
Sbjct: 190 HEAVIEKH------------VFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQV 237
Query: 596 LSS 598
           + S
Sbjct: 238 VPS 240

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
           L  A   G    V + + +GA ++ +     TP+HLA     L+IV ++      +    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL-----KNGAD 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           +N+ DA   TPLH  AM+   ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 73  VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           L  A   G    V + + +GA ++ +     TP+HLA     L+IV ++      +    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL-----KNGAD 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           +N+ DA   TPLH  AM+   ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 73  VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ D   +TPLH AAM D  ++V+ L+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILM-----ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GAD+N +D    +PL L A  G  + V  L+++ A++  +D   +    + + NG   
Sbjct: 68  KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 546 IKEFAEEV 553
           + E  +++
Sbjct: 128 LAEILQKL 135

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
           A   G ++ V+ +  +Q     V     + ++ TPLH AA ++R  VV+YL+  GAD++ 
Sbjct: 15  AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            DK    PL  A S G ++    LV++ A + + D+ +   LH     G   I +     
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL---- 126
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHL 582
                   L+  GA    KN    +PL L
Sbjct: 127 --------LLQHGADPTKKNRDGNTPLDL 147

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
           L  A   G    V + + +GA ++ +     TP++LA + G L+IV ++      +    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-----KNGAD 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           +N+ DA   TPLH AA     ++ + L+  GAD+N  DK  ++   ++   G
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           L  A   G    V + + +GA ++ +     TP++LA + G L+IV ++      +    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-----KNGAD 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           +N+ DA   TPLH AA     ++ + L+  GAD+N  DK  ++   ++   G
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           DL   +  A   G  D VR++           +N+ D   +TPL+ A      ++V+ L+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILM-----ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL 67
Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GAD+N +D    +PL LAA  G  +    L+++ A++  +D   +    + + NG   
Sbjct: 68  KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNED 127
Query: 546 IKEFAEEV 553
           + E  +++
Sbjct: 128 LAEILQKL 135

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
           A   G ++ V+ +  +Q     V     + ++ TPLH AA ++R  VV+YL+  GAD++ 
Sbjct: 17  AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            DK    PL  A S G ++    LV++ A + + D+ +   LH     G   I +     
Sbjct: 73  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL---- 128
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHL 582
                   L+  GA    KN    +PL L
Sbjct: 129 --------LLQHGADPTKKNRDGNTPLDL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
           A   G ++ V+ +  +Q     V     + ++ TPLH AA ++R  VV+YL+  GAD++ 
Sbjct: 19  AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            DK    PL  A S G ++    LV++ A + + D+ +   LH     G   I +     
Sbjct: 75  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL---- 130
Query: 554 AAVFLGENLINLGACINLKNNSNESPLHL 582
                   L+  GA    KN    +PL L
Sbjct: 131 --------LLQHGADPTKKNRDGNTPLDL 151

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 216
           L  A   G    V + + +GA ++       TP+HLA  +G L+IV ++           
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           +N+ D    TPLH AA     ++V+ L++ GAD+N  DK  ++   ++   G
Sbjct: 73  VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           L  A   G    V + + +GA ++       TP+HLA  +G L+IV ++           
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD----- 72
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           +N+ D    TPLH AA     ++V+ L++ GAD+N  DK  ++   ++   G
Sbjct: 73  VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
           +N+ D   +TPLH AA     ++V+ L+  GAD+N  D   R+PL LAA+ G  + V  L
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
           +   A++  +D   +    + + NG   + E  +++
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 214 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTN 273
           L  LN  +  + TPLH A + ++ ++ + L+  G D  + D    +PL LA  +G   + 
Sbjct: 32  LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV 91
Query: 274 GVNT------------RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRT 321
           GV T            +  N      LHLA+    + I+ +L+     ++  Q   +GRT
Sbjct: 92  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRT 150
Query: 322 ALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
           ALH+A      +   +L+K  GA + R    GY P        S++  +   Q 
Sbjct: 151 ALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 203

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL- 455
           PLH AV     +  E  L +G     + F  +TP+HLAC QG L  V ++     +  L 
Sbjct: 45  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK-EKRSPLLLAASRGGWKTV 514
             L +T+    T LH A++     +V+ L+  GAD+N  +    R+ L LA        V
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 515 LTLVRNKANILLKDINR 531
             L++  A     D+NR
Sbjct: 165 SLLLKCGA-----DVNR 176

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
           GRTAL +  + + +   R+L++     LK     G+  IHDAA+     T++  L+F   
Sbjct: 38  GRTALQVMKLGNPEIARRLLLRGANPDLKD--RTGFAVIHDAARAGQLDTLQTLLEF--- 92
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
                +  +++   EGNLPLH A   G  + VE  +K + + +  +     T   LA   
Sbjct: 93  -----QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
           G  ++V LM
Sbjct: 148 GRNEVVSLM 156

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
           PLH A   G+   +  CL +   ++      ST ++ AC  G  DIV  +F  QP+   +
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT-QPN---I 131
Query: 216 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
            LN  +    T LH AA     D+VQ L+ +GA  ++ + EK+
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
           PLH A   G+   +  CL +   ++      ST ++ AC  G  DIV  +F  QP+   +
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT-QPN---I 131
Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
            LN  +    T LH AA     D+VQ L+ +GA  ++ + EK+
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKK 174

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 214 LVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTN 273
           L  LN  +  + TPLH A + ++ ++ + L+  G D  + D    +PL LA  +G   + 
Sbjct: 35  LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV 94
Query: 274 GVNT------------RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRT 321
           GV T            +  N      LHLA+    + I+ +L+     ++  Q   +GRT
Sbjct: 95  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA-QEPCNGRT 153
Query: 322 ALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
           ALH+A      +   +L+K  GA + R    GY P        S++  +   Q 
Sbjct: 154 ALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL- 455
           PLH AV     +  E  L +G     + F  +TP+HLAC QG L  V ++     +  L 
Sbjct: 48  PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK-EKRSPLLLAASRGGWKTV 514
             L +T+    T LH A++     +V+ L+  GAD+N  +    R+ L LA        V
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 515 LTLVRNKANILLKDINR 531
             L++  A     D+NR
Sbjct: 168 SLLLKCGA-----DVNR 179

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
           +E +I+  D EG  PL  A   G    VE  L++GA          + + LACS+G  DI
Sbjct: 25  QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 84
Query: 202 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
           V+++ +       V +N  D    TPL  A   +    V+ L++ GAD  +      + +
Sbjct: 85  VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 139
Query: 262 LLAASRG 268
            LA + G
Sbjct: 140 DLAVALG 146

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 442
           +E +I+    EG  PL  A   G    VE  L++GA          + + LACS+G  DI
Sbjct: 25  QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 84
Query: 443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 502
           V+++ +       V +N  D    TPL  A   +    V+ L++ GAD  +      + +
Sbjct: 85  VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 139
Query: 503 LLAASRGGWKTVLTLVRNKANILLKDINR 531
            LA +  G+++V  ++ +    LL++I  
Sbjct: 140 DLAVAL-GYRSVQQVIESHLLKLLQNIKE 167

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
           S  VH   +QG      +++     E+   +N TD +  TPL  AA   +  VV++L+  
Sbjct: 4   SLSVHQLAAQG-----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
           GAD  +L K + S L LA S+G    V  L+    ++   D N      LL    G H+K
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT--PLLYAVHGNHVK 116
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
                       + L+  GA   ++ +S  + + LA   G Y +V++++ S
Sbjct: 117 CV----------KMLLESGADPTIETDSGYNSMDLAVALG-YRSVQQVIES 156

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
           +E +I+  D EG  PL  A   G    VE  L++GA          + + LACS+G  DI
Sbjct: 41  QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 100
Query: 202 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
           V+++ +       V +N  D    TPL  A   +    V+ L++ GAD  +      + +
Sbjct: 101 VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 155
Query: 262 LLAASRG 268
            LA + G
Sbjct: 156 DLAVALG 162

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 442
           +E +I+    EG  PL  A   G    VE  L++GA          + + LACS+G  DI
Sbjct: 41  QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 100
Query: 443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 502
           V+++ +       V +N  D    TPL  A   +    V+ L++ GAD  +      + +
Sbjct: 101 VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 155
Query: 503 LLAASRGGWKTVLTLVRNKANILLKDI 529
            LA +  G+++V  ++ +    LL++I
Sbjct: 156 DLAVAL-GYRSVQQVIESHLLKLLQNI 181

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
           S  VH   +QG      +++     E+   +N TD +  TPL  AA   +  VV++L+  
Sbjct: 20  SLSVHQLAAQG-----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 74
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
           GAD  +L K + S L LA S+G    V  L+    ++   D N      LL    G H+K
Sbjct: 75  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT--PLLYAVHGNHVK 132
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
                       + L+  GA   ++ +S  + + LA   G Y +V++++ S
Sbjct: 133 CV----------KMLLESGADPTIETDSGYNSMDLAVALG-YRSVQQVIES 172

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
           +E +I+  D EG  PL  A   G    VE  L++GA          + + LACS+G  DI
Sbjct: 23  QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 82
Query: 202 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
           V+++ +       V +N  D    TPL  A   +    V+ L++ GAD  +      + +
Sbjct: 83  VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 137
Query: 262 LLAASRG 268
            LA + G
Sbjct: 138 DLAVALG 144

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 442
           +E +I+    EG  PL  A   G    VE  L++GA          + + LACS+G  DI
Sbjct: 23  QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 82
Query: 443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 502
           V+++ +       V +N  D    TPL  A   +    V+ L++ GAD  +      + +
Sbjct: 83  VKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM 137
Query: 503 LLAASRGGWKTVLTLVRNKANILLKD 528
            LA +  G+++V  ++ +    LL++
Sbjct: 138 DLAVAL-GYRSVQQVIESHLLKLLQN 162

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
           S  VH   +QG      +++     E+   +N TD +  TPL  AA   +  VV++L+  
Sbjct: 2   SLSVHQLAAQG-----EMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 56
Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
           GAD  +L K + S L LA S+G    V  L+    ++   D N      LL    G H+K
Sbjct: 57  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT--PLLYAVHGNHVK 114
Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
                       + L+  GA   ++ +S  + + LA   G Y +V++++ S
Sbjct: 115 CV----------KMLLESGADPTIETDSGYNSMDLAVALG-YRSVQQVIES 154

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
           GRTAL +  + + +   R+L++     LK     G+  IHDAA+     T++  L+F   
Sbjct: 38  GRTALQVMKLGNPEIARRLLLRGANPDLKD--RTGFAVIHDAARAGFLDTLQTLLEF--- 92
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
                +  +++   EGNLPLH A   G  + VE  +K + + +  +     T   LA   
Sbjct: 93  -----QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
           G  ++V LM
Sbjct: 148 GRNEVVSLM 156

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
           GRTAL +  + + +   R+L++     LK     G+  IHDAA+     T++  L+F   
Sbjct: 38  GRTALQVMKLGNPEIARRLLLRGANPDLKD--RTGFAVIHDAARAGFLDTLQTLLEF--- 92
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
                +  +++   EGNLPLH A   G  + VE  +K + + +  +     T   LA   
Sbjct: 93  -----QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
           G  ++V LM
Sbjct: 148 GRNEVVSLM 156

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 90/206 (43%), Gaps = 25/206 (12%)
Query: 429 TPVHLACSQGA-LDIVRLMFNLQPSEKLVC---------LNST-DAQKMTPLHCAAMFDR 477
           TP+ +A  +G  LD    + N + S   V          LN+T D    T LH AA F R
Sbjct: 4   TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 537
            D  + L+D GAD N  D   R+PL  A +         L+RN+A     ++N R     
Sbjct: 64  ADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA----TNLNAR----- 114
Query: 538 LVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
             ++ G      A  +A   + E+LI   A IN  +NS ++ LH AA       V  LL 
Sbjct: 115 --MHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM 172
Query: 598 SERGSFIINESDGEGLTPLHIASKEG 623
                   +  D +  TPL +A++EG
Sbjct: 173 HHANR---DAQDDKDETPLFLAAREG 195

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 22/177 (12%)
Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR---GGWKTV 514
           +N+ D  + TPL  A +  R  +V YL   GAD  + +K +RS L  AA+    G     
Sbjct: 159 VNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYX 218
Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN 574
           L   + K +I   D N    L ++  N G       ++VA+  L   L+  GA ++    
Sbjct: 219 LNSTKLKGDIEELDRNGXTALXIVAHNEG------RDQVASAKL---LVEKGAKVDYDGA 269
Query: 575 SNE--------SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           + +        + LH AA+      VK L+  E+GS   ++ D +G TP+ +A++EG
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNXPIVKYLV-GEKGSN-KDKQDEDGKTPIXLAAQEG 324

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
           GRTAL +  + + +   R+L++     LK    N    IHDAA+     T++  L+F   
Sbjct: 38  GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGNAV--IHDAARAGFLDTLQTLLEF--- 92
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
                +  +++   EGNLPLH A   G  + VE  +K + + +  +     T   LA   
Sbjct: 93  -----QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
           G  ++V LM
Sbjct: 148 GRNEVVSLM 156

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
           R ++H   LN  G          +  +   L+  GA  N+++ S  SP+H AAR G  +T
Sbjct: 24  RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT 83
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
           +K L+  E G+  +N  DG G  P+H+A +EG H +V  F
Sbjct: 84  LKVLV--EHGA-DVNVPDGTGALPIHLAVQEG-HTAVVSF 119

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
           R ++H   LN  G          +  +   L+  GA  N+++ S  SP+H AAR G  +T
Sbjct: 30  RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT 89
Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
           +K L+  E G+  +N  DG G  P+H+A +EG H +V  F
Sbjct: 90  LKVLV--EHGA-DVNVPDGTGALPIHLAVQEG-HTAVVSF 125

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           N  D+   TPL  A M    + +  L++    L   D E  + L+ A           L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
              +N+  KD + +  L   ++ G   +  F            L+  GA +N +N   E+
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF------------LLEHGANVNDRNLEGET 136
Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
           PL +A++YGR   VKKLL  E G+  I+  D  GLT    A   G    + IF
Sbjct: 137 PLIVASKYGRSEIVKKLL--ELGA-DISARDLTGLTAEASARIFGRQEVIKIF 186

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 92/224 (41%), Gaps = 18/224 (8%)
Query: 33  QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
           ++ L LA + N V  L  LL+++   ++ Q G  G TALHIAA+YD  E A +L+   PE
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 93  CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAE 152
             +         +      G   +H A  N +   +   L  G S+       +  +   
Sbjct: 63  LVF-------EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115
Query: 153 -----GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
                G  PL  A   G  + V L ++ GA I  Q    +T +H+   Q        M+N
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175
Query: 208 LQPS----EKLVCLN-STDAQKMTPLHCAAMFDRCDVVQYLIDE 246
           L  S    + L  L    + Q +TP   A +     + Q+L+ +
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 15/217 (6%)
Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKD--- 341
           ++ L LA + N V  L  LL+++   ++ Q G  G TALHIAA+YD  E A +L++    
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 342 -FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAE-----GN 395
                +      G   +H A  N +   +   L  G S+       +  +        G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS--- 452
            PL  A   G  + V L ++ GA I  Q    +T +H+   Q        M+NL  S   
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDG 182
Query: 453 -EKLVCLN-STDAQKMTPLHCAAMFDRCDVVQYLIDE 487
            + L  L    + Q +TP   A +     + Q+L+ +
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
           GRTAL +  + + +   R+L++     LK     G+  IHDAA+     T++  L+    
Sbjct: 38  GRTALQVMKLGNPEIARRLLLRGANPDLKD--RTGFAVIHDAARAGFLDTLQTLLE---- 91
Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-SGAKISTQQFDLSTPVHLACSQ 437
                +  +++   EGNLPLH A   G  + VE  +K + + +  +     T   LA   
Sbjct: 92  ----NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 438 GALDIVRLM 446
           G  ++V LM
Sbjct: 148 GRNEVVSLM 156

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
           L+  GA  N+++ S  SP+H AAR G  +T+K L+  E G+  +N  D  G  P+H+A +
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV--EHGA-DVNALDSTGSLPIHLAIR 116
Query: 622 EGFHYSVSIF 631
           EG H SV  F
Sbjct: 117 EG-HSSVVSF 125

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
           L+  GA  N+++ S  SP+H AAR G  +T+K L+  E G+  +N  D  G  P+H+A +
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV--EHGA-DVNALDSTGSLPIHLAIR 118
Query: 622 EGFHYSVSIF 631
           EG H SV  F
Sbjct: 119 EG-HSSVVSF 127

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 145 MISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVR 203
           ++++ D+ GN  LH +V   +F  V+  L SG  K+  Q     +P+ L     AL  ++
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT----ALATLK 158
Query: 204 LMFNLQPSEKLVCLNSTDAQK----MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
              +++   +L  L + +A+      T L  A    R DVV+ L+   AD+NV D +  +
Sbjct: 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST 218
Query: 260 PLLLAASRGGWKTNGV 275
            L+ A   G  +  G+
Sbjct: 219 ALMCACEHGHKEIAGL 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	641
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-78
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-72
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-71
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-52
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-60
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-53
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-53
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-46
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-39
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-52
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-50
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-48
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-44
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-42
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-38
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-43
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-42
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-40
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-40
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-38
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-41
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-40
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-28
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-38
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-33
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-34
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-30
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-35
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-28
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-32
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-28
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-32
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-32
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	5e-32
2pnn_A	273	Transient receptor potential cation channel subfa	2e-23
2pnn_A	273	Transient receptor potential cation channel subfa	2e-21
2pnn_A	273	Transient receptor potential cation channel subfa	1e-20
2pnn_A	273	Transient receptor potential cation channel subfa	1e-12
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	2e-31
2rfa_A	232	Transient receptor potential cation channel subfa	8e-29
2rfa_A	232	Transient receptor potential cation channel subfa	5e-28
2rfa_A	232	Transient receptor potential cation channel subfa	5e-25
2rfa_A	232	Transient receptor potential cation channel subfa	1e-23
2rfa_A	232	Transient receptor potential cation channel subfa	3e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-30
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-31
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-30
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-30
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-30
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-21
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-30
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-29
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-10
2etb_A	256	Transient receptor potential cation channel subfam	4e-27
2etb_A	256	Transient receptor potential cation channel subfam	1e-22
2etb_A	256	Transient receptor potential cation channel subfam	5e-22
2etb_A	256	Transient receptor potential cation channel subfam	1e-19
2etb_A	256	Transient receptor potential cation channel subfam	1e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-26
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  254 bits (652), Expect = 3e-78
 Identities = 108/474 (22%), Positives = 178/474 (37%), Gaps = 68/474 (14%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
              G  PLH A   G    V+  L+ GA  +     + TP+H+A   G  ++ +      
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----- 65

Query: 210 PSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
               L+     +N+      TPLHCAA     ++V+ L++  A+ N+      +PL +AA
Sbjct: 66  ----LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121

Query: 266 SRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHI 325
             G                    H+         +L LL+ +         + G T LH+
Sbjct: 122 REG--------------------HVE-------TVLALLEKE--ASQACMTKKGFTPLHV 152

Query: 326 AAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREE 385
           AA Y     A +L+ +  A    A  NG  P+H A  + +   +++ L  G S       
Sbjct: 153 AAKYGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP--- 208

Query: 386 MISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
                A  G  PLH A      +     L+ G   + +     TP+HLA  +G  ++V L
Sbjct: 209 -----AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263

Query: 446 MFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
           +       K    N  +   +TPLH  A      V   LI  G  ++   +   +PL +A
Sbjct: 264 LL-----SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318

Query: 506 ASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINL 565
           +  G  K V  L++++A++  K     + LH     G   I               L+  
Sbjct: 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL------------LLKN 366

Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
           GA  N  ++   +PL +A R G  +    L      +  +  SD   ++     
Sbjct: 367 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  237 bits (608), Expect = 7e-72
 Identities = 104/482 (21%), Positives = 177/482 (36%), Gaps = 71/482 (14%)

Query: 58  IDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIH 117
           I    GGE G T LH+A+        + L+              GAS   +      P+H
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQR------------GASPNVSNVKVETPLH 52

Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
            AA+   ++  +  LQ            ++    +   PLH A   G    V+L L++ A
Sbjct: 53  MAARAGHTEVAKYLLQNKAK--------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104

Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
             +       TP+H+A  +G ++ V  +   + S           +  TPLH AA + + 
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-----QACMTKKGFTPLHVAAKYGKV 159

Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKV 297
            V + L++  A  N   K   +PL +A                        +L       
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHN--------------------NLD------ 193

Query: 298 PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPI 357
            I+ +LL             +G T LHIAA  +  E AR L+  +G S       G  P+
Sbjct: 194 -IVKLLLPRG--GSPHSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPL 249

Query: 358 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG 417
           H AA+   ++ + + L    +     +         G  PLH     G     ++ +K G
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNK--------SGLTPLHLVAQEGHVPVADVLIKHG 301

Query: 418 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 477
             +        TP+H+A   G + +V+ +      +    +N+      +PLH AA    
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLL-----QHQADVNAKTKLGYSPLHQAAQQGH 356

Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV---LTLVRNKANILLKDINRRNI 534
            D+V  L+  GA  N +  +  +PL +A   G          +    + +L+ D +R + 
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 416

Query: 535 LH 536
             
Sbjct: 417 PE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  235 bits (601), Expect = 8e-71
 Identities = 107/406 (26%), Positives = 169/406 (41%), Gaps = 58/406 (14%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
                  +TPLH A+      +V+ L+  GA  NV + +  +PL +AA  G         
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG--------- 58

Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI 337
                      H         +   LLQ K    +    +  +T LH AA        ++
Sbjct: 59  -----------HTE-------VAKYLLQNK--AKVNAKAKDDQTPLHCAARIGHTNMVKL 98

Query: 338 LVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP 397
           L+ +  A+   A + G+ P+H AA+    +T+   L+   S  C  +        +G  P
Sbjct: 99  LL-ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK--------KGFTP 149

Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           LH A   G  +  EL L+  A  +    +  TP+H+A     LDIV+L+     S     
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS----- 204

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
            +S      TPLH AA  ++ +V + L+  G   N    +  +PL LAA  G  + V  L
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264

Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
           +  +AN  L + +    LHL+     GH+      VA     + LI  G  ++       
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQE--GHV-----PVA-----DVLIKHGVMVDATTRMGY 312

Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           +PLH+A+ YG    VK LL     +  +N     G +PLH A+++G
Sbjct: 313 TPLHVASHYGNIKLVKFLLQ--HQA-DVNAKTKLGYSPLHQAAQQG 355

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  183 bits (468), Expect = 8e-52
 Identities = 84/377 (22%), Positives = 131/377 (34%), Gaps = 91/377 (24%)

Query: 247 GADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
           G       +   +PL +A+  G                    HL        I+  LLQ 
Sbjct: 4   GISGGGGGESGLTPLHVASFMG--------------------HLP-------IVKNLLQR 36

Query: 307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASS 366
                         T LH+AA     E A+ L++                 + A  NA +
Sbjct: 37  G--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-----------------NKAKVNAKA 77

Query: 367 KTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 426
           K                         +   PLH A   G    V+L L++ A  +     
Sbjct: 78  K-------------------------DDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 112

Query: 427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 486
             TP+H+A  +G ++ V  +   + S           +  TPLH AA + +  V + L++
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEAS-----QACMTKKGFTPLHVAAKYGKVRVAELLLE 167

Query: 487 EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 546
             A  N   K   +PL +A        V  L+    +      N    LH+        +
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ--NQV 225

Query: 547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIIN 606
                EVA      +L+  G   N ++    +PLHLAA+ G    V  LLS  + +   N
Sbjct: 226 -----EVA-----RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS--KQA-NGN 272

Query: 607 ESDGEGLTPLHIASKEG 623
             +  GLTPLH+ ++EG
Sbjct: 273 LGNKSGLTPLHLVAQEG 289

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (328), Expect = 1e-32
 Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 16/170 (9%)

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
                  +TPLH A+      +V+ L+  GA  NV + +  +PL +AA  G  +    L+
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67

Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
           +NKA +  K  + +  LH       GH       +      + L+   A  NL   +  +
Sbjct: 68  QNKAKVNAKAKDDQTPLHCAARI--GHT-----NMV-----KLLLENNANPNLATTAGHT 115

Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
           PLH+AAR G   TV  LL   + +        +G TPLH+A+K G    V
Sbjct: 116 PLHIAAREGHVETVLALLE--KEA-SQACMTKKGFTPLHVAAKYG-KVRV 161

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  101 bits (253), Expect = 6e-23
 Identities = 46/232 (19%), Positives = 84/232 (36%), Gaps = 33/232 (14%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             G +    + +    LHLA +     ++ +LL  +   +   G + G T LH+ A    
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGH 290

Query: 80  DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
              A +L+              G  +      GY P+H A+   + K ++  LQ    + 
Sbjct: 291 VPVADVLIKH------------GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338

Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
                        G  PLH A   G    V L LK+GA  +    D +TP+ +A   G +
Sbjct: 339 AK--------TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI 390

Query: 200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
            +  ++     +++   +  +D  +M+             V  ++D   D  
Sbjct: 391 SVTDVL--KVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSEDEG 431

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  203 bits (519), Expect = 7e-60
 Identities = 60/417 (14%), Positives = 125/417 (29%), Gaps = 82/417 (19%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
             +D + M  +H AA   + D V+ LI+ G    + ++   + L LA             
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK----------- 62

Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI 337
                          +         L    ++  +     HG+  +H+A + +  +    
Sbjct: 63  ---FGCVDTA-----KY--------LASVGEVHSL----WHGQKPIHLAVMANKTDLVVA 102

Query: 338 LVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP 397
           LV +           G  P     +    +  E+                 +   +G   
Sbjct: 103 LV-EGAKE------RGQMPESLLNECDEREVNEI--------------GSHVKHCKGQTA 141

Query: 398 LHSAVHGGD--FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
           LH  V  G    + +++ ++ GA  + +     TP+  A      + + LM +  PS+  
Sbjct: 142 LHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201

Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVL 515
           + L+  + Q  + LH A + +  DV    ++ G D+N+ D E   PL L+          
Sbjct: 202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTK 261

Query: 516 TLV-------------RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENL 562
            L+              N   +L   +   + +                EV      + L
Sbjct: 262 ELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP--SKQ-----EVL-----QLL 309

Query: 563 INLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
                 +    N+         +       +  L+    +  +            ++
Sbjct: 310 QEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA--PSA-PVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  186 bits (475), Expect = 2e-53
 Identities = 55/457 (12%), Positives = 125/457 (27%), Gaps = 100/457 (21%)

Query: 51  LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS 110
           +  +   ++ ++  +     +H+AA     +  R L+              G S      
Sbjct: 5   MTDFPK-LNRIKSDDENMEKIHVAARKGQTDEVRRLIET------------GVSPTIQNR 51

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
            G   +H A K     T +     GE                G  P+H AV       V 
Sbjct: 52  FGCTALHLACKFGCVDTAKYLASVGEVHS----------LWHGQKPIHLAVMANKTDLVV 101

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC 230
             ++   +          P  L       ++  +             +    +  T LH 
Sbjct: 102 ALVEGAKE------RGQMPESLLNECDEREVNEIG-----------SHVKHCKGQTALHW 144

Query: 231 AAMF--DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVL 288
                 +  ++++ L+  GA     DK   +PL+ A                        
Sbjct: 145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFR-------------------- 184

Query: 289 HLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKR 348
           +       + +++  +  K  + +    + G + LH A + ++++ A   V + G  +  
Sbjct: 185 NREA----LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV-EMGIDVNM 239

Query: 349 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFK 408
             +    P++ + + A     +  LQ                                F 
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQ----------------------------KTDVFL 271

Query: 409 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP 468
                  +G  +   +      V  A      ++++L+      EKL  +  +       
Sbjct: 272 IQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ-----EKLDEVVRSLNTGAGG 326

Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 505
                      V +  +   A +    + +     ++
Sbjct: 327 AVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  185 bits (473), Expect = 3e-53
 Identities = 57/402 (14%), Positives = 126/402 (31%), Gaps = 70/402 (17%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           D E    +H A   G    V   +++G   + Q     T +HLAC  G +D  +      
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY----- 71

Query: 210 PSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
               L       +        P+H A M ++ D+V  L++   +        + P  L  
Sbjct: 72  ----LASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERG------QMPESLLN 119

Query: 266 SRGGWKTNGVNTRILNNKKQAVLHLATELNK--VPILLILLQYKDMIDILQGGEHGRTAL 323
                + N + + + + K Q  LH    L    + ++ IL+Q           +   T L
Sbjct: 120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG--ASPTAKDKADETPL 177

Query: 324 HIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 383
             A  +   E   +++    +                  + ++K                
Sbjct: 178 MRAMEFRNREALDLMMDTVPSK------------SSLRLDYANK---------------- 209

Query: 384 EEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 443
                    +GN  LH A+           ++ G  ++ +  + + P++L+     + + 
Sbjct: 210 ---------QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLT 260

Query: 444 RL------MFNLQ--PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
           +       +F +Q  P      +       +  +  AA   + +V+Q L ++  ++    
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSL 320

Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL 537
                  +    +         +   A +  +  +R     +
Sbjct: 321 NTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  166 bits (422), Expect = 5e-46
 Identities = 51/340 (15%), Positives = 107/340 (31%), Gaps = 62/340 (18%)

Query: 303 LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAK 362
           +  +   ++ ++  +     +H+AA     +  R L+ + G S       G   +H A K
Sbjct: 5   MTDFPK-LNRIKSDDENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACK 62

Query: 363 NASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKIST 422
                T +     GE                G  P+H AV       V   ++   +   
Sbjct: 63  FGCVDTAKYLASVGEVHS----------LWHGQKPIHLAVMANKTDLVVALVEGAKE--- 109

Query: 423 QQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF--DRCDV 480
                  P  L       ++  +             +    +  T LH       +  ++
Sbjct: 110 ---RGQMPESLLNECDEREVNEIG-----------SHVKHCKGQTALHWCVGLGPEYLEM 155

Query: 481 VQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV-----RNKANILLKDINRRNIL 535
           ++ L+  GA     DK   +PL+ A      + +  ++     ++   +   +    + L
Sbjct: 156 IKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215

Query: 536 HLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
           H  +L          E+VA        + +G  +N+++N +  PL+L+ R       K+L
Sbjct: 216 HWAILIN--W-----EDVA-----MRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263

Query: 596 LSSERGSFI------------INESDGEGLTPLHIASKEG 623
           L   +                +       L  +  A+   
Sbjct: 264 LQ--KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS 301

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  147 bits (374), Expect = 2e-39
 Identities = 65/364 (17%), Positives = 118/364 (32%), Gaps = 59/364 (16%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           LI   +GV+  I N      LHLA +   V     L    ++  +     HG+  +H+A 
Sbjct: 39  LI--ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL----WHGQKPIHLAV 92

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
           + +  +    LV                        G  P     +    +  E+     
Sbjct: 93  MANKTDLVVALVEG------------AKE------RGQMPESLLNECDEREVNEI----- 129

Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVHGGD--FKAVELCLKSGAKISTQQFDLSTPVHLA 193
                       +   +G   LH  V  G    + +++ ++ GA  + +     TP+  A
Sbjct: 130 ---------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRA 180

Query: 194 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 253
                 + + LM +  PS+  + L+  + Q  + LH A + +  DV    ++ G D+N+ 
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME 240

Query: 254 DKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNK-VPILLILLQYKDMIDI 312
           D E   PL L+                         L   L K    L+    Y +   +
Sbjct: 241 DNEHTVPLYLSVR--------------AAMVLLTKEL---LQKTDVFLIQACPYHNGTTV 283

Query: 313 LQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF 372
           L         +  AA     E  ++L +     + R+ + G        K A+     + 
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEK-LDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

Query: 373 LQFG 376
           L   
Sbjct: 343 LAPS 346

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  107 bits (270), Expect = 2e-25
 Identities = 35/284 (12%), Positives = 78/284 (27%), Gaps = 45/284 (15%)

Query: 3   LLSVQSDNKNKSRLIPSSS-------GVNTRILNNKKQAVLHLATELNK--VPILLILLQ 53
           L+   +  + +      +         + + + + K Q  LH    L    + ++ IL+Q
Sbjct: 103 LVE-GAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161

Query: 54  YKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGY 113
                      +   T L  A  +   E   +++   P             L  A   G 
Sbjct: 162 LG--ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS-------SLRLDYANKQGN 212

Query: 114 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVEL-- 171
             +H A           F++ G  +           D E  +PL+ +V        +   
Sbjct: 213 SHLHWAILINWEDVAMRFVEMGIDVNME--------DNEHTVPLYLSVRAAMVLLTKELL 264

Query: 172 -----------CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNST 220
                         +G  +   +      V  A      ++++L+      EKL  +  +
Sbjct: 265 QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ-----EKLDEVVRS 319

Query: 221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
                             V +  +   A +    + +     ++
Sbjct: 320 LNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  104 bits (262), Expect = 2e-24
 Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 29/168 (17%)

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
             +D + M  +H AA   + D V+ LI+ G    + ++   + L LA   G   T   L 
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA 73

Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
                      + +  +HL V+           ++        L+             + 
Sbjct: 74  SVGEVH--SLWHGQKPIHLAVMAN--KT-----DLV-----VALVEGAK------ERGQM 113

Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHY 626
           P  L          +            +    +G T LH     G  Y
Sbjct: 114 PESLLNECDEREVNEIG---------SHVKHCKGQTALHWCVGLGPEY 152

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.1 bits (144), Expect = 2e-09
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 559 GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI 618
           G             ++ N   +H+AAR G+ + V++L+    G       +  G T LH+
Sbjct: 3   GSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIE--TGVS-PTIQNRFGCTALHL 59

Query: 619 ASKEG 623
           A K G
Sbjct: 60  ACKFG 64

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  183 bits (467), Expect = 1e-52
 Identities = 83/395 (21%), Positives = 140/395 (35%), Gaps = 60/395 (15%)

Query: 239 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK-------TNGVNTRILNNKKQAVLHLA 291
               L D  A   +  + K+  LL AA  G  +          VN    + +K   LHLA
Sbjct: 6   SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65

Query: 292 TELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACS 351
              N+V I+ +LLQ+    D+    + G   LH A  Y   E   +L+K  GA +     
Sbjct: 66  AGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDL 122

Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
             + P+H+AA     +   + L  G                 G   +  A      + + 
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH--------GKSAVDMAPTPELRERLT 174

Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC 471
              K  +            +  A  +  L  V+    L+                T LHC
Sbjct: 175 YEFKGHS------------LLQAAREADLAKVKKTLALEIIN-----FKQPQSHETALHC 217

Query: 472 AAM---FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
           A       R  V + L+ +GA++N  +K+  +PL +AA R     +  L ++ A +   D
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277

Query: 529 INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGR 588
              +  LH   L G  H+     +         L++ G+  ++ +    +   +      
Sbjct: 278 SLGQTALHRAALAG--HL-----QTC-----RLLLSYGSDPSIISLQGFTAAQMGNE--- 322

Query: 589 YNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
              V+++LS       +  SD +    L  ASK G
Sbjct: 323 --AVQQILSES---TPMRTSDVDY--RLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  176 bits (450), Expect = 4e-50
 Identities = 80/423 (18%), Positives = 138/423 (32%), Gaps = 82/423 (19%)

Query: 168 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP 227
           A++L     AK           +  A   G  + +  +         V  +++D +K TP
Sbjct: 7   ALDL-ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT----PLNVNCHASDGRKSTP 61

Query: 228 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAV 287
           LH AA ++R  +VQ L+  GAD++  DK    PL  A S                  +  
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS--------------YGHYEVT 107

Query: 288 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLK 347
                EL        LL++     +        T LH AA  +  E   +L+   GA   
Sbjct: 108 -----EL--------LLKHG--ACVNAMDLWQFTPLHEAASKNRVEVCSLLL-SHGADPT 151

Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF 407
               +G   +  A      + +                       +G+  L +A      
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEF-------------------KGHSLLQAAREADLA 192

Query: 408 KAVELCLKSGAKISTQQFDLSTPVHLACSQG---ALDIVRLMFNLQPSEKLVCLNSTDAQ 464
           K  +  L        Q     T +H A +        +  L+       K   +N  +  
Sbjct: 193 KVKKT-LALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR-----KGANVNEKNKD 246

Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
            MTPLH AA     DV++ L   GA +N LD   ++ L  AA  G  +T   L+   ++ 
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306

Query: 525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
            +  +       +              E       + +++    +   +   +  L  A+
Sbjct: 307 SIISLQGFTAAQM------------GNEAV-----QQILSESTPMRTSD--VDYRLLEAS 347

Query: 585 RYG 587
           + G
Sbjct: 348 KAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  172 bits (438), Expect = 2e-48
 Identities = 89/458 (19%), Positives = 147/458 (32%), Gaps = 120/458 (26%)

Query: 64  GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNA 123
           GE G++AL +A                         D  A            + +AA++ 
Sbjct: 1   GEFGKSALDLA-------------------------DPSAKAVLTGEYKKDELLEAARSG 35

Query: 124 SSK-TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 182
           + +  M +      +   S        D   + PLH A      + V+L L+ GA +  +
Sbjct: 36  NEEKLMALLTPLNVNCHAS--------DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87

Query: 183 QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCD 238
                 P+H ACS G  ++  L         L+    C+N+ D  + TPLH AA  +R +
Sbjct: 88  DKGGLVPLHNACSYGHYEVTEL---------LLKHGACVNAMDLWQFTPLHEAASKNRVE 138

Query: 239 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVP 298
           V   L+  GAD  +++   +S + +A +                K  ++L  A E +   
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMAPTPE-----LRERLTYEFKGHSLLQAAREADLAK 193

Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAI---YDFDECARILVKDFGASLKRACSNGYY 355
           +   L             +   TALH A         + A +L++               
Sbjct: 194 VKKTLALEIINFK---QPQSHETALHCAVASLHPKRKQVAELLLR--------------- 235

Query: 356 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK 415
               A  N  +K                         +   PLH A        +E+  K
Sbjct: 236 --KGANVNEKNK-------------------------DFMTPLHVAAERAHNDVMEVLHK 268

Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHC 471
            GAK++       T +H A   G L   RL         L+      +    Q  T    
Sbjct: 269 HGAKMNALDSLGQTALHRAALAGHLQTCRL---------LLSYGSDPSIISLQGFTAAQM 319

Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
                  + VQ ++ E   +   D +    LL A+  G
Sbjct: 320 GN-----EAVQQILSESTPMRTSDVD--YRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  137 bits (348), Expect = 6e-36
 Identities = 70/353 (19%), Positives = 121/353 (34%), Gaps = 58/353 (16%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
              VN    + +K   LHLA   N+V I+ +LLQ+    D+    + G   LH A  Y  
Sbjct: 46  PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGH 103

Query: 80  DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
            E   +L+              GA +       + P+H+AA     +   + L  G    
Sbjct: 104 YEVTELLLKH------------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151

Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
                     +  G   +  A      + +    K  +            +  A  +  L
Sbjct: 152 LV--------NCHGKSAVDMAPTPELRERLTYEFKGHS------------LLQAAREADL 191

Query: 200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM---FDRCDVVQYLIDEGADLNVLDKE 256
             V+    L+                T LHCA       R  V + L+ +GA++N  +K+
Sbjct: 192 AKVKKTLALEIIN-----FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246

Query: 257 KRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMI 310
             +PL +AA R           +G     L++  Q  LH A     +    +LL Y    
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG--S 304

Query: 311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKN 363
           D       G TA  +       E  + ++ +    ++ +  +  Y + +A+K 
Sbjct: 305 DPSIISLQGFTAAQMGN-----EAVQQILSE-STPMRTS--DVDYRLLEASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  126 bits (319), Expect = 4e-32
 Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 32/234 (13%)

Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
            L +A  G + K + L               STP+HLA     + IV+L+      +   
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL-----QHGA 82

Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
            +++ D   + PLH A  +   +V + L+  GA +N +D  + +PL  AAS+   +    
Sbjct: 83  DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142

Query: 517 LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
           L+ + A+  L + + ++ + +              E              +         
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPE--LR-----ERL-----TYEFKGHS--------- 181

Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSI 630
              L  AAR      VKK L+ E    I  +      T LH A          +
Sbjct: 182 ---LLQAAREADLAKVKKTLALEI---INFKQPQSHETALHCAVASLHPKRKQV 229

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  105 bits (265), Expect = 6e-25
 Identities = 51/264 (19%), Positives = 86/264 (32%), Gaps = 40/264 (15%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             G     ++  +   LH A   N+V +  +LL +    D      HG++A+ +A   + 
Sbjct: 112 KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG--ADPTLVNCHGKSAVDMAPTPEL 169

Query: 80  DECARILVSEQP------ECDWIMVKDF---GASLKRACSNGYYPIHDAAKNASSKTMEV 130
            E                E D   VK          +   +    +H A  +   K  +V
Sbjct: 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229

Query: 131 --FLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 188
              L      G +    ++  + +   PLH A        +E+  K GAK++       T
Sbjct: 230 AELLL---RKGAN----VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT 282

Query: 189 PVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
            +H A   G L   RL         L+      +    Q  T           + VQ ++
Sbjct: 283 ALHRAALAGHLQTCRL---------LLSYGSDPSIISLQGFTAAQMGN-----EAVQQIL 328

Query: 245 DEGADLNVLDKEKRSPLLLAASRG 268
            E   +   D +    LL A+  G
Sbjct: 329 SESTPMRTSDVD--YRLLEASKAG 350

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  161 bits (409), Expect = 3e-44
 Identities = 69/436 (15%), Positives = 119/436 (27%), Gaps = 105/436 (24%)

Query: 174 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM 233
           +   K           +  A   G +   R              N      + P      
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQR--------------NELQHYSLYPNPQGYG 70

Query: 234 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATE 293
                +  +           + E    L   A+               +           
Sbjct: 71  NGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA--------------GSYA--------- 107

Query: 294 LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNG 353
                I   + +    ++I+    H RT LH  A     E +  L+       K   + G
Sbjct: 108 -----ITEPITRES--VNIIDP-RHNRTVLHWIASNSSAEKSEDLIVH---EAKECIAAG 156

Query: 354 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELC 413
                 A  NA                            + N PL  AV     + V   
Sbjct: 157 ------ADVNAMDC-------------------------DENTPLMLAVLARRRRLVAYL 185

Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA 473
           +K+GA  +       + +H A +     ++  M  L  ++    +   D   MT L   A
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANRDFGMMVYM--LNSTKLKGDIEELDRNGMTALMIVA 243

Query: 474 MF---DRCDVVQYLIDEGADLNVL--------DKEKRSPLLLAASRGGWKTVLTLVRNK- 521
                D+    + L+++GA ++            + R+ L  AA       V  LV  K 
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303

Query: 522 ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLH 581
           +N   +D + +  + L    G   I     EV        LI  GA +   + ++ +   
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEG--RI-----EVV-----MYLIQQGASVEAVDATDHTARQ 351

Query: 582 LAARYGRYNTVKKLLS 597
           LA     +N V     
Sbjct: 352 LAQANNHHNIVDIFDR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  156 bits (396), Expect = 2e-42
 Identities = 62/319 (19%), Positives = 119/319 (37%), Gaps = 45/319 (14%)

Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
            + +L  A+   + +  R  ++              YP      N +    +      + 
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGNDFLGDFNHTNLQI 86

Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
                 E          + LH+   G  +   E   +    I   + +  T +H   S  
Sbjct: 87  PTEPEPE--------SPIKLHTEAAG-SYAITEPITRESVNIIDPRHN-RTVLHWIASNS 136

Query: 439 ALDIVRLMFNLQPSEKLVC---LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
           + +    +   +  E +     +N+ D  + TPL  A +  R  +V YL+  GAD  + +
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN 196

Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNK---ANILLKDINRRNILHLLVLNGGGHIKEFAEE 552
           K +RS L  AA+   +  ++ ++ +     +I   D N    L ++  N G      A+ 
Sbjct: 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256

Query: 553 VAAVFLGENLINLGACINL--------KNNSNESPLHLAARYGRYNTVKKLLSSERGSFI 604
                    L+  GA ++         +     + LH AA+      VK L+  E+GS  
Sbjct: 257 ---------LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG-EKGS-N 305

Query: 605 INESDGEGLTPLHIASKEG 623
            ++ D +G TP+ +A++EG
Sbjct: 306 KDKQDEDGKTPIMLAAQEG 324

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  144 bits (365), Expect = 4e-38
 Identities = 64/434 (14%), Positives = 125/434 (28%), Gaps = 84/434 (19%)

Query: 8   SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 67
           S N+ + R + ++S     + N +K    H +   ++  +L             +   + 
Sbjct: 2   SGNRTRKRRMINASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYS 61

Query: 68  RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT 127
                       D       +                            +          
Sbjct: 62  LYPNPQGYGNGNDFLGDFNHT----------------------------NLQIPTEP--- 90

Query: 128 MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 187
                                 + E  + LH+    G +   E   +    I   + +  
Sbjct: 91  ----------------------EPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN-R 126

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVC---LNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
           T +H   S  + +    +   +  E +     +N+ D  + TPL  A +  R  +V YL+
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 245 DEGADLNVLDKEKRSPLLLAASRG---------GWKTNGVNTRILNNKKQAVLHLATELN 295
             GAD  + +K +RS L  AA+                  +   L+      L +     
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246

Query: 296 ---KVPILLILLQY------KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASL 346
              +V    +L++                   GRTALH AA        + LV + G++ 
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306

Query: 347 KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGD 406
            +   +G  PI  AA+    + +   +      G S E +     A  +     A     
Sbjct: 307 DKQDEDGKTPIMLAAQEGRIEVVMYLI----QQGASVEAV----DATDHTARQLAQANNH 358

Query: 407 FKAVELCLKSGAKI 420
              V++  +   + 
Sbjct: 359 HNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  128 bits (323), Expect = 2e-32
 Identities = 44/257 (17%), Positives = 76/257 (29%), Gaps = 36/257 (14%)

Query: 382 SREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALD 441
            +              L  A + G  K     L+  +           P       G   
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSL---------YPNPQGYGNGNDF 75

Query: 442 IVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSP 501
           +            L      + +    LH  A      + + +  E  ++    +  R+ 
Sbjct: 76  LGDFNHT-----NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID-PRHNRTV 128

Query: 502 LLLAASRGGWKTVLTLVRNKANILLK---DINRRNI-----LHLLVLNGGGHIKEFAEEV 553
           L   AS    +    L+ ++A   +    D+N  +      L L VL            +
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR--RR-----RL 181

Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGL 613
                   L+  GA   + N S  S LH AA    +  +  +L+S +    I E D  G+
Sbjct: 182 V-----AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236

Query: 614 TPLHIASKEGFHYSVSI 630
           T L I +       V+ 
Sbjct: 237 TALMIVAHNEGRDQVAS 253

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  157 bits (400), Expect = 1e-43
 Identities = 63/410 (15%), Positives = 113/410 (27%), Gaps = 131/410 (31%)

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVN 276
           +   DA++               ++  + +     V   +  +  L A S          
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDD-GAVFLAACS---------- 49

Query: 277 TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECAR 336
               +   + VL              LL+     DI      G TALH A I D  +  +
Sbjct: 50  ----SGDTEEVL-------------RLLERG--ADINYANVDGLTALHQACIDDNVDMVK 90

Query: 337 ILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNL 396
            LV+                 + A  N                             EG +
Sbjct: 91  FLVE-----------------NGANINQPDN-------------------------EGWI 108

Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
           PLH+A   G     E  +  GA +     +  TP+ +A  +   ++++            
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE---------- 158

Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
            +N                   D  Q+L     +     K   + L +AA++G       
Sbjct: 159 -VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG------- 210

Query: 517 LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
                              +               EV      + LI     +N+K+   
Sbjct: 211 -------------------YT--------------EVL-----KLLIQARYDVNIKDYDG 232

Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHY 626
            +PLH AA +G+    + L+        +   +  G T   +A ++   Y
Sbjct: 233 WTPLHAAAHWGKEEACRILVE--NLC-DMEAVNKVGQTAFDVADEDILGY 279

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  132 bits (334), Expect = 2e-34
 Identities = 58/388 (14%), Positives = 113/388 (29%), Gaps = 104/388 (26%)

Query: 115 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK 174
                    S   +E  +   +               +      +A   GD + V   L+
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKV---------KFDDGAVFLAACSSGDTEEVLRLLE 61

Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHC 230
            GA I+    D  T +H AC    +D+V+          LV     +N  D +   PLH 
Sbjct: 62  RGADINYANVDGLTALHQACIDDNVDMVKF---------LVENGANINQPDNEGWIPLHA 112

Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
           AA     D+ +YLI +GA +  ++ E  +PL +A                   ++ + + 
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE--------------EAMEELLQNE 158

Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
                                + + G     A          +  + L            
Sbjct: 159 ---------------------VNRQGVDIEAARKEEERIMLRDARQWLNS---------- 187

Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAV 410
                          +K+                         G   LH A   G  + +
Sbjct: 188 -------GHINDVRHAKS-------------------------GGTALHVAAAKGYTEVL 215

Query: 411 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 470
           +L +++   ++ + +D  TP+H A   G  +  R++      E L  + + +    T   
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-----ENLCDMEAVNKVGQTAFD 270

Query: 471 CAAMFDRCDVVQYLIDEGADLNVLDKEK 498
            A       + +    +    +   ++K
Sbjct: 271 VADEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  117 bits (295), Expect = 2e-29
 Identities = 60/321 (18%), Positives = 103/321 (32%), Gaps = 63/321 (19%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
                T++      AV   A        +L LL+     DI      G TALH A I D 
Sbjct: 29  VKRKKTKV-KFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDN 85

Query: 80  DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
            +  + LV              GA++ +  + G+ P+H AA        E  +  G  +G
Sbjct: 86  VDMVKFLVEN------------GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133

Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
                     ++EG+ PL  A      + ++  +           D+             
Sbjct: 134 AV--------NSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLR 179

Query: 200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
           D  + + +   +              T LH AA     +V++ LI    D+N+ D +  +
Sbjct: 180 DARQWLNSGHIN-----DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234

Query: 260 PLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 319
           PL  AA                 K++A       +        L++     D+    + G
Sbjct: 235 PLHAAAH--------------WGKEEAC-----RI--------LVENL--CDMEAVNKVG 265

Query: 320 RTALHIAAIYDFDECARILVK 340
           +TA  +A          +  K
Sbjct: 266 QTAFDVADEDILGYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 88.7 bits (221), Expect = 1e-19
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 42/259 (16%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             G +    N      LH A   + V ++  L++     +I Q    G   LH AA   +
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIPLHAAASCGY 118

Query: 80  DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF-------- 131
            + A  L+S+            GA +    S G  P+  A + A  + ++          
Sbjct: 119 LDIAEYLISQ------------GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166

Query: 132 ---LQFGESIGCSREEMISLF----------DAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
               +  E I     +                  G   LH A   G  + ++L +++   
Sbjct: 167 EAARKEEERIML--RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224

Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD 238
           ++ + +D  TP+H A   G  +  R++      E L  + + +    T    A       
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILV-----ENLCDMEAVNKVGQTAFDVADEDILGY 279

Query: 239 VVQYLIDEGADLNVLDKEK 257
           + +    +    +   ++K
Sbjct: 280 LEELQKKQNLLHSEKREKK 298

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  154 bits (391), Expect = 2e-42
 Identities = 66/287 (22%), Positives = 121/287 (42%), Gaps = 41/287 (14%)

Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
              + +  A +N     ++  L+ G ++    EE        G  PLH+AV       VE
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-------GGWTPLHNAVQMSREDIVE 56

Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 467
           L L+ GA    ++ + +TP  LA   G++ +++L          +     +N  D    T
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKL---------FLSKGADVNECDFYGFT 107

Query: 468 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEK----------RSPLLLAASRGGWKTVLTL 517
               AA++ +   +++L   GA++N+  K K           + L+ AA +G  + +  L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 518 VRNK-ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
           +    A++   D   RN L   +L+         E +        L++ GA +N++    
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSD---DSDVEAIT-----HLLLDHGADVNVRGERG 219

Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           ++PL LA        V++LL  E     IN++D +G T L +A +  
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLAVELK 264

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  148 bits (377), Expect = 1e-40
 Identities = 65/377 (17%), Positives = 115/377 (30%), Gaps = 114/377 (30%)

Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
             L  A   +  D+VQ L++ GA++N  ++E           GGW               
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-----------GGW--------------- 40

Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
             LH A ++++  I+ +LL++    D +   ++G T   +AAI    +  ++ +      
Sbjct: 41  TPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLS----- 93

Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG 405
                         A  N                              G      A   G
Sbjct: 94  ------------KGADVNECDF-------------------------YGFTAFMEAAVYG 116

Query: 406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQK 465
             KA++   K GA ++ ++                                         
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQ----------------------------ERLRKGG 148

Query: 466 MTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTVLTLVR----N 520
            T L  AA     +V++ L+DE GAD+N  D   R+ L+ A        V  +      +
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
            A++ ++    +  L L V     H     +      L   L      IN  ++  ++ L
Sbjct: 209 GADVNVRGERGKTPLILAVEKK--H-LGLVQ-----RL---LEQEHIEINDTDSDGKTAL 257

Query: 581 HLAARYGRYNTVKKLLS 597
            LA         + L  
Sbjct: 258 LLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  147 bits (373), Expect = 4e-40
 Identities = 70/356 (19%), Positives = 118/356 (33%), Gaps = 84/356 (23%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS-TPVHLACSQGALDIVRLMFNL 208
             E N  L  AV   D   V+  L+ GA ++ Q+ +   TP+H A      DIV L    
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL---- 57

Query: 209 QPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
                L+              TP   AA+     +++  + +GAD+N  D    +  + A
Sbjct: 58  -----LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112

Query: 265 ASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILL-----ILLQYKDMIDILQGGEHG 319
           A  G                     +      +  L      + L+ K   D  +  + G
Sbjct: 113 AVYG--------------------KVKA----LKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 320 RTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 379
            TAL  AA     E  +IL+ + GA +    + G   +  A  ++    +E         
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI------- 201

Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
                                           L L  GA ++ +     TP+ LA  +  
Sbjct: 202 ------------------------------THLLLDHGADVNVRGERGKTPLILAVEKKH 231

Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
           L +V+ +      ++ + +N TD+   T L  A       + + L   GA  +  D
Sbjct: 232 LGLVQRLL----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (315), Expect = 4e-32
 Identities = 69/327 (21%), Positives = 118/327 (36%), Gaps = 69/327 (21%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDI-LQGGEHGRTALHIAAIYDFDECARILV 87
             +   +L  A +   V ++  LL+     ++  Q  E G T LH A     ++   +L+
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 88  SEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 147
                         GA       NG  P   AA   S K +++FL  G  +         
Sbjct: 60  RH------------GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC------ 101

Query: 148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS----------TPVHLACSQG 197
             D  G      A   G  KA++   K GA ++ ++              T +  A  +G
Sbjct: 102 --DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 198 ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF----DRCDVVQYLIDEGADLNVL 253
            +++++++      E    +N+ D      L  A +     D   +   L+D GAD+NV 
Sbjct: 160 HVEVLKILL----DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215

Query: 254 DKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL 313
            +  ++PL+LA  +                     HL      V  LL     ++ I+I 
Sbjct: 216 GERGKTPLILAVEKK--------------------HLGL----VQRLLE----QEHIEIN 247

Query: 314 QGGEHGRTALHIAAIYDFDECARILVK 340
                G+TAL +A      + A +L K
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  100 bits (251), Expect = 1e-23
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 23/241 (9%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             G +  +          LA     V +L + L      D+ +   +G TA   AA+Y  
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECDFYGFTAFMEAAVYGK 117

Query: 80  DECARILVSEQPECDWIMVKD-FGASLKRACSNGYYPIHDAAKNASSKTMEVFL-QFGES 137
            +  + L         + ++       +R    G   + DAA+    + +++ L + G  
Sbjct: 118 VKALKFLYKRGAN---VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 138 IGCSREEMISLFDAEGNLPLHSAVHGGDFKA----VELCLKSGAKISTQQFDLSTPVHLA 193
           +           D  G   L  A+   D         L L  GA ++ +     TP+ LA
Sbjct: 175 VNAC--------DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226

Query: 194 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 253
             +  L +V+ +      ++ + +N TD+   T L  A       + + L   GA  +  
Sbjct: 227 VEKKHLGLVQRLL----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

Query: 254 D 254
           D
Sbjct: 283 D 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 4e-17
 Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEV 553
             E    L+ A        V  L+   AN+  ++       LH  V           E++
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM--SR-----EDI 54

Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGL 613
                 E L+  GA   L+  +  +P  LAA  G    +K  LS  +G+  +NE D  G 
Sbjct: 55  V-----ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS--KGA-DVNECDFYGF 106

Query: 614 TPLHIASKEG 623
           T    A+  G
Sbjct: 107 TAFMEAAVYG 116

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  152 bits (386), Expect = 6e-42
 Identities = 62/393 (15%), Positives = 104/393 (26%), Gaps = 128/393 (32%)

Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
            +          L+  G+ +  +D                             KQ  +  
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDG----------------------------KQGGMDG 33

Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
           +          I L       ++       + +H AAI+      R L+           
Sbjct: 34  SKPAGPRDFPGIRLLSNP---LMGDAVSDWSPMHEAAIHGHQLSLRNLIS---------- 80

Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAV 410
                     A N  +                          +   PLH A  GG    V
Sbjct: 81  -------QGWAVNIITA-------------------------DHVSPLHEACLGGHLSCV 108

Query: 411 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 470
           ++ LK GA+++    D  TP+  AC  G+ D V L+      +    +        +P+H
Sbjct: 109 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL-----QHGASVQPES-DLASPIH 162

Query: 471 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN 530
            AA     + V  LI  G +++       +PL LA                         
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ--------------------- 201

Query: 531 RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYN 590
                                        + L+  GA +N +    +SPLH   R     
Sbjct: 202 -----QR--------------ACV-----KKLLESGADVN-QGKGQDSPLHAVVRTASEE 236

Query: 591 TVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
               L+    G+      + EG  P+ +   E 
Sbjct: 237 LACLLMD--FGA-DTQAKNAEGKRPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  143 bits (362), Expect = 1e-38
 Identities = 59/342 (17%), Positives = 112/342 (32%), Gaps = 71/342 (20%)

Query: 160 AVHGGDFKAVELCLKSGAKISTQ-----QFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 214
                        +  G+ +++        D S P       G   +             
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP---------- 51

Query: 215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNG 274
             L        +P+H AA+      ++ LI +G  +N++  +  SPL  A   G      
Sbjct: 52  --LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG------ 103

Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
                         HL+        + ILL++     +        T L  A +    +C
Sbjct: 104 --------------HLS-------CVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDC 140

Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
             +L+   GAS++   S+   PIH+AA+    + +   + +G +I               
Sbjct: 141 VNLLL-QHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH--------L 190

Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEK 454
             PL+ A        V+  L+SGA ++  +    +P+H      + ++  L         
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACL--------- 240

Query: 455 LV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 492
           L+       + +A+   P+           + +L  EGA L 
Sbjct: 241 LMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  121 bits (306), Expect = 6e-31
 Identities = 67/358 (18%), Positives = 111/358 (31%), Gaps = 98/358 (27%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L+P  S + +    + KQ  +  +          I L       ++       + +H AA
Sbjct: 14  LVPRGSHMASM---DGKQGGMDGSKPAGPRDFPGIRLLSNP---LMGDAVSDWSPMHEAA 67

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
           I+      R L+S                               A N             
Sbjct: 68  IHGHQLSLRNLIS----------------------------QGWAVNII----------- 88

Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 195
                          A+   PLH A  GG    V++ LK GA+++    D  TP+  AC 
Sbjct: 89  --------------TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 134

Query: 196 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
            G+ D V L+      +    +        +P+H AA     + V  LI  G +++    
Sbjct: 135 SGSWDCVNLLL-----QHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKIS 188

Query: 256 EKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQG 315
              +PL LA                          A        +  LL+    ++    
Sbjct: 189 HLGTPLYLACENQ--------------------QRA-------CVKKLLESGADVNQ--- 218

Query: 316 GEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
           G+   + LH       +E A +L+ DFGA  +   + G  P+        S   ++FL
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLM-DFGADTQAKNAEGKRPVELVPPE--SPLAQLFL 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  151 bits (383), Expect = 2e-41
 Identities = 55/317 (17%), Positives = 92/317 (29%), Gaps = 64/317 (20%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
           E G TALH+A I+  +     L+                  +   +N   +T        
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLL-----------GFSAGHEYLDLQNDLGQT-------- 47

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
                                LH A   G+   VE    +GA +   +    T +HLAC 
Sbjct: 48  --------------------ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR 87

Query: 437 QGALDIVRLM------FNLQPSEKLVCL--NSTDAQKMTPLHCAAMF-DRCDVVQYLIDE 487
             A     ++           S+  +    + T      P    +      +      D 
Sbjct: 88  VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147

Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHI 546
              L   + +  +PL +A      + V  L    A++   +       LHL V       
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ---- 203

Query: 547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIIN 606
              A  V      E L+  GA    +     +PL  A         + L +   G+    
Sbjct: 204 ---AASVL-----ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA--HGA-PEP 252

Query: 607 ESDGEGLTPLHIASKEG 623
           E  G+ L+P   +  + 
Sbjct: 253 EDGGDKLSPCSSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  149 bits (379), Expect = 5e-41
 Identities = 60/382 (15%), Positives = 100/382 (26%), Gaps = 105/382 (27%)

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVN 276
                    T LH A +      + +L+   A    LD +                    
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-------------------- 41

Query: 277 TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECAR 336
               N+  Q  LHLA  L +   +  L        +L     G TALH+A       CA 
Sbjct: 42  ----NDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACRVRAHTCAC 95

Query: 337 ILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNL 396
           +L+     S  R  S+ Y       ++ +  T                            
Sbjct: 96  VLL-QPRPSHPRDASDTYLTQS---QDCTPDTSHAPA----------------------- 128

Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
               +    + +          ++                                    
Sbjct: 129 -AVDSQPNPENEEEPRDEDWRLQL------------------------------------ 151

Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK-RSPLLLAASRGGWKTVL 515
              + +    TPLH A +    ++V+ L D GADLN  +    R+PL LA        + 
Sbjct: 152 --EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209

Query: 516 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
            L++  A+   +    R  L   +L    +       +A       L   GA        
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRP--NP-----ILA-----RLLRAHGAPEPEDGGD 257

Query: 576 NESPLHLAARYGRYNTVKKLLS 597
             SP   +      +   +   
Sbjct: 258 KLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  136 bits (346), Expect = 2e-36
 Identities = 55/367 (14%), Positives = 84/367 (22%), Gaps = 110/367 (29%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAK---ISTQQFDLSTPVHLACSQGALDIVRLMF 206
             +G+  LH AV       ++  L   A    +  Q     T +HLA   G    V    
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK-- 63

Query: 207 NLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
                  L      +   +    T LH A           L+           +      
Sbjct: 64  -------LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116

Query: 263 LAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTA 322
              +              +         +    +         ++  + +      G T 
Sbjct: 117 QDCTP-------------DTSHAPAAVDSQPNPENEEEPRDEDWR--LQLEAENYDGHTP 161

Query: 323 LHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCS 382
           LH+A I+   E  R+L                     A  N    T              
Sbjct: 162 LHVAVIHKDAEMVRLLRD-----------------AGADLNKPEPT-------------- 190

Query: 383 REEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 442
                      G  PLH AV       +EL LK+GA                        
Sbjct: 191 ----------CGRTPLHLAVEAQAASVLELLLKAGADP---------------------- 218

Query: 443 VRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 502
                            +      TPL  A +     + + L   GA       +K SP 
Sbjct: 219 ----------------TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262

Query: 503 LLAASRG 509
             + S  
Sbjct: 263 SSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  125 bits (317), Expect = 2e-32
 Identities = 54/260 (20%), Positives = 90/260 (34%), Gaps = 31/260 (11%)

Query: 20  SSGVNTRILN---NKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI 76
                   L+   +  Q  LHLA  L +   +  L        +L     G TALH+A  
Sbjct: 30  GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACR 87

Query: 77  YDFDECARILVSEQPECDWIMVKDFGASLKRACS--NGYYPIH-DAAKNASSKTMEVFLQ 133
                CA +L+  +P        D   +  + C+    + P   D+  N  ++       
Sbjct: 88  VRAHTCACVLLQPRPSHP-RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146

Query: 134 FGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL-STPVHL 192
           +   +           + +G+ PLH AV   D + V L   +GA ++  +     TP+HL
Sbjct: 147 WRLQLEAE--------NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198

Query: 193 ACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
           A    A  ++ L         L+       +      TPL  A +     + + L   GA
Sbjct: 199 AVEAQAASVLEL---------LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 249 DLNVLDKEKRSPLLLAASRG 268
                  +K SP   + S  
Sbjct: 250 PEPEDGGDKLSPCSSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  124 bits (315), Expect = 3e-32
 Identities = 55/320 (17%), Positives = 92/320 (28%), Gaps = 54/320 (16%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYK-DMIDILQGGEHGRTALHIAAIYDFDECARILV 87
                  LHLA      P L  LL +      +    + G+TALH+AAI         L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 88  SEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 147
           +             GA +  A   G+  +H A +  +     V LQ   S      +   
Sbjct: 66  AA------------GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL 113

Query: 148 LFDAEGNLP------LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDI 201
               +             +    + +          ++  + +D  TP+H+A      ++
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173

Query: 202 VRLMFNLQPSEKLVCLNSTDAQK-MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSP 260
           VRL+      +    LN  +     TPLH A       V++ L+  GAD        R+P
Sbjct: 174 VRLLR-----DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228

Query: 261 LLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGR 320
           L  A               L             L        L  +       + G    
Sbjct: 229 LGSAL--------------LRPNPILA-----RL--------LRAHG--APEPEDGGDKL 259

Query: 321 TALHIAAIYDFDECARILVK 340
           +    +      +      +
Sbjct: 260 SPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  124 bits (313), Expect = 7e-32
 Identities = 52/283 (18%), Positives = 91/283 (32%), Gaps = 24/283 (8%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
           +G   +H A  +     ++  L F         E + L +  G   LH A   G+   VE
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGH-----EYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM------FNLQPSEKLVCL--NSTDA 222
               +GA +   +    T +HLAC   A     ++           S+  +    + T  
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 223 QKMTPLHCAAMF-DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGV 275
               P    +      +      D    L   + +  +PL +A      +        G 
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 276 NTRILNNKK-QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
           +         +  LHLA E     +L +LL+     D       GRT L  A +      
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG--ADPTARMYGGRTPLGSALLRPNPIL 240

Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
           AR+L    GA       +   P   +  ++ S   +   ++ +
Sbjct: 241 ARLLR-AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.3 bits (199), Expect = 7e-17
 Identities = 25/184 (13%), Positives = 43/184 (23%), Gaps = 58/184 (31%)

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD---LNVLDKEKRSPLLLAASRGGWKTV 514
                    T LH A +      + +L+   A    L++ +   ++ L LAA  G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG----- 56

Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN 574
                                                        E L   GA + +   
Sbjct: 57  ---------------------EA--------------STV-----EKLYAAGAGVLVAER 76

Query: 575 SNESPLHLAARYGRYNTVKKLLSS----------ERGSFIINESDGEGLTPLHIASKEGF 624
              + LHLA R   +     LL               +   + +      P  + S+   
Sbjct: 77  GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136

Query: 625 HYSV 628
               
Sbjct: 137 ENEE 140

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 14/108 (12%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
               +  LHLA E     +L +LL+     D       GRT L  A +      AR+L +
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAG--ADPTARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 89  EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 136
                        GA       +   P   +  ++ S   +   ++ +
Sbjct: 247 H------------GAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  149 bits (379), Expect = 2e-41
 Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 29/236 (12%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
               PLH+A   G      + +++GA I T   D  TP+  A     L+ V+        
Sbjct: 10  NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY------- 62

Query: 453 EKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAAS 507
             L+     ++  DA+  T LH AA     +VVQYL+  G  D+N  D    +P++ A  
Sbjct: 63  --LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120

Query: 508 RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGA 567
                 V  L+   ++I ++D      LH    +G   +     ++A     E L+    
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG--CV-----DIA-----EILLAAKC 168

Query: 568 CINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
            ++  N   +SPLH+AAR  RY+ V   LS  R S  +   + EG TPL  AS   
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCVVLFLS--RDS-DVTLKNKEGETPLQCASLNS 221

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  142 bits (360), Expect = 1e-38
 Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 58/288 (20%)

Query: 310 IDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTM 369
           ++     ++ R+ LH AA     +   +LV+                   A  +  S+  
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQ-----------------AGANIDTCSE-- 42

Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
                                  +   PL  A      +AV+  +K+GA +  +  + ST
Sbjct: 43  -----------------------DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST 79

Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
            +HLA  +G  ++V+ +     S   + +N  D    TP+  A  +   D+V+ L+ +G+
Sbjct: 80  CLHLAAKKGHYEVVQYLL----SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135

Query: 490 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 549
           D+N+ D E+   L  AA  G       L+  K ++   +I+  + LH+            
Sbjct: 136 DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN--RY--- 190

Query: 550 AEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
             +          ++  + + LKN   E+PL  A+   +  +  ++  
Sbjct: 191 --DCV-----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  136 bits (346), Expect = 7e-37
 Identities = 61/310 (19%), Positives = 109/310 (35%), Gaps = 83/310 (26%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
                 K +PLH AA     D+   L+  GA+++   +++R+PL+ AA            
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAE----------- 53

Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI 337
              NN  +AV     +         L++      +      G T LH+AA     E  + 
Sbjct: 54  ---NNHLEAV-----KY--------LIKAG--ALVDPKDAEGSTCLHLAAKKGHYEVVQY 95

Query: 338 LVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP 397
           L+           SNG   ++                                   G  P
Sbjct: 96  LL-----------SNGQMDVNCQDDG------------------------------GWTP 114

Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV- 456
           +  A        V+L L  G+ I+ +  + +  +H A   G +DI  +         L+ 
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI---------LLA 165

Query: 457 ---CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
               L++ +    +PLH AA  +R D V   +   +D+ + +KE  +PL  A+      +
Sbjct: 166 AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS 225

Query: 514 VLTLVRNKAN 523
            L + +   +
Sbjct: 226 ALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  122 bits (309), Expect = 7e-32
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 16/166 (9%)

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
                 K +PLH AA     D+   L+  GA+++   +++R+PL+ AA     + V  L+
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC-INLKNNSNE 577
           +  A +  KD      LHL      GH      EV      + L++ G   +N +++   
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKK--GHY-----EVV-----QYLLSNGQMDVNCQDDGGW 112

Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           +P+  A  Y   + VK LLS  +GS  IN  D E    LH A+  G
Sbjct: 113 TPMIWATEYKHVDLVKLLLS--KGS-DINIRDNEENICLHWAAFSG 155

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  117 bits (297), Expect = 3e-30
 Identities = 58/250 (23%), Positives = 102/250 (40%), Gaps = 34/250 (13%)

Query: 23  VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
           +N ++ +  K++ LH A E   V I  +L+Q     +I    E  RT L  AA  +  E 
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEA 59

Query: 83  ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 142
            + L+              GA +    + G   +H AAK    + ++  L  G+      
Sbjct: 60  VKYLIKA------------GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM----- 102

Query: 143 EEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 202
              ++  D  G  P+  A        V+L L  G+ I+ +  + +  +H A   G +DI 
Sbjct: 103 --DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160

Query: 203 RLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
            +         L+     L++ +    +PLH AA  +R D V   +   +D+ + +KE  
Sbjct: 161 EI---------LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE 211

Query: 259 SPLLLAASRG 268
           +PL  A+   
Sbjct: 212 TPLQCASLNS 221

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 98.3 bits (246), Expect = 3e-23
 Identities = 46/239 (19%), Positives = 84/239 (35%), Gaps = 38/239 (15%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L+   +G N    +  ++  L  A E N +  +  L++      +      G T LH+AA
Sbjct: 30  LV--QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG--ALVDPKDAEGSTCLHLAA 85

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQF 134
                E  + L+S             G        + G+ P+  A +      +++ L  
Sbjct: 86  KKGHYEVVQYLLSN------------GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL-- 131

Query: 135 GESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 194
             S G      I++ D E N+ LH A   G     E+ L +   +        +P+H+A 
Sbjct: 132 --SKGSD----INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185

Query: 195 SQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 249
            +   D V L          +     +   + +  TPL CA++  +      +     D
Sbjct: 186 RENRYDCVVL---------FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.8 bits (141), Expect = 2e-09
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 569 INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
             +++ +  SPLH AA  G  +    L+    G+  I+    +  TPL  A++  
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQ--AGA-NIDTCSEDQRTPLMEAAENN 55

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  147 bits (373), Expect = 2e-40
 Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 29/237 (12%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
                +  A   G ++     +++G  +     +  T +H A     +D+V+        
Sbjct: 8   YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY------- 60

Query: 453 EKLVC----LNSTDAQK-MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
              +     ++        TPLH A       +V  L+  GAD +++D E  S + LAA 
Sbjct: 61  --YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118

Query: 508 RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGA 567
            G    V  L+    ++ + D N    L         H  +             L+    
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR--THSVDPTRL---------LLTFNV 167

Query: 568 CINLKNNSN-ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
            +NL +  +  + LH A   G    +  LL    G+  ++  + +G + L +A +  
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLE--AGAN-VDAQNIKGESALDLAKQRK 221

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  137 bits (349), Expect = 3e-37
 Identities = 62/290 (21%), Positives = 98/290 (33%), Gaps = 70/290 (24%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
           ++    +  A  Y   E  R LV+                          K         
Sbjct: 7   DYSTWDIVKATQYGIYERCRELVE-----------------AGYDVRQPDK--------- 40

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL-STPVHLAC 435
                           E    LH A        V+  +  GA +     DL STP+H A 
Sbjct: 41  ----------------ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT 84

Query: 436 SQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL 491
            QG L +V           L+      +  D +  + +H AA F    +V YLI +G D+
Sbjct: 85  RQGHLSMVVQ---------LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135

Query: 492 NVLDKEKRSPLLLAASRGGWK-TVLTLVRNKANILLKD-INRRNILHLLVLNGGGHIKEF 549
           +++D+   +PL+ AA R         L+    ++ L D  ++   LH  VL G  +    
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG--NT--- 190

Query: 550 AEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSE 599
              V        L+  GA ++ +N   ES L LA +      +  L  + 
Sbjct: 191 --TVI-----SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  130 bits (330), Expect = 1e-34
 Identities = 52/318 (16%), Positives = 93/318 (29%), Gaps = 85/318 (26%)

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVN 276
           +   D      +  A  +   +  + L++ G D+   DKE  + L  AA           
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINN-------- 53

Query: 277 TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECAR 336
                        +        ++   +    ++D   GG+   T LH A          
Sbjct: 54  ------------RID-------LVKYYISKGAIVDQ-LGGDLNSTPLHWATRQGHLSMVV 93

Query: 337 ILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNL 396
            L+K                 + A  +                             EG  
Sbjct: 94  QLMK-----------------YGADPSLIDG-------------------------EGCS 111

Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG-ALDIVRLMFNLQPSEKL 455
            +H A   G    V   +  G  +     +  TP+  A  +  ++D  RL         L
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL---------L 162

Query: 456 VC----LNSTD-AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 510
           +     +N  D   K T LH A +     V+  L++ GA+++  + +  S L LA  R  
Sbjct: 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222

Query: 511 WKTVLTLVRNKANILLKD 528
              +  L   +      +
Sbjct: 223 VWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  119 bits (300), Expect = 1e-30
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
           +   D      +  A  +   +  + L++ G D+   DKE  + L  AA       V   
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 518 VRNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
           +   A +     +  +  LH       GH+      +        L+  GA  +L +   
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQ--GHL-----SMV-----VQLMKYGADPSLIDGEG 109

Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
            S +HLAA++G  + V  L++  +G   ++  D  G+TPL  A+        
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIA--KGQ-DVDMMDQNGMTPLMWAAYRTHSVDP 158

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  117 bits (297), Expect = 4e-30
 Identities = 55/275 (20%), Positives = 98/275 (35%), Gaps = 50/275 (18%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
              + I  A +    +     +      G    +     D E    LH A        V+
Sbjct: 8   YSTWDIVKATQYGIYERCRELV----EAGYDVRQP----DKENVTLLHWAAINNRIDLVK 59

Query: 171 LCLKSGAKISTQQFDL-STPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKM 225
             +  GA +     DL STP+H A  QG L +V           L+      +  D +  
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ---------LMKYGADPSLIDGEGC 110

Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
           + +H AA F    +V YLI +G D++++D+   +PL+ AA R                  
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT----------------- 153

Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
                    + V    +LL +   +++     H  TALH A +        +L+ + GA+
Sbjct: 154 ---------HSVDPTRLLLTFNVSVNL-GDKYHKNTALHWAVLAGNTTVISLLL-EAGAN 202

Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 380
           +      G   +  A +  +   +    +  ++ G
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  114 bits (288), Expect = 5e-29
 Identities = 49/253 (19%), Positives = 91/253 (35%), Gaps = 40/253 (15%)

Query: 23  VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
           +     ++     +  AT+         L++     D+ Q  +   T LH AAI +  + 
Sbjct: 2   MTHI--DDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDL 57

Query: 83  ARILVSEQPECDWIMVKDFGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQFGESIGCS 141
            +  +S+            GA + +   +    P+H A +      +   +++G      
Sbjct: 58  VKYYISK------------GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG-ALD 200
                   D EG   +H A   G    V   +  G  +     +  TP+  A  +  ++D
Sbjct: 106 --------DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157

Query: 201 IVRLMFNLQPSEKLVC----LNSTD-AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 255
             RL         L+     +N  D   K T LH A +     V+  L++ GA+++  + 
Sbjct: 158 PTRL---------LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208

Query: 256 EKRSPLLLAASRG 268
           +  S L LA  R 
Sbjct: 209 KGESALDLAKQRK 221

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  114 bits (287), Expect = 7e-29
 Identities = 47/351 (13%), Positives = 96/351 (27%), Gaps = 127/351 (36%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           D      +  A   G ++     +++G  +                              
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVEAGYDV------------------------------ 35

Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK-RSPLLLAASRG 268
                      D + +T LH AA+ +R D+V+Y I +GA ++ L  +   +PL  A  +G
Sbjct: 36  --------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87

Query: 269 GWKTNGVNTRILNNKKQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 327
                               HL+            L++Y    D       G + +H+AA
Sbjct: 88  --------------------HLSMVVQ--------LMKYG--ADPSLIDGEGCSCIHLAA 117

Query: 328 IYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 387
            +        L+                       +   +                    
Sbjct: 118 QFGHTSIVAYLIA-----------------KGQDVDMMDQ-------------------- 140

Query: 388 SLFAAEGNLPLHSAVHGGDFK-AVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRL 445
                 G  PL  A +         L L     ++   ++  +T +H A   G   ++ L
Sbjct: 141 -----NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195

Query: 446 MFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 492
                    L+     +++ + +  + L  A       ++ +L +      
Sbjct: 196 ---------LLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.4 bits (101), Expect = 2e-04
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 16/125 (12%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATE-LNKVPILLILLQYKDMIDILQGGEHGRTALHIA 74
           LI  + G +  +++      L  A    + V    +LL +   +++     H  TALH A
Sbjct: 128 LI--AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKNTALHWA 184

Query: 75  AIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 134
            +        +L+              GA++      G   +  A +  +   +    + 
Sbjct: 185 VLAGNTTVISLLLEA------------GANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

Query: 135 GESIG 139
            ++ G
Sbjct: 233 RQAKG 237

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  144 bits (366), Expect = 8e-40
 Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 27/235 (11%)

Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           G + +  A++  + +  +        I        T      S+G   ++          
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI---------- 61

Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
               +         PLH AA       ++  +D    +N LDK   + L  A   G    
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 514 VLTLVRNK-ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLK 572
           V  L       +  ++      LH     G  +      ++      + L+  GA  +L+
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKG--YA-----DIV-----QLLLAKGARTDLR 169

Query: 573 NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG-FHY 626
           N   +    +A      + +KK   ++    +   S+ E       +  E   H+
Sbjct: 170 NIEKKLAFDMATNAACASLLKKKQGTDA---VRTLSNAEDYLDDEDSDLEHHHHH 221

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  124 bits (313), Expect = 1e-32
 Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 18/229 (7%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
           + G+  +  A           L  +    +                   +  +       
Sbjct: 10  KPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
           ++                + PLH A   G+   +  CL +   ++      ST ++ AC 
Sbjct: 69  QAE-------------SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115

Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
            G  DIV ++F    ++  + LN  +    T LH AA     D+VQ L+ +GA  ++ + 
Sbjct: 116 GGHKDIVEMLF----TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171

Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
           EK+    +A +      +       A   L +           L    H
Sbjct: 172 EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  113 bits (286), Expect = 6e-29
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 29/204 (14%)

Query: 65  EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
           + G+  +  A           L  E               +                   
Sbjct: 10  KPGQVKVFRALYTFEPRTPDELYIE------------EGDIIYITDMSDTNWWKGTSKGR 57

Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
           +  +       +                 + PLH A   G+   +  CL +   ++    
Sbjct: 58  TGLIPSNYVAEQ-------------AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104

Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
             ST ++ AC  G  DIV ++F    ++  + LN  +    T LH AA     D+VQ L+
Sbjct: 105 AGSTALYWACHGGHKDIVEMLF----TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160

Query: 245 DEGADLNVLDKEKRSPLLLAASRG 268
            +GA  ++ + EK+    +A +  
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAA 184

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  113 bits (284), Expect = 1e-28
 Identities = 28/226 (12%), Positives = 56/226 (24%), Gaps = 11/226 (4%)

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK-TNGV 275
                      +  A           L  E  D+  +     +      S+G        
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 276 NTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECA 335
                       LH A +   +  L   L  +  + +    + G TAL+ A      +  
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIV 122

Query: 336 RILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN 395
            +L       L +    G   +H AA    +  +++ L  G                E  
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI--------EKK 174

Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALD 441
           L    A +      ++    + A  +    +       +  +    
Sbjct: 175 LAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  111 bits (279), Expect = 5e-28
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 19/166 (11%)

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
                      +  A           L  E  D+  +     +      S+G      T 
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTG 59

Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
           +     +  +  +  N LH       G++                ++    +N  + +  
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKR--GNL-----SWL-----RECLDNRVGVNGLDKAGS 107

Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           + L+ A   G  + V+ L  ++     +N+ +  G T LH A+ +G
Sbjct: 108 TALYWACHGGHKDIVEMLF-TQPNI-ELNQQNKLGDTALHAAAWKG 151

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 22/181 (12%), Positives = 48/181 (26%), Gaps = 21/181 (11%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
                           LH A +   +  L   L  +  + +    + G TAL+ A     
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGH 118

Query: 80  DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
            +   +L ++               L +    G   +H AA    +  +++ L  G    
Sbjct: 119 KDIVEMLFTQP-----------NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
                     + E  L    A +      ++    + A  +    +       +  +   
Sbjct: 168 LR--------NIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

Query: 200 D 200
            
Sbjct: 220 H 220

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  144 bits (366), Expect = 1e-39
 Identities = 59/282 (20%), Positives = 100/282 (35%), Gaps = 52/282 (18%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
           E G T LHIA +         LV               +       +  +          
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVN-------------LFQQGGRELDIYNN--------- 44

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
                               PLH AV       V L + +GA          T  HLAC 
Sbjct: 45  ----------------LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88

Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD- 495
             +   +R + +   +   + L + +   +T LH A   +  + VQ L++ GAD++ +D 
Sbjct: 89  HRSPTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDI 147

Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA 555
           K  RSPL+ A        V  L+++ AN+  +  +  + LH     G   +      +  
Sbjct: 148 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG--LL-----PLV- 199

Query: 556 VFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
                 L+  GA  +LKN  N++PL +A      + ++   +
Sbjct: 200 ----RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  140 bits (356), Expect = 3e-38
 Identities = 59/244 (24%), Positives = 93/244 (38%), Gaps = 37/244 (15%)

Query: 393 EGNLPLHSAVHGGDFKAVEL----CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 448
           +G+ PLH AV  G+  AV        + G ++        TP+HLA       +VRL   
Sbjct: 8   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL--- 64

Query: 449 LQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA----DLNVLDKEKRS 500
                 LV       + D    T  H A        ++ L+D  A    DL   + +  +
Sbjct: 65  ------LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118

Query: 501 PLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHIKEFAEEVAAVFLG 559
            L +A +    +TV  L+   A+I   DI   R+ L   V N    +      +      
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN--SL-----SMV----- 166

Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
           + L+  GA +N +  S  S LH A+  G    V+ L+    G+   +  +    TPL +A
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR--SGAD-SSLKNCHNDTPLMVA 223

Query: 620 SKEG 623
               
Sbjct: 224 RSRR 227

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  132 bits (336), Expect = 2e-35
 Identities = 60/316 (18%), Positives = 104/316 (32%), Gaps = 85/316 (26%)

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDE----GADLNVLDKEKRSPLLLAASRGGWKT 272
               D    TPLH A +      V  L++     G +L++ +  +++PL LA        
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI------ 55

Query: 273 NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD 332
                         V      L        L+        +    HG+TA H+A  +   
Sbjct: 56  --------TTLPSVV-----RL--------LVTAG--ASPMALDRHGQTAAHLACEHRSP 92

Query: 333 ECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAA 392
            C R L+            +      D    A +                          
Sbjct: 93  TCLRALL-----------DSAAPGTLD--LEARNY------------------------- 114

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF-DLSTPVHLACSQGALDIVRLMFNLQP 451
           +G   LH AV+    + V+L L+ GA I         +P+  A    +L +V+L      
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL------ 168

Query: 452 SEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
              L+     +N+      + LH A+      +V+ L+  GAD ++ +    +PL++A S
Sbjct: 169 ---LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225

Query: 508 RGGWKTVLTLVRNKAN 523
           R     +       A+
Sbjct: 226 RRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  126 bits (320), Expect = 3e-33
 Identities = 63/306 (20%), Positives = 101/306 (33%), Gaps = 80/306 (26%)

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
           TP+H+A  QG L  V  + NL        L+  +  + TPLH A +     VV+ L+  G
Sbjct: 11  TPLHIAVVQGNLPAVHRLVNLFQQGG-RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 248 ADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYK 307
           A    LD+  ++   LA                +     +             L+     
Sbjct: 70  ASPMALDRHGQTAAHLACE--------------HRSPTCL-----R------ALLDSAAP 104

Query: 308 DMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSK 367
             +D+      G TALH+A   +  E  ++L++                   A  +A   
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLE-----------------RGADIDAVDI 147

Query: 368 TMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 427
                                     G  PL  AV       V+L L+ GA ++ Q +  
Sbjct: 148 K------------------------SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183

Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQY 483
           S+ +H A  +G L +VR          LV      +  +    TPL  A      D+++ 
Sbjct: 184 SSALHSASGRGLLPLVRT---------LVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234

Query: 484 LIDEGA 489
                A
Sbjct: 235 KATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  122 bits (308), Expect = 1e-31
 Identities = 57/288 (19%), Positives = 91/288 (31%), Gaps = 60/288 (20%)

Query: 65  EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
           E G T LHIA +         LV+                         +       +  
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVN------------------------LFQQGGRELDIY 42

Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
                                    +     PLH AV       V L + +GA       
Sbjct: 43  -------------------------NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR 77

Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
              T  HLAC   +   +R + +   +   + L + +   +T LH A   +  + VQ L+
Sbjct: 78  HGQTAAHLACEHRSPTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL 136

Query: 245 DEGADLNVLD-KEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKV 297
           + GAD++ +D K  RSPL+ A              +G N         + LH A+    +
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL 196

Query: 298 PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
           P++  L++     D      H  T L +A      +  R       AS
Sbjct: 197 PLVRTLVRSG--ADSSLKNCHNDTPLMVARSRRVIDILRGKA-TRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  121 bits (307), Expect = 2e-31
 Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 32/247 (12%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDM--IDILQGGEHGRTALHIAAIYDFDECARIL 86
           +      LH+A     +P +  L+        ++       +T LH+A I       R+L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 87  VSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 146
           V+             GAS      +G    H A ++ S   +   L             +
Sbjct: 66  VTA------------GASPMALDRHGQTAAHLACEHRSPTCLRALL----DSAAPGTLDL 109

Query: 147 SLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF-DLSTPVHLACSQGALDIVRLM 205
              + +G   LH AV+    + V+L L+ GA I         +P+  A    +L +V+L 
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL- 168

Query: 206 FNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
                   L+     +N+      + LH A+      +V+ L+  GAD ++ +    +PL
Sbjct: 169 --------LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220

Query: 262 LLAASRG 268
           ++A SR 
Sbjct: 221 MVARSRR 227

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  113 bits (285), Expect = 1e-28
 Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 24/175 (13%)

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDE----GADLNVLDKEKRSPLLLAASRGGWKT 513
               D    TPLH A +      V  L++     G +L++ +  +++PL LA        
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 514 VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC----I 569
           V  LV   A+ +  D + +   HL   +                    L++  A     +
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEH--RSP-----TCL-----RALLDSAAPGTLDL 109

Query: 570 NLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGE-GLTPLHIASKEG 623
             +N    + LH+A       TV+ LL   RG+  I+  D + G +PL  A +  
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLE--RGA-DIDAVDIKSGRSPLIHAVENN 161

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.4 bits (210), Expect = 2e-18
 Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 25/192 (13%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQY--KDMIDILQGGEHGRTALHI 73
           L+  ++G +   L+   Q   HLA E      L  LL       +D+      G TALH+
Sbjct: 65  LV--TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122

Query: 74  AAIYDFDECARILVSEQPECDWIMVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFL 132
           A   +  E  ++L+              GA +      +G  P+  A +N S   +++ L
Sbjct: 123 AVNTECQETVQLLLER------------GADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 170

Query: 133 QFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHL 192
           Q G ++              G+  LHSA   G    V   ++SGA  S +     TP+ +
Sbjct: 171 QHGANVNAQ--------MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222

Query: 193 ACSQGALDIVRL 204
           A S+  +DI+R 
Sbjct: 223 ARSRRVIDILRG 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.4 bits (114), Expect = 4e-06
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 15/113 (13%)

Query: 23  VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
           ++   + + +   L  A E N + ++ +LLQ+    ++      G +ALH A+       
Sbjct: 142 IDAVDIKSGRSP-LIHAVENNSLSMVQLLLQHG--ANVNAQMYSGSSALHSASGRGLLPL 198

Query: 83  ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
            R LV              GA       +   P+  A        +       
Sbjct: 199 VRTLVRS------------GADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  144 bits (366), Expect = 2e-39
 Identities = 56/289 (19%), Positives = 104/289 (35%), Gaps = 44/289 (15%)

Query: 310 IDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTM 369
           +D+   G  G T L IA+                         G    +   +  +   +
Sbjct: 1   MDVNVRGPDGFTPLMIASCSG---------------------GGLETGNSEEEEDAPAVI 39

Query: 370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 429
             F+  G S+    +         G   LH A       A +  L++ A  + Q     T
Sbjct: 40  SDFIYQGASLHNQTDR-------TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 92

Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
           P+H A S  A  + +++       +   L++      TPL  AA      +++ LI+  A
Sbjct: 93  PLHAAVSADAQGVFQILI----RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148

Query: 490 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 549
           D+N +D   +S L  AA+       + L++N AN  +++      L L      G     
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE--GSY--- 203

Query: 550 AEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
             E A     + L++  A  ++ ++ +  P  +A     ++ V+ L   
Sbjct: 204 --ETA-----KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  128 bits (325), Expect = 9e-34
 Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 25/205 (12%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCL---------NSTDAQKMTPLHCAAMFDRCD 479
           TP+ +A   G           + +  ++           N TD    T LH AA + R D
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71

Query: 480 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLL 538
             + L++  AD N+ D   R+PL  A S         L+RN+A ++  +  +    L L 
Sbjct: 72  AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131

Query: 539 VLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
                  ++   E+         LIN  A +N  ++  +S LH AA     +    LL  
Sbjct: 132 ARLA---VEGMLED---------LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK- 178

Query: 599 ERGSFIINESDGEGLTPLHIASKEG 623
             G+   +  +    TPL +A++EG
Sbjct: 179 -NGANK-DMQNNREETPLFLAAREG 201

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  123 bits (312), Expect = 5e-32
 Identities = 58/325 (17%), Positives = 93/325 (28%), Gaps = 97/325 (29%)

Query: 218 NSTDAQKMTPLHCAAMF-------------DRCDVVQYLIDEGADL-NVLDKEKRSPLLL 263
           N       TPL  A+               D   V+   I +GA L N  D+   + L L
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 264 AASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTAL 323
           AA                ++  A      +         LL+     D       GRT L
Sbjct: 64  AA--------------RYSRSDAA-----KR--------LLEAS--ADANIQDNMGRTPL 94

Query: 324 HIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 383
           H A   D     +IL+            N    +   A+     T               
Sbjct: 95  HAAVSADAQGVFQILI-----------RNRATDLD--ARMHDGTT--------------- 126

Query: 384 EEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIV 443
                        PL  A        +E  + S A ++       + +H A +   +D  
Sbjct: 127 -------------PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 173

Query: 444 RLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
            +         L+      +  + ++ TPL  AA     +  + L+D  A+ ++ D   R
Sbjct: 174 VV---------LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224

Query: 500 SPLLLAASRGGWKTVLTLVRNKANI 524
            P  +A  R     V  L     + 
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  122 bits (310), Expect = 9e-32
 Identities = 57/288 (19%), Positives = 95/288 (32%), Gaps = 51/288 (17%)

Query: 58  IDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIH 117
           +D+   G  G T L IA+                                    G    +
Sbjct: 1   MDVNVRGPDGFTPLMIASCS--------------------------------GGGLETGN 28

Query: 118 DAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
              +  +   +  F+  G S+           D  G   LH A       A +  L++ A
Sbjct: 29  SEEEEDAPAVISDFIYQGASLHNQT-------DRTGETALHLAARYSRSDAAKRLLEASA 81

Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
             + Q     TP+H A S  A  + +++       +   L++      TPL  AA     
Sbjct: 82  DANIQDNMGRTPLHAAVSADAQGVFQILI----RNRATDLDARMHDGTTPLILAARLAVE 137

Query: 238 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLA 291
            +++ LI+  AD+N +D   +S L  AA+            NG N  + NN+++  L LA
Sbjct: 138 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197

Query: 292 TELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
                     +LL +    +        R    IA      +  R+L 
Sbjct: 198 AREGSYETAKVLLDHF--ANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  117 bits (295), Expect = 8e-30
 Identities = 60/322 (18%), Positives = 95/322 (29%), Gaps = 100/322 (31%)

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCL---------NSTDAQKMTPLHCAAMFDRCD 238
           TP+ +A   G           + +  ++           N TD    T LH AA + R D
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71

Query: 239 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAV----LHLATEL 294
             + L++  AD N+ D   R+PL  A S               + +        + AT+L
Sbjct: 72  AAKRLLEASADANIQDNMGRTPLHAAVS--------------ADAQGVFQILIRNRATDL 117

Query: 295 NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY 354
           +           +           G T L +AA    +     L+               
Sbjct: 118 DA----------RM--------HDGTTPLILAARLAVEGMLEDLIN-------------- 145

Query: 355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCL 414
                A  NA                             G   LH A    +  A  + L
Sbjct: 146 ---SHADVNAVDD-------------------------LGKSALHWAAAVNNVDAAVVLL 177

Query: 415 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLH 470
           K+GA    Q     TP+ LA  +G+ +  ++         L+      + TD     P  
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKV---------LLDHFANRDITDHMDRLPRD 228

Query: 471 CAAMFDRCDVVQYLIDEGADLN 492
            A      D+V+ L  E    +
Sbjct: 229 IAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 96.8 bits (242), Expect = 1e-22
 Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 36/228 (15%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
           +   +  LHLA   ++      LL+     D       GRT LH A   D     +IL+ 
Sbjct: 54  DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIR 111

Query: 89  EQPECDWIMVKDFGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 147
                         A+   A  + G  P+  AA+ A    +E  +     +         
Sbjct: 112 N------------RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV------ 153

Query: 148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
             D  G   LH A    +  A  + LK+GA    Q     TP+ LA  +G+ +  ++   
Sbjct: 154 --DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV--- 208

Query: 208 LQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
                 L+      + TD     P   A      D+V+ L  E    +
Sbjct: 209 ------LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.3 bits (150), Expect = 1e-10
 Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 24/161 (14%)

Query: 23  VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
           ++ R   +     L LA  L    +L  L+      D+    + G++ALH AA  +  + 
Sbjct: 117 LDAR--MHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDLGKSALHWAAAVNNVDA 172

Query: 83  ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 142
           A +L+              GA+     +    P+  AA+  S +T +V L        +R
Sbjct: 173 AVVLLKN------------GANKDMQNNREETPLFLAAREGSYETAKVLL----DHFANR 216

Query: 143 EEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
           +      D    LP   A        V L            
Sbjct: 217 DIT----DHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.9 bits (123), Expect = 4e-07
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 15/68 (22%)

Query: 569 INLKNNSNESPLHLAARYGRYNT-------------VKKLLSSERGSFIINESDGEGLTP 615
           +N++     +PL +A+  G                 +   +   +G+ + N++D  G T 
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY--QGASLHNQTDRTGETA 60

Query: 616 LHIASKEG 623
           LH+A++  
Sbjct: 61  LHLAARYS 68

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 46.7 bits (112), Expect = 7e-06
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 16/114 (14%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           LI  +S  +   +++  ++ LH A  +N V   ++LL+     +         T L +AA
Sbjct: 143 LI--NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG--ANKDMQNNREETPLFLAA 198

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTME 129
                E A++L+               A+          P   A +      + 
Sbjct: 199 REGSYETAKVLLDH------------FANRDITDHMDRLPRDIAQERMHHDIVR 240

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  136 bits (344), Expect = 1e-36
 Identities = 53/240 (22%), Positives = 89/240 (37%), Gaps = 34/240 (14%)

Query: 394 GNLPLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
            N PLH A    +F  V+  L S  + +  +  D   P+H + S  A +I          
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF------- 54

Query: 453 EKLV-------CLNSTDAQKMTPLHCAAMFDRCDVVQYLID--EGADLNVLDKEKRSPLL 503
             L+         +  D    TP H A      +VV+ L D     DLN +  +  + L 
Sbjct: 55  --LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112

Query: 504 LAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLI 563
           LA  +  ++    L+ N A++ +KD   +  LH     G   +     ++      E L 
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG--SL-----KLI-----ELLC 160

Query: 564 NLG-ACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE 622
            LG + +N ++    +PL  A   G  +    L+         +  D +G     +A  E
Sbjct: 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  129 bits (327), Expect = 2e-34
 Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 23/201 (11%)

Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
           + P+H AC +     V+ + + +PS         D     PLH +  F   ++  +L+ +
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLL----LQKDQDGRIPLHWSVSFQAHEITSFLLSK 58

Query: 488 GADLNV---LDKEKRSPLLLAASRGGWKTVLTLVRN--KANILLKDINRRNILHLLVLNG 542
             ++N+    D    +P  +A S G  + V +L     K ++          LHL V   
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118

Query: 543 GGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGS 602
                    EV+     + LI  GA + +K+  N+ PLH AA  G    ++ L     G 
Sbjct: 119 --WF-----EVS-----QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG--LGK 164

Query: 603 FIINESDGEGLTPLHIASKEG 623
             +N  D +G TPL  A  EG
Sbjct: 165 SAVNWQDKQGWTPLFHALAEG 185

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  117 bits (295), Expect = 6e-30
 Identities = 51/286 (17%), Positives = 90/286 (31%), Gaps = 74/286 (25%)

Query: 225 MTPLHCAAMFDRCD-VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNK 283
             PLH A M +    V + L  + + L   D++ R PL  + S                 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS--------------FQA 48

Query: 284 KQAVLHLATELNKVPILLILLQYKDMIDIL-QGGEHGRTALHIAAIYDFDECARILVKDF 342
            +                 LL   + +++     + G T  HIA      E  + L    
Sbjct: 49  HEIT-----SF--------LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY--- 92

Query: 343 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAV 402
                               N  +                          +G   LH AV
Sbjct: 93  --------DRPL----KPDLNKITN-------------------------QGVTCLHLAV 115

Query: 403 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD 462
               F+  +  +++GA +  +      P+H A S G+L ++ L+           +N  D
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GLGKSAVNWQD 171

Query: 463 AQKMTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAAS 507
            Q  TPL  A      D    L+++ GA+ +++D +      +A +
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  115 bits (290), Expect = 2e-29
 Identities = 52/231 (22%), Positives = 84/231 (36%), Gaps = 26/231 (11%)

Query: 153 GNLPLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
            N PLH A    +F  V+  L S  + +  +  D   P+H + S  A +I          
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF------- 54

Query: 212 EKLV-------CLNSTDAQKMTPLHCAAMFDRCDVVQYLID--EGADLNVLDKEKRSPLL 262
             L+         +  D    TP H A      +VV+ L D     DLN +  +  + L 
Sbjct: 55  --LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112

Query: 263 LAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGG 316
           LA  +  ++       NG + RI +   Q  LH A  +  + ++ +L        +    
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQD 171

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSK 367
           + G T L  A      + A +LV+ +GA      + G      A      K
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  106 bits (268), Expect = 2e-26
 Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 21/232 (9%)

Query: 36  LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
           LH A   N+   +  LL  K    +LQ  + GR  LH +  +   E    L+S+    + 
Sbjct: 6   LHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 96  IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNL 155
               D          +G+ P H A    + + ++                ++    +G  
Sbjct: 65  DDYPD---------DSGWTPFHIACSVGNLEVVKSLYDRPLKPD------LNKITNQGVT 109

Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
            LH AV    F+  +  +++GA +  +      P+H A S G+L ++ L+          
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GLGKS 165

Query: 216 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAAS 266
            +N  D Q  TPL  A      D    L+++ GA+ +++D +      +A +
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.2 bits (173), Expect = 8e-14
 Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 61/218 (27%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
           ++      H+A  +  + ++  L       D+ +    G T LH+A    + E ++ L+ 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

Query: 89  EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
                                       + A+                            
Sbjct: 129 ----------------------------NGASVRIK------------------------ 136

Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSG-AKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
            D    +PLH A   G  K +EL    G + ++ Q     TP+  A ++G  D   L+  
Sbjct: 137 -DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV- 194

Query: 208 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 245
               +     +  D +       A       V ++ ++
Sbjct: 195 ---EKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 20/147 (13%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L       +   + N+    LHLA       +   L++      +    +  +  LH AA
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG--ASVRIKDKFNQIPLHRAA 148

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
                +   +L     +   +  +D           G+ P+  A          + +   
Sbjct: 149 SVGSLKLIELLCG-LGKSA-VNWQD---------KQGWTPLFHALAEGHGDAAVLLV--- 194

Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVH 162
           E  G   + +    D +G      A++
Sbjct: 195 EKYGAEYDLV----DNKGAKAEDVALN 217

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.1 bits (113), Expect = 6e-06
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 14/111 (12%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           LI   +G + RI +   Q  LH A  +  + ++ +L        +    + G T L  A 
Sbjct: 126 LI--ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG-LGKSAVNWQDKQGWTPLFHAL 182

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
                + A +LV +            GA      + G      A      K
Sbjct: 183 AEGHGDAAVLLVEKY-----------GAEYDLVDNKGAKAEDVALNEQVKK 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  132 bits (334), Expect = 2e-35
 Identities = 51/269 (18%), Positives = 98/269 (36%), Gaps = 45/269 (16%)

Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
           +   + A      ++ + ++ + +     D++ R+ L  A S                  
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACS--------------AGHT 53

Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
           + V     E         LLQ    + +    + G + LHIAA    DE  + L+   GA
Sbjct: 54  EIV-----EF--------LLQLG--VPVNDKDDAGWSPLHIAASAGXDEIVKALLVK-GA 97

Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
            +     NG  P+H AA     +   + L+ G +                   +H A   
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH--------YDATAMHRAAAK 149

Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 464
           G+ K V + L   A  + Q  + +TP+HLAC +  ++  + +     S     +   + +
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-----IYIENKE 204

Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
           + TPL  A       ++   + EG + ++
Sbjct: 205 EKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  115 bits (289), Expect = 2e-29
 Identities = 55/285 (19%), Positives = 103/285 (36%), Gaps = 61/285 (21%)

Query: 313 LQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF 372
           ++G        ++A     DE    ++                    +    + +     
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERILA-----------------DKSLATRTDQ----- 38

Query: 373 LQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH 432
                               +    LH A   G  + VE  L+ G  ++ +     +P+H
Sbjct: 39  --------------------DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78

Query: 433 LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 492
           +A S G  +IV+ +           +N+ +    TPLH AA  +R ++   L++ GA+ +
Sbjct: 79  IAASAGXDEIVKALLVKGAH-----VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 493 VLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEE 552
             D    + +  AA++G  K V  L+  KA+  ++D      LHL          +F   
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF--- 190

Query: 553 VAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
                    L+  GA I ++N   ++PL +A   G    + K L+
Sbjct: 191 ---------LVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLA 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  114 bits (286), Expect = 6e-29
 Identities = 55/228 (24%), Positives = 89/228 (39%), Gaps = 28/228 (12%)

Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
             + A  G   +  E  L   +  +    D  T +H ACS G  +IV           L+
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF---------LL 60

Query: 457 C----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
                +N  D    +PLH AA     ++V+ L+ +GA +N +++   +PL  AAS+   +
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120

Query: 513 TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLK 572
             + L+   AN   KD      +H     G   +               L+   A  N++
Sbjct: 121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI------------LLFYKASTNIQ 168

Query: 573 NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIAS 620
           +    +PLHLA    R    K L++       I   + E  TPL +A 
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  110 bits (277), Expect = 1e-27
 Identities = 48/248 (19%), Positives = 90/248 (36%), Gaps = 31/248 (12%)

Query: 61  LQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAA 120
           ++G        ++A     DE    ++++             +   R   +    +H A 
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERILAD------------KSLATRTDQDSRTALHWAC 48

Query: 121 KNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIS 180
               ++ +E  LQ G  +           D  G  PLH A   G  + V+  L  GA ++
Sbjct: 49  SAGHTEIVEFLLQLGVPVNDK--------DDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100

Query: 181 TQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVV 240
               +  TP+H A S+   +I  ++     +      ++ D    T +H AA      +V
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----PDAKDHYDATAMHRAAAKGNLKMV 155

Query: 241 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATEL 294
             L+   A  N+ D E  +PL LA      +        G +  I N +++  L +A   
Sbjct: 156 HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215

Query: 295 NKVPILLI 302
             + +  +
Sbjct: 216 LGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  108 bits (270), Expect = 1e-26
 Identities = 48/233 (20%), Positives = 87/233 (37%), Gaps = 29/233 (12%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
           +        +   +  LH A       I+  LLQ    + +    + G + LHIAA    
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGX 85

Query: 80  DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
           DE  + L+ +            GA +     NG  P+H AA     +   + L+ G +  
Sbjct: 86  DEIVKALLVK------------GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
                     D      +H A   G+ K V + L   A  + Q  + +TP+HLAC +  +
Sbjct: 134 AK--------DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV 185

Query: 200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
           +  + +     S     +   + ++ TPL  A       ++   + EG + ++
Sbjct: 186 EEAKFLVTQGAS-----IYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  107 bits (269), Expect = 1e-26
 Identities = 51/239 (21%), Positives = 92/239 (38%), Gaps = 27/239 (11%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
                 + +LA       +   +L  K      +  +  RTALH A      E    L+ 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADK--SLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61

Query: 89  EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
                        G  +      G+ P+H AA     + ++  L  G  +          
Sbjct: 62  L------------GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV------- 102

Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 208
            +  G  PLH A      +   + L+ GA    +    +T +H A ++G L +V ++   
Sbjct: 103 -NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

Query: 209 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
           + S      N  D +  TPLH A   +R +  ++L+ +GA + + +KE+++PL +A   
Sbjct: 162 KAS-----TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  107 bits (268), Expect = 2e-26
 Identities = 49/207 (23%), Positives = 75/207 (36%), Gaps = 28/207 (13%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYL 484
              +LA S    ++            ++        TD    T LH A      ++V++L
Sbjct: 9   MICNLAYSGKLDELKER---------ILADKSLATRTDQDSRTALHWACSAGHTEIVEFL 59

Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 544
           +  G  +N  D    SPL +AAS G  + V  L+   A++   + N    LH        
Sbjct: 60  LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI 604
            I               L+  GA  + K++ + + +H AA  G    V  LL  +     
Sbjct: 120 EIAVM------------LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS--- 164

Query: 605 INESDGEGLTPLHIASKEGFHYSVSIF 631
            N  D EG TPLH+A  E         
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 96.9 bits (241), Expect = 7e-23
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 15/166 (9%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
           +   + A      ++ + ++ + +     D++ R+ L  A S G  + V  L++    + 
Sbjct: 8   IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
            KD    + LH+    G   I +             L+  GA +N  N +  +PLH AA 
Sbjct: 68  DKDDAGWSPLHIAASAGXDEIVKA------------LLVKGAHVNAVNQNGCTPLHYAAS 115

Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
             R+     LL         +  D    T +H A+ +G    V I 
Sbjct: 116 KNRHEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 572 KNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
              SN    +LA         +++L+    S +   +D +  T LH A   G
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILA--DKS-LATRTDQDSRTALHWACSAG 51

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  132 bits (334), Expect = 1e-34
 Identities = 46/338 (13%), Positives = 91/338 (26%), Gaps = 77/338 (22%)

Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
             +  + T  +K     +        D  +   HG +A + A   +       L+ + GA
Sbjct: 2   MDLSRINTWKSKQLKSFLSS-----KDTFKADVHGHSASYYAIADNNVRLVCTLL-NAGA 55

Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
                     +P+H AA    +K +++ L  G       ++        GN  L+ AV  
Sbjct: 56  LKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK--------GNTALYYAVDS 105

Query: 405 GDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 463
           G+ + V+L +K   ++    +    T  + A     + IV    +  PS          A
Sbjct: 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS------TFDLA 159

Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
             ++ +H        D++  L+D     N  +     P +  A                 
Sbjct: 160 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK------------- 206

Query: 524 ILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLA 583
                        +              E+      + L      I        S     
Sbjct: 207 ------------DI--------------EML-----QALFKYDINIY-------SANLEN 228

Query: 584 ARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
                    K ++   +               +   +K
Sbjct: 229 VLLDDAEIAKMIIE--KHV-EYKSDSYTKDLDIVKNNK 263

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  128 bits (325), Expect = 2e-33
 Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 26/226 (11%)

Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
           S ++    K ++    S            +  + A +   + +V  + N          N
Sbjct: 5   SRINTWKSKQLKS-FLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLN-----AGALKN 58

Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
             +     PLH AA  +   +V+ L+  G D +  D +  + L  A   G  +TV   V+
Sbjct: 59  LLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 520 NKANILLKDIN-RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
               ++       +   +  V+     +      +         ++             S
Sbjct: 117 KNWRLMFYGKTGWKTSFYHAVML--NDV-----SIV-----SYFLSEIP-STFDLAILLS 163

Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTP-LHIASKEG 623
            +H+  + G  + +  LL     +   N ++     P + +A    
Sbjct: 164 CIHITIKNGHVDMMILLLD--YMTS-TNTNNSLLFIPDIKLAIDNK 206

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  127 bits (321), Expect = 6e-33
 Identities = 54/353 (15%), Positives = 107/353 (30%), Gaps = 71/353 (20%)

Query: 33  QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
             +  + T  +K     +        D  +   HG +A + A   +       L++    
Sbjct: 2   MDLSRINTWKSKQLKSFLSS-----KDTFKADVHGHSASYYAIADNNVRLVCTLLNA--- 53

Query: 93  CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAE 152
                    GA          +P+H AA    +K +++ L  G              D +
Sbjct: 54  ---------GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQF--------DDK 94

Query: 153 GNLPLHSAVHGGDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRLMFNLQPS 211
           GN  L+ AV  G+ + V+L +K   ++    +    T  + A     + IV    +  PS
Sbjct: 95  GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS 154

Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
                     A  ++ +H        D++  L+D     N  +     P +         
Sbjct: 155 ------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDI--------- 199

Query: 272 TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 331
                             LA +   + +L  L +Y           +  +A     + D 
Sbjct: 200 -----------------KLAIDNKDIEMLQALFKY---------DINIYSANLENVLLDD 233

Query: 332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE 384
            E A++++ +     K         I    K     +    L+    + C ++
Sbjct: 234 AEIAKMII-EKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLM-YVNCVKK 284

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  129 bits (326), Expect = 2e-34
 Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 16/205 (7%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
            G   LH A       A +  L++ A  + Q     TP+H A S  A  + +++      
Sbjct: 24  TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI----R 79

Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
            +   L++      TPL  AA      +++ LI+  AD+N +D   +S L  AA+     
Sbjct: 80  NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 139

Query: 513 TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLK 572
             + L++N AN  +++      L L      G       E A     + L++  A  ++ 
Sbjct: 140 AAVVLLKNGANKDMQNNREETPLFLAARE--GSY-----ETA-----KVLLDHFANRDIT 187

Query: 573 NNSNESPLHLAARYGRYNTVKKLLS 597
           ++ +  P  +A     ++ V+ L  
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  127 bits (323), Expect = 6e-34
 Identities = 58/225 (25%), Positives = 86/225 (38%), Gaps = 36/225 (16%)

Query: 410 VELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCL-------NST 461
           +   +  GA +  Q      T +HLA      D  +             L       N  
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR------------LLEASADANIQ 54

Query: 462 DAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
           D    TPLH A   D   V Q LI   A DL+    +  +PL+LAA       +  L+ +
Sbjct: 55  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114

Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
            A++   D   ++ LH        ++     + A       L+  GA  +++NN  E+PL
Sbjct: 115 HADVNAVDDLGKSALHWAAAVN--NV-----DAA-----VVLLKNGANKDMQNNREETPL 162

Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
            LAAR G Y T K LL     +   + +D     P  IA +   H
Sbjct: 163 FLAAREGSYETAKVLLD--HFANR-DITDHMDRLPRDIAQERMHH 204

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  112 bits (282), Expect = 3e-28
 Identities = 55/279 (19%), Positives = 85/279 (30%), Gaps = 83/279 (29%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
           N TD    T LH AA + R D  + L++  AD N+ D   R+PL                
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL---------------- 62

Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI 337
                      H A   +   +  IL++ +   D+      G T L +AA    +     
Sbjct: 63  -----------HAAVSADAQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEGMLED 110

Query: 338 LVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP 397
           L+                    A  NA                             G   
Sbjct: 111 LIN-----------------SHADVNAVDD-------------------------LGKSA 128

Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV- 456
           LH A    +  A  + LK+GA    Q     TP+ LA  +G+ +  ++         L+ 
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV---------LLD 179

Query: 457 ---CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 492
                + TD     P   A      D+V+ L +     +
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  111 bits (281), Expect = 4e-28
 Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 12/196 (6%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           D  G   LH A       A +  L++ A  + Q     TP+H A S  A  + +++    
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI--- 78

Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 269
              +   L++      TPL  AA      +++ LI+  AD+N +D   +S L  AA+   
Sbjct: 79  -RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137

Query: 270 WKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTAL 323
                    NG N  + NN+++  L LA          +LL +    +        R   
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF--ANRDITDHMDRLPR 195

Query: 324 HIAAIYDFDECARILV 339
            IA      +  R+L 
Sbjct: 196 DIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 95.9 bits (240), Expect = 1e-22
 Identities = 48/228 (21%), Positives = 77/228 (33%), Gaps = 36/228 (15%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
           +   +  LHLA   ++      LL+     D       GRT LH A   D     +IL+ 
Sbjct: 22  DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIR 79

Query: 89  EQPECDWIMVKDFGASLKRACSN-GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS 147
                         A+   A  + G  P+  AA+ A    +E  +     +         
Sbjct: 80  N------------RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV------ 121

Query: 148 LFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
             D  G   LH A    +  A  + LK+GA    Q     TP+ LA  +G+ +  ++   
Sbjct: 122 --DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV--- 176

Query: 208 LQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
                 L+      + TD     P   A      D+V+ L +     +
Sbjct: 177 ------LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.8 bits (154), Expect = 3e-11
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 22/154 (14%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
            +     L LA  L    +L  L+      D+    + G++ALH AA  +  + A +L+ 
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146

Query: 89  EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
                        GA+     +    P+  AA+  S +T +V L        +R+     
Sbjct: 147 N------------GANKDMQNNREETPLFLAAREGSYETAKVLL----DHFANRDIT--- 187

Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 182
            D    LP   A        V L  +     S Q
Sbjct: 188 -DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.9 bits (105), Expect = 6e-05
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L+   +G N  + NN+++  L LA          +LL +    +        R    IA 
Sbjct: 144 LL--KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF--ANRDITDHMDRLPRDIAQ 199

Query: 76  IYDFDECARILVS 88
                +  R+L  
Sbjct: 200 ERMHHDIVRLLDE 212

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  125 bits (317), Expect = 8e-33
 Identities = 48/310 (15%), Positives = 82/310 (26%), Gaps = 74/310 (23%)

Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
           G     I +                    R    G        K+  S +          
Sbjct: 1   GEVNKIIGS--------------------RTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD 40

Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
           +            +E   P  +A    D +A+   L     +     +  T +      G
Sbjct: 41  V-----------VSEYETPWWTAARKADEQALSQ-LLEDRDVDAVDENGRTALLFVAGLG 88

Query: 439 ALDIVRLMFNLQPSEKLVC----LNSTDAQ-KMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
           +   VRL         L      L+  D +  +T LH AA + R +VV+ L++ GAD+ V
Sbjct: 89  SDKCVRL---------LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139

Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV 553
            D+   + L LA            ++    I L+ +       +L      + +      
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN-----VLEGQVFEYAE------ 188

Query: 554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGL 613
                          I  K    +   +L       +           +      D E  
Sbjct: 189 ------------VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGV--HVA-EDVAKDYE-- 231

Query: 614 TPLHIASKEG 623
             L  A  E 
Sbjct: 232 DGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  113 bits (284), Expect = 2e-28
 Identities = 38/313 (12%), Positives = 73/313 (23%), Gaps = 87/313 (27%)

Query: 281 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
             +      +  +    P  +        +          T    AA    ++    L  
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-----SEYETPWWTAARKADEQALSQL-- 64

Query: 341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHS 400
                           + D   +A  +                          G   L  
Sbjct: 65  ----------------LEDRDVDAVDE-------------------------NGRTALLF 83

Query: 401 AVHGGDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC-- 457
               G  K V L  ++GA +  +      T +H+A      ++V           LV   
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA---------LVELG 134

Query: 458 --LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVL 515
             +   D + +T L  A    +       +  G  + +         +L      +  V 
Sbjct: 135 ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN----VLEGQVFEYAEV- 189

Query: 516 TLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
                   I+ K    +++ +L+    GG  +                   A    K+  
Sbjct: 190 ------DEIVEKRGKGKDVEYLVRWKDGGDCEWV------------KGVHVAEDVAKDY- 230

Query: 576 NESPLHLAARYGR 588
            E  L  A     
Sbjct: 231 -EDGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  106 bits (268), Expect = 3e-26
 Identities = 45/267 (16%), Positives = 81/267 (30%), Gaps = 53/267 (19%)

Query: 106 KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGD 165
            R    G        K+  S +          +            +E   P  +A    D
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----------VSEYETPWWTAARKAD 57

Query: 166 FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTD 221
            +A+   L     +     +  T +      G+   VRL         L      L+  D
Sbjct: 58  EQALSQ-LLEDRDVDAVDENGRTALLFVAGLGSDKCVRL---------LAEAGADLDHRD 107

Query: 222 AQ-KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NG 274
            +  +T LH AA + R +VV+ L++ GAD+ V D+   + L LA               G
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 167

Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
                +  +K   +          +  I+ +             G+   ++    D  +C
Sbjct: 168 RR---IGLEKVINVLEGQVFEYAEVDEIVEKRG----------KGKDVEYLVRWKDGGDC 214

Query: 335 ARIL--------VKDFGASLKRACSNG 353
             +          KD+   L+ A +  
Sbjct: 215 EWVKGVHVAEDVAKDYEDGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 92.7 bits (231), Expect = 2e-21
 Identities = 43/272 (15%), Positives = 74/272 (27%), Gaps = 56/272 (20%)

Query: 4   LSVQSDNKNKSRLIPS-SSGVNTRILNNKKQAVLHLATELNKVPILLILLQ-----YKDM 57
             ++  + +    +PS     +   + ++ +     A        L  LL+       D 
Sbjct: 19  YLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLEDRDVDAVD- 74

Query: 58  IDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASL-KRACSNGYYPI 116
                  E+GRTAL   A    D+C R+L               GA L  R    G   +
Sbjct: 75  -------ENGRTALLFVAGLGSDKCVRLLAEA------------GADLDHRDMRGGLTAL 115

Query: 117 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG 176
           H AA     + +E  ++ G  I           D  G   L  A            ++ G
Sbjct: 116 HMAAGYVRPEVVEALVELGADIEVE--------DERGLTALELAREILKTTPKGNPMQFG 167

Query: 177 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 236
            +I  ++      V         ++               +     +     +     D 
Sbjct: 168 RRIGLEK---VINVLEGQVFEYAEVDE-------------IVEKRGKGKDVEYLVRWKDG 211

Query: 237 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
            D         A+    D E    L  A +  
Sbjct: 212 GDCEWVKGVHVAEDVAKDYE--DGLEYAVAES 241

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  124 bits (315), Expect = 1e-32
 Identities = 55/310 (17%), Positives = 86/310 (27%), Gaps = 88/310 (28%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
           E G + LH+A I++       +++                   A  N  +          
Sbjct: 6   EDGDSFLHLAIIHEEKALTMEVIR-------------QVKGDLAFLNFQNN--------- 43

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
                               PLH AV     +  E  L +G     + F  +TP+HLAC 
Sbjct: 44  ----------------LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87

Query: 437 QGALDIVR-LMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
           QG L  V  L  +         L +T+    T LH A++     +V+ L+  GAD+N  +
Sbjct: 88  QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147

Query: 496 KEK-RSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
               R+ L LA        V                                        
Sbjct: 148 PCNGRTALHLAVDLQNPDLV---------------------------------------- 167

Query: 555 AVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
                  L+  GA +N       SP  L          ++L           +   E   
Sbjct: 168 -----SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ--LTL-ENLQMLPESED 219

Query: 615 PLHIASKEGF 624
                ++  F
Sbjct: 220 EESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  113 bits (286), Expect = 1e-28
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 34/261 (13%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
           +G   +H A  +         ++  +         ++  +     PLH AV     +  E
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF----LNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVR-LMFNLQPSEKLVCLNSTDAQKMTPLH 229
             L +G     + F  +TP+HLAC QG L  V  L  +         L +T+    T LH
Sbjct: 63  ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122

Query: 230 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLH 289
            A++     +V+ L+  GAD+N  +                  NG          +  LH
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQE----------------PCNG----------RTALH 156

Query: 290 LATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRA 349
           LA +L    ++ +LL+     D+ +    G +   +          + L +       + 
Sbjct: 157 LAVDLQNPDLVSLLLKCG--ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQM 213

Query: 350 CSNGYYPIHDAAKNASSKTME 370
                       ++  ++  E
Sbjct: 214 LPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  108 bits (273), Expect = 5e-27
 Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 17/202 (8%)

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
           + +HLA       +   +      +    LN  +  + TPLH A + ++ ++ + L+  G
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDL-AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 248 ADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRIL------NNKKQAVLHLATELN 295
            D  + D    +PL LA  +G   +      +     +       N      LHLA+   
Sbjct: 69  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128

Query: 296 KVPILLILLQYKDMIDI-LQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY 354
            + I+ +L+      D+  Q   +GRTALH+A      +   +L+   GA + R    GY
Sbjct: 129 YLGIVELLVSLG--ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGY 185

Query: 355 YPIHDAAKNASSKTMEVFLQFG 376
            P        S++  +   Q  
Sbjct: 186 SPYQLTWGRPSTRIQQQLGQLT 207

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 94.9 bits (237), Expect = 3e-22
 Identities = 43/247 (17%), Positives = 65/247 (26%), Gaps = 55/247 (22%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
                    NN +Q  LHLA   N+  I   LL      D       G T LH+A     
Sbjct: 33  GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGC 90

Query: 80  DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
                +L                                   +  S              
Sbjct: 91  LASVGVLTQ----------------------------SCTTPHLHS-------------- 108

Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGA 198
                ++   +  G+  LH A   G    VEL +  GA ++ Q   +  T +HLA     
Sbjct: 109 -----ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163

Query: 199 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
            D+V L+      +    +N    Q  +P           + Q L     +   +  E  
Sbjct: 164 PDLVSLLL-----KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218

Query: 259 SPLLLAA 265
                  
Sbjct: 219 DEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
              +  + LHL +++     K    EV        +    A +N +NN  ++PLHLA   
Sbjct: 4   LTEDGDSFLHLAIIHEE---KALTMEVI-----RQVKGDLAFLNFQNNLQQTPLHLAVIT 55

Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
            +    + LL    G       D  G TPLH+A ++G
Sbjct: 56  NQPEIAEALLG--AGCD-PELRDFRGNTPLHLACEQG 89

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  123 bits (311), Expect = 1e-32
 Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 26/198 (13%)

Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           +      +   +     +               N  D+   TPL  A M    + +  L+
Sbjct: 7   NGEIVEKIKDEKSINQNLD-----------FLRNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
           +    L   D E  + L+ A           L+   +N+  KD + +  L   ++   G+
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF--GY 113

Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
                 E++       L+  GA +N +N   E+PL +A++YGR   VKKLL    G+  I
Sbjct: 114 -----SEMS-----YFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE--LGAD-I 160

Query: 606 NESDGEGLTPLHIASKEG 623
           +  D  GLT    A   G
Sbjct: 161 SARDLTGLTAEASARIFG 178

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (271), Expect = 3e-27
 Identities = 36/208 (17%), Positives = 78/208 (37%), Gaps = 23/208 (11%)

Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           G +           + ++         + +     TP+ +AC  G  + +  +      E
Sbjct: 8   GEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV-----E 56

Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
               L   D +  T L  A   +R  + + L+ +G+++N  D   ++PL+ +   G  + 
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116

Query: 514 VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN 573
              L+ + AN+  +++     L +    G         E+      + L+ LGA I+ ++
Sbjct: 117 SYFLLEHGANVNDRNLEGETPLIVASKYG--RS-----EIV-----KKLLELGADISARD 164

Query: 574 NSNESPLHLAARYGRYNTVKKLLSSERG 601
            +  +    A  +GR   +K      R 
Sbjct: 165 LTGLTAEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 99.0 bits (248), Expect = 4e-24
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 25/167 (14%)

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL--NVLDKEKRSPLLLAASRGGWKTVLT 516
           +  D                   +  I++  D   N  D   R+PL++A   G    +  
Sbjct: 2   SHMDKNGEIVEKIKD--------EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDK 53

Query: 517 LVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN 576
           LV N   +  KDI     L   V N    +      +A     E L++ G+ +N K+ S 
Sbjct: 54  LVENFDKLEDKDIEGSTALIWAVKN--NRL-----GIA-----EKLLSKGSNVNTKDFSG 101

Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           ++PL  +  +G       LL    G+  +N+ + EG TPL +ASK G
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLE--HGA-NVNDRNLEGETPLIVASKYG 145

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 97.5 bits (244), Expect = 1e-23
 Identities = 40/240 (16%), Positives = 77/240 (32%), Gaps = 63/240 (26%)

Query: 279 ILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
            ++   + V  +  E +    L  L  Y+D         + RT L +A +   +     L
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNYRD--------SYNRTPLMVACMLGMENAIDKL 54

Query: 339 VKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPL 398
           V+                 +                                  EG+  L
Sbjct: 55  VE-----------------NFDKLEDKDI-------------------------EGSTAL 72

Query: 399 HSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC- 457
             AV        E  L  G+ ++T+ F   TP+  +   G  ++            L+  
Sbjct: 73  IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF---------LLEH 123

Query: 458 ---LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
              +N  + +  TPL  A+ + R ++V+ L++ GAD++  D    +    A   G  + +
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 96.3 bits (241), Expect = 4e-23
 Identities = 41/246 (16%), Positives = 75/246 (30%), Gaps = 74/246 (30%)

Query: 27  ILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 86
            ++   + V  +  E +    L  L  Y+D         + RT L +A +   +     L
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNYRD--------SYNRTPLMVACMLGMENAIDKL 54

Query: 87  VSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI 146
           V                             +                             
Sbjct: 55  VE----------------------------NFDKLEDK---------------------- 64

Query: 147 SLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
              D EG+  L  AV        E  L  G+ ++T+ F   TP+  +   G  ++     
Sbjct: 65  ---DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF-- 119

Query: 207 NLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL 262
                  L+     +N  + +  TPL  A+ + R ++V+ L++ GAD++  D    +   
Sbjct: 120 -------LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172

Query: 263 LAASRG 268
            A   G
Sbjct: 173 SARIFG 178

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 92.8 bits (232), Expect = 7e-22
 Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 61/243 (25%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
           NG        + + ++ ++                 +  D+    PL  A   G   A++
Sbjct: 7   NGEIVEKIKDEKSINQNLDFL--------------RNYRDSYNRTPLMVACMLGMENAID 52

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 226
             +++  K+  +  + ST +  A     L I            L+     +N+ D    T
Sbjct: 53  KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEK---------LLSKGSNVNTKDFSGKT 103

Query: 227 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQA 286
           PL  + +F   ++  +L++ GA++N  + E  +PL++A+                 + + 
Sbjct: 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK--------------YGRSEI 149

Query: 287 VLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASL 346
           V     +         LL+     DI      G TA   A I+   E  +I        +
Sbjct: 150 V-----KK--------LLELG--ADISARDLTGLTAEASARIFGRQEVIKIFT-----EV 189

Query: 347 KRA 349
           +RA
Sbjct: 190 RRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.6 bits (221), Expect = 2e-20
 Identities = 30/195 (15%), Positives = 59/195 (30%), Gaps = 20/195 (10%)

Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
           +      +   +     +               N  D+   TPL  A M    + +  L+
Sbjct: 7   NGEIVEKIKDEKSINQNLD-----------FLRNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVP 298
           +    L   D E  + L+ A               G N    +   +  L  +       
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115

Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIH 358
           +   LL++    ++      G T L +A+ Y   E  + L+ + GA +      G     
Sbjct: 116 MSYFLLEHG--ANVNDRNLEGETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEA 172

Query: 359 DAAKNASSKTMEVFL 373
            A      + +++F 
Sbjct: 173 SARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 74.7 bits (185), Expect = 1e-15
 Identities = 39/275 (14%), Positives = 77/275 (28%), Gaps = 94/275 (34%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL--NVLDKEKRSPLLLAASRGGWKTNGV 275
           +  D                   +  I++  D   N  D   R+PL++A           
Sbjct: 2   SHMDKNGEIVEKIKD--------EKSINQNLDFLRNYRDSYNRTPLMVACM--------- 44

Query: 276 NTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECA 335
                   + A+     +         L++      +      G TAL  A   +    A
Sbjct: 45  -----LGMENAI-----DK--------LVENF--DKLEDKDIEGSTALIWAVKNNRLGIA 84

Query: 336 RILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN 395
             L+                    +  N                              G 
Sbjct: 85  EKLLS-----------------KGSNVNTKDF-------------------------SGK 102

Query: 396 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
            PL  ++  G  +     L+ GA ++ +  +  TP+ +A   G  +IV+          L
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK---------L 153

Query: 456 VC----LNSTDAQKMTPLHCAAMFDRCDVVQYLID 486
           +     +++ D   +T    A +F R +V++   +
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  122 bits (308), Expect = 2e-32
 Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 25/198 (12%)

Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           +    +   C +G    VRL            LN  D    +PLH A    R  VV+ LI
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWL----DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GA +NV+++   +PL LAAS G    V  L++ KA+I   + +    LH       G 
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW--GQ 117

Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII 605
                 +VA     E+L+  GA +++ N   E P+  A    R    ++      G   +
Sbjct: 118 D-----QVA-----EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK--MGQ-NL 164

Query: 606 NESDGEGLTPLHIASKEG 623
           N        P      +G
Sbjct: 165 NR------IPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  100 bits (253), Expect = 6e-25
 Identities = 41/185 (22%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
           +    +   C +G    VRL            LN  D    +PLH A    R  VV+ LI
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWL----DNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVP 298
             GA +NV+++   +PL LAAS G             +   +N      LH A    +  
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119

Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIH 358
           +   L+       +    ++G   +  A     +       K  G +L R       P  
Sbjct: 120 VAEDLVANG--ALVSICNKYGEMPVDKAKAPLRELLRERAEK-MGQNLNRI------PYK 170

Query: 359 DAAKN 363
           D    
Sbjct: 171 DTFWK 175

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 98.3 bits (246), Expect = 5e-24
 Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 54/214 (25%)

Query: 315 GGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
           G       +            R+ +            N    ++    +           
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWL-----------DNTENDLNQGDDH----------- 38

Query: 375 FGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
                              G  PLH A   G    VE+ +  GA+I+       TP+HLA
Sbjct: 39  -------------------GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA 79

Query: 435 CSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 490
            S G  DIV+          L+     +N+ +     PLH A  + +  V + L+  GA 
Sbjct: 80  ASHGHRDIVQK---------LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130

Query: 491 LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
           +++ +K    P+  A +           +   N+
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 90.2 bits (225), Expect = 4e-21
 Identities = 38/210 (18%), Positives = 65/210 (30%), Gaps = 38/210 (18%)

Query: 63  GGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
           G       +            R+ +    E D +   D          +G+ P+H A + 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLD-NTEND-LNQGD---------DHGFSPLHWACRE 49

Query: 123 ASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ 182
             S  +E+ +  G  I           +   + PLH A   G    V+  L+  A I+  
Sbjct: 50  GRSAVVEMLIMRGARINVM--------NRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101

Query: 183 QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCD 238
               + P+H AC  G   +            LV     ++  +     P+  A    R  
Sbjct: 102 NEHGNVPLHYACFWGQDQVAED---------LVANGALVSICNKYGEMPVDKAKAPLREL 152

Query: 239 VVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           + +     G +LN      R P      +G
Sbjct: 153 LRERAEKMGQNLN------RIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.3 bits (207), Expect = 1e-18
 Identities = 39/223 (17%), Positives = 60/223 (26%), Gaps = 74/223 (33%)

Query: 225 MTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNK 283
           M  +           V+  +D    DLN  D    SPL  A   G               
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG--------------- 50

Query: 284 KQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDF 342
                  A  E+        L+       I        T LH+AA +   +  + L++  
Sbjct: 51  -----RSAVVEM--------LIMRG--ARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-- 93

Query: 343 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAV 402
                          + A  NA ++                          GN+PLH A 
Sbjct: 94  ---------------YKADINAVNE-------------------------HGNVPLHYAC 113

Query: 403 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
             G  +  E  + +GA +S        PV  A +     +   
Sbjct: 114 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 78.6 bits (195), Expect = 4e-17
 Identities = 38/134 (28%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-----LHLLVLNGGGHIKEF 549
             E    +      G    V   + N  N    D+N+ +      LH       G     
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTEN----DLNQGDDHGFSPLHWACRE--GRS--- 52

Query: 550 AEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESD 609
              V      E LI  GA IN+ N  +++PLHLAA +G  + V+KLL     +  IN  +
Sbjct: 53  --AVV-----EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ--YKAD-INAVN 102

Query: 610 GEGLTPLHIASKEG 623
             G  PLH A   G
Sbjct: 103 EHGNVPLHYACFWG 116

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.6 bits (182), Expect = 2e-15
 Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 21/169 (12%)

Query: 36  LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
           +           + + L   +  D+ QG +HG + LH A          +L+        
Sbjct: 9   IFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLIMR------ 61

Query: 96  IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNL 155
                 GA +         P+H AA +     ++  LQ+   I      +    +  GN+
Sbjct: 62  ------GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI----NAV----NEHGNV 107

Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
           PLH A   G  +  E  + +GA +S        PV  A +     +   
Sbjct: 108 PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 13/107 (12%), Positives = 25/107 (23%), Gaps = 22/107 (20%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L+      +   +N      LH A    +  +   L+       +    ++G   +  A 
Sbjct: 91  LL--QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG--ALVSICNKYGEMPVDKAK 146

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN 122
               +                     G +L R       P  D    
Sbjct: 147 APLRELLRERAEKM------------GQNLNRI------PYKDTFWK 175

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  121 bits (307), Expect = 3e-32
 Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 19/188 (10%)

Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
           S  +H   +QG LD ++        +    +N  D +  TPL  A+ F   + V++L++ 
Sbjct: 3   SLSIHQLAAQGELDQLKEHL----RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW 58

Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
           GAD ++L KE+ S L LA++ G    V  L+    +I + D N    L   V     H+ 
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG--NHV- 115

Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINE 607
               +       E L+  GA +  + +S  +P+ LA   G     + + +       + +
Sbjct: 116 ----KCV-----EALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN--HIL-KLFQ 163

Query: 608 SDGEGLTP 615
           S+     P
Sbjct: 164 SNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.8 bits (250), Expect = 1e-24
 Identities = 37/216 (17%), Positives = 65/216 (30%), Gaps = 54/216 (25%)

Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
              ++H  A     +  +  +             G   ++    +    T          
Sbjct: 2   DSLSIHQLAAQGELDQLKEHL-----------RKGDNLVN--KPDERGFT---------- 38

Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
                             PL  A   G+ + V   L+ GA       +  + + LA + G
Sbjct: 39  ------------------PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG 80

Query: 439 ALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
             DIV L         L+     +N  D    TPL  A   +    V+ L+  GADL   
Sbjct: 81  YTDIVGL---------LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131

Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN 530
                +P+ LA + G  K    +  +   +   ++ 
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 98.6 bits (247), Expect = 4e-24
 Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 13/176 (7%)

Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
           S  +H   +QG LD ++        +    +N  D +  TPL  A+ F   + V++L++ 
Sbjct: 3   SLSIHQLAAQGELDQLKEHL----RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW 58

Query: 247 GADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPIL 300
           GAD ++L KE+ S L LA++ G            V+  I +      L  A   N V  +
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCV 118

Query: 301 LILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYP 356
             LL      D+    + G T + +A    + +  +++       L ++      P
Sbjct: 119 EALLARG--ADLTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 96.7 bits (242), Expect = 2e-23
 Identities = 31/198 (15%), Positives = 58/198 (29%), Gaps = 32/198 (16%)

Query: 67  GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
              ++H  A     +  +  + +    + +   D           G+ P+  A+     +
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRK--GDNLVNKPD---------ERGFTPLIWASAFGEIE 50

Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
           T+   L++G                E    L  A  GG    V L L+    I+   ++ 
Sbjct: 51  TVRFLLEWGADPHIL--------AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102

Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQY 242
            TP+  A     +  V           L+     L +      TP+  A       V Q 
Sbjct: 103 GTPLLYAVRGNHVKCVEA---------LLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153

Query: 243 LIDEGADLNVLDKEKRSP 260
           + +    L   +     P
Sbjct: 154 IENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.9 bits (232), Expect = 4e-22
 Identities = 33/159 (20%), Positives = 51/159 (32%), Gaps = 49/159 (30%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADL-NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
              +H  A     D ++  + +G +L N  D+   +PL+ A++ G               
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--------------- 47

Query: 525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
                       +              E         L+  GA  ++     ES L LA+
Sbjct: 48  -----------EI--------------ETV-----RFLLEWGADPHILAKERESALSLAS 77

Query: 585 RYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
             G  + V  LL   R    IN  D  G TPL  A +  
Sbjct: 78  TGGYTDIVGLLLE--RDV-DINIYDWNGGTPLLYAVRGN 113

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 89.0 bits (222), Expect = 8e-21
 Identities = 43/279 (15%), Positives = 74/279 (26%), Gaps = 112/279 (40%)

Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADL-NVLDKEKRSPLLLAASRGGWKTNGVNTRILNNK 283
              +H  A     D ++  + +G +L N  D+   +PL+ A++ G               
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--------------- 47

Query: 284 KQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDF 342
                 + T           LL++    D     +   +AL +A+   + +   +L++  
Sbjct: 48  -----EIETVRF--------LLEWG--ADPHILAKERESALSLASTGGYTDIVGLLLE-- 90

Query: 343 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAV 402
                           D   N                              G  PL  AV
Sbjct: 91  ---------------RDVDINIYDW-------------------------NGGTPLLYAV 110

Query: 403 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD 462
            G   K VE  L  GA ++T+     TP+ LA + G                        
Sbjct: 111 RGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR---------------------- 148

Query: 463 AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSP 501
                            V Q + +    L   +     P
Sbjct: 149 ----------------KVQQVIENHILKLFQSNLVPADP 171

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  120 bits (305), Expect = 5e-32
 Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
            +   +     L  AA   R D V+ L+  GAD+N  D    +PL LAA  G  + V  L
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66

Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
           ++N A++   D      L L  L   GH+     E+      E L+  GA +N  +    
Sbjct: 67  LKNGADVNAVDHAGMTPLRLAALF--GHL-----EIV-----EVLLKNGADVNANDMEGH 114

Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           +PLHLAA +G    V+ LL    G+  +N  D  G T   I+   G
Sbjct: 115 TPLHLAAMFGHLEIVEVLLK--NGA-DVNAQDKFGKTAFDISIDNG 157

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (277), Expect = 3e-28
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 25/176 (14%)

Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVV 481
           DL   +  A   G  D VR+         L+     +N+ DA   TPLH AA     ++V
Sbjct: 13  DLGKKLLEAARAGRDDEVRI---------LMANGADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 482 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN 541
           + L+  GAD+N +D    +PL LAA  G  + V  L++N A++   D+     LHL  + 
Sbjct: 64  EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123

Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
             GH+     E+      E L+  GA +N ++   ++   ++   G  +  + L  
Sbjct: 124 --GHL-----EIV-----EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 94.7 bits (237), Expect = 8e-23
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 44/196 (22%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
            ++    L  A   G    V + + +GA ++ +     TP+HLA   G L+IV +     
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV----- 65

Query: 210 PSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
               L+     +N+ D   MTPL  AA+F   ++V+ L+  GAD+N  D E  +PL LAA
Sbjct: 66  ----LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121

Query: 266 SRGGWKTNGVNTRILNNKKQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALH 324
             G                    HL   E+        LL+     D+    + G+TA  
Sbjct: 122 MFG--------------------HLEIVEV--------LLKNG--ADVNAQDKFGKTAFD 151

Query: 325 IAAIYDFDECARILVK 340
           I+     ++ A IL K
Sbjct: 152 ISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 87.0 bits (217), Expect = 3e-20
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 9/164 (5%)

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT---- 272
            +   +     L  AA   R D V+ L+  GAD+N  D    +PL LAA  G  +     
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66

Query: 273 --NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
             NG +   +++     L LA     + I+ +LL+     D+      G T LH+AA++ 
Sbjct: 67  LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG--ADVNANDMEGHTPLHLAAMFG 124

Query: 331 FDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
             E   +L+K  GA +      G      +  N +    E+  +
Sbjct: 125 HLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 85.5 bits (213), Expect = 1e-19
 Identities = 54/219 (24%), Positives = 81/219 (36%), Gaps = 73/219 (33%)

Query: 61  LQGGEH-------GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGY 113
           ++G  H           L  AA    D+  RIL++                         
Sbjct: 1   MRGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMA------------------------- 35

Query: 114 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCL 173
              + A  NA                          DA G  PLH A   G  + VE+ L
Sbjct: 36  ---NGADVNAE-------------------------DASGWTPLHLAAFNGHLEIVEVLL 67

Query: 174 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLH 229
           K+GA ++       TP+ LA   G L+IV +         L+     +N+ D +  TPLH
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEV---------LLKNGADVNANDMEGHTPLH 118

Query: 230 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
            AAMF   ++V+ L+  GAD+N  DK  ++   ++   G
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 53.1 bits (129), Expect = 2e-08
 Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 57/189 (30%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L+  ++G +    +      LHLA     + I+ +LL+     D+      G T L +AA
Sbjct: 33  LM--ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG--ADVNAVDHAGMTPLRLAA 88

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
           ++   E   +L+                             + A  NA+           
Sbjct: 89  LFGHLEIVEVLLK----------------------------NGADVNAN----------- 109

Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 195
                         D EG+ PLH A   G  + VE+ LK+GA ++ Q     T   ++  
Sbjct: 110 --------------DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155

Query: 196 QGALDIVRL 204
            G  D+  +
Sbjct: 156 NGNEDLAEI 164

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  124 bits (312), Expect = 5e-32
 Identities = 46/265 (17%), Positives = 77/265 (29%), Gaps = 48/265 (18%)

Query: 397 PLHSAVHGGDFKAVELCL-------KSGAKISTQQFDL-STPVHLA---CSQGALDIVRL 445
            +  AV   + + +E  L       K       +  +   T +  A      G  D + L
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 446 M------FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK- 498
           +       +            +  +  T LH A       +V  L++ GAD+        
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 499 -------------RSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNG 542
                          PL LAA       V  L++N    A+I  +D     +LH LV   
Sbjct: 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVA 195

Query: 543 GGHIKEFAEEVAAVFL----GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSS 598
              +       +        G  L        + N    +PL LAA  G+   +  +L  
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL-- 253

Query: 599 ERGSFIINESDGEGLTPLHIASKEG 623
                   + +       H A+   
Sbjct: 254 --------QREIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 99.5 bits (248), Expect = 2e-23
 Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 37/278 (13%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQY-----KDMIDI-LQGGEHGRTALHI 73
           S     +      +  +  A   +    L  LL +     K + D   +  E G+T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 74  AAI---YDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEV 130
           A +      ++   +L+    + D  + +   AS   +   G   +H A +  +   + +
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTD-SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119

Query: 131 FLQFGESI------GCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG---AKIST 181
            ++ G  +         ++         G LPL  A        V+  L++    A IS 
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA 179

Query: 182 QQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV-----------CLNSTDAQKMTPLHC 230
           +    +T +H         +    F      +++               T+ + +TPL  
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           AA   +  V+ Y++            +      AA   
Sbjct: 240 AASSGKIGVLAYILQREIH-------EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 93.7 bits (233), Expect = 2e-21
 Identities = 41/309 (13%), Positives = 82/309 (26%), Gaps = 73/309 (23%)

Query: 188 TPVHLACSQGALDIVR--LMFNLQPSEKLVCLNSTD-AQKMTPLHCAAMFDRC---DVVQ 241
             +  A +Q     +   L F  +  ++L      D     T L  A +       D + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 242 YLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILL 301
            L+D     + L                 +    +      K Q  LH+A E   + ++ 
Sbjct: 75  LLLDVARKTDSLK----------------QFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

Query: 302 ILLQ------------YKDMIDILQGGEHGRTALHIAAIYDFDECARILVK--DFGASLK 347
           +L++            +        G   G   L +AA  +     + L++     A + 
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF 407
              S G   +H   + A +                            N    ++++    
Sbjct: 179 ARDSVGNTVLHALVEVADNTV-------------------------DNTKFVTSMYNEIL 213

Query: 408 KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT 467
                   +            TP+ LA S G + ++              +   +  +  
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY------------ILQREIHEPE 261

Query: 468 PLHCAAMFD 476
             H AA   
Sbjct: 262 CRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 91.4 bits (227), Expect = 1e-20
 Identities = 37/212 (17%), Positives = 57/212 (26%), Gaps = 48/212 (22%)

Query: 429 TPVHLACSQGALDIVR--LMFNLQPSEKLVCLNSTD-AQKMTPLHCAAMFDRC---DVVQ 482
             +  A +Q     +   L F  +  ++L      D     T L  A +       D + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 483 YLIDEGADLNVL-----------DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
            L+D     + L             + ++ L +A  R     V  LV N A++       
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA--- 131

Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
                                                        E PL LAA   +   
Sbjct: 132 ----------------------------NGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163

Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           VK LL +      I+  D  G T LH   +  
Sbjct: 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVA 195

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.9 bits (166), Expect = 1e-12
 Identities = 21/159 (13%), Positives = 39/159 (24%), Gaps = 25/159 (15%)

Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTV-------LTLVRNKANILLKDINR-RNILHLLV 539
            A         R  +  A ++   + +           +   +   KD    +  L   +
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 540 LNGG-GH---IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
           LN   G    I    +        +  +N  A         ++ LH+A        V  L
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVN--ASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 596 LS-----------SERGSFIINESDGEGLTPLHIASKEG 623
           +                          G  PL +A+   
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 7/62 (11%)

Query: 565 LGACINLKNNSNESPLHLAARYGRYNTVKKLL-----SSERGSFIINESDGE-GLTPLHI 618
           + A        +   +  A        ++ LL     S +R +      D E G T L  
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLT-DSEFKDPETGKTCLLK 60

Query: 619 AS 620
           A 
Sbjct: 61  AM 62

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  121 bits (306), Expect = 2e-31
 Identities = 49/221 (22%), Positives = 84/221 (38%), Gaps = 28/221 (12%)

Query: 397 PLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 455
           PL  A    D +A+   LK  G ++  +     T +H+A     L+   ++    P    
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

Query: 456 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK-------------RSPL 502
             + S   +  T LH A +    ++V+ L+  GA ++                     PL
Sbjct: 66  EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125

Query: 503 LLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENL 562
             AA  G  + V  L+ + A+I  +D     +LH+L+L      K FA ++        L
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN---KTFACQMY-----NLL 177

Query: 563 INLGACINLK------NNSNESPLHLAARYGRYNTVKKLLS 597
           ++     +LK      NN   +P  LA   G     + L+ 
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  103 bits (258), Expect = 5e-25
 Identities = 34/176 (19%), Positives = 63/176 (35%), Gaps = 34/176 (19%)

Query: 467 TPLHCAAMFDRCDVVQ-YLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
           +PL  AA  +    +   L  EG +++       + L +AA     +  + L+     ++
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 526 LKDINRRNI-----LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN---- 576
            + +          LH+ V+N   ++      +        L+  GA ++ +   +    
Sbjct: 65  FEPMTSELYEGQTALHIAVINQ--NV-----NLV-----RALLARGASVSARATGSVFHY 112

Query: 577 ---------ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
                    E PL  AA  G    V+ L+    G+  I   D  G T LHI   + 
Sbjct: 113 RPHNLIYYGEHPLSFAACVGSEEIVRLLIE--HGA-DIRAQDSLGNTVLHILILQP 165

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           ESPL LAA+      + KLL  E     +++    G T LHIA+   
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCE--VHQRGAMGETALHIAALYD 48

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  118 bits (298), Expect = 5e-31
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 15/158 (9%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
              +H  A       +   I++   +N  D+E  +PL+ AA+ G    V  L++N A+  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
           L    R + L L    G  +      ++      + L++ G  +N  + +  +PL  A  
Sbjct: 64  LLGKGRESALSLACSKG--YT-----DIV-----KMLLDCGVDVNEYDWNGGTPLLYAVH 111

Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
                 VK LL    G+         G   + +A   G
Sbjct: 112 GNHVKCVKMLLE--SGA-DPTIETDSGYNSMDLAVALG 146

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  114 bits (288), Expect = 8e-30
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 17/170 (10%)

Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
           S  VH   +QG +  +         E+   +N TD +  TPL  AA   +  VV++L+  
Sbjct: 4   SLSVHQLAAQGEMLYLATRI-----EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
           GAD  +L K + S L LA S+G    V  L+    ++   D N    L   V     H+ 
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN--HV- 115

Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
               +       + L+  GA   ++ +S  + + LA   G  +  + + S
Sbjct: 116 ----KCV-----KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.9 bits (240), Expect = 3e-23
 Identities = 27/191 (14%), Positives = 49/191 (25%), Gaps = 25/191 (13%)

Query: 66  HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
               ++H  A           + +               +      G+ P+  AA +   
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ------------ENVINHTDEEGFTPLMWAAAHGQI 49

Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 185
             +E  LQ G                     L  A   G    V++ L  G  ++   ++
Sbjct: 50  AVVEFLLQNGADPQLL--------GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 101

Query: 186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 245
             TP+  A     +  V+++      E               +  A       V Q +  
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLL-----ESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156

Query: 246 EGADLNVLDKE 256
               L    KE
Sbjct: 157 HLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.5 bits (239), Expect = 4e-23
 Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 14/180 (7%)

Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
               ++H  A           ++     +      G+ P+  AA +     +E  LQ G 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
                 +             L  A   G    V++ L  G  ++   ++  TP+  A   
Sbjct: 61  DPQLLGKG--------RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG 112

Query: 438 GALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKE 497
             +  V+++      E               +  A       V Q +      L    KE
Sbjct: 113 NHVKCVKMLL-----ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 93.2 bits (233), Expect = 2e-22
 Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 13/160 (8%)

Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
           S  VH   +QG +  +         E+   +N TD +  TPL  AA   +  VV++L+  
Sbjct: 4   SLSVHQLAAQGEMLYLATRI-----EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 247 GADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPIL 300
           GAD  +L K + S L LA S+G           GV+    +      L  A   N V  +
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118

Query: 301 LILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
            +LL+     D     + G  ++ +A    +    +++  
Sbjct: 119 KMLLESG--ADPTIETDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 51.6 bits (125), Expect = 6e-08
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 575 SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           +N   +H  A  G    +   +   + + +IN +D EG TPL  A+  G
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIE--QEN-VINHTDEEGFTPLMWAAAHG 47

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  117 bits (297), Expect = 5e-31
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 15/157 (9%)

Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
             L  AA     + +  L+    ++N  +   R+ L      G  +    L+   AN  L
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDL 65

Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
           KD     ++H     G   +     +       + L+   A +N+++N    PLHLAA+ 
Sbjct: 66  KDRTGFAVIHDAARAG--FL-----DTL-----QTLLEFQADVNIEDNEGNLPLHLAAKE 113

Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           G    V+ L+     +  +   + +G T   +A   G
Sbjct: 114 GHLRVVEFLVK--HTASNVGHRNHKGDTACDLARLYG 148

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  104 bits (263), Expect = 2e-26
 Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 19/173 (10%)

Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
                +  A ++G L+ +  +      +  V +N+ +    T L         ++ + L+
Sbjct: 4   PWGNELASAAARGDLEQLTSLL-----QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL 57

Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
             GA+ ++ D+   + +  AA  G   T+ TL+  +A++ ++D      LHL    G  H
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG--H 115

Query: 546 IKEFAEEVAAVFLGENLINLGAC-INLKNNSNESPLHLAARYGRYNTVKKLLS 597
           +      V      E L+   A  +  +N+  ++   LA  YGR   V  + +
Sbjct: 116 L-----RVV-----EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 90.1 bits (225), Expect = 2e-21
 Identities = 38/193 (19%), Positives = 64/193 (33%), Gaps = 42/193 (21%)

Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
                L SA   GD + +   L++   ++ Q     T + +    G  +I R        
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARR------- 55

Query: 212 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
             L+      +  D      +H AA     D +Q L++  AD+N+ D E   PL LAA  
Sbjct: 56  --LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK- 112

Query: 268 GGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 327
                            + V     E       L+        ++      G TA  +A 
Sbjct: 113 -------------EGHLRVV-----EF------LVK---HTASNVGHRNHKGDTACDLAR 145

Query: 328 IYDFDECARILVK 340
           +Y  +E   ++  
Sbjct: 146 LYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 83.2 bits (207), Expect = 7e-19
 Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 25/185 (13%)

Query: 64  GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNA 123
            E     L  AA     E    L+                ++      G   +       
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQN------------NVNVNAQNGFGRTALQVMKLG- 48

Query: 124 SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
           + +     L  G +     +      D  G   +H A   G    ++  L+  A ++ + 
Sbjct: 49  NPEIARRLLLRGANP----DL----KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100

Query: 184 FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
            + + P+HLA  +G L +V  +           +   + +  T    A ++ R +VV  +
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLV----KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

Query: 244 IDEGA 248
              GA
Sbjct: 157 QANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 37/190 (19%)

Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
                +  A ++G L+ +  +      +  V +N+ +    T L         ++ + L+
Sbjct: 4   PWGNELASAAARGDLEQLTSLL-----QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL 57

Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILL 304
             GA+ ++ D+   + +  AA                     +     +         LL
Sbjct: 58  LRGANPDLKDRTGFAVIHDAAR--------------AGFLDTL-----QT--------LL 90

Query: 305 QYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRA-CSNGYYPIHDAAKN 363
           +++   D+      G   LH+AA          LV    AS        G      A   
Sbjct: 91  EFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLV-KHTASNVGHRNHKGDTACDLARLY 147

Query: 364 ASSKTMEVFL 373
             ++ + +  
Sbjct: 148 GRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 573 NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
                + L  AA  G    +  LL        +N  +G G T L +   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQ--NNV-NVNAQNGFGRTALQVMKL 47

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L+      +  I +N+    LHLA +   + ++  L++     ++      G TA  +A 
Sbjct: 89  LL--EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLAR 145

Query: 76  IYDFDECARILVS 88
           +Y  +E   ++ +
Sbjct: 146 LYGRNEVVSLMQA 158

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  117 bits (296), Expect = 2e-30
 Identities = 37/214 (17%), Positives = 83/214 (38%), Gaps = 28/214 (13%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           E    L +A      K  E+   +  ++     + +TP+++A     ++I +        
Sbjct: 5   EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKA------- 57

Query: 453 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAAS 507
             L+     +N  ++   +P   A    R +++ Y++     DLN  ++   + L+ AA 
Sbjct: 58  --LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

Query: 508 RGGWKTVLTLVRN-KANILLKDINRRNILH---LLVLNGGGHIKEFAEEVAAVFLGENLI 563
           +G    V  L+ + + +I  ++      L     L      +     +++      + L+
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY-----QDIV-----KLLM 165

Query: 564 NLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
             GA  ++K+NS  + +  A + G     K L  
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  117 bits (295), Expect = 3e-30
 Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 15/163 (9%)

Query: 462 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
             +    L  A   D   V + L D    ++ +D E  +PL +A      +    L+   
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 522 ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC-INLKNNSNESPL 580
           A+I L++    +          G       E+        ++      +N  N    + L
Sbjct: 63  ADINLQNSISDSPYLYAGAQ--GR-----TEIL-----AYMLKHATPDLNKHNRYGGNAL 110

Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
             AA  G  + VK LL    G   I+  +  G T L  A    
Sbjct: 111 IPAAEKGHIDNVKLLLE--DGREDIDFQNDFGYTALIEAVGLR 151

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  114 bits (289), Expect = 2e-29
 Identities = 39/205 (19%), Positives = 83/205 (40%), Gaps = 27/205 (13%)

Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
           ++   +  A  +    +  ++      +    ++  D +  TPL+ A   +  ++ + LI
Sbjct: 5   EVGALLEAANQRDTKKVKEILQ-----DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA-NILLKDINRRNILHLLVLNGGG 544
           D GAD+N+ +    SP L A ++G  + +  ++++   ++   +    N L        G
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK--G 117

Query: 545 HIKEFAEEVAAVFLGENLINLG-ACINLKNNSNESPLHLAARYGRYN-----TVKKLLSS 598
           HI     +       + L+  G   I+ +N+   + L  A      N      VK L+  
Sbjct: 118 HI-----DNV-----KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME- 166

Query: 599 ERGSFIINESDGEGLTPLHIASKEG 623
             G+   +  D  G T +  A+++G
Sbjct: 167 -NGAD-QSIKDNSGRTAMDYANQKG 189

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  100 bits (251), Expect = 2e-24
 Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 37/231 (16%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
                +  A +  + K  E+            +E+    D EGN PL+ AVH  D +  +
Sbjct: 5   EVGALLEAANQRDTKKVKEILQ----DTTYQVDEV----DTEGNTPLNIAVHNNDIEIAK 56

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC 230
             +  GA I+ Q     +P   A +QG  +I+  M           LN  +      L  
Sbjct: 57  ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML----KHATPDLNKHNRYGGNALIP 112

Query: 231 AAMFDRCDVVQYLIDEG-ADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLH 289
           AA     D V+ L+++G  D++  +    + L+ A                   +  V  
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN---------QLYQDIV-- 161

Query: 290 LATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
              +L        L++     D       GRTA+  A    + E ++IL +
Sbjct: 162 ---KL--------LMENG--ADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 90.6 bits (226), Expect = 4e-21
 Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 19/202 (9%)

Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
           ++   +  A  +    +  ++      +    ++  D +  TPL+ A   +  ++ + LI
Sbjct: 5   EVGALLEAANQRDTKKVKEILQ-----DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 245 DEGADLNVLDKEKRSPLLLAASRGGWKT-------NGVNTRILNNKKQAVLHLATELNKV 297
           D GAD+N+ +    SP L A ++G  +           +    N      L  A E   +
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 298 PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD-----ECARILVKDFGASLKRACSN 352
             + +LL+     DI    + G TAL  A           +  ++L+ + GA      ++
Sbjct: 120 DNVKLLLE-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM-ENGADQSIKDNS 177

Query: 353 GYYPIHDAAKNASSKTMEVFLQ 374
           G   +  A +   ++  ++  Q
Sbjct: 178 GRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 90.6 bits (226), Expect = 5e-21
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 43/231 (18%)

Query: 221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NG 274
             +    L  A   D   V + L D    ++ +D E  +PL +A      +        G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
            +  + N+   +    A    +  IL  +L++    D+ +   +G  AL  AA     + 
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT-PDLNKHNRYGGNALIPAAEKGHIDN 121

Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
            ++L++D    +      GY  + +A                                  
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREGN--------------------------- 154

Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
              L+  +       V+L +++GA  S +     T +  A  +G  +I ++
Sbjct: 155 --QLYQDI-------VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 88.7 bits (221), Expect = 2e-20
 Identities = 38/246 (15%), Positives = 74/246 (30%), Gaps = 65/246 (26%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
             +  A+L  A + +   +  IL        + +    G T L+IA   +  E A+ L+ 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTT--YQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 89  EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
                                         A  N                          
Sbjct: 61  ----------------------------RGADINLQ------------------------ 68

Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAK-ISTQQFDLSTPVHLACSQGALDIVRLMFN 207
            ++  + P   A   G  + +   LK     ++         +  A  +G +D V+L+  
Sbjct: 69  -NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL- 126

Query: 208 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRC-----DVVQYLIDEGADLNVLDKEKRSPLL 262
               +    ++  +    T L  A           D+V+ L++ GAD ++ D   R+ + 
Sbjct: 127 ---EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183

Query: 263 LAASRG 268
            A  +G
Sbjct: 184 YANQKG 189

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 85.2 bits (212), Expect = 3e-19
 Identities = 40/235 (17%), Positives = 74/235 (31%), Gaps = 54/235 (22%)

Query: 281 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
             +  A+L  A + +   +  IL        + +    G T L+IA   +  E A+ L+ 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTT--YQVDEVDTEGNTPLNIAVHNNDIEIAKALI- 59

Query: 341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHS 400
           D GA +    S    P   A                                        
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQ------------------------------------- 82

Query: 401 AVHGGDFKAVELCLKSGAK-ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
               G  + +   LK     ++         +  A  +G +D V+L+      +    ++
Sbjct: 83  ----GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL----EDGREDID 134

Query: 460 STDAQKMTPLHCAAMFDRC-----DVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
             +    T L  A           D+V+ L++ GAD ++ D   R+ +  A  +G
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 571 LKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           +K     + L  A +       + L         ++E D EG TPL+IA    
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQD--TTY-QVDEVDTEGNTPLNIAVHNN 50

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  114 bits (288), Expect = 5e-30
 Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 16/157 (10%)

Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
             L  AA   + D V+ L+  GA     D    SPL LAA  G + T   L+R   +   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
           +    R  LH+    G  H       +      E L+  GA +N K+    + LH A  +
Sbjct: 63  RTKVDRTPLHMAASEG--HA-----NIV-----EVLLKHGADVNAKDMLKMTALHWATEH 110

Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
                V+ L+    G+  ++       T   I+   G
Sbjct: 111 NHQEVVELLIK--YGA-DVHTQSKFCKTAFDISIDNG 144

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  103 bits (260), Expect = 4e-26
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 30/176 (17%)

Query: 426 DLSTPVHLACSQGALDIVRLM------FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD 479
           DL   +  A   G  D VR++      F             TD    +PLH AA +    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT------------TDWLGTSPLHLAAQYGHFS 48

Query: 480 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLV 539
             + L+  G   +   K  R+PL +AAS G    V  L+++ A++  KD+ +   LH   
Sbjct: 49  TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT 108

Query: 540 LNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
            +   H      EV      E LI  GA ++ ++   ++   ++   G  +  + L
Sbjct: 109 EHN--HQ-----EVV-----ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 88.6 bits (221), Expect = 6e-21
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 43/191 (22%)

Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
           +    L  A   G    V + + +GA  +T     ++P+HLA   G      +       
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEV------- 52

Query: 212 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
             L+      ++      TPLH AA     ++V+ L+  GAD+N  D  K + L  A   
Sbjct: 53  --LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE- 109

Query: 268 GGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 327
                        +N ++ V     EL        L++Y    D+    +  +TA  I+ 
Sbjct: 110 -------------HNHQEVV-----EL--------LIKYG--ADVHTQSKFCKTAFDISI 141

Query: 328 IYDFDECARIL 338
               ++ A IL
Sbjct: 142 DNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 84.4 bits (210), Expect = 2e-19
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 22/162 (13%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
           +    + +AA+      + + +  G              D  G  PLH A   G F   E
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT---------DWLGTSPLHLAAQYGHFSTTE 51

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 226
           + L++G     +     TP+H+A S+G  +IV +         L+     +N+ D  KMT
Sbjct: 52  VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV---------LLKHGADVNAKDMLKMT 102

Query: 227 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
            LH A   +  +VV+ LI  GAD++   K  ++   ++   G
Sbjct: 103 ALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 83.6 bits (208), Expect = 4e-19
 Identities = 44/195 (22%), Positives = 70/195 (35%), Gaps = 56/195 (28%)

Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
               L  AA    D+  RIL+           +NG         +    +          
Sbjct: 2   LGKKLLEAARAGQDDEVRILM-----------ANG----APFTTDWLGTS---------- 36

Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
                             PLH A   G F   E+ L++G     +     TP+H+A S+G
Sbjct: 37  ------------------PLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78

Query: 439 ALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
             +IV +         L+     +N+ D  KMT LH A   +  +VV+ LI  GAD++  
Sbjct: 79  HANIVEV---------LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129

Query: 495 DKEKRSPLLLAASRG 509
            K  ++   ++   G
Sbjct: 130 SKFCKTAFDISIDNG 144

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 79.4 bits (197), Expect = 1e-17
 Identities = 44/220 (20%), Positives = 61/220 (27%), Gaps = 72/220 (32%)

Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
             L  AA   + D V+ L+  GA     D    SPL LAA                    
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQ--------------YGHFS 48

Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
                  E+        LL+    +      +  RT LH+AA         +L+K     
Sbjct: 49  TT-----EV--------LLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLK----- 88

Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG 405
                       H A  NA                                 LH A    
Sbjct: 89  ------------HGADVNAKDM-------------------------LKMTALHWATEHN 111

Query: 406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
             + VEL +K GA + TQ     T   ++   G  D+  +
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 67.0 bits (165), Expect = 2e-13
 Identities = 37/174 (21%), Positives = 56/174 (32%), Gaps = 33/174 (18%)

Query: 36  LHLATELNKVPILLILLQY-----KDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQ 90
           L  A    +   + IL+        D          G + LH+AA Y       +L+   
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTTD--------WLGTSPLHLAAQYGHFSTTEVLLRA- 56

Query: 91  PECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD 150
                      G S          P+H AA    +  +EV L+ G  +           D
Sbjct: 57  -----------GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV----NAK----D 97

Query: 151 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
                 LH A      + VEL +K GA + TQ     T   ++   G  D+  +
Sbjct: 98  MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  116 bits (293), Expect = 9e-30
 Identities = 39/218 (17%), Positives = 73/218 (33%), Gaps = 23/218 (10%)

Query: 410 VELCLKSGAKISTQ---QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKM 466
           +   L+           + +    +  A   G L++V+         ++   +  + + +
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-----EMNDPSQPNEEGI 55

Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
           T LH A       +V +LI  GA++N  D    +PL  AAS       + LV++ A I  
Sbjct: 56  TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115

Query: 527 KDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
             ++              G+      + A       L ++   + L N+     L   + 
Sbjct: 116 TTLSDGATAFEKCDPYREGY-----ADCA-----TYLADVEQSMGLMNSGAVYALWDYSA 165

Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
                   +L   E  S  +   DG   T    A+  G
Sbjct: 166 ----EFGDELSFREGESVTVLRRDGPEETDWWWAALHG 199

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  102 bits (257), Expect = 6e-25
 Identities = 38/212 (17%), Positives = 69/212 (32%), Gaps = 33/212 (15%)

Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
             + L  A   G+ + V+  +K     S    +  T +H A       IV          
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDF-------- 72

Query: 454 KLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLAAS- 507
            L+     +NS D+   TPLHCAA  +   +   L+  GA +      +  +        
Sbjct: 73  -LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPY 131

Query: 508 -RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG 566
             G       L   + ++ L +      L         +  EF +E+            G
Sbjct: 132 REGYADCATYLADVEQSMGLMNSGAVYALWD-------YSAEFGDEL--------SFREG 176

Query: 567 ACINL--KNNSNESPLHLAARYGRYNTVKKLL 596
             + +  ++   E+    AA +G+   V +  
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 88.9 bits (221), Expect = 4e-20
 Identities = 40/273 (14%), Positives = 82/273 (30%), Gaps = 77/273 (28%)

Query: 240 VQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPI 299
           ++ ++ +        + + +PL                         +L  A    ++ +
Sbjct: 1   MRSVLRKAGSPRKARRARLNPL------------------------VLLLDAALTGELEV 36

Query: 300 LLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHD 359
           +   +  K+M D  Q  E G TALH A           L+   GA++    S+G+ P+H 
Sbjct: 37  VQQAV--KEMNDPSQPNEEGITALHNAICGANYSIVDFLI-TAGANVNSPDSHGWTPLHC 93

Query: 360 AAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK 419
           AA                                            D       ++ GA 
Sbjct: 94  AASC-----------------------------------------NDTVICMALVQHGAA 112

Query: 420 I-STQQFDLSTPVHLA--CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD 476
           I +T   D +T         +G  D    + +++  +    +   ++  +  L   +  +
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADVE--QS---MGLMNSGAVYALWDYSA-E 166

Query: 477 RCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
             D + +   E   +   D  + +    AA  G
Sbjct: 167 FGDELSFREGESVTVLRRDGPEETDWWWAALHG 199

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 88.9 bits (221), Expect = 4e-20
 Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 36/237 (15%)

Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
           N    + DAA     + ++  ++         EE        G   LH+A+ G ++  V+
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE--------GITALHNAICGANYSIVD 71

Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQK-M 466
             + +GA +++      TP+H A S     I            LV     + +T      
Sbjct: 72  FLITAGANVNSPDSHGWTPLHCAASCNDTVICMA---------LVQHGAAIFATTLSDGA 122

Query: 467 TPLHCAAMFDRC--DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI 524
           T       +     D   YL D    + +++      L   ++  G   +         +
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG-DELSFREGESVTV 181

Query: 525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLH 581
           L +D           L+G        E      +  N   L   +  + +  +   H
Sbjct: 182 LRRDGPEETDWWWAALHG-------QEGY----VPRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 88.1 bits (219), Expect = 7e-20
 Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 54/227 (23%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
           N    + DAA     + ++  ++                + EG   LH+A+ G ++  V+
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMNDPSQP--------NEEGITALHNAICGANYSIVD 71

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQK-M 225
             + +GA +++      TP+H A S     I            LV     + +T      
Sbjct: 72  FLITAGANVNSPDSHGWTPLHCAASCNDTVICMA---------LVQHGAAIFATTLSDGA 122

Query: 226 TPLHCAAMFDRC--DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNK 283
           T       +     D   YL D    + +++      L   ++  G              
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG-------------- 168

Query: 284 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
                           L       + + +L+      T    AA++ 
Sbjct: 169 --------------DELSFREG--ESVTVLRRDGPEETDWWWAALHG 199

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 87.7 bits (218), Expect = 8e-20
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 49/270 (18%)

Query: 169 VELCLKSGAKISTQ---QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKM 225
           +   L+           + +    +  A   G L++V+         ++   +  + + +
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-----EMNDPSQPNEEGI 55

Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
           T LH A       +V +LI  GA++N  D    +PL  AAS               N   
Sbjct: 56  TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS--------------CNDTV 101

Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD--FDECARILVKDFG 343
                            L+Q+   I        G TA      Y   + +CA  L  D  
Sbjct: 102 IC-----MA--------LVQHGAAIFA-TTLSDGATAFEKCDPYREGYADCATYLA-DVE 146

Query: 344 ASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVH 403
            S+    S   Y + D +        E+  + GES+   R +               A  
Sbjct: 147 QSMGLMNSGAVYALWDYSAE---FGDELSFREGESVTVLRRD------GPEETDWWWAAL 197

Query: 404 GGDFKAVE-LCLKSGAKISTQQFDLSTPVH 432
            G    V         ++  Q+  +    H
Sbjct: 198 HGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 39/255 (15%), Positives = 73/255 (28%), Gaps = 67/255 (26%)

Query: 20  SSGVNTRILNNKK---QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAI 76
               + R     +     +L  A    ++ ++   +  K+M D  Q  E G TALH A  
Sbjct: 6   RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV--KEMNDPSQPNEEGITALHNAIC 63

Query: 77  YDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 136
                    L++                              A  N+             
Sbjct: 64  GANYSIVDFLIT----------------------------AGANVNSP------------ 83

Query: 137 SIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKI-STQQFDLSTPVHLA-- 193
                        D+ G  PLH A    D       ++ GA I +T   D +T       
Sbjct: 84  -------------DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP 130

Query: 194 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 253
             +G  D    + +++  +    +   ++  +  L   +  +  D + +   E   +   
Sbjct: 131 YREGYADCATYLADVE--QS---MGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRR 184

Query: 254 DKEKRSPLLLAASRG 268
           D  + +    AA  G
Sbjct: 185 DGPEETDWWWAALHG 199

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  115 bits (289), Expect = 4e-29
 Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 32/202 (15%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
             +                        +     +       +  L  +++    D+VQ +
Sbjct: 7   VSLPPGKRTNLRKTGSE---------RIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRI 56

Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 544
           I E  D ++ + E  + L  A   G  + V  LV+   N+   D +    LH        
Sbjct: 57  IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC--N 114

Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNE---SPLHLAARYGRYNTVKKLLSSERG 601
           ++     +V      + L+  GA +     S+    +        G     + L   +  
Sbjct: 115 NV-----QVC-----KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164

Query: 602 SFIINESDGEGLTPLHIASKEG 623
              +   +   +  L     + 
Sbjct: 165 ---MGIMNKGVIYALWDYEPQN 183

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  106 bits (267), Expect = 3e-26
 Identities = 26/229 (11%), Positives = 65/229 (28%), Gaps = 19/229 (8%)

Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
           G+ +L      +  +     +   G  +K         + D++       ++  +   + 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERI-AHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
                +E        G   LH+AV  G  + V+  ++ G  ++    D  TP+H A S  
Sbjct: 63  PSLPNDE--------GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114

Query: 439 ALDIVRLMFNL--QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
            + + + +                +D Q                 Q+L      + +++K
Sbjct: 115 NVQVCKFLVESGAAVFAM----TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK 170

Query: 497 EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
                L     +         ++    + +      + +          
Sbjct: 171 GVIYALWDYEPQND---DELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  104 bits (261), Expect = 2e-25
 Identities = 41/233 (17%), Positives = 75/233 (32%), Gaps = 34/233 (14%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
            G   +    +    KT    +  G  +          F+      L  +   G+F  V+
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVK---------FNPLPLALLLDSSLEGEFDLVQ 54

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 226
             +      S    +  T +H A   G  +IV+          LV     +N+ D+   T
Sbjct: 55  RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF---------LVQFGVNVNAADSDGWT 105

Query: 227 PLHCAAMFDRCDVVQYLIDEGADLNVL---DKEKRSPLLLAASRGGWKT------NGVNT 277
           PLHCAA  +   V ++L++ GA +  +   D +  +        G  +            
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165

Query: 278 RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
            I+N      L      N      + ++  D + I+   +        A + D
Sbjct: 166 GIMNKGVIYALWDYEPQND---DELPMKEGDCMTIIHREDEDEIEWWWARLND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 97.7 bits (244), Expect = 4e-23
 Identities = 28/219 (12%), Positives = 64/219 (29%), Gaps = 43/219 (19%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           +  G + L         K     +  G ++      L   +  +  +G  D+V+      
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPL-ALLLDSSLEGEFDLVQR----- 55

Query: 210 PSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
               ++      +  + + +T LH A      ++V++L+  G ++N  D +  +P     
Sbjct: 56  ----IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP----- 106

Query: 266 SRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYK-DMIDILQGGEHGRTALH 324
                                 LH A   N V +   L++    +  +            
Sbjct: 107 ----------------------LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144

Query: 325 IAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKN 363
                 + +C++ L       +        Y + D    
Sbjct: 145 EEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQ 182

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.5 bits (189), Expect = 8e-16
 Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 16/129 (12%)

Query: 495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA 554
           +   +  L         KT    + +   +         +L    L   G       ++ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLE--GEF-----DLV 53

Query: 555 AVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLT 614
                + +I      +L N+   + LH A   G    VK L+    G   +N +D +G T
Sbjct: 54  -----QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ--FGV-NVNAADSDGWT 105

Query: 615 PLHIASKEG 623
           PLH A+   
Sbjct: 106 PLHCAASCN 114

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  108 bits (272), Expect = 1e-27
 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 18/158 (11%)

Query: 467 TPLHCAAMFDRCDVVQYLID-EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
             L  AA       V+ L+  E    + L++  ++ L +    G     L L++  A+  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
           ++D +  + +H     G   +     +       + L+  GA +N+ + +   P+HLA +
Sbjct: 63  VQDTSGTSPVHDAARTG--FL-----DTL-----KVLVEHGADVNVPDGTGALPIHLAVQ 110

Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
            G    V  L +    S  ++  D  GLTPL +A + G
Sbjct: 111 EGHTAVVSFLAA---ESD-LHRRDARGLTPLELALQRG 144

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  102 bits (257), Expect = 1e-25
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 18/169 (10%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
             +  A ++G +  VR +       +LV  ++ +    T L     F    +   L+ +G
Sbjct: 4   DRLSGAAARGDVQEVRRLL----HRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQG 58

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
           A  NV D    SP+  AA  G   T+  LV + A++ + D      +HL V  G  H   
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG--HT-- 114

Query: 549 FAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
               V        L    + ++ ++    +PL LA + G  + V  L  
Sbjct: 115 ---AVV-----SFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.9 bits (219), Expect = 2e-20
 Identities = 39/193 (20%), Positives = 57/193 (29%), Gaps = 45/193 (23%)

Query: 153 GNLPLHSAVHGGDFKAV-ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
               L  A   GD + V  L  +             T + +    G+  I          
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALE------- 53

Query: 212 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
             L+      N  D    +P+H AA     D ++ L++ GAD+NV D     P+ LA   
Sbjct: 54  --LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE 111

Query: 268 GGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 327
           G                    H A     V  L          D+ +    G T L +A 
Sbjct: 112 G--------------------HTAV----VSFLA------AESDLHRRDARGLTPLELAL 141

Query: 328 IYDFDECARILVK 340
                +   IL  
Sbjct: 142 QRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 80.5 bits (200), Expect = 4e-18
 Identities = 38/195 (19%), Positives = 54/195 (27%), Gaps = 56/195 (28%)

Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
               L  AA     +  R L+             G   +                     
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-------------------- 41

Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
                          G+                  LK GA  + Q    ++PVH A   G
Sbjct: 42  -----------VMMFGST-----------AIALELLKQGASPNVQDTSGTSPVHDAARTG 79

Query: 439 ALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL 494
            LD +++         LV     +N  D     P+H A       VV +L    +DL+  
Sbjct: 80  FLDTLKV---------LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRR 129

Query: 495 DKEKRSPLLLAASRG 509
           D    +PL LA  RG
Sbjct: 130 DARGLTPLELALQRG 144

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 77.5 bits (192), Expect = 5e-17
 Identities = 38/221 (17%), Positives = 62/221 (28%), Gaps = 74/221 (33%)

Query: 226 TPLHCAAMFDRCDVVQYLID-EGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
             L  AA       V+ L+  E    + L++  ++ L +                     
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM---------------FGST 48

Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
              L              LL+             G + +H AA   F +  ++LV+    
Sbjct: 49  AIAL-------------ELLKQG--ASPNVQDTSGTSPVHDAARTGFLDTLKVLVE---- 89

Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
                        H A  N                              G LP+H AV  
Sbjct: 90  -------------HGADVNVPDG-------------------------TGALPIHLAVQE 111

Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
           G    V   L + + +  +     TP+ LA  +GA D+V +
Sbjct: 112 GHTAVVSF-LAAESDLHRRDARGLTPLELALQRGAQDLVDI 151

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 38/183 (20%), Positives = 58/183 (31%), Gaps = 34/183 (18%)

Query: 67  GRTALHIAAIY-DFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
               L  AA   D  E  R+L  E                      G   +       S+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRE------------LVHPDALNRFGKTALQVMMFG-ST 48

Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 185
                 L+ G S            D  G  P+H A   G    +++ ++ GA ++     
Sbjct: 49  AIALELLKQGASPNVQ--------DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100

Query: 186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVC---LNSTDAQKMTPLHCAAMFDRCDVVQY 242
            + P+HLA  +G   +V           L     L+  DA+ +TPL  A      D+V  
Sbjct: 101 GALPIHLAVQEGHTAVVSF---------LAAESDLHRRDARGLTPLELALQRGAQDLVDI 151

Query: 243 LID 245
           L  
Sbjct: 152 LQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 544 GHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSF 603
           G ++E         L   L       +  N   ++ L +   +G      +LL   +G+ 
Sbjct: 13  GDVQEVRR------L---LHRELVHPDALNRFGKTALQVMM-FGSTAIALELLK--QGA- 59

Query: 604 IINESDGEGLTPLHIASKEGFH 625
             N  D  G +P+H A++ GF 
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFL 81

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.7 bits (133), Expect = 4e-09
 Identities = 36/186 (19%), Positives = 54/186 (29%), Gaps = 57/186 (30%)

Query: 19  SSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 78
               V+   LN   +  L +        I L LL+             G + +H AA   
Sbjct: 23  HRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQG--ASPNVQDTSGTSPVHDAARTG 79

Query: 79  FDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 138
           F +  ++LV                             H A  N                
Sbjct: 80  FLDTLKVLVE----------------------------HGADVNVP-------------- 97

Query: 139 GCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 198
                      D  G LP+H AV  G    V   L + + +  +     TP+ LA  +GA
Sbjct: 98  -----------DGTGALPIHLAVQEGHTAVVSF-LAAESDLHRRDARGLTPLELALQRGA 145

Query: 199 LDIVRL 204
            D+V +
Sbjct: 146 QDLVDI 151

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  108 bits (272), Expect = 1e-27
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 16/161 (9%)

Query: 462 DAQKMTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
           +++    L  AA     + V+ L      +   ++  + +PL  AA       V  L+++
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
            A++  KD      LH     G  H      EVA     E L+  GA +N+ +    +PL
Sbjct: 65  GADVHAKDKGGLVPLHNACSYG--HY-----EVA-----ELLVKHGAVVNVADLWKFTPL 112

Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
           H AA  G+Y   K LL    G+    + + +G TPL +   
Sbjct: 113 HEAAAKGKYEICKLLLQ--HGA-DPTKKNRDGNTPLDLVKD 150

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 90.9 bits (227), Expect = 1e-21
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 17/175 (9%)

Query: 176 GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD 235
           GA  ++   +    +  A   G ++ V+ +  +Q           + ++ TPLH AA ++
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNC----RDIEGRQSTPLHFAAGYN 53

Query: 236 RCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLH 289
           R  VV+YL+  GAD++  DK    PL  A S G ++       +G    + +  K   LH
Sbjct: 54  RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 113

Query: 290 LATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
            A    K  I  +LLQ+    D  +    G T L +    D  +   +L  D  A
Sbjct: 114 EAAAKGKYEICKLLLQHG--ADPTKKNRDGNTPLDLVKDGDT-DIQDLLRGD-AA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 85.9 bits (214), Expect = 9e-20
 Identities = 40/190 (21%), Positives = 62/190 (32%), Gaps = 46/190 (24%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
                 L  AA     E  + L      + +        P+H AA       +E  LQ G
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
             +    +         G +PLH+A   G ++  EL +K GA +                
Sbjct: 66  ADVHAKDK--------GGLVPLHNACSYGHYEVAELLVKHGAVV---------------- 101

Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
                                 N  D  K TPLH AA   + ++ + L+  GAD    ++
Sbjct: 102 ----------------------NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 139

Query: 497 EKRSPLLLAA 506
           +  +PL L  
Sbjct: 140 DGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 71.7 bits (177), Expect = 8e-15
 Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 22/176 (12%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
           N++    L  A +   V  +  L   +  ++         T LH AA Y+       L+ 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 89  EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL 148
                        GA +      G  P+H+A      +  E+ ++ G  +          
Sbjct: 64  H------------GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV----NVA--- 104

Query: 149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
            D     PLH A   G ++  +L L+ GA  + +  D +TP+ L    G  DI  L
Sbjct: 105 -DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDL 158

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 560 ENLINLGAC-INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI 618
           + L  + +           +PLH AA Y R + V+ LL    G+  ++  D  GL PLH 
Sbjct: 25  KKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGA-DVHAKDKGGLVPLHN 81

Query: 619 ASKEG 623
           A   G
Sbjct: 82  ACSYG 86

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.9 bits (144), Expect = 2e-10
 Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 24/162 (14%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L  +   VN R +  ++   LH A   N+V ++  LLQ+    D+    + G   LH A 
Sbjct: 27  LC-TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNAC 83

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 135
            Y   E A +LV              GA +  A    + P+H+AA     +  ++ LQ G
Sbjct: 84  SYGHYEVAELLVKH------------GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131

Query: 136 ESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
                         + +GN PL      GD    +L     A
Sbjct: 132 ADPTKK--------NRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.2 bits (142), Expect = 4e-10
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 572 KNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
            N+  +  L  AA+ G   TVKKL +    S    + +G   TPLH A+   
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTV--QSVNCRDIEGRQSTPLHFAAGYN 53

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  109 bits (274), Expect = 4e-27
 Identities = 45/240 (18%), Positives = 75/240 (31%), Gaps = 37/240 (15%)

Query: 397 PLHSAVHGGDFKAVELCLKS--------GAKISTQQFDLSTPVHLA---CSQGALDIVRL 445
            L S V  G  + +   L+              T+     T +  A      G    +  
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 446 MFNLQPSEKLVCL------NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK- 498
           +  +                    Q  + LH A        V+ L++ GAD+++    + 
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 499 ------------RSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNGG 543
                         PL LAA    W  V  L+ N    A++   D     +LH LV+   
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184

Query: 544 GHIKEFAEEVAAVFL----GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSE 599
              +  A  +         G  L        + N+   +PL LAA+ G+    + +L  E
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 96.8 bits (241), Expect = 1e-22
 Identities = 38/250 (15%), Positives = 72/250 (28%), Gaps = 40/250 (16%)

Query: 36  LHLATELNKVPILLILLQY------KDMIDILQGGEHGRTALHIAAIYDFD---ECARIL 86
           L           L  LL+Y               G  G+T L  A +   D    C   L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 87  VSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI-----GCS 141
           +    +          A        G+  +H A +  S + +++ ++ G  +     G  
Sbjct: 66  LQIDKDSG-NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG---AKISTQQFDLSTPVHLACSQGA 198
            ++        G LPL  A     +  V   L++    A +       +T +H       
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV---- 180

Query: 199 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
                             + + ++ + + L          +   L        + + +  
Sbjct: 181 ------------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222

Query: 259 SPLLLAASRG 268
           +PL LAA  G
Sbjct: 223 TPLKLAAKEG 232

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 94.9 bits (236), Expect = 5e-22
 Identities = 38/264 (14%), Positives = 77/264 (29%), Gaps = 49/264 (18%)

Query: 288 LHLATELNKVPILLILLQY------KDMIDILQGGEHGRTALHIAAIYDFD---ECARIL 338
           L           L  LL+Y               G  G+T L  A +   D    C   L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 339 V----------KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI-----GCSR 383
           +              A        G+  +H A +  S + +++ ++ G  +     G   
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 384 EEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG---AKISTQQFDLSTPVHLACSQGAL 440
           ++        G LPL  A     +  V   L++    A +       +T +H        
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV----- 180

Query: 441 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 500
                            + + ++ + + L          +   L        + + +  +
Sbjct: 181 -----------------MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223

Query: 501 PLLLAASRGGWKTVLTLVRNKANI 524
           PL LAA  G  +    +++ + + 
Sbjct: 224 PLKLAAKEGKIEIFRHILQREFSG 247

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 88.3 bits (219), Expect = 1e-19
 Identities = 40/310 (12%), Positives = 72/310 (23%), Gaps = 93/310 (30%)

Query: 156 PLHSAVHGGDFKAVELCLKS--------GAKISTQQFDLSTPVHLA---CSQGALDIVRL 204
            L S V  G  + +   L+              T+     T +  A      G    +  
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 205 MFNLQPSEKLVCL------NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
           +  +                    Q  + LH A        V+ L++ GAD+++    + 
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 259 SPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEH 318
                                                                       
Sbjct: 125 FQKHQGT-------------------------------------------------CFYF 135

Query: 319 GRTALHIAAIYDFDECARILVK--DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
           G   L +AA     +    L++     ASL+   S G   +H     A +          
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS--------- 186

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
                             N  L   ++ G  +       +            TP+ LA  
Sbjct: 187 ----------------PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230

Query: 437 QGALDIVRLM 446
           +G ++I R +
Sbjct: 231 EGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 32/214 (14%), Positives = 60/214 (28%), Gaps = 49/214 (22%)

Query: 3   LLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQY-------- 54
           LL +  D+ N   L+             +  + LH+A E   +  + +L++         
Sbjct: 65  LLQIDKDSGNPKPLV----NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRA 120

Query: 55  ---KDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSN 111
                          G   L +AA     +    L+    +          ASL+   S 
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ---------PASLEATDSL 171

Query: 112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVEL 171
           G   +H     A                          ++  N  L   ++ G  +    
Sbjct: 172 GNTVLHALVMIAD-------------------------NSPENSALVIHMYDGLLQMGAR 206

Query: 172 CLKSGAKISTQQFDLSTPVHLACSQGALDIVRLM 205
              +            TP+ LA  +G ++I R +
Sbjct: 207 LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  107 bits (268), Expect = 6e-27
 Identities = 26/175 (14%), Positives = 49/175 (28%), Gaps = 13/175 (7%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
             V  A   G  +    +F     +K              L       R  +  +LI++G
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKES--VLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLT------LVRNKANILLKDINRRNILHLLVLNG 542
           AD+    KE  +        GG     T       +   A+I       + ++   + N 
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

Query: 543 GGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
                E       +         G  + +K+    + L    R  +   +K +  
Sbjct: 126 FVDENEMIPLYKLI-----FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  101 bits (253), Expect = 7e-25
 Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 19/176 (10%)

Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA-----SRGGWKTVLTLVR 519
           +   +  AAM    +    L ++G +    +   +S +L            +K  + L+ 
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 520 NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESP 579
             A+I  +      +   L   GG  I    E        +  +  GA I       +  
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELC------KIFLEKGADITALYKPYKIV 117

Query: 580 LHLAARYGRYNTVK-----KLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSI 630
           +         +  +     KL+ S+ G   +   D  GLT L    +     ++ +
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGL-QLLIKDKWGLTALEFVKRCQKPIALKM 172

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 87.0 bits (216), Expect = 5e-20
 Identities = 23/190 (12%), Positives = 50/190 (26%), Gaps = 19/190 (10%)

Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
           + Y  +  AA   + +      + G     S  +   L+       L +      +K   
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDV-----LRNNNDEARYKISM 59

Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 467
             +  GA I ++  + +T        G  DI       +  +  +     + +       
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITG---TTELCKIFLEKGADITALYKPYKI 116

Query: 468 PLHCAAMFDRCDVVQ-------YLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
            +         D  +            G  L + DK   + L           +  +   
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

Query: 521 KANILLKDIN 530
                LK+ +
Sbjct: 177 IKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 87.0 bits (216), Expect = 5e-20
 Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 20/174 (11%)

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
             V  A   G  +    +F     +K              L       R  +  +LI++G
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKES--VLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 248 ADLNVLDKEKRSPLLLAASRGGWKT------------NGVNTRILNNKKQAVLHLATELN 295
           AD+    KE  +        GG                G +   L    + V+       
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

Query: 296 KVPILLILLQYKDMI-----DILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
            V    ++  YK +       +L   + G TAL            +++  D+  
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME-DYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 28/189 (14%), Positives = 54/189 (28%), Gaps = 20/189 (10%)

Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKR---ACSNGYYPIHDAAKNASSKTMEVFLQF 375
               +  AA+    E    L +  G   K      +  Y  + +    A  K     +  
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEK-GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 376 GESIGCSREEMISLFAAEGNLPLHSAVHGG------DFKAVELCLKSGAKISTQQFDLST 429
           G  I    +E        G         GG        +  ++ L+ GA I+        
Sbjct: 65  GADIKSRTKE--------GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI 116

Query: 430 PVHLACSQGALDIVRLMFNLQP--SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 487
            V        +D   ++   +   S+  + L   D   +T L       +   ++ + D 
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

Query: 488 GADLNVLDK 496
               N+ + 
Sbjct: 177 IKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 76.3 bits (188), Expect = 3e-16
 Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 31/200 (15%)

Query: 67  GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR---ACSNGYYPIHDAAKNA 123
               +  AA+    E    L  +            G   K      +  Y  + +    A
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEK------------GYEDKESVLKSNILYDVLRNNNDEA 53

Query: 124 SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG------DFKAVELCLKSGA 177
             K     +  G  I             EG         GG        +  ++ L+ GA
Sbjct: 54  RYKISMFLINKGADIKSR--------TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105

Query: 178 KISTQQFDLSTPVHLACSQGALDIVRLMFNLQP--SEKLVCLNSTDAQKMTPLHCAAMFD 235
            I+         V        +D   ++   +   S+  + L   D   +T L       
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

Query: 236 RCDVVQYLIDEGADLNVLDK 255
           +   ++ + D     N+ + 
Sbjct: 166 KPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.8 bits (179), Expect = 4e-15
 Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 16/133 (12%)

Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAA 555
             +   +  AA  G ++  L L         K+   ++ +   VL       E   +++ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNN--DEARYKIS- 58

Query: 556 VFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI-----INESDG 610
                 LIN GA I  +     +      + G  +        +   F+     I     
Sbjct: 59  ----MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKI--FLEKGADITALYK 112

Query: 611 EGLTPLHIASKEG 623
                +       
Sbjct: 113 PYKIVVFKNIFNY 125

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  104 bits (263), Expect = 1e-26
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 22/166 (13%)

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
            S+       L  AA   R + V+ L++ GA+ N  +   R P+ +    G  +    L+
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL 64

Query: 519 RNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
            + A     D       +H       G +     +   V     L   GA +++++    
Sbjct: 65  LHGAEPNCADPATLTRPVHDAARE--GFL-----DTLVV-----LHRAGARLDVRDAWGR 112

Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
            P+ LA   G  +  + L +              G     I + EG
Sbjct: 113 LPVDLAEELGHRDVARYLRA--------AAGGTRGSNHARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 94.5 bits (236), Expect = 6e-23
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 26/180 (14%)

Query: 414 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA 473
           ++  A  S +    +  +  A ++G ++ VR +      E     N+ ++    P+    
Sbjct: 1   MEPAAGSSME--PSADWLATAAARGRVEEVRALL-----EAGANPNAPNSYGRRPIQVMM 53

Query: 474 MFDRCDVVQYLIDEGADLNVLDKEKR-SPLLLAASRGGWKTVLTLVRNKANILLKDINRR 532
           M     V + L+  GA+ N  D      P+  AA  G   T++ L R  A + ++D   R
Sbjct: 54  M-GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR 112

Query: 533 NILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTV 592
             + L    G  H      +VA       L          N        + A  G  +  
Sbjct: 113 LPVDLAEELG--H-----RDVA-----RYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 90.2 bits (225), Expect = 2e-21
 Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 20/155 (12%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
                L +A   G  + V   L++GA  +        P+ +    G+  +  L       
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAEL------- 62

Query: 453 EKLVC----LNSTDAQKMT-PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
             L+      N  D   +T P+H AA     D +  L   GA L+V D   R P+ LA  
Sbjct: 63  --LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120

Query: 508 RGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 542
            G       L               N   +    G
Sbjct: 121 LGHRDVARYLRAAAG-----GTRGSNHARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 82.5 bits (205), Expect = 1e-18
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
                  L +A   G  + V   L++GA  +        P+ +    G+  +  L     
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAEL----- 62

Query: 210 PSEKLVC----LNSTDAQKMT-PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA 264
               L+      N  D   +T P+H AA     D +  L   GA L+V D   R P+ LA
Sbjct: 63  ----LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118

Query: 265 ASRG 268
              G
Sbjct: 119 EELG 122

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.0 bits (201), Expect = 3e-18
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 20/145 (13%)

Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 544
           ++  A  +   +     L  AA+RG  + V  L+   AN    +   R  + ++++   G
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM---G 55

Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNE-SPLHLAARYGRYNTVKKLLSSERGSF 603
                   VA     E L+  GA  N  + +    P+H AAR G  +T+  L     G+ 
Sbjct: 56  SA-----RVA-----ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR--AGA- 102

Query: 604 IINESDGEGLTPLHIASKEGFHYSV 628
            ++  D  G  P+ +A + G H  V
Sbjct: 103 RLDVRDAWGRLPVDLAEELG-HRDV 126

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 80.2 bits (199), Expect = 7e-18
 Identities = 38/205 (18%), Positives = 54/205 (26%), Gaps = 65/205 (31%)

Query: 65  EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
           E     L  AA     E  R L+              GA+     S G  PI        
Sbjct: 10  EPSADWLATAAARGRVEEVRALLEA------------GANPNAPNSYGRRPIQVMMMG-- 55

Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ-Q 183
                                             + V        EL L  GA+ +    
Sbjct: 56  ---------------------------------SARV-------AELLLLHGAEPNCADP 75

Query: 184 FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
             L+ PVH A  +G LD + ++           L+  DA    P+  A      DV +YL
Sbjct: 76  ATLTRPVHDAAREGFLDTLVVLH-----RAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

Query: 244 IDEGADLNVLDKEKRSPLLLAASRG 268
                          +   + A+ G
Sbjct: 131 RAAAGGTR-----GSNHARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 79.8 bits (198), Expect = 9e-18
 Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 16/153 (10%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT----- 272
            S+       L  AA   R + V+ L++ GA+ N  +   R P+ +    G  +      
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL 64

Query: 273 -NGVNTRILNNKKQAV-LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
            +G      +       +H A     +  L++L +      +      GR  + +A    
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG--ARLDVRDAWGRLPVDLAEELG 122

Query: 331 FDECARILVKDFGASLKRACSNGYYPIHDAAKN 363
             + AR L            + G       A  
Sbjct: 123 HRDVARYLRA------AAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 33/201 (16%), Positives = 57/201 (28%), Gaps = 47/201 (23%)

Query: 244 IDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLIL 303
           ++  A  +   +     L  AA+RG                     +         +  L
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARG--------------------RVE-------EVRAL 31

Query: 304 LQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY-YPIHDAAK 362
           L+     +      +GR  + +         A +L+   GA    A       P+HDAA+
Sbjct: 32  LEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAAR 87

Query: 363 NASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKIST 422
                T+ V  + G  +            A G LP+  A   G          +      
Sbjct: 88  EGFLDTLVVLHRAGARLDVR--------DAWGRLPVDLAEELGHRDVARYLRAAAGGT-- 137

Query: 423 QQFDLSTPVHLACSQGALDIV 443
                S    +  ++G  DI 
Sbjct: 138 ---RGSNHARIDAAEGPSDIP 155

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  109 bits (273), Expect = 3e-26
 Identities = 44/271 (16%), Positives = 91/271 (33%), Gaps = 13/271 (4%)

Query: 358 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG 417
           HD   +  S  +++       +    E+ + L A      L   +     +         
Sbjct: 32  HDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAF-----LQRLLFPEIQEMPTSLNNDS 86

Query: 418 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 477
           +  +++    +           L  V    +  P+ +L      D    TPLH       
Sbjct: 87  SNRNSEGGSSNQQQQHVSFDSLLQEVN---DAFPNTQLNLNIPVDEHGNTPLHWLTSIAN 143

Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRG---GWKTVLTLVR-NKANILLKDINRRN 533
            ++V++L+  G++    D    S L+ A          T   L+      ++L+D   R 
Sbjct: 144 LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRT 203

Query: 534 ILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVK 593
           ILH +++  G      A +     L   ++           + +          R +++ 
Sbjct: 204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL 263

Query: 594 KLLSS-ERGSFIINESDGEGLTPLHIASKEG 623
           + L      + ++N  D  G T L+IA++ G
Sbjct: 264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  103 bits (259), Expect = 2e-24
 Identities = 41/273 (15%), Positives = 83/273 (30%), Gaps = 30/273 (10%)

Query: 5   SVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGG 64
            +  + +     + + S        +  Q   H++ +     +       +  ++I    
Sbjct: 70  LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI-PVD 128

Query: 65  EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
           EHG T LH        E  + LV              G++     + G   +  A K+ +
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVK------------HGSNRLYGDNMGESCLVKAVKSVN 176

Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKA------------VELC 172
           +     F    + +       + L D+     LH  +                   +   
Sbjct: 177 NYDSGTFEALLDYLYPC----LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI 232

Query: 173 LKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA 232
           +K   +      +         +    D +    +L+       LN+ D+   T L+ AA
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN-MLNAQDSNGDTCLNIAA 291

Query: 233 MFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
                 +V  L+D GAD  + +K    P+   A
Sbjct: 292 RLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  103 bits (257), Expect = 3e-24
 Identities = 33/230 (14%), Positives = 75/230 (32%), Gaps = 17/230 (7%)

Query: 399 HSAVHGGDFKAVELCLKSGAKISTQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC 457
           H +      +  +    +   ++       +TP+H   S   L++V+ +     +     
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN----- 156

Query: 458 LNSTDAQKMTPLHCAAMFDRC----DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
               D    + L  A               L      L + D   R+ L       G   
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 216

Query: 514 VLTLVRNKANILLKDINRRNILHLLVLNGGG----HIKEFAEEVAAVFLGENLINLGACI 569
                +   +IL+  I ++    +           + K    + + +   +    +   +
Sbjct: 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276

Query: 570 NLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
           N ++++ ++ L++AAR G  + V  LL    G+     ++  GL P+   
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLD--YGAD-PFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 99.3 bits (247), Expect = 6e-23
 Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 33/246 (13%)

Query: 280 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
             +  Q   H++ +     +       +  ++I    EHG T LH        E  + LV
Sbjct: 93  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAA------- 392
              G++     + G   +  A K+ ++     F           E ++            
Sbjct: 152 -KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF-----------EALLDYLYPCLILEDS 199

Query: 393 EGNLPLHSAVHGGDFKA------------VELCLKSGAKISTQQFDLSTPVHLACSQGAL 440
                LH  +                   +   +K   +      +         +    
Sbjct: 200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 259

Query: 441 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 500
           D +    +L+       LN+ D+   T L+ AA      +V  L+D GAD  + +K    
Sbjct: 260 DSILENLDLKWIIAN-MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLR 318

Query: 501 PLLLAA 506
           P+   A
Sbjct: 319 PVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 97.8 bits (243), Expect = 2e-22
 Identities = 49/330 (14%), Positives = 92/330 (27%), Gaps = 50/330 (15%)

Query: 117 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG 176
           HD   +  S  +++       +    E+ +     +    L   +     +         
Sbjct: 32  HDLTSDFLSSPLKIMKALPSPVVNDNEQKM-----KLEAFLQRLLFPEIQEMPTSLNNDS 86

Query: 177 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 236
           +  +++    +           L  V    +  P+ +L      D    TPLH       
Sbjct: 87  SNRNSEGGSSNQQQQHVSFDSLLQEVN---DAFPNTQLNLNIPVDEHGNTPLHWLTSIAN 143

Query: 237 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNK 296
            ++V++L+  G++    D    S L+ A                NN          +   
Sbjct: 144 LELVKHLVKHGSNRLYGDNMGESCLVKAVKSV------------NNY---------DSGT 182

Query: 297 VPILLILLQYKDMIDILQGGEHGRTALHIAAI------------YDFDECARILVKDFGA 344
              LL  L       ++      RT LH   I            Y  D     +VK    
Sbjct: 183 FEALLDYLY----PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK-QN 237

Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
              ++ +N      +        ++   L     I      M++   + G+  L+ A   
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA----NMLNAQDSNGDTCLNIAARL 293

Query: 405 GDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
           G+   V+  L  GA           PV   
Sbjct: 294 GNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 87.4 bits (216), Expect = 7e-19
 Identities = 38/283 (13%), Positives = 76/283 (26%), Gaps = 36/283 (12%)

Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
                L      +  E    L  D         S+     H +  +   +  + F     
Sbjct: 62  KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 121

Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
           ++    +E        GN PLH      + + V+  +K G+          + +  A   
Sbjct: 122 NLNIPVDE-------HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS 174

Query: 438 GALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCD------------VVQYLI 485
                      L       CL   D+   T LH   +                 ++ +++
Sbjct: 175 VNNYDSGTFEALL-DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233

Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL----KDINRRNILHLLVLN 541
            +          ++       +     ++L  +  K  I      +D N    L++    
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
           G        +          L++ GA   + N S   P+   A
Sbjct: 294 GN---ISIVDA---------LLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 72.4 bits (177), Expect = 6e-14
 Identities = 24/231 (10%), Positives = 68/231 (29%), Gaps = 30/231 (12%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
              +   +N  + +      LH  T +  + ++  L+++    + L G   G + L  A 
Sbjct: 116 FPNTQLNLNIPV-DEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAV 172

Query: 76  IYD---FDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT----- 127
                        L+     C  ++++D         S     +H     +         
Sbjct: 173 KSVNNYDSGTFEALLDYLYPC--LILED---------SMNRTILHHIIITSGMTGCSAAA 221

Query: 128 ---MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
              +++ + +         +  +          +        + ++L       ++ Q  
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281

Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFD 235
           +  T +++A   G + IV  + +             +   + P+   A  +
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGAD-----PFIANKSGLRPVDFGAGLE 327

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 558 LGENLINLGACINLK-NNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPL 616
           + +   N    +N+  +    +PLH          VK L+    GS      D  G + L
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK--HGS-NRLYGDNMGESCL 168

Query: 617 HIASKEGFHYSVSIF 631
             A K   +Y    F
Sbjct: 169 VKAVKSVNNYDSGTF 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  106 bits (267), Expect = 5e-26
 Identities = 47/244 (19%), Positives = 85/244 (34%), Gaps = 44/244 (18%)

Query: 397 PLHSAVHGGDFKA----VELCLKSGAKISTQQFDLS----TPVHLA---CSQGALDIVRL 445
            L   V  G        +   L    +++ ++F       T +  A    S G  D + +
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 446 MF----NLQPSEKLV--CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEK- 498
           +           + +         +  T LH A        V+ L+++GAD++   + + 
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127

Query: 499 -------------RSPLLLAASRGGWKTVLTLVRN---KANILLKDINRRNILHLLVLNG 542
                          PL LAA       V  L  N   +A++  +D     +LH LV   
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187

Query: 543 GGHIKEFAEEVAAVFLGENLINLGACIN-------LKNNSNESPLHLAARYGRYNTVKKL 595
               +E  + V  +   + L+   A +        L NN   SPL +AA+ G+    + +
Sbjct: 188 DNT-RENTKFVTKM--YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

Query: 596 LSSE 599
           +  E
Sbjct: 245 IRRE 248

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 82.9 bits (205), Expect = 7e-18
 Identities = 40/257 (15%), Positives = 78/257 (30%), Gaps = 46/257 (17%)

Query: 156 PLHSAVHGGDFKA----VELCLKSGAKISTQQFDLS----TPVHLA---CSQGALDIVRL 204
            L   V  G        +   L    +++ ++F       T +  A    S G  D + +
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 205 MF----NLQPSEKLV--CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
           +           + +         +  T LH A        V+ L+++GAD++   +   
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR--- 124

Query: 259 SPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQY-KDMIDILQGGE 317
                     G      +        +  L LA   N+  I+  L +      D+ +   
Sbjct: 125 ----------GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS 174

Query: 318 HGRTALHIAAIY--DFDECARILVKDF------GASLKRACS-------NGYYPIHDAAK 362
            G T LH       +  E  + + K +       A L    +       +G  P+  AAK
Sbjct: 175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234

Query: 363 NASSKTMEVFLQFGESI 379
                  +  ++   + 
Sbjct: 235 TGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 80.6 bits (199), Expect = 4e-17
 Identities = 32/213 (15%), Positives = 69/213 (32%), Gaps = 24/213 (11%)

Query: 62  QGGEHGRTALHIAAI---YDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD 118
           +    G+T L  A +      ++   IL+    +    M +   +  +     G   +H 
Sbjct: 41  REPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG-NMREFINSPFRDVYYRGQTALHI 99

Query: 119 AAKNASSKTMEVFLQFGESI------GCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
           A +      +E+ ++ G  +         + +    +   G LPL  A        V   
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 173 LKSG---AKISTQQFDLSTPVHLA-----CSQGALDIVRLMFNL------QPSEKLVCLN 218
            ++G   A +  Q    +T +H        ++     V  M++L      +         
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219

Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN 251
             +   ++PL  AA   +  + Q++I       
Sbjct: 220 LLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 28/193 (14%), Positives = 46/193 (23%), Gaps = 48/193 (24%)

Query: 467 TPLHCAAMFDRC----DVVQYLIDEGADLNVLDKEKRS----PLLLAASRG--------- 509
             L              ++ +L+     L   +  + S     L  A             
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 510 -----GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN 564
                  KT        +         +  LH+ +     H  E             L+ 
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVEL------------LVE 114

Query: 565 LGACINLKNNSN--------------ESPLHLAARYGRYNTVKKLLSSERGSFIINESDG 610
            GA ++ +                  E PL LAA   + + V  L  +      +   D 
Sbjct: 115 KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS 174

Query: 611 EGLTPLHIASKEG 623
            G T LH      
Sbjct: 175 RGNTVLHALVAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 33/204 (16%)

Query: 3   LLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQ--------- 53
           LL +     N    I        R +  + Q  LH+A E      + +L++         
Sbjct: 68  LLDIAEKTGNMREFI----NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123

Query: 54  ---YKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS 110
              +    D       G   L +AA  +       L     +   +  +D         S
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD---------S 174

Query: 111 NGYYPIHDAA--KNASSKTMEVFLQFGESI------GCSREEMISLFDAEGNLPLHSAVH 162
            G   +H      + + +  +   +  + +            + +L + +G  PL  A  
Sbjct: 175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234

Query: 163 GGDFKAVELCLKSGAKISTQQFDL 186
            G     +  ++     +      
Sbjct: 235 TGKIGIFQHIIRREIADAAAHHHH 258

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 98.6 bits (247), Expect = 1e-24
 Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 12/132 (9%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
            TPLH AA     +VV+ L++ GAD+N  DK  R+PL LAA  G  + V  L+   A++ 
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
            KD N R  LHL   N  GH+     EV      + L+  GA +N K+ +  +PLHLAAR
Sbjct: 63  AKDKNGRTPLHLAARN--GHL-----EVV-----KLLLEAGADVNAKDKNGRTPLHLAAR 110

Query: 586 YGRYNTVKKLLS 597
            G    VK LL 
Sbjct: 111 NGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 76.2 bits (189), Expect = 7e-17
 Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 44/158 (27%)

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYL 243
           TP+HLA   G L++V+L         L+     +N+ D    TPLH AA     +VV+ L
Sbjct: 4   TPLHLAARNGHLEVVKL---------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 244 IDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLAT-ELNKVPILLI 302
           ++ GAD+N  DK  R+PL LAA  G                    HL   +L        
Sbjct: 55  LEAGADVNAKDKNGRTPLHLAARNG--------------------HLEVVKL-------- 86

Query: 303 LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
           LL+     D+    ++GRT LH+AA     E  ++L++
Sbjct: 87  LLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 55/176 (31%)

Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
           +GRT LH+AA     E  ++L+             G      A  NA  K          
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-----------EAG------ADVNAKDK---------- 33

Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
                           G  PLH A   G  + V+L L++GA ++ +  +  TP+HLA   
Sbjct: 34  ---------------NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78

Query: 438 GALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
           G L++V+L         L+     +N+ D    TPLH AA     +VV+ L++ GA
Sbjct: 79  GHLEVVKL---------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.5 bits (182), Expect = 7e-16
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 21/142 (14%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
           NG  P+H AA+N   + +++ L      G          D  G  PLH A   G  + V+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL----EAGADVNAK----DKNGRTPLHLAARNGHLEVVK 52

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMT 226
           L L++GA ++ +  +  TP+HLA   G L++V+L         L+     +N+ D    T
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL---------LLEAGADVNAKDKNGRT 103

Query: 227 PLHCAAMFDRCDVVQYLIDEGA 248
           PLH AA     +VV+ L++ GA
Sbjct: 104 PLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 64.7 bits (159), Expect = 7e-13
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
           + L+  GA +N K+ +  +PLHLAAR G    VK LL    G+  +N  D  G TPLH+A
Sbjct: 19  KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGA-DVNAKDKNGRTPLHLA 75

Query: 620 SKEG 623
           ++ G
Sbjct: 76  ARNG 79

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 51.2 bits (124), Expect = 4e-08
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 22/142 (15%)

Query: 36  LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
           LHLA     + ++ +LL+     D+    ++GRT LH+AA     E  ++L+        
Sbjct: 6   LHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA------ 57

Query: 96  IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNL 155
                 GA +     NG  P+H AA+N   + +++ L      G          D  G  
Sbjct: 58  ------GADVNAKDKNGRTPLHLAARNGHLEVVKLLL----EAGADVNAK----DKNGRT 103

Query: 156 PLHSAVHGGDFKAVELCLKSGA 177
           PLH A   G  + V+L L++GA
Sbjct: 104 PLHLAARNGHLEVVKLLLEAGA 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 98.6 bits (247), Expect = 1e-24
 Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 48/163 (29%)

Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
           T+ +  T LH A++      V+YL+  G+D NV D    +PL  A + G           
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG----------- 54

Query: 521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPL 580
                          HL              +V      E L+   A +N     N+SPL
Sbjct: 55  ---------------HL--------------KVV-----ELLLQHKALVNTTGYQNDSPL 80

Query: 581 HLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           H AA+ G  + VK LLS   G+   N  +  GL P+     E 
Sbjct: 81  HDAAKNGHVDIVKLLLS--YGA-SRNAVNIFGLRPVDYTDDES 120

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 94.4 bits (236), Expect = 4e-23
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
            LH A   GD  +VE  L++G+  + +     TP+H AC+ G L +V L         L+
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL---------LL 63

Query: 457 ----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
                +N+T  Q  +PLH AA     D+V+ L+  GA  N ++     P+          
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS 123

Query: 513 TVLTLVRNKAN 523
            +L   +N+++
Sbjct: 124 LLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 90.2 bits (225), Expect = 1e-21
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 13/123 (10%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           +  G   LH A   GD  +VE  L++G+  + +     TP+H AC+ G L +V L     
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL----- 61

Query: 210 PSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
               L+     +N+T  Q  +PLH AA     D+V+ L+  GA  N ++     P+    
Sbjct: 62  ----LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117

Query: 266 SRG 268
              
Sbjct: 118 DES 120

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 82.5 bits (205), Expect = 6e-19
 Identities = 31/174 (17%), Positives = 49/174 (28%), Gaps = 58/174 (33%)

Query: 428 STPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQY 483
            T +H+A  +G +  V           L+      N  D    TPLH A       VV+ 
Sbjct: 11  ETLLHIASIKGDIPSVEY---------LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 484 LIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG 543
           L+   A +N    +  SPL  AA  G                          H+      
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNG--------------------------HV------ 89

Query: 544 GHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
                   ++      + L++ GA  N  N     P+         + +     
Sbjct: 90  --------DIV-----KLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.5 bits (192), Expect = 4e-17
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 8/127 (6%)

Query: 220 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------N 273
           T+ +  T LH A++      V+YL+  G+D NV D    +PL  A + G  K       +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 274 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE 333
                    +  + LH A +   V I+ +LL Y            G   +          
Sbjct: 66  KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG--ASRNAVNIFGLRPVDYTDDESMKS 123

Query: 334 CARILVK 340
              +  K
Sbjct: 124 LLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 70.1 bits (173), Expect = 1e-14
 Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 55/178 (30%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
             G T LHIA+I         L++                 + +  N             
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQ-----------------NGSDPNVKDH--------- 41

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
                            G  PLH A + G  K VEL L+  A ++T  +   +P+H A  
Sbjct: 42  ----------------AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK 85

Query: 437 QGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD 490
            G +DIV+L         L+      N+ +   + P+          ++       + 
Sbjct: 86  NGHVDIVKL---------LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 68.2 bits (168), Expect = 6e-14
 Identities = 34/189 (17%), Positives = 55/189 (29%), Gaps = 66/189 (34%)

Query: 65  EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
             G T LHIA+I         L+                             + +  N  
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQ----------------------------NGSDPNVK 39

Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
                                    D  G  PLH A + G  K VEL L+  A ++T  +
Sbjct: 40  -------------------------DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY 74

Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVV 240
              +P+H A   G +DIV+L         L+      N+ +   + P+          ++
Sbjct: 75  QNDSPLHDAAKNGHVDIVKL---------LLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125

Query: 241 QYLIDEGAD 249
                  + 
Sbjct: 126 LLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 16/102 (15%)

Query: 522 ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLH 581
            +    +     +LH+  + G   I             E L+  G+  N+K+++  +PLH
Sbjct: 2   IDPF-TNHRGETLLHIASIKG--DI-----PSV-----EYLLQNGSDPNVKDHAGWTPLH 48

Query: 582 LAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
            A  +G    V+ LL     + ++N +  +  +PLH A+K G
Sbjct: 49  EACNHGHLKVVELLLQ--HKA-LVNTTGYQNDSPLHDAAKNG 87

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 25/159 (15%)

Query: 23  VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 82
             T   N++ + +LH+A+    +P +  LLQ     D       G T LH A  +   + 
Sbjct: 4   PFT---NHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKV 58

Query: 83  ARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR 142
             +L+               A +         P+HDAAKN     +++ L +G S     
Sbjct: 59  VELLLQH------------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR---- 102

Query: 143 EEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIST 181
               +  +  G  P+           + L  K+ +  ++
Sbjct: 103 ----NAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.7 bits (146), Expect = 5e-11
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
             T   N++ + +LH+A+    +P +  LLQ     D       G T LH A  +   + 
Sbjct: 4   PFT---NHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKV 58

Query: 335 ARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
             +L++   A +         P+HDAAKN     +++ L +G S               G
Sbjct: 59  VELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI--------FG 109

Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKIST 422
             P+           + L  K+ +  ++
Sbjct: 110 LRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.0 bits (144), Expect = 9e-11
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 566 GACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           G      N+  E+ LH+A+  G   +V+ LL    GS   N  D  G TPLH A   G
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQ--NGS-DPNVKDHAGWTPLHEACNHG 54

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 16/118 (13%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L+   +G +  + ++     LH A     + ++ +LLQ+K    +   G    + LH AA
Sbjct: 29  LL--QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK--ALVNTTGYQNDSPLHDAA 84

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 133
                +  ++L+S             GAS       G  P+      +    + +  +
Sbjct: 85  KNGHVDIVKLLLSY------------GASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 96.4 bits (241), Expect = 8e-24
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 14/140 (10%)

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           +         L  AA   + + V+ L++ GAD N L++  R P+ +    G  +    L+
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLL 64

Query: 519 RNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
            + A     D       +H       G +     +   V     L   GA +++ +    
Sbjct: 65  LHGAEPNCADPATLTRPVHDAARE--GFL-----DTLVV-----LHRAGARLDVCDAWGR 112

Query: 578 SPLHLAARYGRYNTVKKLLS 597
            P+ LA   G  +  + L +
Sbjct: 113 LPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 17/137 (12%)

Query: 488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
              +++L     + L  AA+RG  +TV  L+   A+    +   R  + ++++   G   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM---GSA- 57

Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNE-SPLHLAARYGRYNTVKKLLSSERGSFIIN 606
               +VA     E L+  GA  N  + +    P+H AAR G  +T+  L     G+  ++
Sbjct: 58  ----QVA-----ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR--AGA-RLD 105

Query: 607 ESDGEGLTPLHIASKEG 623
             D  G  P+ +A ++G
Sbjct: 106 VCDAWGRLPVDLAEEQG 122

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 85.2 bits (212), Expect = 6e-20
 Identities = 31/136 (22%), Positives = 49/136 (36%), Gaps = 15/136 (11%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
             +  L +A   G  + V   L++GA  +        P+ +    G+  +  L       
Sbjct: 11  SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAEL------- 62

Query: 453 EKLVC----LNSTDAQKMT-PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 507
             L+      N  D   +T P+H AA     D +  L   GA L+V D   R P+ LA  
Sbjct: 63  --LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE 120

Query: 508 RGGWKTVLTLVRNKAN 523
           +G       L     +
Sbjct: 121 QGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 77.1 bits (191), Expect = 5e-17
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT----- 272
           +         L  AA   + + V+ L++ GAD N L++  R P+ +    G  +      
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLL 64

Query: 273 -NGVNTRILNNKKQAV-LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
            +G      +       +H A     +  L++L +      +      GR  + +A    
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG--ARLDVCDAWGRLPVDLAEEQG 122

Query: 331 FDECARILVK 340
             + AR L  
Sbjct: 123 HRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.9 bits (188), Expect = 1e-16
 Identities = 36/181 (19%), Positives = 49/181 (27%), Gaps = 49/181 (27%)

Query: 311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTME 370
            I   G      L  AA     E  R L+ + GA        G  PI             
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLL-EAGADPNALNRFGRRPIQVMMMG------- 55

Query: 371 VFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST- 429
                                        + V        EL L  GA+ +       T 
Sbjct: 56  ----------------------------SAQV-------AELLLLHGAEPNCADPATLTR 80

Query: 430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
           PVH A  +G LD + ++           L+  DA    P+  A      D+ +YL     
Sbjct: 81  PVHDAAREGFLDTLVVLH-----RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

Query: 490 D 490
           D
Sbjct: 136 D 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 73.6 bits (182), Expect = 8e-16
 Identities = 36/192 (18%), Positives = 48/192 (25%), Gaps = 60/192 (31%)

Query: 59  DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHD 118
            I   G      L  AA     E  R L+              GA        G  PI  
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEA------------GADPNALNRFGRRPIQV 51

Query: 119 AAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK 178
                                                   + V        EL L  GA+
Sbjct: 52  MMMG-----------------------------------SAQV-------AELLLLHGAE 69

Query: 179 ISTQQFDLST-PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRC 237
            +       T PVH A  +G LD + ++           L+  DA    P+  A      
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLH-----RAGARLDVCDAWGRLPVDLAEEQGHR 124

Query: 238 DVVQYLIDEGAD 249
           D+ +YL     D
Sbjct: 125 DIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 57.5 bits (140), Expect = 3e-10
 Identities = 29/173 (16%), Positives = 49/173 (28%), Gaps = 40/173 (23%)

Query: 247 GADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQY 306
              +++L     + L  AA+RG                     +         +  LL+ 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARG--------------------QVE-------TVRQLLEA 34

Query: 307 KDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGY-YPIHDAAKNAS 365
               D       GR  + +       + A +L+   GA    A       P+HDAA+   
Sbjct: 35  G--ADPNALNRFGRRPIQVMM-MGSAQVAELLL-LHGAEPNCADPATLTRPVHDAAREGF 90

Query: 366 SKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA 418
             T+ V  + G  +              G LP+  A   G          +  
Sbjct: 91  LDTLVVLHRAGARLDVCDA--------WGRLPVDLAEEQGHRDIARYLHAATG 135

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 22/170 (12%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
               +    G          +             ++  TP   AA       +  L+ E 
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIA--------ADVVSEYETPWWTAARKADEQALSQLL-ED 66

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHIK 547
            D++ +D+  R+ LL  A  G  K V  L    A++  +D+      LH+          
Sbjct: 67  RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV--R-- 122

Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
               EV      E L+ LGA I +++    + L LA    +       + 
Sbjct: 123 ---PEVV-----EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 95.6 bits (239), Expect = 5e-23
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           + T  +                        AD+     E  +P   AA +   + +  L+
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLL 64

Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN-NSNE 577
            +  ++   D N R  L  +   G        ++         L   GA ++ ++     
Sbjct: 65  ED-RDVDAVDENGRTALLFVAGLG--S-----DKCV-----RLLAEAGADLDHRDMRGGL 111

Query: 578 SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           + LH+AA Y R   V+ L+    G+  I   D  GLT L +A +  
Sbjct: 112 TALHMAAGYVRPEVVEALVE--LGA-DIEVEDERGLTALELAREIL 154

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.2 bits (230), Expect = 9e-22
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 26/194 (13%)

Query: 343 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAV 402
                R    G        K+  S +          +            +E   P  +A 
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----------VSEYETPWWTAA 52

Query: 403 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----L 458
              D +A+   L     +     +  T +      G+   VRL         L      L
Sbjct: 53  RKADEQALSQ-LLEDRDVDAVDENGRTALLFVAGLGSDKCVRL---------LAEAGADL 102

Query: 459 NSTDAQ-KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
           +  D +  +T LH AA + R +VV+ L++ GAD+ V D+   + L LA            
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

Query: 518 VRNKANILLKDINR 531
           ++    I L+ +  
Sbjct: 163 MQFGRRIGLEKVIN 176

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 84.1 bits (209), Expect = 5e-19
 Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 22/179 (12%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
             EG +        G   +        A + +   +  TP   A  +     +  +  L+
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQL--LE 65

Query: 210 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLAASRG 268
             +     ++ D    T L   A       V+ L + GADL+  D +   + L +AA   
Sbjct: 66  DRDV----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121

Query: 269 GWKT------NGVNTRILNNKKQAVLHLATELNKVPILLILLQY------KDMIDILQG 315
             +        G +  + + +    L LA E+ K       +Q+      + +I++L+G
Sbjct: 122 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 180

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 84.1 bits (209), Expect = 6e-19
 Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 26/172 (15%)

Query: 102 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAV 161
                R    G        K+  S +          +            +E   P  +A 
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV-----------VSEYETPWWTAA 52

Query: 162 HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----L 217
              D +A+   L     +     +  T +      G+   VRL         L      L
Sbjct: 53  RKADEQALSQ-LLEDRDVDAVDENGRTALLFVAGLGSDKCVRL---------LAEAGADL 102

Query: 218 NSTDAQ-KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           +  D +  +T LH AA + R +VV+ L++ GAD+ V D+   + L LA    
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 80.2 bits (199), Expect = 1e-17
 Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 30/189 (15%)

Query: 67  GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
           G     I                             A +    S    P   AA+ A  +
Sbjct: 14  GAMEYLIEWKDGHSPSWVPSSYI------------AADVV---SEYETPWWTAARKADEQ 58

Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ-QFD 185
            +   L+         + +    D  G   L      G  K V L  ++GA +  +    
Sbjct: 59  ALSQLLE-----DRDVDAV----DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109

Query: 186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 245
             T +H+A      ++V  +      E    +   D + +T L  A    +       + 
Sbjct: 110 GLTALHMAAGYVRPEVVEALV-----ELGADIEVEDERGLTALELAREILKTTPKGNPMQ 164

Query: 246 EGADLNVLD 254
            G  + +  
Sbjct: 165 FGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 70.2 bits (173), Expect = 4e-14
 Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 20/138 (14%)

Query: 487 EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI 546
                +    E     L+    G   + +      A+++ +                   
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARK--AD- 56

Query: 547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIIN 606
               E+         L+     ++  + +  + L   A  G    V+ L     G+  ++
Sbjct: 57  ----EQAL-----SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE--AGA-DLD 103

Query: 607 ESDGE-GLTPLHIASKEG 623
             D   GLT LH+A+   
Sbjct: 104 HRDMRGGLTALHMAAGYV 121

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.4 bits (171), Expect = 7e-14
 Identities = 37/206 (17%), Positives = 57/206 (27%), Gaps = 47/206 (22%)

Query: 218 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNT 277
           + T  +                        AD+                           
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-------------------------- 41

Query: 278 RILNNKKQAVLHLATELNKVPILLILLQ--YKDMIDILQGGEHGRTALHIAAIYDFDECA 335
               ++ +     A        L  LL+    D +D     E+GRTAL   A    D+C 
Sbjct: 42  ----SEYETPWWTAARKADEQALSQLLEDRDVDAVD-----ENGRTALLFVAGLGSDKCV 92

Query: 336 RILVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
           R+L  + GA L  R    G   +H AA     + +E  ++ G  I    E         G
Sbjct: 93  RLLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE--------RG 143

Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKI 420
              L  A            ++ G +I
Sbjct: 144 LTALELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.5 bits (140), Expect = 9e-10
 Identities = 34/154 (22%), Positives = 50/154 (32%), Gaps = 28/154 (18%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQ--YKDMIDILQGGEHGRTALHIAAIYDFDECARIL 86
            ++ +     A        L  LL+    D +D     E+GRTAL   A    D+C R+L
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLEDRDVDAVD-----ENGRTALLFVAGLGSDKCVRLL 95

Query: 87  VSEQPECDWIMVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEM 145
                          GA L  R    G   +H AA     + +E  ++ G  I       
Sbjct: 96  AEA------------GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE---- 139

Query: 146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKI 179
               D  G   L  A            ++ G +I
Sbjct: 140 ----DERGLTALELAREILKTTPKGNPMQFGRRI 169

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 95.9 bits (240), Expect = 1e-23
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTL 517
            +   +     L  AA   + D V+ L+  GAD+N  D+   +PL LA + G  + V  L
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66

Query: 518 VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE 577
           ++N A++   D      LHL      GH+     E+A     E L+  GA +N ++   +
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFI--GHL-----EIA-----EVLLKHGADVNAQDKFGK 114

Query: 578 SPLHLAARYGRYNTVKKLLS 597
           +   ++   G  +  + L  
Sbjct: 115 TAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 77.0 bits (191), Expect = 4e-17
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 13/122 (10%)

Query: 151 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQP 210
           ++    L  A   G    V + + +GA ++ +     TP++LA + G L+IV +      
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEV------ 65

Query: 211 SEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 266
              L+     +N+ DA   TPLH AA     ++ + L+  GAD+N  DK  ++   ++  
Sbjct: 66  ---LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122

Query: 267 RG 268
            G
Sbjct: 123 NG 124

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.7 bits (185), Expect = 3e-16
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 217 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT---- 272
            +   +     L  AA   + D V+ L+  GAD+N  D+   +PL LA + G  +     
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66

Query: 273 --NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
             NG +   ++      LHLA  +  + I  +LL++    D+    + G+TA  I+    
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG--ADVNAQDKFGKTAFDISIGNG 124

Query: 331 FDECARILVK 340
            ++ A IL K
Sbjct: 125 NEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.1 bits (147), Expect = 4e-11
 Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 20/141 (14%)

Query: 64  GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNA 123
           G      L  AA    D+  RIL++             GA +      G  P++ A  + 
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMAN------------GADVNAKDEYGLTPLYLATAHG 58

Query: 124 SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
             + +EV L      G     +    DA G  PLH A   G  +  E+ LK GA ++ Q 
Sbjct: 59  HLEIVEVLL----KNGADVNAV----DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110

Query: 184 FDLSTPVHLACSQGALDIVRL 204
               T   ++   G  D+  +
Sbjct: 111 KFGKTAFDISIGNGNEDLAEI 131

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.8 bits (141), Expect = 3e-10
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 316 GEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
           G      L  AA    D+  RIL+ + GA +      G  P++ A  +   + +EV L  
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLL-- 67

Query: 376 GESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 435
               G     + +     G  PLH A   G  +  E+ LK GA ++ Q     T   ++ 
Sbjct: 68  --KNGADVNAVDA----IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121

Query: 436 SQGALDIVRL 445
             G  D+  +
Sbjct: 122 GNGNEDLAEI 131

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 566 GACINLKNNSN-ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           G+  +  + S+    L  AAR G+ + V+ L++   G+  +N  D  GLTPL++A+  G
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMA--NGA-DVNAKDEYGLTPLYLATAHG 58

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 43.1 bits (103), Expect = 3e-05
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 16/117 (13%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L+  ++G +    +      L+LAT    + I+ +LL+     D+      G T LH+AA
Sbjct: 33  LM--ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG--ADVNAVDAIGFTPLHLAA 88

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 132
                E A +L+              GA +      G      +  N +    E+  
Sbjct: 89  FIGHLEIAEVLLKH------------GADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 94.4 bits (236), Expect = 3e-23
 Identities = 33/157 (21%), Positives = 48/157 (30%), Gaps = 48/157 (30%)

Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
                A      D V+  + +G D+N   +  R PL  AA  G                 
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG----------------- 51

Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
                     L              E+      E L+  GA IN  +  + +PL  A   
Sbjct: 52  ---------QL--------------EIL-----EFLLLKGADINAPDKHHITPLLSAVYE 83

Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           G  + VK LLS  +G+        +GLT       + 
Sbjct: 84  GHVSCVKLLLS--KGA-DKTVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 85.5 bits (213), Expect = 4e-20
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
            +  +     A+  GD   V+  +  G  ++        P+H A   G L+I+       
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF----- 58

Query: 210 PSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
               L+     +N+ D   +TPL  A        V+ L+ +GAD  V   +  +      
Sbjct: 59  ----LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114

Query: 266 SRG 268
           ++ 
Sbjct: 115 NQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 85.5 bits (213), Expect = 4e-20
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
            +     A+  GD   V+  +  G  ++        P+H A   G L+I+          
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF-------- 58

Query: 454 KLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
            L+     +N+ D   +TPL  A        V+ L+ +GAD  V   +  +      ++ 
Sbjct: 59  -LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 81.7 bits (203), Expect = 7e-19
 Identities = 30/172 (17%), Positives = 50/172 (29%), Gaps = 58/172 (33%)

Query: 426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVV 481
                   A   G LD V+           V     +N T      PLH AA   + +++
Sbjct: 6   MCDKEFMWALKNGDLDEVKD---------YVAKGEDVNRTLEGGRKPLHYAADCGQLEIL 56

Query: 482 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN 541
           ++L+ +GAD+N  DK   +PLL A   G                          H+    
Sbjct: 57  EFLLLKGADINAPDKHHITPLLSAVYEG--------------------------HV---- 86

Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVK 593
                             + L++ GA   +K     +             ++
Sbjct: 87  ----------SCV-----KLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 20/140 (14%)

Query: 64  GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNA 123
           G         A      +  +  V++            G  + R    G  P+H AA   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAK------------GEDVNRTLEGGRKPLHYAADCG 51

Query: 124 SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
             + +E  L  G  I           D     PL SAV+ G    V+L L  GA  + + 
Sbjct: 52  QLEILEFLLLKGADINAP--------DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103

Query: 184 FDLSTPVHLACSQGALDIVR 203
            D  T      +Q    +++
Sbjct: 104 PDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.3 bits (158), Expect = 1e-12
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 9/129 (6%)

Query: 316 GEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
           G         A      +  +  V   G  + R    G  P+H AA     + +E  L  
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 376 GESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 435
           G  I    +            PL SAV+ G    V+L L  GA  + +  D  T      
Sbjct: 63  GADINAPDKH--------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114

Query: 436 SQGALDIVR 444
           +Q    +++
Sbjct: 115 NQAIKALLQ 123

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 95.8 bits (238), Expect = 2e-21
 Identities = 41/380 (10%), Positives = 86/380 (22%), Gaps = 98/380 (25%)

Query: 150 DAEGNLPLHSAV---HGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
             +  +    A           + L L S   +   Q +      LA   G L ++  + 
Sbjct: 89  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 148

Query: 207 NLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV--LDKEKRSPLLLA 264
            L P+     +    A+       AA      V+  L +         +  E       A
Sbjct: 149 ELAPT---EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

Query: 265 ASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALH 324
           A   G                   H         ++  LL    M+       H      
Sbjct: 206 AVGRG-------------------HHN-------VINFLLDCPVMLAY--AEIHEFEYGE 237

Query: 325 IAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE 384
                 F       +K+   + K +  +G + +   ++                      
Sbjct: 238 KYVNP-FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSE---------------------- 274

Query: 385 EMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVR 444
                   +G   L + +   D                              +  LD +R
Sbjct: 275 ------CLQGFYMLRNLIRRND------------------------------EVLLDDIR 298

Query: 445 LMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLL 504
            + ++   + L    +        L  A           L+   + L +      +   +
Sbjct: 299 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYI 355

Query: 505 AASRGGWKTVLTLVRNKANI 524
             + G        + +  + 
Sbjct: 356 NETGGRLDLRAVALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 90.8 bits (225), Expect = 8e-20
 Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 39/348 (11%)

Query: 294 LNKVPILLILLQYKDMIDIL--QGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACS 351
           ++   + L+ L YK+ I I         +    +   Y          K   +   +   
Sbjct: 34  ISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYN---RNAKQLWSDAHKKGI 90

Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
                   AA    S  ++  L    +     + +     AE       A   G    + 
Sbjct: 91  KSEVICFVAAITGCSSALDT-LCLLLTSDEIVKVI----QAENYQAFRLAAENGHLHVLN 145

Query: 412 LCLKSGAKI--STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL 469
              +       +  Q +      LA   G L ++  +  L P+          A+     
Sbjct: 146 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT---EATAMIQAENYYAF 202

Query: 470 HCAAMF-DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
             AA+     +V+ +L+D    L   +  +        +    + V  L        L +
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 262

Query: 529 IN-------------RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS 575
            +                +L  L+        E   +     L    I   A        
Sbjct: 263 PDGVFDLVTKSECLQGFYMLRNLIRRN----DEVLLDDIRFLLSIPGIKALAPTATIPGD 318

Query: 576 NESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
               L LA R G       LLS       + +++       +I    G
Sbjct: 319 ANELLRLALRLGNQGACALLLSIP-SVLALTKANN-----YYINETGG 360

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 73.1 bits (179), Expect = 6e-14
 Identities = 32/260 (12%), Positives = 66/260 (25%), Gaps = 26/260 (10%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
           +S    +++  +      LA E   + +L  L +      +         A  +AA    
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175

Query: 80  DECARILVSEQPECDWIMVKDFG--ASLKRACSNGYYPI------HDAAKNASSKTMEVF 131
                 L    P     M++     A    A   G++ +             +       
Sbjct: 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE--- 232

Query: 132 LQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH 191
            ++GE               E +     +   G F  V    KS              + 
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT---KSECL------QGFYMLR 283

Query: 192 LACSQGA---LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
               +     LD +R + ++   + L    +        L  A           L+   +
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343

Query: 249 DLNVLDKEKRSPLLLAASRG 268
            L +      +   +  + G
Sbjct: 344 VLALTKA---NNYYINETGG 360

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 64.2 bits (156), Expect = 4e-11
 Identities = 25/176 (14%), Positives = 39/176 (22%), Gaps = 51/176 (28%)

Query: 458 LNSTDAQKMTPLHCAAM---FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTV 514
            +    +       AA+       D +  L+     + V+  E      LAA  G     
Sbjct: 85  AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG----- 139

Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN- 573
                                HL               V        L  L     +   
Sbjct: 140 ---------------------HL--------------HVL-----NRLCELAPTEIMAMI 159

Query: 574 -NSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV 628
              N     LAA  G  + + +L               E       A+    H++V
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAM-IQAENYYAFRWAAVGRGHHNV 214

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.0 bits (145), Expect = 8e-10
 Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 21/151 (13%)

Query: 479 DVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL 538
           + +   +    ++      ++   LL      +      +   ++   K I    I  + 
Sbjct: 48  EAIHIFLPGTKNM------EQVRQLLCLYYAHYNRNAKQL--WSDAHKKGIKSEVICFVA 99

Query: 539 VLNG-GGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
            + G    +               L+     + +    N     LAA  G  + + +L  
Sbjct: 100 AITGCSSALDTL----------CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC- 148

Query: 598 SERGSFIINESDGEGLTPLHIASKEGFHYSV 628
               + I+     E      +A++ G H  V
Sbjct: 149 ELAPTEIMAMIQAENYHAFRLAAENG-HLHV 178

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 88.2 bits (220), Expect = 3e-21
 Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 48/152 (31%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
            TPLH AA     + V+ L+ +GAD+N   K+  +PL LAA  G                
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG---------------- 53

Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
                     H               E+      + L+  GA +N ++    +P HLA +
Sbjct: 54  ----------HA--------------EIV-----KLLLAKGADVNARSKDGNTPEHLAKK 84

Query: 586 YGRYNTVKKLLSSERGSFIINESDGEGLTPLH 617
            G +  VK L +  +G+  +N          H
Sbjct: 85  NGHHEIVKLLDA--KGA-DVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 78.6 bits (195), Expect = 9e-18
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 417 GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCA 472
           G    ++  D +TP+H A   G  + V+          L+     +N+      TPLH A
Sbjct: 1   GHMWGSK--DGNTPLHNAAKNGHAEEVKK---------LLSKGADVNARSKDGNTPLHLA 49

Query: 473 AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRR 532
           A     ++V+ L+ +GAD+N   K+  +P  LA   G  + V  L    A++  +     
Sbjct: 50  AKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109

Query: 533 NILH 536
           +  H
Sbjct: 110 HHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.5 bits (187), Expect = 8e-17
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 13/116 (11%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
             +GN PLH+A   G  + V+  L  GA ++ +  D +TP+HLA   G  +IV+L     
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL----- 60

Query: 210 PSEKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL 261
               L+     +N+      TP H A      ++V+ L  +GAD+N          
Sbjct: 61  ----LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.0 bits (165), Expect = 9e-14
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 176 GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCA 231
           G    ++  D +TP+H A   G  + V+          L+     +N+      TPLH A
Sbjct: 1   GHMWGSK--DGNTPLHNAAKNGHAEEVKK---------LLSKGADVNARSKDGNTPLHLA 49

Query: 232 AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           A     ++V+ L+ +GAD+N   K+  +P  LA   G
Sbjct: 50  AKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.0 bits (165), Expect = 1e-13
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 15/89 (16%)

Query: 535 LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKK 594
           LH    NG  H      E       + L++ GA +N ++    +PLHLAA+ G    VK 
Sbjct: 13  LHNAAKNG--HA-----EEV-----KKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 595 LLSSERGSFIINESDGEGLTPLHIASKEG 623
           LL+  +G+  +N    +G TP H+A K G
Sbjct: 61  LLA--KGA-DVNARSKDGNTPEHLAKKNG 86

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.8 bits (136), Expect = 7e-10
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 20/130 (15%)

Query: 62  QGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAK 121
            G + G T LH AA     E  + L+S+            GA +     +G  P+H AAK
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSK------------GADVNARSKDGNTPLHLAAK 51

Query: 122 NASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIST 181
           N  ++ +++ L  G  +             +GN P H A   G  + V+L    GA ++ 
Sbjct: 52  NGHAEIVKLLLAKGADVNAR--------SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

Query: 182 QQFDLSTPVH 191
           + +  S   H
Sbjct: 104 RSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 314 QGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
            G + G T LH AA     E  + L+   GA +     +G  P+H AAKN  ++ +++ L
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 374 QFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH 432
             G  +    +        +GN P H A   G  + V+L    GA ++ + +  S   H
Sbjct: 63  AKGADVNARSK--------DGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.2 bits (194), Expect = 6e-18
 Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 45/132 (34%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
            TPLH AA     +VV+ L++ GAD+N  DK  R+PL LAA  G                
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG---------------- 46

Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR 585
                     HL              EV      + L+  GA +N K+ +  +PLHLAAR
Sbjct: 47  ----------HL--------------EVV-----KLLLEAGADVNAKDKNGRTPLHLAAR 77

Query: 586 YGRYNTVKKLLS 597
            G    VK LL 
Sbjct: 78  NGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 13/98 (13%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
           TP+HLA   G L++V+L         L+     +N+ D    TPLH AA     +VV+ L
Sbjct: 4   TPLHLAARNGHLEVVKL---------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA 522
           ++ GAD+N  DK  R+PL LAA  G  + V  L+   A
Sbjct: 55  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 67.8 bits (167), Expect = 3e-14
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 13/85 (15%)

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLV----CLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
           TP+HLA   G L++V+L         L+     +N+ D    TPLH AA     +VV+ L
Sbjct: 4   TPLHLAARNGHLEVVKL---------LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

Query: 244 IDEGADLNVLDKEKRSPLLLAASRG 268
           ++ GAD+N  DK  R+PL LAA  G
Sbjct: 55  LEAGADVNAKDKNGRTPLHLAARNG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.2 bits (163), Expect = 8e-14
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 13/100 (13%)

Query: 153 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 212
           G  PLH A   G  + V+L L++GA ++ +  +  TP+HLA   G L++V+L        
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL-------- 53

Query: 213 KLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
            L+     +N+ D    TPLH AA     +VV+ L++ GA
Sbjct: 54  -LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.2 bits (163), Expect = 8e-14
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 13/100 (13%)

Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           G  PLH A   G  + V+L L++GA ++ +  +  TP+HLA   G L++V+L        
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL-------- 53

Query: 454 KLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 489
            L+     +N+ D    TPLH AA     +VV+ L++ GA
Sbjct: 54  -LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.5 bits (156), Expect = 8e-13
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 29/116 (25%)

Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
            TPLH AA     +VV+ L++ GAD+N  DK  R+PL LAA  G                
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG---------------- 46

Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
               HL        ++ +LL+     D+    ++GRT LH+AA     E  ++L++
Sbjct: 47  ----HLE-------VVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.1 bits (155), Expect = 1e-12
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
           L+  GA +N K+ +  +PLHLAAR G    VK LL    G+  +N  D  G TPLH+A++
Sbjct: 21  LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AGA-DVNAKDKNGRTPLHLAAR 77

Query: 622 EG 623
            G
Sbjct: 78  NG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 42/128 (32%)

Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
           +GRT LH+AA     E  ++L+             G      A  NA  K          
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-----------EAG------ADVNAKDK---------- 33

Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
                           G  PLH A   G  + V+L L++GA ++ +  +  TP+HLA   
Sbjct: 34  ---------------NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78

Query: 438 GALDIVRL 445
           G L++V+L
Sbjct: 79  GHLEVVKL 86

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVE 170
           NG  P+H AA+N   + +++ L      G          D  G  PLH A   G  + V+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL----EAGADVNAK----DKNGRTPLHLAARNGHLEVVK 52

Query: 171 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
           L L++GA ++ +  +  TP+HLA   G L++V+L
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.1 bits (116), Expect = 2e-07
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 20/112 (17%)

Query: 66  HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
           +GRT LH+AA     E  ++L+              GA +     NG  P+H AA+N   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA------------GADVNAKDKNGRTPLHLAARNGHL 48

Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA 177
           + +++ L+ G  +           D  G  PLH A   G  + V+L L++GA
Sbjct: 49  EVVKLLLEAGADVNAK--------DKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 71.1 bits (175), Expect = 3e-15
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 462 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
            +     L  AA   + D V+ L+  GAD+   DK   +PL LAA  G  + V  L+   
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 522 ANILLKDINRRNILHLLVLNGGGHIKEFAE 551
           A++  +D   +    + + NG   + E  +
Sbjct: 81  ADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 70.7 bits (174), Expect = 4e-15
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 16/121 (13%)

Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC--- 457
                        +  G+ + +   DL   +  A   G  D VR+         L+    
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRI---------LMANGA 48

Query: 458 -LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLT 516
            + + D    TPLH AA     +VV+ L++ GAD+   DK  ++   ++   G       
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108

Query: 517 L 517
           L
Sbjct: 109 L 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 70.3 bits (173), Expect = 6e-15
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 16/113 (14%)

Query: 160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVC--- 216
                        +  G+ + +   DL   +  A   G  D VR+         L+    
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRI---------LMANGA 48

Query: 217 -LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
            + + D    TPLH AA     +VV+ L++ GAD+   DK  ++   ++   G
Sbjct: 49  DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.6 bits (166), Expect = 4e-14
 Identities = 31/161 (19%), Positives = 45/161 (27%), Gaps = 51/161 (31%)

Query: 472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR 531
            +          L+  G+ +     +    LL AA  G                      
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG---------------------- 35

Query: 532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNT 591
                               +         L+  GA +  K+ +  +PLHLAAR G    
Sbjct: 36  ----QD--------------DEV-----RILMANGADVAAKDKNGSTPLHLAARNGHLEV 72

Query: 592 VKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           VK LL    G+  +   D  G T   I+   G      I Q
Sbjct: 73  VKLLLE--AGA-DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 31/119 (26%)

Query: 221 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRIL 280
            +     L  AA   + D V+ L+  GAD+   DK   +PL LAA  G            
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG------------ 68

Query: 281 NNKKQAVLHLAT-ELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
                   HL   +L        LL+     D+    + G+TA  I+     ++ A IL
Sbjct: 69  --------HLEVVKL--------LLEAG--ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 33/142 (23%)

Query: 231 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHL 290
            +          L+  G+ +     +    LL AA  G                      
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAG--------------------QD 37

Query: 291 ATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRAC 350
                 V IL+      +  D+    ++G T LH+AA     E  ++L+ + GA +    
Sbjct: 38  DE----VRILM-----ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQD 87

Query: 351 SNGYYPIHDAAKNASSKTMEVF 372
             G      +  N +    E+ 
Sbjct: 88  KFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
                 L  AA    D+  RIL+   GA +     NG  P+H AA+N   + +++ L+ G
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVEL 412
             +    +         G      ++  G+    E+
Sbjct: 81  ADVXAQDK--------FGKTAFDISIDNGNEDLAEI 108

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 20/107 (18%)

Query: 65  EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
                 L  AA    D+  RIL++             GA +     NG  P+H AA+N  
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMAN------------GADVAAKDKNGSTPLHLAARNGH 69

Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVEL 171
            + +++ L+ G  +           D  G      ++  G+    E+
Sbjct: 70  LEVVKLLLEAGADVXAQ--------DKFGKTAFDISIDNGNEDLAEI 108

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVS 88
            +     L  A    +   + IL+      D+    ++G T LH+AA     E  ++L+ 
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 89  EQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVF 131
                        GA +      G      +  N +    E+ 
Sbjct: 79  A------------GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 399 HSAVHGGDFKAVELCLKSGAKISTQQF------DLSTPVHLACSQGALDIVRLM-FNLQP 451
             AV   D   +      G  ++ +           T +HLA        + ++ F +Q 
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 452 SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW 511
           S     L+    +  T LH   + D  + ++ L+   A + + ++   +PL +A      
Sbjct: 195 S---GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 251

Query: 512 KTVLTLVRNKAN 523
                L +  + 
Sbjct: 252 HCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 10/118 (8%)

Query: 158 HSAVHGGDFKAVELCLKSGAKISTQQF------DLSTPVHLACSQGALDIVRLM-FNLQP 210
             AV   D   +      G  ++ +           T +HLA        + ++ F +Q 
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 211 SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
           S     L+    +  T LH   + D  + ++ L+   A + + ++   +PL +A    
Sbjct: 195 S---GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 249

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.1 bits (127), Expect = 8e-08
 Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 5/109 (4%)

Query: 110 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAV 169
                 +H A ++    ++ + + F      +    +     +G+  LH      + + +
Sbjct: 167 EPDETALHLAVRSVDRTSLHI-VDFLVQNSGN----LDKQTGKGSTALHYCCLTDNAECL 221

Query: 170 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
           +L L+  A I        TP+ +A          L+           ++
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 14/109 (12%), Positives = 35/109 (32%), Gaps = 5/109 (4%)

Query: 351 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAV 410
                 +H A ++    ++ + + F      +    +     +G+  LH      + + +
Sbjct: 167 EPDETALHLAVRSVDRTSLHI-VDFLVQNSGN----LDKQTGKGSTALHYCCLTDNAECL 221

Query: 411 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
           +L L+  A I        TP+ +A          L+           ++
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 32/118 (27%)

Query: 226 TPLHCA---AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNN 282
           T LH A          +V +L+    +L+    +  + L                     
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL--------------------- 209

Query: 283 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
                 H     +    L +LL+ K  I+I    E G T L IA     + C  +L +
Sbjct: 210 ------HYCCLTDNAECLKLLLRGKASIEIAN--ESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 22/119 (18%)

Query: 288 LHLATE---LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
           LHLA        + I+  L+Q    +D       G TALH   + D  EC ++L++   A
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQT--GKGSTALHYCCLTDNAECLKLLLR-GKA 229

Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVH 403
           S++ A  +G  P+  A +       E+  Q                A  G    H  V 
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQ----------------ALSGRFNSHVHVE 272

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 467 TPLHCA---AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
           T LH A          +V +L+    +L+    +  + L         + +  L+R KA+
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 524 ILLKDINRRNILHLLVLNGGGHIKE 548
           I + + +    L +       H +E
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 15/106 (14%)

Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI 604
           H+   + +  ++ + + L+     ++ +     + LH          +K LL     +  
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR--GKA-S 230

Query: 605 INESDGEGLTPLHIASKEGFHYSVSIFQ------------VTYVWC 638
           I  ++  G TPL IA +    +   +              V Y W 
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWR 276

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 14/158 (8%)

Query: 94  DWI----MVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLF 149
           D+I    M + +        +   + + +A K      +      G  +        +  
Sbjct: 108 DYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPL--ANG 165

Query: 150 DAEGNLPLHSAVHGGD---FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMF 206
                  LH AV   D      V+  +++   +  Q    ST +H  C     + ++L+ 
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 207 NLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
             + S     +   +    TPL  A         + L 
Sbjct: 226 RGKAS-----IEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 36  LHLATE---LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
           LHLA        + I+  L+Q    +D       G TALH   + D  EC ++L+     
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQT--GKGSTALHYCCLTDNAECLKLLLR---- 226

Query: 93  CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 133
                     AS++ A  +G  P+  A +       E+  Q
Sbjct: 227 --------GKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 4   LSVQSDNKNKSRLIP--SSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL 61
           L+V+S ++    ++     +  N      K    LH     +    L +LL+ K  I+I 
Sbjct: 175 LAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA 234

Query: 62  QGGEHGRTALHIAAIYDFDECARILVSEQ 90
              E G T L IA     + C  +L    
Sbjct: 235 N--ESGETPLDIAKRLKHEHCEELLTQAL 261

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 16/121 (13%)

Query: 158 HSAVHGGDFKAVELCLKSGAKISTQQF------DLSTPVHLACSQGALDIVRLMFNLQPS 211
            +A+   D  +V     +G                   +HLA        + L+      
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV------ 209

Query: 212 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
           + ++     L++  A   T LH AA++++ D ++ L+   A +  +++   + L +A  +
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 269

Query: 268 G 268
            
Sbjct: 270 H 270

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 16/121 (13%)

Query: 399 HSAVHGGDFKAVELCLKSGAKISTQQF------DLSTPVHLACSQGALDIVRLMFNLQPS 452
            +A+   D  +V     +G                   +HLA        + L+      
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV------ 209

Query: 453 EKLVC----LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 508
           + ++     L++  A   T LH AA++++ D ++ L+   A +  +++   + L +A  +
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 269

Query: 509 G 509
            
Sbjct: 270 H 270

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 288 LHLATELNK---VPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
           LHLA ++     +P++  ++Q    +D       G TALH AA+Y+  +C ++L+K   A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKA--ADGNTALHYAALYNQPDCLKLLLK-GRA 250

Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
            +      G   +  A K    +  E+  Q
Sbjct: 251 LVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 531 RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYN 590
              +LHL V           +          +I  G  ++ K     + LH AA Y + +
Sbjct: 190 EELVLHLAVKVANQASLPLVDF---------IIQNGGHLDAKAADGNTALHYAALYNQPD 240

Query: 591 TVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
            +K LL     + ++   +  G T L IA K+       + +
Sbjct: 241 CLKLLLK--GRA-LVGTVNEAGETALDIARKKHHKECEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 108 ACSNGYYPIHDAAKNASSKT---MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG 164
           A +     +H A K A+  +   ++  +Q G  +            A+GN  LH A    
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--------AADGNTALHYAALYN 237

Query: 165 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 218
               ++L LK  A + T      T + +A  +   +   L+   Q       L+
Sbjct: 238 QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 36  LHLATELNK---VPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPE 92
           LHLA ++     +P++  ++Q    +D       G TALH AA+Y+  +C ++L+     
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKA--ADGNTALHYAALYNQPDCLKLLLK---- 247

Query: 93  CDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 133
                     A +      G   +  A K    +  E+  Q
Sbjct: 248 --------GRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 32/118 (27%)

Query: 226 TPLHCAAMFDRCD---VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNN 282
             LH A          +V ++I  G  L+    +  + L                     
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL--------------------- 230

Query: 283 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
                 H A   N+   L +LL+ + ++  +   E G TAL IA      EC  +L +
Sbjct: 231 ------HYAALYNQPDCLKLLLKGRALVGTV--NEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 467 TPLHCAAMFDRCD---VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
             LH A          +V ++I  G  L+    +  + L  AA       +  L++ +A 
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251

Query: 524 ILLKDINRRNILHLLVLNGGGHIKE 548
           +   +      L +         +E
Sbjct: 252 VGTVNEAGETALDIARKKHHKECEE 276

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 349 ACSNGYYPIHDAAKNASSKT---MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGG 405
           A +     +H A K A+  +   ++  +Q G  +           AA+GN  LH A    
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--------AADGNTALHYAALYN 237

Query: 406 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
               ++L LK  A + T      T + +A  +   +   L+   Q       L+
Sbjct: 238 QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 291

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 14/121 (11%)

Query: 398 LHSAVHGGDFKAVELCLKSGAKISTQ------QFDLSTPVHLAC---SQGALDIVRLMFN 448
           L +A+   D  +V     +G            Q      +HLA    +Q +L +V  +  
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI-- 193

Query: 449 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 508
           +Q       L++  A   T LH AA++++ D ++ L+   A +  +++   + L +A  +
Sbjct: 194 IQNG---GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 509 G 509
            
Sbjct: 251 H 251

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 54.5 bits (131), Expect = 7e-08
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 261 LLLAASRGGWKTNGVNTRILNNKKQAVLHLATEL---NKVPILLILLQYKDMIDILQGGE 317
           +L A + G      +        ++ VLHLA ++     +P++  ++Q    +D      
Sbjct: 148 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA--A 205

Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
            G TALH AA+Y+  +C ++L+K   A +      G   +  A K    +  E+  Q
Sbjct: 206 DGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQ 261

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 23  VNTRILNNKKQAVLHLATEL---NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
           +        ++ VLHLA ++     +P++  ++Q    +D       G TALH AA+Y+ 
Sbjct: 162 LPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA--ADGNTALHYAALYNQ 219

Query: 80  DECARILV 87
            +C ++L+
Sbjct: 220 PDCLKLLL 227

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 18/108 (16%)

Query: 528 DINRRNILHLLVLNGGG---HIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAA 584
                 +LHL V         + +F            +I  G  ++ K     + LH AA
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDF------------IIQNGGHLDAKAADGNTALHYAA 215

Query: 585 RYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
            Y + + +K LL   +G  ++   +  G T L IA K+       + +
Sbjct: 216 LYNQPDCLKLLL---KGRALVGTVNEAGETALDIARKKHHKECEELLE 260

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 157 LHSAVHGGDFKAVELCLKSGAKISTQQ--FDLSTPVHLACSQGALDIVRLMFNLQPSEKL 214
             ++ H      +   L  GA ++      D +TP+  A +  +L     +     +   
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN--- 260

Query: 215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
             +N  D+    PLH A +     +    +  GADL   D E R PL +A    
Sbjct: 261 --VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 29/166 (17%), Positives = 45/166 (27%), Gaps = 29/166 (17%)

Query: 174 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM 233
                 S     L     L  + G    +  M +       V   +      TPL  A  
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244

Query: 234 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATE 293
            +     ++L+  GA++N  D   R P                           LH AT 
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGP---------------------------LHHATI 277

Query: 294 LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
           L    +  + L+    +        GR  L IA      +   +L 
Sbjct: 278 LGHTGLACLFLKRGADLGARD--SEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 25/134 (18%), Positives = 43/134 (32%)

Query: 415 KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM 474
                 S     L     L  + G    +  M +       V   +      TPL  A  
Sbjct: 185 SKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA 244

Query: 475 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI 534
            +     ++L+  GA++N  D   R PL  A   G        ++  A++  +D   R+ 
Sbjct: 245 ANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304

Query: 535 LHLLVLNGGGHIKE 548
           L + +      I  
Sbjct: 305 LTIAMETANADIVT 318

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 108 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFK 167
              +   P+  A    S    E  LQ G ++        +  D+ G  PLH A   G   
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQNGANV--------NQADSAGRGPLHHATILGHTG 282

Query: 168 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP 227
              L LK GA +  +  +   P+ +A      DIV L+   +  E          +    
Sbjct: 283 LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342

Query: 228 LH 229
           + 
Sbjct: 343 IF 344

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 27/137 (19%), Positives = 41/137 (29%), Gaps = 11/137 (8%)

Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF 407
            +   G      +    S  TM   L  G  +             +   PL  A      
Sbjct: 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGG------QDNATPLIQATAANSL 248

Query: 408 KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT 467
            A E  L++GA ++        P+H A   G   +  L            L + D++   
Sbjct: 249 LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-----LGARDSEGRD 303

Query: 468 PLHCAAMFDRCDVVQYL 484
           PL  A      D+V  L
Sbjct: 304 PLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 562 LINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK 621
           L+  GA +N  +++   PLH A   G        L  +RG+  +   D EG  PL IA +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFL--KRGA-DLGARDSEGRDPLTIAME 310

Query: 622 EGFHYSVSIFQVTYVWC 638
                 V++ ++  +  
Sbjct: 311 TANADIVTLLRLAKMRE 327

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 10/156 (6%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASL--KRACSNGYYPIHDAAKNASSKTMEVFLQ 374
            H    L  A+ +             GA +       +   P+  A    S    E  LQ
Sbjct: 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256

Query: 375 FGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLA 434
            G ++        +   + G  PLH A   G      L LK GA +  +  +   P+ +A
Sbjct: 257 NGANV--------NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308

Query: 435 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 470
                 DIV L+   +  E          +    + 
Sbjct: 309 METANADIVTLLRLAKMREAEAAQGQAGDETYLDIF 344

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 8   SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 67
                 +  +   + VN           L  AT  N +     LLQ    ++       G
Sbjct: 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD--SAG 268

Query: 68  RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT 127
           R  LH A I      A + +              GA L    S G  P+  A + A++  
Sbjct: 269 RGPLHHATILGHTGLACLFLK------------RGADLGARDSEGRDPLTIAMETANADI 316

Query: 128 MEVFLQ 133
           + +   
Sbjct: 317 VTLLRL 322

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 66/585 (11%), Positives = 162/585 (27%), Gaps = 157/585 (26%)

Query: 38  LATELNKVPI--LLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
           L + +        ++   Y +  D L          +++ +  + +  + L+  +P    
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KN 152

Query: 96  IMV---KDFGAS-L-KRACSNGYYPIHDAAKNASSKTMEVF-LQFGESIGCSREEMISLF 149
           +++      G + +    C +  Y +            ++F L       C+  E  ++ 
Sbjct: 153 VLIDGVLGSGKTWVALDVCLS--YKVQCKMDF------KIFWLNLKN---CNSPE--TVL 199

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 209
           +    L                  +      T + D S+ + L       ++ RL+ +  
Sbjct: 200 EMLQKL----------------LYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 210 PSEKLVCL-NSTDAQKMTPLHCAAMFD-RCDVVQYLI---DEGADLNVLDKEKRSPLLLA 264
               L+ L N  +A+          F+  C +   L+    +    + L     + + L 
Sbjct: 243 YENCLLVLLNVQNAK------AWNAFNLSCKI---LLTTRFKQ-VTDFLSAATTTHISLD 292

Query: 265 ASRGGW---KTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRT 321
                    +   +  + L+ + Q +       N   + +I    +D +      +H   
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH--- 349

Query: 322 ALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAA---KNA--SSKTMEVFLQFG 376
                   + D+   I+ +     L+ A     +     +    +A   +  + +   + 
Sbjct: 350 -------VNCDKLTTII-ESSLNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLI--WF 397

Query: 377 ESIGCSREEMISLF-----AAEGNLPLHSAVHGGDFKAVELCLKSGA---KISTQ----- 423
           + I      +++         +       ++     +         A    I        
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 424 ---QFDLSTPVHLACSQGALD------IVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM 474
                DL  P         LD      I   + N++  E++                  +
Sbjct: 458 TFDSDDLIPP--------YLDQYFYSHIGHHLKNIEHPERM-----------------TL 492

Query: 475 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN-KANI--------- 524
           F       +L     D   L+++ R       + G     L  ++  K  I         
Sbjct: 493 FRMV----FL-----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 525 LLKDINR--------------RNILHLLVLNGGGHIKEFAEEVAA 555
           L+  I                 ++L + ++     I E A +   
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	641
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-66  Score=522.24  Aligned_cols=400  Identities=25%  Similarity=0.320  Sum_probs=318.2

Q ss_pred             CCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhh
Q psy8763          20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVK   99 (641)
Q Consensus        20 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~   99 (641)
                      +.|++++..+..|+||||+|+..|+.++|++|+++|+  +++..+..|.||||+|+..|+.+++++|+++          
T Consensus         2 ~~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~--~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----------   69 (437)
T 1n11_A            2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLLQN----------   69 (437)
T ss_dssp             -------------CCHHHHHHHHTCHHHHHHHHHTTC--CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH----------
T ss_pred             CCCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----------
Confidence            4678888888889999999999999999999998887  5556778888999999999999999999888          


Q ss_pred             hcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCC
Q psy8763         100 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKI  179 (641)
Q Consensus       100 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~  179 (641)
                        |++++.++..|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.++|++|++.|+++
T Consensus        70 --g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  139 (437)
T 1n11_A           70 --KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP--------NLATTAGHTPLHIAAREGHVETVLALLEKEASQ  139 (437)
T ss_dssp             --TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT--------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             --CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC--------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence              8888888888888888888888888888888888876        455777888888888888888888888888888


Q ss_pred             CcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q psy8763         180 STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS  259 (641)
Q Consensus       180 ~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t  259 (641)
                      +..+..|.||||+|+..|+.+++++|++++..     ++..+..|.|||++|+..++.+++++|+++|++++..+.    
T Consensus       140 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----  210 (437)
T 1n11_A          140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-----PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW----  210 (437)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCT----
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC----
Confidence            87777888888888888888888888887776     466777778888888888888888888877765542211    


Q ss_pred             HHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHH
Q psy8763         260 PLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV  339 (641)
Q Consensus       260 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  339 (641)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (437)
T 1n11_A          211 --------------------------------------------------------------------------------  210 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCC
Q psy8763         340 KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK  419 (641)
Q Consensus       340 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~  419 (641)
                                                                           .|.||||.|+..++.+++++|++.|++
T Consensus       211 -----------------------------------------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~  237 (437)
T 1n11_A          211 -----------------------------------------------------NGYTPLHIAAKQNQVEVARSLLQYGGS  237 (437)
T ss_dssp             -----------------------------------------------------TCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -----------------------------------------------------CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                                                                 133444445555555666666666777


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCC
Q psy8763         420 ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR  499 (641)
Q Consensus       420 ~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  499 (641)
                      ++..+..|.||||.|+..|+.+++++|++.+.     +++..+..|.||||+|+..++.+++++|+++|++++..+..|+
T Consensus       238 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  312 (437)
T 1n11_A          238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQA-----NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY  312 (437)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCC
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCC
Confidence            77777778888888888888888888887443     3677788888999999999999999999999999999999999


Q ss_pred             CHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCCh
Q psy8763         500 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESP  579 (641)
Q Consensus       500 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  579 (641)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|..|.||
T Consensus       313 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g------------~~~iv~~Ll~~ga~~~~~~~~g~t~  380 (437)
T 1n11_A          313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG------------HTDIVTLLLKNGASPNEVSSDGTTP  380 (437)
T ss_dssp             CHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCC------------hHHHHHHHHHCcCCCCCCCCCCCCH
Confidence            9999999999999999999999999999999999999999998            8899999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCC
Q psy8763         580 LHLAARYGRYNTVKKLLSSER  600 (641)
Q Consensus       580 L~~A~~~~~~~~v~~Ll~~g~  600 (641)
                      |++|++.|+.+++++|.....
T Consensus       381 l~~A~~~g~~~~~~~l~~~~~  401 (437)
T 1n11_A          381 LAIAKRLGYISVTDVLKVVTD  401 (437)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCC
T ss_pred             HHHHHHcCcHHHHHHHHhccc
Confidence            999999999999998876543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-66  Score=522.52  Aligned_cols=394  Identities=28%  Similarity=0.374  Sum_probs=335.7

Q ss_pred             ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccC
Q psy8763          59 DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI  138 (641)
Q Consensus        59 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  138 (641)
                      +++..+..|.||||+|+..|+.++|++|+++            |++++..+..|.||||.|+..|+.+++++|+++|+++
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~------------g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~   73 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQR------------GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV   73 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHT------------TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHc------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            5567778888888888888888888888888            8888888888888888888888888888888888876


Q ss_pred             CCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccc
Q psy8763         139 GCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN  218 (641)
Q Consensus       139 ~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  218 (641)
                              +..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.+..     .+
T Consensus        74 --------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~  140 (437)
T 1n11_A           74 --------NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-----QA  140 (437)
T ss_dssp             --------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----SC
T ss_pred             --------CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-----Cc
Confidence                    45577788888888888888888888888888888888888888888888888888888888776     46


Q ss_pred             cCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChh
Q psy8763         219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVP  298 (641)
Q Consensus       219 ~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  298 (641)
                      ..+..|.|||++|+..|+.+++++|+++|++++..+.                                           
T Consensus       141 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------------------------------------  177 (437)
T 1n11_A          141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-------------------------------------------  177 (437)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS-------------------------------------------
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-------------------------------------------
Confidence            6677788888888888888888888888776653322                                           


Q ss_pred             HHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhcccc
Q psy8763         299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES  378 (641)
Q Consensus       299 ~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  378 (641)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (437)
T 1n11_A          178 --------------------------------------------------------------------------------  177 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc
Q psy8763         379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCL  458 (641)
Q Consensus       379 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~  458 (641)
                                    .|.|||+.|+..++.+++++|++.|++++..+..+.||||.|+..++.+++++|++.+.     ++
T Consensus       178 --------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-----~~  238 (437)
T 1n11_A          178 --------------NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-----SA  238 (437)
T ss_dssp             --------------SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CT
T ss_pred             --------------CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----CC
Confidence                          23334444555555666666667777888888899999999999999999999999654     47


Q ss_pred             ccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHH
Q psy8763         459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL  538 (641)
Q Consensus       459 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  538 (641)
                      +..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|
T Consensus       239 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  318 (437)
T 1n11_A          239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA  318 (437)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHH
Q psy8763         539 VLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI  618 (641)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~  618 (641)
                      +..+            +.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++   ++..|..|+|||++
T Consensus       319 ~~~g------------~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~---~~~~~~~g~t~l~~  383 (437)
T 1n11_A          319 SHYG------------NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAI  383 (437)
T ss_dssp             HHSS------------CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCSSSCCHHHH
T ss_pred             HHcC------------cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCC---CCCCCCCCCCHHHH
Confidence            9999            89999999999999999999999999999999999999999999999   89999999999999


Q ss_pred             HHhhCCcceeeeceee
Q psy8763         619 ASKEGFHYSVSIFQVT  634 (641)
Q Consensus       619 A~~~~~~~~~~~l~~~  634 (641)
                      |...|+.+++++|...
T Consensus       384 A~~~g~~~~~~~l~~~  399 (437)
T 1n11_A          384 AKRLGYISVTDVLKVV  399 (437)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHhc
Confidence            9999999999988543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.7e-46  Score=358.27  Aligned_cols=307  Identities=23%  Similarity=0.283  Sum_probs=264.8

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhcccc-CCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCc
Q psy8763         110 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD-AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST  188 (641)
Q Consensus       110 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t  188 (641)
                      .+|.|+||.|+++|+.++|++|+++|++++        ..+ ..|.||||+|+..|+.++|++|+++|++++.++..+.+
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn--------~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~   94 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVN--------FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT   94 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTT--------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCC--------ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc
Confidence            346799999999999999999999999984        334 45899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q psy8763         189 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG  268 (641)
Q Consensus       189 ~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  268 (641)
                      +++.++..+...++..++..+.+     ++..+..|.|||++|+..|+.+++++|+++|++++.......          
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~----------  159 (337)
T 4g8k_A           95 PFILAAIAGSVKLLKLFLSKGAD-----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE----------  159 (337)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----------
T ss_pred             hhHHHHhcccchhhHHhhhccch-----hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc----------
Confidence            99999999999999999999888     688999999999999999999999999999999886543321          


Q ss_pred             CcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccc
Q psy8763         269 GWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKR  348 (641)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  348 (641)
                                                                +....+..|.||||+|+..|+.+++++|+++.|++++.
T Consensus       160 ------------------------------------------~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~  197 (337)
T 4g8k_A          160 ------------------------------------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA  197 (337)
T ss_dssp             ----------------------------------------------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC
T ss_pred             ------------------------------------------ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc
Confidence                                                      12223456889999999999999999999777899988


Q ss_pred             cccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy8763         349 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS  428 (641)
Q Consensus       349 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~  428 (641)
                      .+..|.++++.++..+..                                     .+...++++|+++|++++.++..|.
T Consensus       198 ~d~~g~t~l~~~~~~~~~-------------------------------------~~~~~i~~lLl~~gad~n~~d~~g~  240 (337)
T 4g8k_A          198 CDNMGRNALIHALLSSDD-------------------------------------SDVEAITHLLLDHGADVNVRGERGK  240 (337)
T ss_dssp             CCTTSCCHHHHHHHHSCT-------------------------------------TTHHHHHHHHHHTTCCTTCCCGGGC
T ss_pred             cCCCCCcHHHHHHHHcCc-------------------------------------ccHHHHHHHHHHCCCCCCCcCCCCC
Confidence            888888888766543221                                     1123567889999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhc
Q psy8763         429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR  508 (641)
Q Consensus       429 t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  508 (641)
                      ||||.|+..++.++++.|++.    .+.+++.+|..|+||||+|+..|+.++|++|+++|+++|.     .+|||+|++.
T Consensus       241 t~L~~a~~~~~~~~v~~Ll~~----~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~  311 (337)
T 4g8k_A          241 TPLILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRN  311 (337)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTS----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHT
T ss_pred             CHHHHHHHhhhhHHHHHHHHh----cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHc
Confidence            999999999999999999984    3455889999999999999999999999999999999875     4599999999


Q ss_pred             CCHHHHHHHHHcCCCcccc
Q psy8763         509 GGWKTVLTLVRNKANILLK  527 (641)
Q Consensus       509 ~~~~~v~~Ll~~g~~~~~~  527 (641)
                      ++.+++++|+++|+++|..
T Consensus       312 ~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          312 YDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             TCHHHHHHHHHTTCCC---
T ss_pred             CCHHHHHHHHHCcCCCCCC
Confidence            9999999999999999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.7e-46  Score=362.72  Aligned_cols=139  Identities=24%  Similarity=0.236  Sum_probs=93.7

Q ss_pred             CCCCcHHHHHHhc---CChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHh
Q psy8763         463 AQKMTPLHCAAMF---DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLV  539 (641)
Q Consensus       463 ~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  539 (641)
                      ..|.||||+|+..   +..+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus       209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~  288 (351)
T 3utm_A          209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA  288 (351)
T ss_dssp             TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            3455666666666   3457778888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHH
Q psy8763         540 LNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA  619 (641)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A  619 (641)
                      ..+            +.+++++|+++|++++.+|..|.||+++|    ..+++++|.+.++.      ....+.+++..|
T Consensus       289 ~~~------------~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~------~~~~~~~~l~~A  346 (351)
T 3utm_A          289 LAG------------HLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM------RTSDVDYRLLEA  346 (351)
T ss_dssp             HHT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---------------------
T ss_pred             HcC------------cHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc------ccCcceeehhhh
Confidence            887            77888888888888888888888888886    56778888777654      455667788888


Q ss_pred             HhhC
Q psy8763         620 SKEG  623 (641)
Q Consensus       620 ~~~~  623 (641)
                      ++.|
T Consensus       347 ~~~g  350 (351)
T 3utm_A          347 SKAG  350 (351)
T ss_dssp             ----
T ss_pred             hccC
Confidence            7766

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.8e-44  Score=344.25  Aligned_cols=301  Identities=22%  Similarity=0.235  Sum_probs=263.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCC-CCCcHHHHHHHhCCHHHHHHHHHhcccCCCchh
Q psy8763          65 EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS-NGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE  143 (641)
Q Consensus        65 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  143 (641)
                      ..|.||||.|++.|++++|++|+++            |++++..+. .|+||||+|+..|+.++|++|+++|+++     
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~------------Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-----   85 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEG------------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-----   85 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH------------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-----
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHC------------CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-----
Confidence            4578999999999999999999999            999998875 4899999999999999999999999997     


Q ss_pred             hhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccc-----ccc
Q psy8763         144 EMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV-----CLN  218 (641)
Q Consensus       144 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~  218 (641)
                         +..+..+.++++.++..+...++..+++.+++++..+..|.||+++|+..|+.+++++|++++++....     ...
T Consensus        86 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~  162 (337)
T 4g8k_A           86 ---VLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE  162 (337)
T ss_dssp             ---TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----
T ss_pred             ---hhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccc
Confidence               466889999999999999999999999999999999999999999999999999999999998874221     123


Q ss_pred             cCCCCCCcHHHHHHhcCcHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCCh
Q psy8763         219 STDAQKMTPLHCAAMFDRCDVVQYLID-EGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKV  297 (641)
Q Consensus       219 ~~~~~~~t~L~~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~  297 (641)
                      ..+..|.||||+|+..|+.++|++|++ .|++++..+..|.++++.++..+..                       .+..
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~-----------------------~~~~  219 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-----------------------SDVE  219 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT-----------------------TTHH
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc-----------------------ccHH
Confidence            345678999999999999999999996 5999999999999999887655421                       1123


Q ss_pred             hHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccc
Q psy8763         298 PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE  377 (641)
Q Consensus       298 ~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  377 (641)
                      .++++|++.+.  +++..+..|.||||.|+..++.++++.|+...+++++..+..|.||||+|+..++.+++++|+++|+
T Consensus       220 ~i~~lLl~~ga--d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  297 (337)
T 4g8k_A          220 AITHLLLDHGA--DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  297 (337)
T ss_dssp             HHHHHHHHTTC--CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHHHHHCCC--CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            57788999988  5667788899999999999999999999977789999999999999999999999999999999998


Q ss_pred             cccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCC
Q psy8763         378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ  423 (641)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  423 (641)
                      +++             ..+||+.|++.++.+++++|+++|++++..
T Consensus       298 d~n-------------~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          298 STD-------------CGDLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             SST-------------TCCHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             CCC-------------CCCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            763             456999999999999999999999998764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-42  Score=324.33  Aligned_cols=263  Identities=22%  Similarity=0.247  Sum_probs=235.1

Q ss_pred             CcchHHHHHHHhCcHHHHHHHHHhcCcccccc-ccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCCh
Q psy8763         318 HGRTALHIAAIYDFDECARILVKDFGASLKRA-CSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNL  396 (641)
Q Consensus       318 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t  396 (641)
                      .|.++|+.|+..|+.+++++|+ +.+.+++.. +..|.||||+|+..++.+++++|++.|++++        ..+..|.|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------~~~~~g~t   74 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV--------LRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------CCCTTCCC
T ss_pred             ccchHHHHHHHcCCHHHHHHHH-HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc--------ccCCCCCC
Confidence            3778899999999999999998 667777766 6778899999999999999999999888754        34567889


Q ss_pred             HHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccC----------CCCCC
Q psy8763         397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNST----------DAQKM  466 (641)
Q Consensus       397 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~----------~~~~~  466 (641)
                      |||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++.+..     ++..          +..|.
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~~~~~~~~~g~  149 (285)
T 1wdy_A           75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-----VNLRRKTKEDQERLRKGGA  149 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCCCCHHHHHTTCCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-----cccccccHHHHHhhccCCC
Confidence            99999999999999999999999999999999999999999999999999986544     3433          77899


Q ss_pred             cHHHHHHhcCChhHHHHHHHc-CCCCCcCCCCCCCHHHHHHhcCC----HHHHHHHHHcCCCccccccCCCchhHHHhhc
Q psy8763         467 TPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGG----WKTVLTLVRNKANILLKDINRRNILHLLVLN  541 (641)
Q Consensus       467 t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  541 (641)
                      ||||+|+..++.+++++|+++ |++++..+..|.||||+|+..++    .+++++|+++|++++.++..|.||||+|+..
T Consensus       150 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  229 (285)
T 1wdy_A          150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK  229 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            999999999999999999998 99999999999999999999998    8999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhh-cCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCC
Q psy8763         542 GGGHIKEFAEEVAAVFLGENLIN-LGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESD  609 (641)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d  609 (641)
                      +            +.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|
T Consensus       230 ~------------~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~---~~~~d  283 (285)
T 1wdy_A          230 K------------HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS---TDCGD  283 (285)
T ss_dssp             T------------CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC---SCCSS
T ss_pred             C------------CHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC---CCccc
Confidence            9            9999999999 8999999999999999999999999999999999999   66665

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.6e-42  Score=323.94  Aligned_cols=262  Identities=22%  Similarity=0.252  Sum_probs=212.7

Q ss_pred             CCCcchhhHHHhcCCHHHHHHHHhcCCccccccC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccC
Q psy8763          30 NKKQAVLHLATELNKVPILLILLQYKDMIDILQG-GEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRA  108 (641)
Q Consensus        30 ~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~  108 (641)
                      ..|.||||+|++.|+++++++|+++|++  ++.. +..|.||||+|+..|+.+++++|+++            |++++..
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------------g~~~~~~   68 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRH------------GADPVLR   68 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT------------TCCTTCC
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCC--cccccCCCCCcHHHHHHHcCCHHHHHHHHHc------------CCCCccc
Confidence            3588999999999999999999999974  4444 67899999999999999999999998            8999999


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcC------
Q psy8763         109 CSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ------  182 (641)
Q Consensus       109 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------  182 (641)
                      +..|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|++.|++++..      
T Consensus        69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~  140 (285)
T 1wdy_A           69 KKNGATPFLLAAIAGSVKLLKLFLSKGADV--------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED  140 (285)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT--------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHH
Confidence            999999999999999999999999999987        456888999999999999999999999999999877      


Q ss_pred             ----CCCCCcHHHHHHHcCcHHHHHHHHhc-CCCccccccccCCCCCCcHHHHHHhcCc----HHHHHHHHHcCCCCCcc
Q psy8763         183 ----QFDLSTPVHLACSQGALDIVRLMFNL-QPSEKLVCLNSTDAQKMTPLHCAAMFDR----CDVVQYLIDEGADLNVL  253 (641)
Q Consensus       183 ----~~~~~t~l~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~t~L~~A~~~~~----~~iv~~Ll~~g~~~~~~  253 (641)
                          +..|.||||+|+..|+.+++++|++. +.+     ++..+..|.|||++|+..++    .+++++|+++|++++..
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~  215 (285)
T 1wdy_A          141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-----VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR  215 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-----TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC
T ss_pred             HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-----CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc
Confidence                67788999999999999999999987 655     67778888999999998888    88888999988888766


Q ss_pred             CCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHH
Q psy8763         254 DKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDE  333 (641)
Q Consensus       254 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  333 (641)
                      +..|.||+                                                              |+|+..++.+
T Consensus       216 ~~~g~t~L--------------------------------------------------------------~~A~~~~~~~  233 (285)
T 1wdy_A          216 GERGKTPL--------------------------------------------------------------ILAVEKKHLG  233 (285)
T ss_dssp             CTTSCCHH--------------------------------------------------------------HHHHHTTCHH
T ss_pred             CCCCCcHH--------------------------------------------------------------HHHHHcCCHH
Confidence            65555544                                                              4444445555


Q ss_pred             HHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhcccccc
Q psy8763         334 CARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG  380 (641)
Q Consensus       334 ~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~  380 (641)
                      ++++|++..+++++..+..|.|||++|+..++.+++++|+++|++++
T Consensus       234 ~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~  280 (285)
T 1wdy_A          234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence            55555543555555555556666666666666666666666665554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.3e-41  Score=331.36  Aligned_cols=320  Identities=22%  Similarity=0.286  Sum_probs=256.9

Q ss_pred             eeeccCCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcc
Q psy8763          15 RLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECD   94 (641)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~   94 (641)
                      .+.+...+++.+..+..+.|+||.|++.|+.+.++.|+.... .+++..+..|.||||+|+..|+.++|++|+++     
T Consensus         7 ~l~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----   80 (351)
T 3utm_A            7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN-VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-----   80 (351)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-----
T ss_pred             hhhccCCceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-----
Confidence            334455778888899999999999999999999999998632 47788899999999999999999999999999     


Q ss_pred             hhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHH
Q psy8763          95 WIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK  174 (641)
Q Consensus        95 ~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~  174 (641)
                             |++++..+..|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|++
T Consensus        81 -------g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  145 (351)
T 3utm_A           81 -------GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV--------NAMDLWQFTPLHEAASKNRVEVCSLLLS  145 (351)
T ss_dssp             -------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             -------CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                   9999999999999999999999999999999999987        4568899999999999999999999999


Q ss_pred             cCCCCCcCCCCCCcHHHHH---------------------HHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHh
Q psy8763         175 SGAKISTQQFDLSTPVHLA---------------------CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM  233 (641)
Q Consensus       175 ~g~~~~~~~~~~~t~l~~A---------------------~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~  233 (641)
                      +|++++..+..|.+|+++|                     +..++.+.++.++.....     ....+..+.||||+|+.
T Consensus       146 ~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~t~L~~A~~  220 (351)
T 3utm_A          146 HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-----NFKQPQSHETALHCAVA  220 (351)
T ss_dssp             TTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-----TCCCTTTCCCHHHHHHH
T ss_pred             cCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-----cccCCCCCCCHHHHHHH
Confidence            9999999999999987765                     556666666667665544     24456778899999998


Q ss_pred             c---CcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcc
Q psy8763         234 F---DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMI  310 (641)
Q Consensus       234 ~---~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  310 (641)
                      .   +..+++++|+++|++++..+..|.||||+|+..+                           +.+++++|++.+.  
T Consensus       221 ~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g---------------------------~~~~v~~Ll~~ga--  271 (351)
T 3utm_A          221 SLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA---------------------------HNDVMEVLHKHGA--  271 (351)
T ss_dssp             CCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT---------------------------CHHHHHHHHHTTC--
T ss_pred             HhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcC---------------------------CHHHHHHHHHCCC--
Confidence            8   5578999999999999988888888777776554                           8889999999887  


Q ss_pred             cccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHH
Q psy8763         311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLF  390 (641)
Q Consensus       311 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  390 (641)
                      +++..+..|.||||+|+..|+.+++++|+ +.|++++..+..|.||+++|    ..+++++|.+.+..           .
T Consensus       272 ~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~-----------~  335 (351)
T 3utm_A          272 KMNALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM-----------R  335 (351)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---------------
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc-----------c
Confidence            56667788999999999999999999999 77999999999999998887    56777777775542           2


Q ss_pred             hhcCChHHHHHHhcC
Q psy8763         391 AAEGNLPLHSAVHGG  405 (641)
Q Consensus       391 ~~~~~t~l~~a~~~~  405 (641)
                      ...+.+++..|++.|
T Consensus       336 ~~~~~~~l~~A~~~g  350 (351)
T 3utm_A          336 TSDVDYRLLEASKAG  350 (351)
T ss_dssp             ---------------
T ss_pred             cCcceeehhhhhccC
Confidence            234556677776655

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-42  Score=337.20  Aligned_cols=322  Identities=19%  Similarity=0.187  Sum_probs=197.3

Q ss_pred             ChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHh
Q psy8763         154 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM  233 (641)
Q Consensus       154 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~  233 (641)
                      ..+|..++..|+.+.+..++++...+.    .-.+++.-+...|+.+++++++.          ...+..|.||||+|+.
T Consensus        38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~g~t~L~~Aa~  103 (373)
T 2fo1_E           38 QHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGNDFLGDFNHTNLQIP----------TEPEPESPIKLHTEAA  103 (373)
T ss_dssp             ----------------------------------------------------------------------CCCHHHHHHH
T ss_pred             ccccccccCCccccchhhhhhhhcccc----CccccCCCCCccccccccccccc----------cCCCCCCccHHHHHhc
Confidence            345666667777777777776655442    11244555666677777777653          3345567777777777


Q ss_pred             cCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCccccc
Q psy8763         234 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL  313 (641)
Q Consensus       234 ~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  313 (641)
                      .+. +++++|+.  .+++..+                                                           
T Consensus       104 ~~~-~~~~~L~~--~~~n~~d-----------------------------------------------------------  121 (373)
T 2fo1_E          104 GSY-AITEPITR--ESVNIID-----------------------------------------------------------  121 (373)
T ss_dssp             SSS-CCCSCCST--TTTTTCC-----------------------------------------------------------
T ss_pred             CCc-hHHHHhcc--ccccccC-----------------------------------------------------------
Confidence            443 55555543  2333322                                                           


Q ss_pred             CCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhc
Q psy8763         314 QGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAE  393 (641)
Q Consensus       314 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  393 (641)
                        +..|.||||+|+..|+.+++++|+.                          ..++.|++.|++++        ..+..
T Consensus       122 --~~~g~t~Lh~Aa~~g~~~~v~~Ll~--------------------------~~~~~ll~~ga~vn--------~~d~~  165 (373)
T 2fo1_E          122 --PRHNRTVLHWIASNSSAEKSEDLIV--------------------------HEAKECIAAGADVN--------AMDCD  165 (373)
T ss_dssp             --CSSCCCHHHHHHCTTCCSCCTTHHH--------------------------HHHHHHHHTCCCTT--------CCCTT
T ss_pred             --CcCCCCHHHHHHHCCCHHHHHHHHH--------------------------HHHHHHHhcCCCCc--------CCCCC
Confidence              1234555555555555555555542                          12344555555533        23456


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHH
Q psy8763         394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA  473 (641)
Q Consensus       394 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~  473 (641)
                      |.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.+.  ...+++..+..|.||||+|+
T Consensus       166 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK--LKGDIEELDRNGMTALMIVA  243 (373)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHH--HHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCc--cccChhhcCCCCCCHHHHHH
Confidence            7777777777788888888888888888888888888888888888888888887431  01457778888888888888


Q ss_pred             hcC---ChhHHHHHHHcCCCCCc--------CCCCCCCHHHHHHhcCCHHHHHHHHHcC-CCccccccCCCchhHHHhhc
Q psy8763         474 MFD---RCDVVQYLIDEGADLNV--------LDKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLLVLN  541 (641)
Q Consensus       474 ~~~---~~~~v~~Ll~~g~~~~~--------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~a~~~  541 (641)
                      ..+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..
T Consensus       244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~  323 (373)
T 2fo1_E          244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  323 (373)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHc
Confidence            887   78888888888888876        4667888888888888888888888875 88888888888888888888


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      +            +.+++++|+++|++++.+|..|.|||++|+.+|+.++|++|+++|++
T Consensus       324 g------------~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          324 G------------RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             T------------CHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             C------------CHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            8            88888888888888888888888888888888888888888888875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9e-43  Score=339.20  Aligned_cols=264  Identities=19%  Similarity=0.254  Sum_probs=225.4

Q ss_pred             CCCcchHHHHHHHhCcHHHHHHHHHhcCccccccc-cCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcC
Q psy8763         316 GEHGRTALHIAAIYDFDECARILVKDFGASLKRAC-SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG  394 (641)
Q Consensus       316 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  394 (641)
                      +..|.|+||.|+..+. +++++|+   ..+++..+ ..|.||||+|+..++.+++++|+.                    
T Consensus        91 ~~~g~t~L~~Aa~~~~-~~~~~L~---~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~--------------------  146 (373)
T 2fo1_E           91 EPESPIKLHTEAAGSY-AITEPIT---RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV--------------------  146 (373)
T ss_dssp             ---CCCHHHHHHHSSS-CCCSCCS---TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHH--------------------
T ss_pred             CCCCccHHHHHhcCCc-hHHHHhc---cccccccCCcCCCCHHHHHHHCCCHHHHHHHHH--------------------
Confidence            3456677777776443 5555554   23445555 456666666666666666665554                    


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHh
Q psy8763         395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM  474 (641)
Q Consensus       395 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~  474 (641)
                                   ..++.|++.|++++..+..|.||||+|+..|+.+++++|++.+     .+++..+..|.||||+|+.
T Consensus       147 -------------~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-----a~~~~~~~~g~t~L~~A~~  208 (373)
T 2fo1_E          147 -------------HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-----ADPTIYNKSERSALHQAAA  208 (373)
T ss_dssp             -------------HHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTCCCHHHHHHH
T ss_pred             -------------HHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC-----CCCcccCCCCCCHHHHHHH
Confidence                         1235567999999999999999999999999999999999954     4478899999999999999


Q ss_pred             cCChhHHHHHHHcC---CCCCcCCCCCCCHHHHHHhcC---CHHHHHHHHHcCCCccc--------cccCCCchhHHHhh
Q psy8763         475 FDRCDVVQYLIDEG---ADLNVLDKEKRSPLLLAASRG---GWKTVLTLVRNKANILL--------KDINRRNILHLLVL  540 (641)
Q Consensus       475 ~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~--------~~~~g~t~l~~a~~  540 (641)
                      .++.+++++|+++|   ++++..+..|.||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|+.
T Consensus       209 ~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~  288 (373)
T 2fo1_E          209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ  288 (373)
T ss_dssp             TTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHS
T ss_pred             CCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHH
Confidence            99999999999998   899999999999999999988   89999999999999986        56789999999999


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHhhcC-CcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHH
Q psy8763         541 NGGGHIKEFAEEVAAVFLGENLINLG-ACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIA  619 (641)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A  619 (641)
                      .+            +.+++++|+++| ++++.+|..|.||||+|+..|+.++|++|+++|++   ++..|..|+|||++|
T Consensus       289 ~g------------~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad---~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          289 VS------------NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLA  353 (373)
T ss_dssp             SC------------CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHH
T ss_pred             hC------------CHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccCCCCCCCCHHHHH
Confidence            99            999999999887 99999999999999999999999999999999999   899999999999999


Q ss_pred             HhhCCcceeeeceeeee
Q psy8763         620 SKEGFHYSVSIFQVTYV  636 (641)
Q Consensus       620 ~~~~~~~~~~~l~~~~~  636 (641)
                      +..|+.+++++|+++.+
T Consensus       354 ~~~g~~~iv~~Ll~~~a  370 (373)
T 2fo1_E          354 QANNHHNIVDIFDRCRP  370 (373)
T ss_dssp             HHTTCHHHHHHHHTTC-
T ss_pred             HHcCCHHHHHHHHhcCc
Confidence            99999999999988754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.6e-42  Score=316.49  Aligned_cols=233  Identities=27%  Similarity=0.287  Sum_probs=184.7

Q ss_pred             hHHHhhcCChHHHHHHhcC-------------CHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy8763         387 ISLFAAEGNLPLHSAVHGG-------------DFKAVELCLKSGAKIST-QQFDLSTPVHLACSQGALDIVRLMFNLQPS  452 (641)
Q Consensus       387 ~~~~~~~~~t~l~~a~~~~-------------~~~~~~~Ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~  452 (641)
                      ++..+..|.||||+|+..|             +.+++++|++.|++++. .+..|.||||.|+..|+.+++++|++.+  
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--   80 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS--   80 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT--
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--
Confidence            4567889999999999977             89999999999999865 4789999999999999999999999954  


Q ss_pred             ccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCC-CCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCC
Q psy8763         453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINR  531 (641)
Q Consensus       453 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  531 (641)
                         .+++..+..|.||||+|+..++.+++++|+++|+ +++..+..|.||||+|+..++.+++++|+++|++++.+|..|
T Consensus        81 ---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  157 (253)
T 1yyh_A           81 ---ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG  157 (253)
T ss_dssp             ---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred             ---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence               4478899999999999999999999999999987 999999999999999999999999999999999999999999


Q ss_pred             CchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCC
Q psy8763         532 RNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGE  611 (641)
Q Consensus       532 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~  611 (641)
                      .||||+|+..+            +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..
T Consensus       158 ~t~L~~A~~~~------------~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~  222 (253)
T 1yyh_A          158 KSALHWAAAVN------------NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHM  222 (253)
T ss_dssp             CBHHHHHHHHT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTT
T ss_pred             CCHHHHHHHcC------------CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---ccccccC
Confidence            99999999999            99999999999999999999999999999999999999999999999   8999999


Q ss_pred             CChhHHHHHhhCCcceeeeceeeeeccc
Q psy8763         612 GLTPLHIASKEGFHYSVSIFQVTYVWCS  639 (641)
Q Consensus       612 g~t~l~~A~~~~~~~~~~~l~~~~~~~~  639 (641)
                      |+|||++|+..|+.+++++|....++++
T Consensus       223 g~tpl~~A~~~g~~~i~~~l~~~~~~~~  250 (253)
T 1yyh_A          223 DRLPRDIAQERMHHDIVRLLDLEHHHHH  250 (253)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHC------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHHhhhcc
Confidence            9999999999999999999999877764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.9e-41  Score=316.73  Aligned_cols=222  Identities=24%  Similarity=0.264  Sum_probs=209.7

Q ss_pred             HHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcH
Q psy8763         389 LFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP  468 (641)
Q Consensus       389 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~  468 (641)
                      ..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.+     .+++..+..|.||
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~g~t~  128 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-----AQVNGVTADWHTP  128 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCSSCCCTTCCCH
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-----CCCCCCCCCCCCH
Confidence            45678999999999999999999999999999999999999999999999999999999954     4478899999999


Q ss_pred             HHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhh
Q psy8763         469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE  548 (641)
Q Consensus       469 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  548 (641)
                      ||+|+..++.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+      
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~------  201 (285)
T 3d9h_A          129 LFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ------  201 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTT------
T ss_pred             HHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC------
Confidence            99999999999999999999999865 45999999999999999999999999999999999999999999999      


Q ss_pred             HHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCccee
Q psy8763         549 FAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSV  628 (641)
Q Consensus       549 ~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~  628 (641)
                            +.+++++|+++|++++. +..|.||||+|+..|+.++|++|+++|++   ++.+|..|+|||++|+  ++.+++
T Consensus       202 ------~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~--~~~~~~  269 (285)
T 3d9h_A          202 ------QRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD---TQAKNAEGKRPVELVP--PESPLA  269 (285)
T ss_dssp             ------CHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGSC--TTSHHH
T ss_pred             ------cHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHhc--CccHHH
Confidence                  99999999999999994 89999999999999999999999999999   8999999999999999  456899


Q ss_pred             eeceee
Q psy8763         629 SIFQVT  634 (641)
Q Consensus       629 ~~l~~~  634 (641)
                      ++|++.
T Consensus       270 ~~Ll~~  275 (285)
T 3d9h_A          270 QLFLER  275 (285)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9.5e-42  Score=332.60  Aligned_cols=277  Identities=21%  Similarity=0.219  Sum_probs=230.8

Q ss_pred             CCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhh
Q psy8763          21 SGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKD  100 (641)
Q Consensus        21 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  100 (641)
                      .+.+.+..|..|+||||+|+..|++++|++|+++|+  +++..+..|.||||+|+..|+.++|++|+++           
T Consensus         9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----------   75 (364)
T 3ljn_A            9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGV--SPTIQNRFGCTALHLACKFGCVDTAKYLASV-----------   75 (364)
T ss_dssp             -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-----------
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CccccCCCCCcHHHHHHHcCCHHHHHHHHHC-----------
Confidence            567888999999999999999999999999999997  6678899999999999999999999999999           


Q ss_pred             cCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhh-------------hhccccCCCChHHHHHHhCC--C
Q psy8763         101 FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREE-------------MISLFDAEGNLPLHSAVHGG--D  165 (641)
Q Consensus       101 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------~~~~~~~~~~t~L~~A~~~g--~  165 (641)
                       |++++.  ..|.||||+|+..|+.+++++|++++.+.+.....             ..+..+..|.||||+|+..|  +
T Consensus        76 -g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  152 (364)
T 3ljn_A           76 -GEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEY  152 (364)
T ss_dssp             -CCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGG
T ss_pred             -CCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCch
Confidence             664443  57999999999999999999999994332222221             12236788999999999999  9


Q ss_pred             HHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHH
Q psy8763         166 FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID  245 (641)
Q Consensus       166 ~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~  245 (641)
                      .++|++|+++|++++..+..|.||||+|+..|+.+++++|++++++.....++..+..|.||||+|+..|+.+++++|++
T Consensus       153 ~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  232 (364)
T 3ljn_A          153 LEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE  232 (364)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999885544468889999999999999999999999999


Q ss_pred             cCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccC----------C
Q psy8763         246 EGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQ----------G  315 (641)
Q Consensus       246 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~----------~  315 (641)
                      +|++++..+..|.|||++|+..+                           +.+++++|++.+.......          .
T Consensus       233 ~gad~~~~d~~g~tpL~~A~~~g---------------------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  285 (364)
T 3ljn_A          233 MGIDVNMEDNEHTVPLYLSVRAA---------------------------MVLLTKELLQKTDVFLIQACPYHNGTTVLP  285 (364)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTC---------------------------CHHHHHHHHHHSCHHHHHTCTTBSSSSBCG
T ss_pred             cCCCCCCCCCCCCCHHHHHHHhC---------------------------hHHHHHHHHHcCCchhhhcCcccCcccccc
Confidence            99999999999998888877655                           8999999999876432211          3


Q ss_pred             CCCcchHHHHHHHhCcHHHHHHHHH
Q psy8763         316 GEHGRTALHIAAIYDFDECARILVK  340 (641)
Q Consensus       316 ~~~~~~~l~~a~~~~~~~~~~~Ll~  340 (641)
                      +..++++++.|+..++.+.+..|+.
T Consensus       286 ~~~~~~~l~~aa~~~~~~~v~~ll~  310 (364)
T 3ljn_A          286 DRVVWLDFVPAAADPSKQEVLQLLQ  310 (364)
T ss_dssp             GGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred             cccccccchhhhhccCHHHHHHHHH
Confidence            4456677777777776666666663

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.7e-41  Score=308.05  Aligned_cols=233  Identities=18%  Similarity=0.199  Sum_probs=181.0

Q ss_pred             cccccccCCCcchhhHHHhcC-------------CHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy8763          23 VNTRILNNKKQAVLHLATELN-------------KVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSE   89 (641)
Q Consensus        23 ~~~~~~~~~~~t~L~~A~~~g-------------~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~   89 (641)
                      +|+|.+|..|+||||+|+..|             +.+++++|++.|+.+. +..+..|.||||+|+..|+.++|++|+++
T Consensus         1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   79 (253)
T 1yyh_A            1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEA   79 (253)
T ss_dssp             ----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            478999999999999999988             9999999999998542 34578999999999999999999999999


Q ss_pred             CCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcc-cCCCchhhhhccccCCCChHHHHHHhCCCHHH
Q psy8763          90 QPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE-SIGCSREEMISLFDAEGNLPLHSAVHGGDFKA  168 (641)
Q Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~  168 (641)
                                  |++++..+..|.||||+|+..|+.+++++|+++++ ++        +..+..|.||||+|+..|+.++
T Consensus        80 ------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--------~~~~~~g~t~L~~A~~~~~~~~  139 (253)
T 1yyh_A           80 ------------SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL--------DARMHDGTTPLILAARLAVEGM  139 (253)
T ss_dssp             ------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCT--------TCCCTTCCCHHHHHHHHTCSSH
T ss_pred             ------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--------cccCCCCCcHHHHHHHcChHHH
Confidence                        99999999999999999999999999999999987 44        5678899999999999999999


Q ss_pred             HHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy8763         169 VELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA  248 (641)
Q Consensus       169 v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~  248 (641)
                      +++|++.|++++..+..|.||||+|+..|+.+++++|++++++     ++..+..|.||||+|+..|+.+++++|+++|+
T Consensus       140 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  214 (253)
T 1yyh_A          140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-----KDMQNNREETPLFLAAREGSYETAKVLLDHFA  214 (253)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999988     68889999999999999999999999999999


Q ss_pred             CCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCC
Q psy8763         249 DLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKD  308 (641)
Q Consensus       249 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~  308 (641)
                      +++..+..|.||+++|+..+                           +.+++++|.....
T Consensus       215 ~~~~~d~~g~tpl~~A~~~g---------------------------~~~i~~~l~~~~~  247 (253)
T 1yyh_A          215 NRDITDHMDRLPRDIAQERM---------------------------HHDIVRLLDLEHH  247 (253)
T ss_dssp             CTTCCCTTCCCHHHHHHHTT---------------------------CHHHHHHHHC---
T ss_pred             CccccccCCCCHHHHHHHcC---------------------------CHHHHHHHHHHhh
Confidence            99999999999888887665                           8899999987665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=310.47  Aligned_cols=262  Identities=23%  Similarity=0.308  Sum_probs=173.8

Q ss_pred             ccccCCCcchhhHHHhcCCHHHHHHHHhcCCc---------cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchh
Q psy8763          26 RILNNKKQAVLHLATELNKVPILLILLQYKDM---------IDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWI   96 (641)
Q Consensus        26 ~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~---------~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~   96 (641)
                      ......|.|+||+|+..|+.+.+..++..+..         -.++.++..|+||||+|+..|+.+++++|+++       
T Consensus         9 ~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-------   81 (285)
T 3d9h_A            9 HHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-------   81 (285)
T ss_dssp             ---------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-------
T ss_pred             cccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-------
Confidence            34566788899999998887777776554321         12456678888999999999999999999888       


Q ss_pred             HhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcC
Q psy8763          97 MVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG  176 (641)
Q Consensus        97 ~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g  176 (641)
                           |++++..+..|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|++.|
T Consensus        82 -----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  148 (285)
T 3d9h_A           82 -----GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV--------NGVTADWHTPLFNACVSGSWDCVNLLLQHG  148 (285)
T ss_dssp             -----TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS--------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             -----CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHHcCHHHHHHHHHHCC
Confidence                 8888888888889999999989999999998888886        456788888999999888889999888888


Q ss_pred             CCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCC
Q psy8763         177 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKE  256 (641)
Q Consensus       177 ~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~  256 (641)
                      ++++..+ .|.||||+|+..|+.+++++|++++++     ++..+..|.|||++|+..|+.+++++|+++|++++. +..
T Consensus       149 ~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~  221 (285)
T 3d9h_A          149 ASVQPES-DLASPIHEAARRGHVECVNSLIAYGGN-----IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKG  221 (285)
T ss_dssp             CCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBT
T ss_pred             CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCC
Confidence            8887544 488888888888888888888888877     577888888888888888888888888888887762 333


Q ss_pred             CCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHH
Q psy8763         257 KRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECAR  336 (641)
Q Consensus       257 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  336 (641)
                                                                                    |.||||+|+..++.++++
T Consensus       222 --------------------------------------------------------------g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          222 --------------------------------------------------------------QDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             --------------------------------------------------------------TBCHHHHHHHTTCHHHHH
T ss_pred             --------------------------------------------------------------CCCHHHHHHHcCCHHHHH
Confidence                                                                          445555555555556666


Q ss_pred             HHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhc-cccc
Q psy8763         337 ILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQF-GESI  379 (641)
Q Consensus       337 ~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~  379 (641)
                      +|+ +.|++++.++..|.|||++|+  ++.+++++|+++ ++++
T Consensus       240 ~Ll-~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          240 LLM-DFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASL  280 (285)
T ss_dssp             HHH-HTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred             HHH-HCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence            666 445666666666666666665  334556666655 4443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-39  Score=296.86  Aligned_cols=219  Identities=26%  Similarity=0.334  Sum_probs=207.7

Q ss_pred             cccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcC
Q psy8763          23 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFG  102 (641)
Q Consensus        23 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g  102 (641)
                      +|++..|..|+||||+|+..|+.+++++|+++|+  +++..+..|.||||+|+..|+.+++++|+++            |
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g   67 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA--NIDTCSEDQRTPLMEAAENNHLEAVKYLIKA------------G   67 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT------------T
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCC--CcCccCCCCCCHHHHHHHhCCHHHHHHHHhC------------C
Confidence            5788999999999999999999999999999997  5667788999999999999999999999999            9


Q ss_pred             CCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhc-ccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCc
Q psy8763         103 ASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG-ESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIST  181 (641)
Q Consensus       103 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  181 (641)
                      ++++..+..|.||||.|+..|+.+++++|++.+ .++        +..+..|.||||+|+..|+.+++++|++.|++++.
T Consensus        68 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  139 (237)
T 3b7b_A           68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV--------NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI  139 (237)
T ss_dssp             CCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--------ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            999999999999999999999999999999998 554        45688899999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHH
Q psy8763         182 QQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL  261 (641)
Q Consensus       182 ~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l  261 (641)
                      ++..|.||||+|+..|+.+++++|++++++     ++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+
T Consensus       140 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l  214 (237)
T 3b7b_A          140 RDNEENICLHWAAFSGCVDIAEILLAAKCD-----LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL  214 (237)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHH
Confidence            999999999999999999999999999988     688899999999999999999999999999999999999999999


Q ss_pred             HHHHHcC
Q psy8763         262 LLAASRG  268 (641)
Q Consensus       262 ~~a~~~~  268 (641)
                      ++|+..+
T Consensus       215 ~~A~~~~  221 (237)
T 3b7b_A          215 QCASLNS  221 (237)
T ss_dssp             HHSCTTC
T ss_pred             HHHHHHH
Confidence            9987766

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.6e-40  Score=301.42  Aligned_cols=227  Identities=25%  Similarity=0.245  Sum_probs=211.1

Q ss_pred             HHHhhcCChHHHHHHhcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCC
Q psy8763         388 SLFAAEGNLPLHSAVHGGDFKAVELCLK----SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA  463 (641)
Q Consensus       388 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~----~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~  463 (641)
                      +..+..|.||||.|+..|+.+++++|++    .|.+++..+..|.||||.|+..|+.+++++|++.+.     +++..+.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~   77 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA-----SPMALDR   77 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCT
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC-----CccccCC
Confidence            4567899999999999999999999997    899999999999999999999999999999999554     4788899


Q ss_pred             CCCcHHHHHHhcCChhHHHHHHHcCC----CCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccc-cCCCchhHHH
Q psy8763         464 QKMTPLHCAAMFDRCDVVQYLIDEGA----DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLL  538 (641)
Q Consensus       464 ~~~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~a  538 (641)
                      .|.||||+|+..++.+++++|+++|+    +++..+..|.||||+|+..++.+++++|+++|++++..+ ..|.||||+|
T Consensus        78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA  157 (241)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Confidence            99999999999999999999999987    889999999999999999999999999999999999998 8899999999


Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHH
Q psy8763         539 VLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI  618 (641)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~  618 (641)
                      +..+            +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|+|||++
T Consensus       158 ~~~~------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~  222 (241)
T 1k1a_A          158 VENN------------SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMV  222 (241)
T ss_dssp             HHTT------------CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTT
T ss_pred             HHcC------------CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCcCCCCCCHHHH
Confidence            9999            99999999999999999999999999999999999999999999999   89999999999999


Q ss_pred             HHhhCCcceeeeceee
Q psy8763         619 ASKEGFHYSVSIFQVT  634 (641)
Q Consensus       619 A~~~~~~~~~~~l~~~  634 (641)
                      |+..|+.++++.|.+.
T Consensus       223 A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          223 ARSRRVIDILRGKATR  238 (241)
T ss_dssp             CSSHHHHHHHTC----
T ss_pred             HHhcCcHHHHhhhccC
Confidence            9999999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9.7e-40  Score=307.20  Aligned_cols=228  Identities=25%  Similarity=0.240  Sum_probs=196.0

Q ss_pred             cccccCCCcchhhHHHhcCCHHHHHHHHhcCCccc-cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCC
Q psy8763          25 TRILNNKKQAVLHLATELNKVPILLILLQYKDMID-ILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGA  103 (641)
Q Consensus        25 ~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~  103 (641)
                      ++.+|..|+||||+|++.|+.++|++|+++|+.+. ++..+..|.||||+|+..|+.++|++|+++            |+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------------ga   69 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA------------GA   69 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT------------TC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc------------CC
Confidence            46789999999999999999999999999998543 778889999999999999999999999999            99


Q ss_pred             CcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCch---------------------------------------hh
Q psy8763         104 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSR---------------------------------------EE  144 (641)
Q Consensus       104 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---------------------------------------~~  144 (641)
                      +++..+..|.||||+|+..|+.+++++|++++++.....                                       ..
T Consensus        70 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (282)
T 1oy3_D           70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL  149 (282)
T ss_dssp             CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred             CCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhh
Confidence            999999999999999999999999999999887643211                                       11


Q ss_pred             hhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCC-CCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCC
Q psy8763         145 MISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD-LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ  223 (641)
Q Consensus       145 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  223 (641)
                      .++..+..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+|+..|+.+++++|++++++     ++.++..
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-----~~~~d~~  224 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-----PTARMYG  224 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTT
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-----CcccccC
Confidence            24667889999999999999999999999999999998854 99999999999999999999999988     6889999


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q psy8763         224 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG  269 (641)
Q Consensus       224 ~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~  269 (641)
                      |.||||+|+..++.+++++|+++|++++..+..|.||++++.....
T Consensus       225 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          225 GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             SCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             CCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            9999999999999999999999999999999999999999987654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.5e-41  Score=327.82  Aligned_cols=277  Identities=18%  Similarity=0.185  Sum_probs=201.5

Q ss_pred             cccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHH
Q psy8763         311 DILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLF  390 (641)
Q Consensus       311 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  390 (641)
                      +....+..|.||||+|+..|+.+++++|+ +.+++++..+..|.||||+|+..++.+++++|+++|++++.         
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---------   81 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLI-ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---------   81 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---------
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---------
Confidence            34444555666666666666666666666 44566666665566666655555555555555555553221         


Q ss_pred             hhcCChHHHHHHhcCCHHHHHHHHHC----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC--CccccccccCCCC
Q psy8763         391 AAEGNLPLHSAVHGGDFKAVELCLKS----GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQP--SEKLVCLNSTDAQ  464 (641)
Q Consensus       391 ~~~~~t~l~~a~~~~~~~~~~~Ll~~----g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~--~~~~~~~~~~~~~  464 (641)
                       ..|.||||+|+..|+.+++++|++.    |.+++.                       ++....  .......+..+..
T Consensus        82 -~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~  137 (364)
T 3ljn_A           82 -WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPES-----------------------LLNECDEREVNEIGSHVKHCK  137 (364)
T ss_dssp             -BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHH-----------------------HHTCCCCCCEEEETTEEEEES
T ss_pred             -cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHH-----------------------HHhhcchHhhhhhccccCCCC
Confidence             1344555555555555555555544    222211                       000000  0011223447788


Q ss_pred             CCcHHHHHHhcC--ChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCC-----ccccccCCCchhHH
Q psy8763         465 KMTPLHCAAMFD--RCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN-----ILLKDINRRNILHL  537 (641)
Q Consensus       465 ~~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~l~~  537 (641)
                      |.||||+|+..|  +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++     ++.+|..|.||||+
T Consensus       138 g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~  217 (364)
T 3ljn_A          138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW  217 (364)
T ss_dssp             CCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred             CCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence            999999999999  99999999999999999999999999999999999999999999999     99999999999999


Q ss_pred             HhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCcc---------ccccC
Q psy8763         538 LVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSF---------IINES  608 (641)
Q Consensus       538 a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------~~~~~  608 (641)
                      |+..+            +.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++..         .....
T Consensus       218 A~~~g------------~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  285 (364)
T 3ljn_A          218 AILIN------------WEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP  285 (364)
T ss_dssp             HHTTT------------CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCG
T ss_pred             HHHcC------------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccc
Confidence            99999            9999999999999999999999999999999999999999999987621         12236


Q ss_pred             CCCCChhHHHHHhhCCcceeeecee
Q psy8763         609 DGEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       609 d~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                      +..+.||++.|+..|+.+.+..|++
T Consensus       286 ~~~~~~~l~~aa~~~~~~~v~~ll~  310 (364)
T 3ljn_A          286 DRVVWLDFVPAAADPSKQEVLQLLQ  310 (364)
T ss_dssp             GGCCCCTTSCSSCCHHHHHHHHHHH
T ss_pred             cccccccchhhhhccCHHHHHHHHH
Confidence            7788999999999987766666543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1e-39  Score=298.01  Aligned_cols=223  Identities=29%  Similarity=0.396  Sum_probs=211.4

Q ss_pred             HHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCc
Q psy8763         388 SLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT  467 (641)
Q Consensus       388 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t  467 (641)
                      +..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.+.     +++..+..|.|
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-----~~~~~~~~g~t   79 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA-----LVDPKDAEGST   79 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC-----CCCCCCTTSCC
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCC-----CCCCCCCCCCc
Confidence            3456789999999999999999999999999999999999999999999999999999998544     47888999999


Q ss_pred             HHHHHHhcCChhHHHHHHHcC-CCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCch
Q psy8763         468 PLHCAAMFDRCDVVQYLIDEG-ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI  546 (641)
Q Consensus       468 ~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  546 (641)
                      |||+|+..++.+++++|+++| ++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..+    
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~----  155 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG----  155 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC----
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCC----
Confidence            999999999999999999998 899999999999999999999999999999999999999999999999999999    


Q ss_pred             hhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcc
Q psy8763         547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHY  626 (641)
Q Consensus       547 ~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~  626 (641)
                              ..+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++   ++..|..|+|||++|+.+|+.+
T Consensus       156 --------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~~~~~~~  224 (237)
T 3b7b_A          156 --------CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQVW  224 (237)
T ss_dssp             --------CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHSCTTCHHH
T ss_pred             --------CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC---CCccCCCCCCHHHHHHHHHHHH
Confidence                    99999999999999999999999999999999999999999999999   8999999999999999999875


Q ss_pred             eeee
Q psy8763         627 SVSI  630 (641)
Q Consensus       627 ~~~~  630 (641)
                      .+..
T Consensus       225 ~~~~  228 (237)
T 3b7b_A          225 SALQ  228 (237)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.9e-39  Score=297.26  Aligned_cols=221  Identities=23%  Similarity=0.284  Sum_probs=200.2

Q ss_pred             cccccCCCcchhhHHHhcCCHHHHHHHHh----cCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhh
Q psy8763          25 TRILNNKKQAVLHLATELNKVPILLILLQ----YKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKD  100 (641)
Q Consensus        25 ~~~~~~~~~t~L~~A~~~g~~~~v~~ll~----~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  100 (641)
                      ++.+|..|+||||+|++.|+.+++++|++    .|.  +++..+..|.||||+|+..|+.+++++|+++           
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------   68 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLPSVVRLLVTA-----------   68 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCcccccCCCHHHHHHHcCCHHHHHHHHHc-----------
Confidence            35789999999999999999999999997    665  6677889999999999999999999999999           


Q ss_pred             cCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCC
Q psy8763         101 FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIS  180 (641)
Q Consensus       101 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~  180 (641)
                       |++++..+..|.||||+|+..|+.+++++|++.++.....    ++..+..|.||||+|+..|+.+++++|++.|++++
T Consensus        69 -g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  143 (241)
T 1k1a_A           69 -GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD----LEARNYDGLTALHVAVNTECQETVQLLLERGADID  143 (241)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             -CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc----ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence             9999999999999999999999999999999998832111    25668899999999999999999999999999999


Q ss_pred             cCC-CCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCC
Q psy8763         181 TQQ-FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS  259 (641)
Q Consensus       181 ~~~-~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t  259 (641)
                      ..+ ..|.||||+|+..|+.+++++|++++++     ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus       144 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  218 (241)
T 1k1a_A          144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-----VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT  218 (241)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCC
Confidence            988 7899999999999999999999999988     6888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q psy8763         260 PLLLAASRG  268 (641)
Q Consensus       260 ~l~~a~~~~  268 (641)
                      |+++|+..+
T Consensus       219 pl~~A~~~~  227 (241)
T 1k1a_A          219 PLMVARSRR  227 (241)
T ss_dssp             TTTTCSSHH
T ss_pred             HHHHHHhcC
Confidence            998886554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-40  Score=303.14  Aligned_cols=221  Identities=22%  Similarity=0.244  Sum_probs=177.6

Q ss_pred             hhcCChHHHHHHhcCCHHHHHHHHHCCCC--------CCCCCCCCCcHHHHHHHcCCHH-HHHHHHhcCCCccccccccC
Q psy8763         391 AAEGNLPLHSAVHGGDFKAVELCLKSGAK--------ISTQQFDLSTPVHLACSQGALD-IVRLMFNLQPSEKLVCLNST  461 (641)
Q Consensus       391 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~--------~~~~~~~~~t~l~~a~~~~~~~-~v~~ll~~~~~~~~~~~~~~  461 (641)
                      |..+.++|+.|+..|+.+++++|++.|.+        ++..+..+.|||+.|+..+..+ ++++|++.     +.++|..
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-----Gadvn~~   82 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-----GLGVNVT   82 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C-----CCCTTCC
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-----CCCCCCc
Confidence            44566899999999999999999999876        3556677899999999877654 78888884     5558999


Q ss_pred             CCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhc
Q psy8763         462 DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN  541 (641)
Q Consensus       462 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~  541 (641)
                      |..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..++.+++++|+++|++++.+|..|.||||+|+..
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHh
Q psy8763         542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASK  621 (641)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~  621 (641)
                      +            +.+++++|+++|+++|.++..|.||||+|+..|+.++|++|+++|++   ++.+|..|+|||++|++
T Consensus       163 g------------~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          163 G------------HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS---VQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             T------------CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCSGGGSCT
T ss_pred             C------------CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHh
Confidence            9            88999999999999999999999999999999999999999999999   89999999999999998


Q ss_pred             hCC-cceeeec
Q psy8763         622 EGF-HYSVSIF  631 (641)
Q Consensus       622 ~~~-~~~~~~l  631 (641)
                      +++ .+++++|
T Consensus       228 ~~~i~~lL~~l  238 (269)
T 4b93_B          228 NSKIMELLQVV  238 (269)
T ss_dssp             TCHHHHHTTC-
T ss_pred             CCcHHHHHHHH
Confidence            886 3444443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-40  Score=303.50  Aligned_cols=232  Identities=22%  Similarity=0.275  Sum_probs=166.4

Q ss_pred             CCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCH-HHHHHHHHCCCCCCCCCCCCCcHH
Q psy8763         353 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF-KAVELCLKSGAKISTQQFDLSTPV  431 (641)
Q Consensus       353 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll~~g~~~~~~~~~~~t~l  431 (641)
                      +.++|+.|+..|+.+++++|++.+++........++..+..+.|||+.|+..+.. .++++|++.|++++..+..|.|||
T Consensus        11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpL   90 (269)
T 4b93_B           11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPL   90 (269)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHH
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            3445555555555555555555555433333333455677889999999987765 588999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCH
Q psy8763         432 HLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW  511 (641)
Q Consensus       432 ~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  511 (641)
                      |+|+..|+.+++++|++.+.     +++..+..|.||++.|+..++.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a-----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGA-----NAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTC-----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred             HHHHHcCcHHHHHHHHhcCC-----CcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            99999999999999999554     4788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCC-HH
Q psy8763         512 KTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGR-YN  590 (641)
Q Consensus       512 ~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~  590 (641)
                      +++++|+++|++++.++..|.||||+|+..+            +.+++++|+++|+|++.+|..|+||||+|+++++ .+
T Consensus       166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g------------~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~  233 (269)
T 4b93_B          166 ELVALLLQHGASINASNNKGNTALHEAVIEK------------HVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIME  233 (269)
T ss_dssp             GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTT------------CHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHH
T ss_pred             HHHHHHHHCCCCCCccccCCCcHHHHHHHcC------------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHH
Confidence            9999999999999999999999999999999            9999999999999999999999999999998775 34


Q ss_pred             HHHHHHhcCCC
Q psy8763         591 TVKKLLSSERG  601 (641)
Q Consensus       591 ~v~~Ll~~g~~  601 (641)
                      ++++|...++.
T Consensus       234 lL~~l~~~~~~  244 (269)
T 4b93_B          234 LLQVVPSCVAS  244 (269)
T ss_dssp             HTTC-------
T ss_pred             HHHHHHHhchh
Confidence            44444444444

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.2e-39  Score=292.65  Aligned_cols=224  Identities=24%  Similarity=0.309  Sum_probs=211.8

Q ss_pred             hcCChHHHHHHhcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHH
Q psy8763         392 AEGNLPLHSAVHGGDFKAVELCLKSGAK-ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH  470 (641)
Q Consensus       392 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~  470 (641)
                      ..+.+||+.|+..|+.+.+++|++.+.. ++..+..|.||||.|+..|+.+++++|++.+     .+++..+..|.||||
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~   78 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-----VPVNDKDDAGWSPLH   78 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTSCCHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC-----CCCCCcCCCCCCHHH
Confidence            3578999999999999999999987644 6677889999999999999999999999954     447889999999999


Q ss_pred             HHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHH
Q psy8763         471 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA  550 (641)
Q Consensus       471 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~  550 (641)
                      +|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..+        
T Consensus        79 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--------  150 (231)
T 3aji_A           79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG--------  150 (231)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT--------
T ss_pred             HHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC--------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             HHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeee
Q psy8763         551 EEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSI  630 (641)
Q Consensus       551 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~  630 (641)
                          +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|+|||++|+..++.+++++
T Consensus       151 ----~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~l  223 (231)
T 3aji_A          151 ----NLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQVAKGGLGLILKRL  223 (231)
T ss_dssp             ----CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred             ----CHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence                99999999999999999999999999999999999999999999999   89999999999999999999999999


Q ss_pred             ceeee
Q psy8763         631 FQVTY  635 (641)
Q Consensus       631 l~~~~  635 (641)
                      |++..
T Consensus       224 L~~~~  228 (231)
T 3aji_A          224 AEGEE  228 (231)
T ss_dssp             HHHHH
T ss_pred             Hcccc
Confidence            87653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5e-39  Score=302.33  Aligned_cols=217  Identities=20%  Similarity=0.163  Sum_probs=190.5

Q ss_pred             HHHhhcCChHHHHHHhcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCC
Q psy8763         388 SLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK---ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ  464 (641)
Q Consensus       388 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~---~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~  464 (641)
                      +..+..|.||||+|+..|+.+++++|++.|++   ++..+..|.||||+|+..|+.+++++|++.+     .+++..+..
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~   77 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-----AGVLVAERG   77 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCTT
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCC
Confidence            34567899999999999999999999999988   7888999999999999999999999999954     447889999


Q ss_pred             CCcHHHHHHhcCChhHHHHHHHcCCC-----------------------------------------------CCcCCCC
Q psy8763         465 KMTPLHCAAMFDRCDVVQYLIDEGAD-----------------------------------------------LNVLDKE  497 (641)
Q Consensus       465 ~~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------------------------------------~~~~~~~  497 (641)
                      |.||||+|+..++.+++++|+++|++                                               ++..+..
T Consensus        78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (282)
T 1oy3_D           78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD  157 (282)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred             CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC
Confidence            99999999999999999999998865                                               6778889


Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHcCCCccccccC-CCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCC
Q psy8763         498 KRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSN  576 (641)
Q Consensus       498 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g  576 (641)
                      |.||||+|+..|+.+++++|+++|++++.++.. |.||||+|+..+            +.+++++|+++|++++.+|..|
T Consensus       158 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~------------~~~~v~~Ll~~gad~~~~d~~g  225 (282)
T 1oy3_D          158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ------------AASVLELLLKAGADPTARMYGG  225 (282)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC------------CHHHHHHHHHcCCCCcccccCC
Confidence            999999999999999999999999999999855 999999999999            9999999999999999999999


Q ss_pred             CChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCC
Q psy8763         577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGF  624 (641)
Q Consensus       577 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~  624 (641)
                      .||||+|+.+|+.+++++|+++|++   ++..|..|.|||++|.....
T Consensus       226 ~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          226 RTPLGSALLRPNPILARLLRAHGAP---EPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCC---CCCCC---------------
T ss_pred             CCHHHHHHHcCCcHHHHHHHHcCCC---cCcCCCcccccccccCCccc
Confidence            9999999999999999999999999   89999999999999988764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.5e-38  Score=286.57  Aligned_cols=213  Identities=23%  Similarity=0.326  Sum_probs=199.9

Q ss_pred             CCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCC
Q psy8763          30 NKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRAC  109 (641)
Q Consensus        30 ~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~  109 (641)
                      ..+.||||.|++.|+++++++|++.+.. .++..+..|.||||+|+..|+.+++++|+++            |++++..+
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------------g~~~~~~~   70 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQL------------GVPVNDKD   70 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT------------TCCSCCCC
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh------------CCCCCCcC
Confidence            4578999999999999999999998763 3667789999999999999999999999999            99999999


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcH
Q psy8763         110 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP  189 (641)
Q Consensus       110 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~  189 (641)
                      ..|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus        71 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  142 (231)
T 3aji_A           71 DAGWSPLHIAASAGXDEIVKALLVKGAHV--------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA  142 (231)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCHHHHHHHcCHHHHHHHHHHcCCCC--------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            99999999999999999999999999987        4568899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q psy8763         190 VHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG  268 (641)
Q Consensus       190 l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  268 (641)
                      ||+|+..|+.+++++|++++.+     ++..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|...+
T Consensus       143 L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  216 (231)
T 3aji_A          143 MHRAAAKGNLKMVHILLFYKAS-----TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL  216 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCC-----ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhH
Confidence            9999999999999999999988     6888999999999999999999999999999999999999999998886543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-37  Score=281.31  Aligned_cols=215  Identities=23%  Similarity=0.238  Sum_probs=199.3

Q ss_pred             cCCCceeeeccCCCcccccc-cCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHH
Q psy8763           9 DNKNKSRLIPSSSGVNTRIL-NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV   87 (641)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll   87 (641)
                      |+.+++++++. .|++++.. |..|+||||+|++.|+.+++++|+++|+  +++..+..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~-~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIY-QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA--DANIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEE-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHH-cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            67899999997 79998765 8999999999999999999999999997  56678899999999999999999999999


Q ss_pred             hcCCCcchhHhhhcCC-CcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCH
Q psy8763          88 SEQPECDWIMVKDFGA-SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDF  166 (641)
Q Consensus        88 ~~~~~~~~~~~~~~g~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~  166 (641)
                      ++            +. +++..+..|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.
T Consensus        79 ~~------------~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~  138 (223)
T 2f8y_A           79 RN------------RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV--------NAVDDLGKSALHWAAAVNNV  138 (223)
T ss_dssp             HB------------TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT--------TCBCTTSCBHHHHHHHTTCH
T ss_pred             Hc------------CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC--------cCcCCCCCcHHHHHHHcCCH
Confidence            98            54 78888999999999999999999999999999987        45688899999999999999


Q ss_pred             HHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHc
Q psy8763         167 KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE  246 (641)
Q Consensus       167 ~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~  246 (641)
                      +++++|+++|++++.++..|.||||+|+..|+.+++++|++++++     ++..+..|.|||++|+..++.+++++|+++
T Consensus       139 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~  213 (223)
T 2f8y_A          139 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN-----RDITDHMDRLPRDIAQERMHHDIVRLLDEY  213 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-----CccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence            999999999999999999999999999999999999999999998     688899999999999999999999999999


Q ss_pred             CCCCC
Q psy8763         247 GADLN  251 (641)
Q Consensus       247 g~~~~  251 (641)
                      |+...
T Consensus       214 g~~~~  218 (223)
T 2f8y_A          214 NLVRS  218 (223)
T ss_dssp             TCSSC
T ss_pred             CCCcc
Confidence            98653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.9e-38  Score=286.55  Aligned_cols=219  Identities=26%  Similarity=0.305  Sum_probs=202.6

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccc-CCCCCCcHHHH
Q psy8763         394 GNLPLHSAVHGGDFKAVELCLKSGAKIST-QQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS-TDAQKMTPLHC  471 (641)
Q Consensus       394 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~-~~~~~~t~L~~  471 (641)
                      |.||||.|+..|+.+++++|++.|.++.. .+..|.||||.|+..|+.+++++|++.+..   .+++. .+..|.||||+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~g~t~L~~   78 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN---VNLDDYPDDSGWTPFHI   78 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT---CCGGGCCCTTSCCHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc---ccccccCCCCCCCHHHH
Confidence            68999999999999999999999987655 788999999999999999999999997632   22455 78899999999


Q ss_pred             HHhcCChhHHHHHHHcC--CCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhH
Q psy8763         472 AAMFDRCDVVQYLIDEG--ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF  549 (641)
Q Consensus       472 A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  549 (641)
                      |+..++.+++++|+++|  ++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..+       
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-------  151 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG-------  151 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT-------
T ss_pred             HHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcC-------
Confidence            99999999999999999  899999999999999999999999999999999999999999999999999999       


Q ss_pred             HHHHHHHHHHHHHhhcC-CcccccCCCCCChHHHHHhcCCHHHHHHHH-hcCCCccccccCCCCCChhHHHHHhhCCcce
Q psy8763         550 AEEVAAVFLGENLINLG-ACINLKNNSNESPLHLAARYGRYNTVKKLL-SSERGSFIINESDGEGLTPLHIASKEGFHYS  627 (641)
Q Consensus       550 ~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~  627 (641)
                           +.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+ +.|++   ++..|..|+|||++|...+   +
T Consensus       152 -----~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~---~~~~~~~g~t~l~~A~~~~---~  220 (228)
T 2dzn_A          152 -----SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALNEQ---V  220 (228)
T ss_dssp             -----CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC---SCCBCTTSCBGGGGCSSTT---H
T ss_pred             -----CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC---CCccCCCCCcHHHHHHHHH---H
Confidence                 999999999999 999999999999999999999999999999 89999   8999999999999997654   5


Q ss_pred             eeecee
Q psy8763         628 VSIFQV  633 (641)
Q Consensus       628 ~~~l~~  633 (641)
                      +++|++
T Consensus       221 ~~~l~~  226 (228)
T 2dzn_A          221 KKFFLN  226 (228)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            666554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.4e-39  Score=299.39  Aligned_cols=244  Identities=16%  Similarity=0.166  Sum_probs=216.6

Q ss_pred             CCCccccccCCCceeeeccCCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCH
Q psy8763           1 MGLLSVQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD   80 (641)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~   80 (641)
                      |++-++.+.+.+.+..++.+.  +++.+|..|+||||+|+..|+.+++++|+++|++  ++..  +|.||||+|+..|+.
T Consensus         2 ~dls~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~--~g~t~L~~A~~~g~~   75 (285)
T 3kea_A            2 MDLSRINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL--KNLL--ENEFPLHQAATLEDT   75 (285)
T ss_dssp             CCCTTGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG--GSCC--TTCCHHHHHTTSSSC
T ss_pred             CCcHHHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--CCCC--CCCCHHHHHHHcCCH
Confidence            667778888877777777655  5788999999999999999999999999999984  4444  499999999999999


Q ss_pred             HHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCC-ChHHHH
Q psy8763          81 ECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEG-NLPLHS  159 (641)
Q Consensus        81 ~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~t~L~~  159 (641)
                      +++++|+++            |++++..+..|.||||+|+..|+.+++++|+++|+++        +..+..| .||||+
T Consensus        76 ~~v~~Ll~~------------ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--------~~~~~~g~~t~L~~  135 (285)
T 3kea_A           76 KIVKILLFS------------GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL--------MFYGKTGWKTSFYH  135 (285)
T ss_dssp             HHHHHHHHT------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG--------GGCSSSGGGSHHHH
T ss_pred             HHHHHHHHC------------CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC--------CccCCCCCCCHHHH
Confidence            999999999            9999999999999999999999999999999999997        5668888 799999


Q ss_pred             HHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcH-HHHHHhcCcHH
Q psy8763         160 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP-LHCAAMFDRCD  238 (641)
Q Consensus       160 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~-L~~A~~~~~~~  238 (641)
                      |+..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|++++++     ++..+..|.|| ||+|+..++.+
T Consensus       136 A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad-----~n~~~~~g~t~~L~~A~~~~~~~  209 (285)
T 3kea_A          136 AVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTS-----TNTNNSLLFIPDIKLAIDNKDIE  209 (285)
T ss_dssp             HHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHH-----TCTTCCCBCCTTHHHHHHHTCHH
T ss_pred             HHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCC-----CCcccCCCCChHHHHHHHcCCHH
Confidence            99999999999999999887433 2789999999999999999999999887     68899999998 99999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcc
Q psy8763         239 VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMI  310 (641)
Q Consensus       239 iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~  310 (641)
                      ++++|+++|++++..+.                                  .++..++.+++++|++.+..+
T Consensus       210 ~v~~Ll~~gad~~~~~~----------------------------------~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          210 MLQALFKYDINIYSANL----------------------------------ENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             HHHHHTTSCBCSTTTTG----------------------------------GGGTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCh----------------------------------hhhhcCCHHHHHHHHHcCCCC
Confidence            99999999999987652                                  123356889999999888743

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.1e-37  Score=280.96  Aligned_cols=212  Identities=24%  Similarity=0.300  Sum_probs=192.3

Q ss_pred             CcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCccc-CCC
Q psy8763          32 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR-ACS  110 (641)
Q Consensus        32 ~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~-~~~  110 (641)
                      |.||||+|++.|+.+++++|++.|+.+ .+..+..|.||||+|+..|+.+++++|+++++.          .+++. .+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----------~~~~~~~~~   70 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN----------VNLDDYPDD   70 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTT----------CCGGGCCCT
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhcccc----------ccccccCCC
Confidence            789999999999999999999999743 345788999999999999999999999999211          55555 788


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHH
Q psy8763         111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPV  190 (641)
Q Consensus       111 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l  190 (641)
                      .|.||||+|+..|+.+++++|+++|...+      ++..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus        71 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  144 (228)
T 2dzn_A           71 SGWTPFHIACSVGNLEVVKSLYDRPLKPD------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL  144 (228)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHSSSSCCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcc------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHH
Confidence            99999999999999999999999983332      256688899999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHHHhcC-CCccccccccCCCCCCcHHHHHHhcCcHHHHHHHH-HcCCCCCccCCCCCCHHHHHH
Q psy8763         191 HLACSQGALDIVRLMFNLQ-PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI-DEGADLNVLDKEKRSPLLLAA  265 (641)
Q Consensus       191 ~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll-~~g~~~~~~~~~~~t~l~~a~  265 (641)
                      |+|+..|+.+++++|++++ .+     ++..+..|.||||+|+..++.+++++|+ ++|++++..+..|.||+++|.
T Consensus       145 ~~A~~~~~~~~v~~Ll~~g~~~-----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          145 HRAASVGSLKLIELLCGLGKSA-----VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCC-----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             HHHHHcCCHHHHHHHHhcCccc-----ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence            9999999999999999999 55     6888999999999999999999999999 899999999999999999884

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=285.57  Aligned_cols=229  Identities=19%  Similarity=0.206  Sum_probs=212.0

Q ss_pred             hhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHH
Q psy8763         391 AAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH  470 (641)
Q Consensus       391 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~  470 (641)
                      +..+.++|+.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.++..    ....+..|.||||
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~~~t~L~   81 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV----DQLGGDLNSTPLH   81 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----TCCBTTTTBCHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc----hhhcCCcCCChhH
Confidence            567889999999999999999999999999999999999999999999999999999976542    2234455899999


Q ss_pred             HHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHH
Q psy8763         471 CAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA  550 (641)
Q Consensus       471 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~  550 (641)
                      +|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..+.       
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-------  154 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH-------  154 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC-------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC-------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997773       


Q ss_pred             HHHHHHHHHHHHhhcCCcccccCC-CCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceee
Q psy8763         551 EEVAAVFLGENLINLGACINLKNN-SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVS  629 (641)
Q Consensus       551 ~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~  629 (641)
                          ..+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++   ++..|..|+|||++|+..|+.++++
T Consensus       155 ----~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~v~  227 (240)
T 3eu9_A          155 ----SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN---VDAQNIKGESALDLAKQRKNVWMIN  227 (240)
T ss_dssp             ----SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             ----hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHH
Confidence                46789999999999999997 999999999999999999999999999   8999999999999999999999999


Q ss_pred             eceeeeec
Q psy8763         630 IFQVTYVW  637 (641)
Q Consensus       630 ~l~~~~~~  637 (641)
                      +|++....
T Consensus       228 ~L~~~~~~  235 (240)
T 3eu9_A          228 HLQEARQA  235 (240)
T ss_dssp             HHHHHC--
T ss_pred             HHHHhhhc
Confidence            99887543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=278.45  Aligned_cols=231  Identities=23%  Similarity=0.269  Sum_probs=209.0

Q ss_pred             cccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCC
Q psy8763          25 TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGAS  104 (641)
Q Consensus        25 ~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~  104 (641)
                      ++..|..|.|+|++|++.|+.+++++|++.|+  +++..+..|.||||+|+..|+.+++++|+++            |++
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~~~   67 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGY--DVRQPDKENVTLLHWAAINNRIDLVKYYISK------------GAI   67 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------------TCC
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCC--CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc------------CCc
Confidence            56678999999999999999999999999997  6677889999999999999999999999999            776


Q ss_pred             cccCC-CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCC
Q psy8763         105 LKRAC-SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ  183 (641)
Q Consensus       105 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  183 (641)
                      ++... ..|.||||.|+..|+.+++++|+++|+++        +..+..|.|||++|+..|+.+++++|+++|++++..+
T Consensus        68 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  139 (240)
T 3eu9_A           68 VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP--------SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD  139 (240)
T ss_dssp             TTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             chhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC--------cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccC
Confidence            66554 45999999999999999999999999987        4568889999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCc-HHHHHHHHhcCCCccccccccCCC-CCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHH
Q psy8763         184 FDLSTPVHLACSQGA-LDIVRLMFNLQPSEKLVCLNSTDA-QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPL  261 (641)
Q Consensus       184 ~~~~t~l~~A~~~g~-~~iv~~Ll~~~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l  261 (641)
                      ..|.||||+|+..++ .+++++|++.+.+     ++..+. .|.||||+|+..++.+++++|+++|++++..+..|.||+
T Consensus       140 ~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  214 (240)
T 3eu9_A          140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVS-----VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL  214 (240)
T ss_dssp             TTSCCHHHHHHHHCCSSTTHHHHHHTTCC-----TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHH
T ss_pred             CCCCcHHHHHHHhCChHHHHHHHHhcCCC-----cchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            999999999997766 8999999999988     566665 899999999999999999999999999999999999888


Q ss_pred             HHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCc
Q psy8763         262 LLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDM  309 (641)
Q Consensus       262 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~  309 (641)
                      ++|+..+                           +.+++++|++.+..
T Consensus       215 ~~A~~~~---------------------------~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          215 DLAKQRK---------------------------NVWMINHLQEARQA  235 (240)
T ss_dssp             HHHHHTT---------------------------CHHHHHHHHHHC--
T ss_pred             HHHHHcC---------------------------cHHHHHHHHHhhhc
Confidence            8776655                           89999999988763

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1e-37  Score=281.83  Aligned_cols=210  Identities=28%  Similarity=0.287  Sum_probs=146.6

Q ss_pred             CCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHH
Q psy8763         405 GDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQY  483 (641)
Q Consensus       405 ~~~~~~~~Ll~~g~~~~~~-~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~  483 (641)
                      |+.+++++|++.|++++.. +..|.||||.|+..|+.+++++|++.+.     +++..+..|.||||+|+..++.+++++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~   76 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-----DANIQDNMGRTPLHAAVSADAQGVFQI   76 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            4555666677777766654 5667777777777777777777776433     356666677777777777777777777


Q ss_pred             HHHcCC-CCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHH
Q psy8763         484 LIDEGA-DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENL  562 (641)
Q Consensus       484 Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~L  562 (641)
                      |+++|. +++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..+            +.+++++|
T Consensus        77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~L  144 (223)
T 2f8y_A           77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN------------NVDAAVVL  144 (223)
T ss_dssp             HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT------------CHHHHHHH
T ss_pred             HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC------------CHHHHHHH
Confidence            777765 66666777777777777777777777777777777777777777777777777            66777777


Q ss_pred             hhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeeceee
Q psy8763         563 INLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVT  634 (641)
Q Consensus       563 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~  634 (641)
                      +++|++++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.|||++|+..|+.+++++|+++
T Consensus       145 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~  213 (223)
T 2f8y_A          145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRDIAQERMHHDIVRLLDEY  213 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence            777777777777777777777777777777777777776   666777777777777777777777777654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=6.7e-37  Score=285.76  Aligned_cols=254  Identities=17%  Similarity=0.094  Sum_probs=219.4

Q ss_pred             cHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHH
Q psy8763         331 FDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAV  410 (641)
Q Consensus       331 ~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  410 (641)
                      ..++.++|. ..  +++..+..|.||||+|+..++.+++++|++.|++++..          +|.||||+|+..|+.+++
T Consensus        12 ~~~v~~lL~-~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~g~t~L~~A~~~g~~~~v   78 (285)
T 3kea_A           12 SKQLKSFLS-SK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL----------ENEFPLHQAATLEDTKIV   78 (285)
T ss_dssp             HHHHHHHHH-ST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----------TTCCHHHHHTTSSSCHHH
T ss_pred             HHHHHHHHH-hC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----------CCCCHHHHHHHcCCHHHH
Confidence            345555555 43  57888999999999999999999999999999886543          389999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCC-CcHHHHHHhcCChhHHHHHHHcCC
Q psy8763         411 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQK-MTPLHCAAMFDRCDVVQYLIDEGA  489 (641)
Q Consensus       411 ~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~g~  489 (641)
                      ++|+++|++++..+..|.||||.|+..|+.+++++|++.     +.+++..+..| .||||+|+..++.+++++|+++|+
T Consensus        79 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~  153 (285)
T 3kea_A           79 KILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP  153 (285)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999995     45588899999 799999999999999999999998


Q ss_pred             CCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCch-hHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCc
Q psy8763         490 DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNI-LHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC  568 (641)
Q Consensus       490 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~  568 (641)
                      ++... ..|.||||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+..+            +.+++++|+++|++
T Consensus       154 ~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~------------~~~~v~~Ll~~gad  220 (285)
T 3kea_A          154 STFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK------------DIEMLQALFKYDIN  220 (285)
T ss_dssp             TTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHT------------CHHHHHHHTTSCBC
T ss_pred             ccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcC------------CHHHHHHHHHcCCC
Confidence            87422 389999999999999999999999999999999999998 99999999            99999999999999


Q ss_pred             ccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcce
Q psy8763         569 INLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYS  627 (641)
Q Consensus       569 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~  627 (641)
                      ++.+|.       .|+..|+.++|++|+++|++   +...  ...+.+.++......++
T Consensus       221 ~~~~~~-------~a~~~~~~~iv~~Ll~~g~~---~~~~--~~~~~~~~~~~~~~~~i  267 (285)
T 3kea_A          221 IYSANL-------ENVLLDDAEIAKMIIEKHVE---YKSD--SYTKDLDIVKNNKLDEI  267 (285)
T ss_dssp             STTTTG-------GGGTTTCHHHHHHHHHHHHH---HTTC--TTTTTCHHHHTCSHHHH
T ss_pred             CCCCCh-------hhhhcCCHHHHHHHHHcCCC---CCCc--cccchHHHHhhhhHHHH
Confidence            999883       56889999999999999987   3322  23345565555544443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.8e-37  Score=281.14  Aligned_cols=220  Identities=20%  Similarity=0.186  Sum_probs=193.0

Q ss_pred             ccccCCCcchhhHHHhcCCHHHHHHHHhcCCcc--ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCC
Q psy8763          26 RILNNKKQAVLHLATELNKVPILLILLQYKDMI--DILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGA  103 (641)
Q Consensus        26 ~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~--~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~  103 (641)
                      +.+|..|+||||+|+..|+.+++++|++.+...  +++..+..|.||||+|+..|+.+++++|+++            |+
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~   69 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA------------GC   69 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC------------CC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc------------CC
Confidence            457899999999999999999999999987642  6788889999999999999999999999999            99


Q ss_pred             CcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCC
Q psy8763         104 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ  183 (641)
Q Consensus       104 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  183 (641)
                      +++..+..|.||||+|+..|+.+++++|++.|+++..  ...++..+..|.||||+|+..|+.++|++|+++|++++..+
T Consensus        70 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  147 (236)
T 1ikn_D           70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL--HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE  147 (236)
T ss_dssp             CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSS--SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhH--HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            9999999999999999999999999999999986532  22346678899999999999999999999999999999999


Q ss_pred             C-CCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCC--ccCCCCCCH
Q psy8763         184 F-DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN--VLDKEKRSP  260 (641)
Q Consensus       184 ~-~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~--~~~~~~~t~  260 (641)
                      . .|.||||+|+..|+.+++++|++++++     ++..+..|.|||++|+..++.+++++|+++|++..  ..+..+.++
T Consensus       148 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~  222 (236)
T 1ikn_D          148 PCNGRTALHLAVDLQNPDLVSLLLKCGAD-----VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES  222 (236)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHH
Confidence            7 999999999999999999999999988     68899999999999999999999999999999775  666677766


Q ss_pred             HHHH
Q psy8763         261 LLLA  264 (641)
Q Consensus       261 l~~a  264 (641)
                      ....
T Consensus       223 ~~~~  226 (236)
T 1ikn_D          223 YDTE  226 (236)
T ss_dssp             CCCC
T ss_pred             Hhhh
Confidence            5433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-37  Score=293.88  Aligned_cols=214  Identities=24%  Similarity=0.339  Sum_probs=198.0

Q ss_pred             hcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHH
Q psy8763         392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC  471 (641)
Q Consensus       392 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~  471 (641)
                      ..+.|+|+.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.+     .+++..+..|.||||+
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~g~tpL~~  112 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG-----ANINQPDNEGWIPLHA  112 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCcHHHH
Confidence            45678999999999999999999999999999999999999999999999999999954     4488899999999999


Q ss_pred             HHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHc-CCCccc------------------------
Q psy8763         472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN-KANILL------------------------  526 (641)
Q Consensus       472 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~------------------------  526 (641)
                      |+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+.. |.+++.                        
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999999999999999999999999999999999887754 555443                        


Q ss_pred             --cccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccc
Q psy8763         527 --KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI  604 (641)
Q Consensus       527 --~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  604 (641)
                        .+..|.||||+|+..+            +.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++   
T Consensus       193 ~~~~~~g~t~L~~A~~~g------------~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad---  257 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKG------------YTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD---  257 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHT------------CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             hhhcCCCCCHHHHHHHCC------------cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC---
Confidence              4578999999999999            99999999999999999999999999999999999999999999999   


Q ss_pred             cccCCCCCChhHHHHHhhCCc
Q psy8763         605 INESDGEGLTPLHIASKEGFH  625 (641)
Q Consensus       605 ~~~~d~~g~t~l~~A~~~~~~  625 (641)
                      ++..|..|+|||++|.+....
T Consensus       258 ~~~~d~~g~t~l~~A~~~~~~  278 (299)
T 1s70_B          258 MEAVNKVGQTAFDVADEDILG  278 (299)
T ss_dssp             TTCCCTTSCCTTTSCCSGGGH
T ss_pred             CCCcCCCCCCHHHHHHHHHHH
Confidence            899999999999999775433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-36  Score=287.50  Aligned_cols=238  Identities=22%  Similarity=0.326  Sum_probs=207.3

Q ss_pred             CCCccccccCCCceeeeccCCC-cc-------cccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHH
Q psy8763           1 MGLLSVQSDNKNKSRLIPSSSG-VN-------TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALH   72 (641)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~   72 (641)
                      |.|.+++.+..+.++.++.+.. ..       ....+..|.||||+|+..|++++|++|+++|+  +++..+..|.||||
T Consensus         1 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~   78 (299)
T 1s70_B            1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA--DINYANVDGLTALH   78 (299)
T ss_dssp             CCSHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCC--CTTCBCTTCCBHHH
T ss_pred             CchhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHH
Confidence            5666777777666665553221 11       12235577899999999999999999999997  66778899999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCC
Q psy8763          73 IAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAE  152 (641)
Q Consensus        73 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  152 (641)
                      +|+..|+.+++++|+++            |++++..+..|.||||+|+..|+.+++++|+++|+++        +..+..
T Consensus        79 ~A~~~g~~~~v~~Ll~~------------ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~--------~~~~~~  138 (299)
T 1s70_B           79 QACIDDNVDMVKFLVEN------------GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV--------GAVNSE  138 (299)
T ss_dssp             HHHHTTCHHHHHHHHHT------------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTT
T ss_pred             HHHHcCCHHHHHHHHHC------------CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC--------CCcCCC
Confidence            99999999999999999            9999999999999999999999999999999999987        456889


Q ss_pred             CChHHHHHHhCCCHHHHHHHHH-cCCCCC--------------------------cCCCCCCcHHHHHHHcCcHHHHHHH
Q psy8763         153 GNLPLHSAVHGGDFKAVELCLK-SGAKIS--------------------------TQQFDLSTPVHLACSQGALDIVRLM  205 (641)
Q Consensus       153 ~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~--------------------------~~~~~~~t~l~~A~~~g~~~iv~~L  205 (641)
                      |.|||++|+..|+.++++.++. .|.+++                          ..+..|.||||+|+..|+.+++++|
T Consensus       139 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  218 (299)
T 1s70_B          139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL  218 (299)
T ss_dssp             SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999999987765 344432                          3456789999999999999999999


Q ss_pred             HhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q psy8763         206 FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA  265 (641)
Q Consensus       206 l~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~  265 (641)
                      ++++++     ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|.
T Consensus       219 l~~g~d-----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          219 IQARYD-----VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             HTTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             HHcCCC-----CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            999988     6889999999999999999999999999999999999999999999884

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-37  Score=294.29  Aligned_cols=258  Identities=15%  Similarity=0.055  Sum_probs=193.8

Q ss_pred             HHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHh---------HHHhhcCChHHHHHH
Q psy8763         332 DECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMI---------SLFAAEGNLPLHSAV  402 (641)
Q Consensus       332 ~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~---------~~~~~~~~t~l~~a~  402 (641)
                      .+++++|+ +.|++++..+..|.++++     |+.++++.|++.|++++...-...         ........+..+.++
T Consensus        32 ~dlv~~ll-~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~  105 (327)
T 1sw6_A           32 HDLTSDFL-SSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF  105 (327)
T ss_dssp             TTCCCSTT-TSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CH
T ss_pred             CchHHHHh-hCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHH
Confidence            34455555 556666666666666654     566666666666655432110000         000111223357777


Q ss_pred             hcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCC---h
Q psy8763         403 HGGDFKAVELCLKSGAKIST-QQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR---C  478 (641)
Q Consensus       403 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~---~  478 (641)
                      ..+..+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+     .+++.++..|.||||+|+..++   .
T Consensus       106 ~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-----ad~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-----SNRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             HHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             HhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHhcccccH
Confidence            78888999999999999999 8999999999999999999999999954     4588999999999999999998   7


Q ss_pred             hHHHHHHHcC-CCCCcCCCCCCCHHHHHHh----cCCHHHHHHHHHc--------------------CCCccccccCCCc
Q psy8763         479 DVVQYLIDEG-ADLNVLDKEKRSPLLLAAS----RGGWKTVLTLVRN--------------------KANILLKDINRRN  533 (641)
Q Consensus       479 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~~~~g~t  533 (641)
                      ++++.|++.+ ++++.++..|+||||+|+.    .++.+++++|++.                    |++++.++..|.|
T Consensus       181 ~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t  260 (327)
T 1sw6_A          181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD  260 (327)
T ss_dssp             TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------C
T ss_pred             HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCC
Confidence            8888998886 7899999999999999999    8999999999987                    8999999999999


Q ss_pred             hhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCC
Q psy8763         534 ILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGL  613 (641)
Q Consensus       534 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~  613 (641)
                      |||.|+.                  +++|+++  +++.+|..|+||||+|+.+|+.++|++|+++|++   ++.+|..|+
T Consensus       261 ~L~~a~~------------------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~  317 (327)
T 1sw6_A          261 SILENLD------------------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGL  317 (327)
T ss_dssp             HHHHHCS------------------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred             hhHHHHH------------------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCC
Confidence            9999873                  6778887  6899999999999999999999999999999999   899999999


Q ss_pred             hhHHHHHhhC
Q psy8763         614 TPLHIASKEG  623 (641)
Q Consensus       614 t~l~~A~~~~  623 (641)
                      ||||+|+.+|
T Consensus       318 TpL~~A~~~g  327 (327)
T 1sw6_A          318 RPVDFGAGLE  327 (327)
T ss_dssp             CGGGGTCC--
T ss_pred             CHHHHHHhcC
Confidence            9999998875

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=3.7e-35  Score=266.65  Aligned_cols=197  Identities=22%  Similarity=0.273  Sum_probs=183.0

Q ss_pred             cCChHHHHHHhcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHH
Q psy8763         393 EGNLPLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC  471 (641)
Q Consensus       393 ~~~t~l~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~  471 (641)
                      .|.||||.|+..|+.+++++|++. |++++..+..|.||||.|+..|+.+++++|++.++.......+..+..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            488999999999999999999998 9999999999999999999999999999999977654333346778899999999


Q ss_pred             HHhcCChhHHHHHHHcCCCCCcCCC-------------CCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHH
Q psy8763         472 AAMFDRCDVVQYLIDEGADLNVLDK-------------EKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL  538 (641)
Q Consensus       472 A~~~~~~~~v~~Ll~~g~~~~~~~~-------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  538 (641)
                      |+..++.+++++|+++|++++..+.             .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999998765             799999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhhHHHHHHHHHHH----HHHhhcCCcc------cccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         539 VLNGGGHIKEFAEEVAAVFLG----ENLINLGACI------NLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~----~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      +..+            +.+++    ++|+++|+++      +.+|..|.||||+|+..|+.++|++|+++|+.
T Consensus       162 ~~~~------------~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          162 ILQP------------NKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             HTCS------------CHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHcC------------ChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999            55555    9999999988      68999999999999999999999999999976

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.6e-36  Score=274.73  Aligned_cols=218  Identities=21%  Similarity=0.119  Sum_probs=193.3

Q ss_pred             HHhhcCChHHHHHHhcCCHHHHHHHHHCCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCC
Q psy8763         389 LFAAEGNLPLHSAVHGGDFKAVELCLKSGA----KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ  464 (641)
Q Consensus       389 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~----~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~  464 (641)
                      ..+..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||.|+..|+.+++++|++.+     .+++..+..
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~   77 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-----CDPELRDFR   77 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-----CCSCCCCTT
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCC
Confidence            356789999999999999999999998765    78999999999999999999999999999854     447889999


Q ss_pred             CCcHHHHHHhcCChhHHHHHHHcCCC------CCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCcccccc-CCCchhHH
Q psy8763         465 KMTPLHCAAMFDRCDVVQYLIDEGAD------LNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDI-NRRNILHL  537 (641)
Q Consensus       465 ~~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~  537 (641)
                      |.||||+|+..++.+++++|+++|++      ++..+..|.||||+|+..++.+++++|+++|++++.++. .|.||||+
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  157 (236)
T 1ikn_D           78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL  157 (236)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence            99999999999999999999999976      466788999999999999999999999999999999997 99999999


Q ss_pred             HhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHH
Q psy8763         538 LVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLH  617 (641)
Q Consensus       538 a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~  617 (641)
                      |+..+            +.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|+++. ....+..|.||.+
T Consensus       158 A~~~~------------~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~-~~~~~~~~~~~~~  224 (236)
T 1ikn_D          158 AVDLQ------------NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL-QMLPESEDEESYD  224 (236)
T ss_dssp             HHHTT------------CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG-SSCCCCCTTTCCC
T ss_pred             HHHcC------------CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh-hcCCccchHHHHh
Confidence            99999            9999999999999999999999999999999999999999999999842 3578999999998


Q ss_pred             HHHhhCC
Q psy8763         618 IASKEGF  624 (641)
Q Consensus       618 ~A~~~~~  624 (641)
                      .+.....
T Consensus       225 ~~~~~~~  231 (236)
T 1ikn_D          225 TESEFTE  231 (236)
T ss_dssp             CC-----
T ss_pred             hhccccc
Confidence            7765543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5.6e-34  Score=252.60  Aligned_cols=193  Identities=20%  Similarity=0.177  Sum_probs=180.2

Q ss_pred             cCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccC
Q psy8763          29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRA  108 (641)
Q Consensus        29 ~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~  108 (641)
                      +..+.||||.|+..|+.+.++.|++.+. .+++..+..|.||||+|+..|+.+++++|+++            |++++..
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~~~~~~   68 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR------------GADINLQ   68 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT------------TCCTTCC
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------------CCCCCCC
Confidence            4678999999999999999999999886 46778889999999999999999999999999            9999999


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHh-cccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcC-CCCCcCCCCC
Q psy8763         109 CSNGYYPIHDAAKNASSKTMEVFLQF-GESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG-AKISTQQFDL  186 (641)
Q Consensus       109 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~  186 (641)
                      +..|.||||+|+..|+.+++++|++. ++++        +..+..|.||||+|+..|+.+++++|++.| ++++.++..|
T Consensus        69 ~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  140 (201)
T 3hra_A           69 NSISDSPYLYAGAQGRTEILAYMLKHATPDL--------NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG  140 (201)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT--------TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCccc--------ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC
Confidence            99999999999999999999999954 4454        567889999999999999999999999999 9999999999


Q ss_pred             CcHHHHHHHcCc-----HHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy8763         187 STPVHLACSQGA-----LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG  247 (641)
Q Consensus       187 ~t~l~~A~~~g~-----~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g  247 (641)
                      .||||+|+..++     .+++++|++++++     ++..+..|.|||++|+..|+.+++++|+++|
T Consensus       141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          141 YTALIEAVGLREGNQLYQDIVKLLMENGAD-----QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCHHHHHHHhccchhhHHHHHHHHHHCCCC-----CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999999998     9999999999988     6889999999999999999999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1e-35  Score=277.28  Aligned_cols=240  Identities=16%  Similarity=0.145  Sum_probs=175.1

Q ss_pred             CCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCc--cccc----cCCCCCchHHHHHHHc---CCHHHHHHHHhcC
Q psy8763          20 SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDM--IDIL----QGGEHGRTALHIAAIY---DFDECARILVSEQ   90 (641)
Q Consensus        20 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~--~~~~----~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~~   90 (641)
                      |.++..+..|..|+||||+|++.|+.++|+.|++++..  .+++    ..+..|.||||+|+..   |+.++|++|++++
T Consensus         1 S~~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g   80 (273)
T 2pnn_A            1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA   80 (273)
T ss_dssp             ----------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred             CCcccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence            45777888999999999999999999999999875421  1232    3478999999999987   9999999999984


Q ss_pred             CCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhh------hhccccCCCChHHHHHHhCC
Q psy8763          91 PECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREE------MISLFDAEGNLPLHSAVHGG  164 (641)
Q Consensus        91 ~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~------~~~~~~~~~~t~L~~A~~~g  164 (641)
                      +...... ..........+..|.||||+|+..|+.+++++|+++|++++.....      .....+..|.||||+|+..|
T Consensus        81 a~~~~~~-~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g  159 (273)
T 2pnn_A           81 RKTDSLK-QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN  159 (273)
T ss_dssp             HHTTCHH-HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT
T ss_pred             ccccchh-HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC
Confidence            3211100 0012223335678999999999999999999999999998543210      00111237999999999999


Q ss_pred             CHHHHHHHHH---cCCCCCcCCCCCCcHHHHHHHcCc---------HHHHHHHHhcCCCccc--cccccCCCCCCcHHHH
Q psy8763         165 DFKAVELCLK---SGAKISTQQFDLSTPVHLACSQGA---------LDIVRLMFNLQPSEKL--VCLNSTDAQKMTPLHC  230 (641)
Q Consensus       165 ~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~A~~~g~---------~~iv~~Ll~~~~~~~~--~~~~~~~~~~~t~L~~  230 (641)
                      +.++|++|++   .|++++.++..|+||||+|+..|+         .+++++|++++++...  ..++..+..|.|||++
T Consensus       160 ~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~  239 (273)
T 2pnn_A          160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL  239 (273)
T ss_dssp             CHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             CHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence            9999999999   999999999999999999999998         8999999999877310  0013578999999999


Q ss_pred             HHhcCcHHHHHHHHHcCC-CCCccCCCCCCH
Q psy8763         231 AAMFDRCDVVQYLIDEGA-DLNVLDKEKRSP  260 (641)
Q Consensus       231 A~~~~~~~iv~~Ll~~g~-~~~~~~~~~~t~  260 (641)
                      |+..|+.+++++|+++|+ |+......+.+|
T Consensus       240 A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          240 AASSGKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHHTTCHHHHHHHHHHHTC------------
T ss_pred             HHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence            999999999999999999 777666655544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.1e-34  Score=242.32  Aligned_cols=156  Identities=32%  Similarity=0.361  Sum_probs=134.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhc
Q psy8763         429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR  508 (641)
Q Consensus       429 t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  508 (641)
                      ++|+.|++.|+.++|++|++.     +.++|.+|..|.||||+|+..++.+++++|+++|++++.++..|+||||+|+..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-----Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-----GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc
Confidence            467788888888888888874     344778888888888888888889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCC
Q psy8763         509 GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGR  588 (641)
Q Consensus       509 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  588 (641)
                      |+.+++++|+++|++++.+|..|+||||+|+..+            +.+++++|+++|++++.+|..|+||||+|+.+|+
T Consensus        81 g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g------------~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG------------HKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC------------CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999999988            8889999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q psy8763         589 YNTVKKLLSSERG  601 (641)
Q Consensus       589 ~~~v~~Ll~~g~~  601 (641)
                      .++|++|+++||+
T Consensus       149 ~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          149 EEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHCCCC
Confidence            9999999999987

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.3e-33  Score=248.70  Aligned_cols=195  Identities=19%  Similarity=0.214  Sum_probs=105.2

Q ss_pred             cCChHHHHHHhcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHH
Q psy8763         393 EGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC  471 (641)
Q Consensus       393 ~~~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~  471 (641)
                      .+.|||+.|+..|+.+.++.|+..+. +++..+..|.||||.|+..|+.+++++|++.+     .+++..+..|.||||+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~l~~   78 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG-----ADINLQNSISDSPYLY   78 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHH
Confidence            34555555555555555555555543 55555555555555555555555555555532     2244555555555555


Q ss_pred             HHhcCChhHHHHHH-HcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcC-CCccccccCCCchhHHHhhcCCCchhhH
Q psy8763         472 AAMFDRCDVVQYLI-DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK-ANILLKDINRRNILHLLVLNGGGHIKEF  549 (641)
Q Consensus       472 A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~  549 (641)
                      |+..++.+++++|+ ..+++++..+..|.||||+|+..++.+++++|+++| ++++.+|..|.||||+|+..+.....  
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~--  156 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL--  156 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH--
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh--
Confidence            55555555555555 334455555555555555555555555555555555 55555555555555555555421100  


Q ss_pred             HHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcC
Q psy8763         550 AEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSE  599 (641)
Q Consensus       550 ~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  599 (641)
                           ..+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       157 -----~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          157 -----YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             -----HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             -----HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                 245555555555555555555555555555555555555555544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.2e-33  Score=238.83  Aligned_cols=159  Identities=28%  Similarity=0.441  Sum_probs=148.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhcc
Q psy8763          69 TALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL  148 (641)
Q Consensus        69 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  148 (641)
                      ++|+.||+.|+.++|++|+++            |++++.++..|+||||+|+..++.+++++|++.|+++        +.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~------------Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~--------~~   65 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN------------GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV--------NA   65 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--------TC
T ss_pred             HHHHHHHHcCCHHHHHHHHHC------------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch--------hh
Confidence            479999999999999999999            9999999999999999999999999999999999997        56


Q ss_pred             ccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHH
Q psy8763         149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL  228 (641)
Q Consensus       149 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L  228 (641)
                      .+..|.||||+|+..|+.++|++|+++|++++.++..|+||||+|+..|+.++|++|++++++     ++..+..|.|||
T Consensus        66 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~~d~~G~TpL  140 (169)
T 4gpm_A           66 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-----VNTSDSDGRTPL  140 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHH
T ss_pred             hccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----ccccCCCCCCHH
Confidence            788999999999999999999999999999999999999999999999999999999999998     688999999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCCc
Q psy8763         229 HCAAMFDRCDVVQYLIDEGADLNV  252 (641)
Q Consensus       229 ~~A~~~~~~~iv~~Ll~~g~~~~~  252 (641)
                      ++|+..|+.+++++|+++|++++.
T Consensus       141 ~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          141 DLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHTTCHHHHHHHHTC------
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCC
Confidence            999999999999999999999874

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-35  Score=279.88  Aligned_cols=273  Identities=16%  Similarity=0.103  Sum_probs=152.9

Q ss_pred             ccccCCCceeeeccCCCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHH
Q psy8763           6 VQSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARI   85 (641)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~   85 (641)
                      +.-...+++++++. .|++++.+|..|.|+++     |+.++|++|+++|++++.        ++++.|+......    
T Consensus        27 ~~~~~~dlv~~ll~-~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~--------~~~~~a~~~~~~~----   88 (327)
T 1sw6_A           27 IITFTHDLTSDFLS-SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI--------QEMPTSLNNDSSN----   88 (327)
T ss_dssp             EEECCTTCCCSTTT-SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------------
T ss_pred             hhhhcCchHHHHhh-CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc--------ccchHhhhccccc----
Confidence            33445567777776 78888888888888877     888888888888864321        2343333221000    


Q ss_pred             HHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhcc-ccCCCChHHHHHHhCC
Q psy8763          86 LVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL-FDAEGNLPLHSAVHGG  164 (641)
Q Consensus        86 Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~~~~~~t~L~~A~~~g  164 (641)
                                        .-........+.+|.|+..+..++++.|++.|++++        . .+..|.||||+|+..|
T Consensus        89 ------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn--------~~~d~~g~TpLh~Aa~~g  142 (327)
T 1sw6_A           89 ------------------RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN--------IPVDEHGNTPLHWLTSIA  142 (327)
T ss_dssp             ---------------------------------CHHHHHHHHHHHCTTSCCCSC--------SCCSTTCCCHHHHHHHTT
T ss_pred             ------------------ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcc--------cccCCCCCcHHHHHHHcC
Confidence                              000000111123455555555555555555555542        2 3555555555555555


Q ss_pred             CHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCc---HHHHHHHHhcCCCccccccccCCCCCCcHHHHHHh----cCcH
Q psy8763         165 DFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA---LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM----FDRC  237 (641)
Q Consensus       165 ~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~----~~~~  237 (641)
                      +.++|++|+++|++++.++..|+||||+|+..|+   .++++.|++++...    ++..+..|.||||+|+.    .|+.
T Consensus       143 ~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~----~~~~d~~g~tpLh~A~~~~~~~g~~  218 (327)
T 1sw6_A          143 NLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----LILEDSMNRTILHHIIITSGMTGCS  218 (327)
T ss_dssp             CHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----GGEECTTCCCHHHHHHHHHTSTTCH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc----ccCCCCCCCCHHHHHHHHccccccH
Confidence            5555555555555555555555555555555555   34444444443211    44555555555555555    5555


Q ss_pred             HHHHHHHHc--------------------CCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCCh
Q psy8763         238 DVVQYLIDE--------------------GADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKV  297 (641)
Q Consensus       238 ~iv~~Ll~~--------------------g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~  297 (641)
                      +++++|++.                    |++++..+..|.||++.++.                               
T Consensus       219 ~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~-------------------------------  267 (327)
T 1sw6_A          219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-------------------------------  267 (327)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-------------------------------
T ss_pred             HHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH-------------------------------
Confidence            555555554                    88888888888888887631                               


Q ss_pred             hHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcC
Q psy8763         298 PILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNA  364 (641)
Q Consensus       298 ~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~  364 (641)
                        +++|++.    +++..+..|.||||+|+..|+.+++++|+ +.|++++..+..|.|||++|+..|
T Consensus       268 --~~~Ll~~----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll-~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          268 --LKWIIAN----MLNAQDSNGDTCLNIAARLGNISIVDALL-DYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             --HHHHHHH----TTTCCCTTSCCHHHHHHHHCCHHHHHHHH-HTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             --HHHHHHh----CCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHhcC
Confidence              6667666    35566778999999999999999999999 779999999999999999987654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.9e-34  Score=264.77  Aligned_cols=207  Identities=15%  Similarity=0.133  Sum_probs=174.5

Q ss_pred             CCcchhhHHHhcCCHH----HHHHHHhcCCcccccc----CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCcchhHhh
Q psy8763          31 KKQAVLHLATELNKVP----ILLILLQYKDMIDILQ----GGEHGRTALHIAAIY---DFDECARILVSEQPECDWIMVK   99 (641)
Q Consensus        31 ~~~t~L~~A~~~g~~~----~v~~ll~~g~~~~~~~----~~~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~   99 (641)
                      .|+||||+|++.|+.+    ++++|++.|+  +++.    .+..|.||||+|+..   |+.+++++|+++          
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~--~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~----------   68 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSK--YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI----------   68 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTC--CTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH----------
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCC--CcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc----------
Confidence            4899999999999997    6677788897  5565    789999999999999   999999999998          


Q ss_pred             hcCCCcc-----------cCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhh-----hccccCCCChHHHHHHhC
Q psy8763         100 DFGASLK-----------RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEM-----ISLFDAEGNLPLHSAVHG  163 (641)
Q Consensus       100 ~~g~~~~-----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-----~~~~~~~~~t~L~~A~~~  163 (641)
                        |++++           ..+..|.||||+|+..|+.+++++|+++|++++.....-     ....+..|.||||+|+..
T Consensus        69 --g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  146 (256)
T 2etb_A           69 --DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT  146 (256)
T ss_dssp             --HHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred             --CCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc
Confidence              54444           334789999999999999999999999999985432110     001112399999999999


Q ss_pred             CCHHHHHHHHH---cCCCCCcCCCCCCcHHHHHHH--cCcHH-------HHHHHHhcCCCcccc--ccccCCCCCCcHHH
Q psy8763         164 GDFKAVELCLK---SGAKISTQQFDLSTPVHLACS--QGALD-------IVRLMFNLQPSEKLV--CLNSTDAQKMTPLH  229 (641)
Q Consensus       164 g~~~~v~~Ll~---~g~~~~~~~~~~~t~l~~A~~--~g~~~-------iv~~Ll~~~~~~~~~--~~~~~~~~~~t~L~  229 (641)
                      |+.++|++|++   .|++++.++..|+||||+|+.  .++.+       ++++|++++++....  ..+..+..|.||||
T Consensus       147 ~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH
T ss_pred             CCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH
Confidence            99999999999   999999999999999999999  88888       999999998772000  00778999999999


Q ss_pred             HHHhcCcHHHHHHHHHcCCCCC
Q psy8763         230 CAAMFDRCDVVQYLIDEGADLN  251 (641)
Q Consensus       230 ~A~~~~~~~iv~~Ll~~g~~~~  251 (641)
                      +|+..|+.+++++|+++|++..
T Consensus       227 ~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          227 LAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhCCCCCC
Confidence            9999999999999999987543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=4.9e-34  Score=263.24  Aligned_cols=205  Identities=21%  Similarity=0.253  Sum_probs=177.0

Q ss_pred             CChHHHHHHhcCCHH----HHHHHHHCCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccc-----
Q psy8763         394 GNLPLHSAVHGGDFK----AVELCLKSGAKIST----QQFDLSTPVHLACSQ---GALDIVRLMFNLQPSEKLVC-----  457 (641)
Q Consensus       394 ~~t~l~~a~~~~~~~----~~~~Ll~~g~~~~~----~~~~~~t~l~~a~~~---~~~~~v~~ll~~~~~~~~~~-----  457 (641)
                      |+||||.|+..|+.+    ++++|++.|++++.    .+..|.||||.|+..   |+.+++++|++.+.......     
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            779999999999997    66788889999998    899999999999999   99999999998543321100     


Q ss_pred             -cccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCC-------------CCCHHHHHHhcCCHHHHHHHHH---c
Q psy8763         458 -LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKE-------------KRSPLLLAASRGGWKTVLTLVR---N  520 (641)
Q Consensus       458 -~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~---~  520 (641)
                       ....|..|.||||+|+..++.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++   +
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence             1124477999999999999999999999999999999886             9999999999999999999999   9


Q ss_pred             CCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcc-------cccCCCCCChHHHHHhcCCHHHHH
Q psy8763         521 KANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACI-------NLKNNSNESPLHLAARYGRYNTVK  593 (641)
Q Consensus       521 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~  593 (641)
                      |++++.+|..|.||||+|+..+........   ...+++++|+++|+++       +.+|..|.||||+|+..|+.++|+
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~---~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSA---LVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHH---HHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhH---HHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence            999999999999999999983322111000   0133999999999999       999999999999999999999999


Q ss_pred             HHHhcCCC
Q psy8763         594 KLLSSERG  601 (641)
Q Consensus       594 ~Ll~~g~~  601 (641)
                      +|+++|++
T Consensus       239 ~Ll~~g~~  246 (256)
T 2etb_A          239 HILQREFS  246 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhCCCC
Confidence            99999976

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.4e-33  Score=262.88  Aligned_cols=222  Identities=20%  Similarity=0.217  Sum_probs=177.9

Q ss_pred             HHHhhcCChHHHHHHhcCCHHHHHHHHH----CCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccc-
Q psy8763         388 SLFAAEGNLPLHSAVHGGDFKAVELCLK----SGAKIS----TQQFDLSTPVHLACSQ---GALDIVRLMFNLQPSEKL-  455 (641)
Q Consensus       388 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~----~g~~~~----~~~~~~~t~l~~a~~~---~~~~~v~~ll~~~~~~~~-  455 (641)
                      ...+..|.||||.|+..|+.++++.|++    .+.+++    ..+..|.||||+|+..   |+.+++++|++.+..... 
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            4457789999999999999998888876    666665    4578899999999987   999999999996432110 


Q ss_pred             -----cccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCC--------------CCCCHHHHHHhcCCHHHHHH
Q psy8763         456 -----VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK--------------EKRSPLLLAASRGGWKTVLT  516 (641)
Q Consensus       456 -----~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------------~g~t~L~~A~~~~~~~~v~~  516 (641)
                           ......+..|.||||+|+..++.+++++|+++|++++..+.              .|.||||+|+..|+.+++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  166 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF  166 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                 01223567899999999999999999999999999999987              79999999999999999999


Q ss_pred             HHH---cCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCccc-------ccCCCCCChHHHHHhc
Q psy8763         517 LVR---NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACIN-------LKNNSNESPLHLAARY  586 (641)
Q Consensus       517 Ll~---~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~-------~~~~~g~t~L~~A~~~  586 (641)
                      |++   +|++++.+|..|.||||+|+..+........   .-.+++++|+++|++++       .+|..|.||||+|+..
T Consensus       167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~---~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK---FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHH---HHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHH---HHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            999   9999999999999999999998843221110   02789999999999997       4899999999999999


Q ss_pred             CCHHHHHHHHhcCC-CccccccCCCCCChh
Q psy8763         587 GRYNTVKKLLSSER-GSFIINESDGEGLTP  615 (641)
Q Consensus       587 ~~~~~v~~Ll~~g~-~~~~~~~~d~~g~t~  615 (641)
                      |+.++|++|+++|+ +   .......+.+|
T Consensus       244 g~~~iv~~Ll~~ga~d---p~~~~~~~~~~  270 (273)
T 2pnn_A          244 GKIGVLAYILQREIHE---PECRHAAAHHH  270 (273)
T ss_dssp             TCHHHHHHHHHHHTC---------------
T ss_pred             ChHHHHHHHHHCCCCC---chhhhhhhhhc
Confidence            99999999999999 5   44444444444

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=6.7e-33  Score=256.45  Aligned_cols=207  Identities=21%  Similarity=0.205  Sum_probs=178.0

Q ss_pred             hcCChHHHHHHhcCCHHH----HHHHHHCCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHhcCCCccc-----
Q psy8763         392 AEGNLPLHSAVHGGDFKA----VELCLKSGAKISTQQ----FDLSTPVHLAC---SQGALDIVRLMFNLQPSEKL-----  455 (641)
Q Consensus       392 ~~~~t~l~~a~~~~~~~~----~~~Ll~~g~~~~~~~----~~~~t~l~~a~---~~~~~~~v~~ll~~~~~~~~-----  455 (641)
                      ..++++|+.|++.|+.+.    +++|++.|++++..+    ..|.||||.|+   +.|+.+++++|++.+.....     
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            357889999999999995    555555999998776    66999999999   77999999999986432111     


Q ss_pred             -cccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCC--------------CCCCCHHHHHHhcCCHHHHHHHHH-
Q psy8763         456 -VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD--------------KEKRSPLLLAASRGGWKTVLTLVR-  519 (641)
Q Consensus       456 -~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~Ll~-  519 (641)
                       ..++..+..|.||||+|+..|+.+++++|+++|++++..+              ..|+||||+|+..|+.+++++|++ 
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  162 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN  162 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence             2245556689999999999999999999999999999998              689999999999999999999999 


Q ss_pred             --cCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcc-------cccCCCCCChHHHHHhcCCHH
Q psy8763         520 --NKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACI-------NLKNNSNESPLHLAARYGRYN  590 (641)
Q Consensus       520 --~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~  590 (641)
                        +|++++.+|..|.||||+|+..+........   ...+++++|+++|+++       +.+|..|.||||+|+..|+.+
T Consensus       163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~---~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  239 (260)
T 3jxi_A          163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTK---FVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG  239 (260)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHH---HHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccCCCCcccCCCCCcHHHHHHHhccCchhHHH---HHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence              9999999999999999999987743221110   0368999999999999       779999999999999999999


Q ss_pred             HHHHHHhcCCC
Q psy8763         591 TVKKLLSSERG  601 (641)
Q Consensus       591 ~v~~Ll~~g~~  601 (641)
                      +|++|+++|++
T Consensus       240 ~v~~Ll~~g~~  250 (260)
T 3jxi_A          240 IFQHIIRREIA  250 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhCCC
Confidence            99999999976

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=2.1e-32  Score=253.08  Aligned_cols=222  Identities=15%  Similarity=0.100  Sum_probs=176.1

Q ss_pred             cCCCcchhhHHHhcCCHHH----HHHHHhcCCcccccc--CCCCCchHHHHHH---HcCCHHHHHHHHhcCCCcchhHhh
Q psy8763          29 NNKKQAVLHLATELNKVPI----LLILLQYKDMIDILQ--GGEHGRTALHIAA---IYDFDECARILVSEQPECDWIMVK   99 (641)
Q Consensus        29 ~~~~~t~L~~A~~~g~~~~----v~~ll~~g~~~~~~~--~~~~g~t~L~~A~---~~g~~~iv~~Ll~~~~~~~~~~~~   99 (641)
                      +..++|+||.|++.|+.+.    +++|++.|+.++...  .+..|.||||+|+   ..|+.+++++|++.++...... .
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~-~   80 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR-E   80 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH-H
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH-h
Confidence            5678999999999999995    555555888554322  2377999999999   7799999999999843211100 0


Q ss_pred             hcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhh-h-----hccccCCCChHHHHHHhCCCHHHHHHHH
Q psy8763         100 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREE-M-----ISLFDAEGNLPLHSAVHGGDFKAVELCL  173 (641)
Q Consensus       100 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~-----~~~~~~~~~t~L~~A~~~g~~~~v~~Ll  173 (641)
                      -...+.+..+..|.||||+|+..|+.+++++|+++|++++..... +     ....+..|.||||+|+..|+.++|++|+
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            012445556679999999999999999999999999998543210 0     0011157999999999999999999999


Q ss_pred             H---cCCCCCcCCCCCCcHHHHHHHcCc---------HHHHHHHHhcCCCccc--cccccCCCCCCcHHHHHHhcCcHHH
Q psy8763         174 K---SGAKISTQQFDLSTPVHLACSQGA---------LDIVRLMFNLQPSEKL--VCLNSTDAQKMTPLHCAAMFDRCDV  239 (641)
Q Consensus       174 ~---~g~~~~~~~~~~~t~l~~A~~~g~---------~~iv~~Ll~~~~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~i  239 (641)
                      +   .|++++.++..|+||||+|+..++         .+++++|++++++...  ...+..+..|.||||+|+..|+.++
T Consensus       161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  240 (260)
T 3jxi_A          161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI  240 (260)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence            9   999999999999999999999888         7999999999876210  0015689999999999999999999


Q ss_pred             HHHHHHcCCCCC
Q psy8763         240 VQYLIDEGADLN  251 (641)
Q Consensus       240 v~~Ll~~g~~~~  251 (641)
                      +++|+++|++..
T Consensus       241 v~~Ll~~g~~~~  252 (260)
T 3jxi_A          241 FQHIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcc
Confidence            999999997654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=3e-33  Score=250.77  Aligned_cols=208  Identities=17%  Similarity=0.131  Sum_probs=177.8

Q ss_pred             HHHHHHCCCCCCCCCC---CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHH
Q psy8763         410 VELCLKSGAKISTQQF---DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID  486 (641)
Q Consensus       410 ~~~Ll~~g~~~~~~~~---~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~  486 (641)
                      ++.|++.|++++..+.   .+.||||.|+..|+.+++++|++.+.     +++..+..|.||||+|+..++.+++++|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-----DPSQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSS-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCC-----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4678888988876554   45678999999999999999999544     478899999999999999999999999999


Q ss_pred             cCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccc-cCCCchhHHH--hhcCCCchhhHHHHHHHHHHHHHHh
Q psy8763         487 EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLL--VLNGGGHIKEFAEEVAAVFLGENLI  563 (641)
Q Consensus       487 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~~~~~~~~~~~~~Ll  563 (641)
                      +|++++..+..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|  +..+            +.+++++|+
T Consensus        76 ~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~------------~~~~v~~Ll  143 (229)
T 2vge_A           76 AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG------------YADCATYLA  143 (229)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTT------------HHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcC------------hHHHHHHHH
Confidence            999999999999999999999999999999999999999986 6999999999  8888            999999999


Q ss_pred             hcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeee-ceeeeecc
Q psy8763         564 NLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSI-FQVTYVWC  638 (641)
Q Consensus       564 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~-l~~~~~~~  638 (641)
                      ++|++++.+|..|.||++.++..+.   +++|++.|++ ..++.+|..|+|||++|+..|+.++|+. +++.+|..
T Consensus       144 ~~ga~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~-~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~  215 (229)
T 2vge_A          144 DVEQSMGLMNSGAVYALWDYSAEFG---DELSFREGES-VTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRV  215 (229)
T ss_dssp             HHHHHTTTSGGGEEEESSCBCCSST---TBCCBCTTCE-EEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCC
T ss_pred             HcCCCcccccCCchHHHHHHhhccc---cccCcccccc-ccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCC
Confidence            9999999999999999997665543   3688999987 2357789999999999999999999986 56667765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=5.9e-32  Score=250.74  Aligned_cols=194  Identities=20%  Similarity=0.190  Sum_probs=181.3

Q ss_pred             cCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCC-Cccc
Q psy8763          29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGA-SLKR  107 (641)
Q Consensus        29 ~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~-~~~~  107 (641)
                      +..+++++|.|+..|+++.++.+++.+.+..++..|..|.||||+|+..|+.++|++|++.            |+ +++.
T Consensus        73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~------------g~~~~~~  140 (276)
T 4hbd_A           73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDS------------GVCKVDK  140 (276)
T ss_dssp             HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------------SCCCTTC
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHC------------CCCcCCC
Confidence            4456789999999999999999999887666889999999999999999999999999999            77 9999


Q ss_pred             CCCCCCcHHHHHH-----HhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcC
Q psy8763         108 ACSNGYYPIHDAA-----KNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ  182 (641)
Q Consensus       108 ~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  182 (641)
                      .+..|.||||.|+     ..++.+++++|++.|...        +..+..|.||||+|+..|+.++|++|++.|++++.+
T Consensus       141 ~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~  212 (276)
T 4hbd_A          141 QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN--------AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ  212 (276)
T ss_dssp             CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT--------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc--------cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence            9999999999999     779999999999999776        456788999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHh-cCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q psy8763         183 QFDLSTPVHLACSQGALDIVRLMFN-LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG  247 (641)
Q Consensus       183 ~~~~~t~l~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g  247 (641)
                      +..|.||||+|+..|+.+++++|++ .+++     ++..+..|.|||++|+..|+.+++++|++++
T Consensus       213 d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-----~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          213 DDDGSTALMCACEHGHKEIAGLLLAVPSCD-----ISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-----TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-----CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999999999999 7777     6889999999999999999999999999975

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=5.5e-32  Score=237.27  Aligned_cols=162  Identities=28%  Similarity=0.320  Sum_probs=146.5

Q ss_pred             cccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHH
Q psy8763         458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHL  537 (641)
Q Consensus       458 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  537 (641)
                      ++.+|..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..++.+++++|+++|++++.++..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            46778889999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             HhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHH
Q psy8763         538 LVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLH  617 (641)
Q Consensus       538 a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~  617 (641)
                      |+..+            +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.|||+
T Consensus       108 A~~~~------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~  172 (192)
T 2rfm_A          108 SIIFG------------YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEA  172 (192)
T ss_dssp             HHHHT------------CHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHH
T ss_pred             HHHcC------------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHH
Confidence            99988            88899999999999999999999999999999999999999999988   8888999999999


Q ss_pred             HHHhhCCcceeeeceee
Q psy8763         618 IASKEGFHYSVSIFQVT  634 (641)
Q Consensus       618 ~A~~~~~~~~~~~l~~~  634 (641)
                      +|+..|+.+++++|++.
T Consensus       173 ~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          173 SARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHhc
Confidence            99999999999888764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.1e-31  Score=233.63  Aligned_cols=164  Identities=21%  Similarity=0.180  Sum_probs=130.1

Q ss_pred             ccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCC
Q psy8763          24 NTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGA  103 (641)
Q Consensus        24 ~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~  103 (641)
                      .+|.+|..|+||||+|+..|+.+++++|+++|+  +++..+..|.||||+|+..|+.+++++|+++            |+
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~   92 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFD--KLEDKDIEGSTALIWAVKNNRLGIAEKLLSK------------GS   92 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------------TC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcc--ccccccccCccHHHHHHHcCCHHHHHHHHHC------------CC
Confidence            356678888888888888888888888888776  5556677788888888888888888888887            77


Q ss_pred             CcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCC
Q psy8763         104 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ  183 (641)
Q Consensus       104 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  183 (641)
                      +++..+..|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|+++|++++.++
T Consensus        93 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  164 (192)
T 2rfm_A           93 NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV--------NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD  164 (192)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC--------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            77778888888888888888888888888888776        4557778888888888888888888888888888888


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcC
Q psy8763         184 FDLSTPVHLACSQGALDIVRLMFNLQ  209 (641)
Q Consensus       184 ~~~~t~l~~A~~~g~~~iv~~Ll~~~  209 (641)
                      ..|.||+++|+..|+.+++++|++++
T Consensus       165 ~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          165 LTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            88888888888888888888887653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.3e-31  Score=228.88  Aligned_cols=170  Identities=26%  Similarity=0.310  Sum_probs=152.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHH
Q psy8763         427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA  506 (641)
Q Consensus       427 ~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  506 (641)
                      +.+|||.|+..|+.+++++|++.++.    .++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN----LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS   77 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG----GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc----cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHH
Confidence            35789999999999999999986543    37788999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhc
Q psy8763         507 SRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY  586 (641)
Q Consensus       507 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  586 (641)
                      ..++.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|..|.||||+|+..
T Consensus        78 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  145 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN------------HVKCVEALLARGADLTTEADSGYTPMDLAVAL  145 (172)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC------------CHHHHHHHHHcCCCccccCCCCCCHHHHHHHh
Confidence            999999999999999999999999999999999999            99999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCccccccCCCCCChh
Q psy8763         587 GRYNTVKKLLSSERGSFIINESDGEGLTP  615 (641)
Q Consensus       587 ~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~  615 (641)
                      |+.+++++|+++|++   +...+..|.||
T Consensus       146 ~~~~~~~~L~~~~~~---~~~~~~~~~~p  171 (172)
T 3v30_A          146 GYRKVQQVIENHILK---LFQSNLVPADP  171 (172)
T ss_dssp             TCHHHHHHHHHHHHH---HSCC-------
T ss_pred             CcHHHHHHHHHHHHH---HhcccCCCCCC
Confidence            999999999999998   77788888887

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3.3e-32  Score=252.46  Aligned_cols=187  Identities=24%  Similarity=0.256  Sum_probs=122.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCC-CCCcCCCCCCCHHHHHH--
Q psy8763         430 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA-DLNVLDKEKRSPLLLAA--  506 (641)
Q Consensus       430 ~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~--  506 (641)
                      ++|.|+..++.+.++.+++...   ...+|..|..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+  
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~~~---~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSARLL---DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHHHH---HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH---hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            4455555556666655554211   11255666666677777777777777777776665 66666666677777666  


Q ss_pred             ---hcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHH
Q psy8763         507 ---SRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLA  583 (641)
Q Consensus       507 ---~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  583 (641)
                         ..++.+++++|++.|.+++..+..|.||||+|+..+            +.+++++|+++|++++.+|..|.||||+|
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g------------~~~~v~~Ll~~gad~n~~d~~G~TpLh~A  223 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHG------------RVDVVKALLACEADVNVQDDDGSTALMCA  223 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC------------CHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence               445666666777666666666666677777777666            66667777777777776666777777777


Q ss_pred             HhcCCHHHHHHHHh-cCCCccccccCCCCCChhHHHHHhhCCcceeeeceee
Q psy8763         584 ARYGRYNTVKKLLS-SERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVT  634 (641)
Q Consensus       584 ~~~~~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~  634 (641)
                      +..|+.++|++|++ .|++   ++..|..|+|||++|+..|+.+++++|+++
T Consensus       224 ~~~g~~~iv~~Ll~~~gad---~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          224 CEHGHKEIAGLLLAVPSCD---ISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHTCHHHHHHHHTSTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCCCC---CcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            77777777777776 6666   666666777777777777777776666654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=8.8e-31  Score=225.19  Aligned_cols=170  Identities=23%  Similarity=0.245  Sum_probs=139.2

Q ss_pred             CcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCC
Q psy8763          32 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSN  111 (641)
Q Consensus        32 ~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~  111 (641)
                      +.||||+|+..|+.+++++|++.|.. .++..+..|.||||+|+..|+.+++++|+++            |++++..+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~~~~~~~~~   68 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN-LVNKPDERGFTPLIWASAFGEIETVRFLLEW------------GADPHILAKE   68 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG-GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH------------TCCTTCCCTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc-cccCCCCCCCCHHHHHHHcCCHHHHHHHHHc------------CCCchhhccc
Confidence            46899999999999999999998863 3677788899999999999999999999988            8888888888


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHH
Q psy8763         112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  191 (641)
Q Consensus       112 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~  191 (641)
                      |.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||+
T Consensus        69 g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  140 (172)
T 3v30_A           69 RESALSLASTGGYTDIVGLLLERDVDI--------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD  140 (172)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCC--------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            999999999999999999999888886        456788889999999999999999999999988888888888888


Q ss_pred             HHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcH
Q psy8763         192 LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP  227 (641)
Q Consensus       192 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~  227 (641)
                      +|+..|+.+++++|++++++     +...+..+.||
T Consensus       141 ~A~~~~~~~~~~~L~~~~~~-----~~~~~~~~~~p  171 (172)
T 3v30_A          141 LAVALGYRKVQQVIENHILK-----LFQSNLVPADP  171 (172)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH-----HSCC-------
T ss_pred             HHHHhCcHHHHHHHHHHHHH-----HhcccCCCCCC
Confidence            88888888888888888776     34555555554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=3.9e-31  Score=226.16  Aligned_cols=157  Identities=27%  Similarity=0.278  Sum_probs=81.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHH
Q psy8763         427 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA  506 (641)
Q Consensus       427 ~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  506 (641)
                      |.||||.|+..|+.+++++|++.+     .+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQE-----NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHS-----SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcC-----CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            445555555555555555555432     224444555555555555555555555555555555555555555555555


Q ss_pred             hcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhc
Q psy8763         507 SRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY  586 (641)
Q Consensus       507 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  586 (641)
                      ..++.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|..|.|||++|+..
T Consensus        78 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  145 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN------------HVKCVKMLLESGADPTIETDSGYNSMDLAVAL  145 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcC------------CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            555555555555555555555555555555555555            45555555555555555555555555555555


Q ss_pred             CCHHHHHHHHhcCC
Q psy8763         587 GRYNTVKKLLSSER  600 (641)
Q Consensus       587 ~~~~~v~~Ll~~g~  600 (641)
                      |+.+++++|+++++
T Consensus       146 ~~~~~~~~L~~~~~  159 (167)
T 3v31_A          146 GYRSVQQVIESHLL  159 (167)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHH
Confidence            55555555555443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=2.4e-30  Score=221.30  Aligned_cols=160  Identities=26%  Similarity=0.332  Sum_probs=127.6

Q ss_pred             ccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCccc
Q psy8763          28 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR  107 (641)
Q Consensus        28 ~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~  107 (641)
                      ....+.|+|++|++.|+.+++++|+++|+  +++..+..|.||||+|+..|+.+++++|+++            |++++.
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~~~~~   75 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGA--DVNAEDASGWTPLHLAAFNGHLEIVEVLLKN------------GADVNA   75 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------------TCCTTC
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------------CCCCCc
Confidence            34556788888888888888888888886  5566777888888888888888888888887            778888


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCC
Q psy8763         108 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS  187 (641)
Q Consensus       108 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  187 (641)
                      .+..|.||||.|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        76 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  147 (169)
T 2y1l_E           76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADV--------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK  147 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            8888888888888888888888888888776        45577788888888888888888888888888888888888


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcC
Q psy8763         188 TPVHLACSQGALDIVRLMFNLQ  209 (641)
Q Consensus       188 t~l~~A~~~g~~~iv~~Ll~~~  209 (641)
                      |||++|+..|+.+++++|+++|
T Consensus       148 t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          148 TAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHhCCHHHHHHHHHcC
Confidence            8888888888888888887653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=3.1e-30  Score=220.56  Aligned_cols=160  Identities=20%  Similarity=0.224  Sum_probs=144.6

Q ss_pred             CCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCC
Q psy8763          30 NKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRAC  109 (641)
Q Consensus        30 ~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~  109 (641)
                      ..|.||||+|+..|+.+++++|++.|+  +++..+..|.||||+|+..|+.+++++|+++            |++++..+
T Consensus         1 G~~~t~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~~~~~~~   66 (167)
T 3v31_A            1 GANSLSVHQLAAQGEMLYLATRIEQEN--VINHTDEEGFTPLMWAAAHGQIAVVEFLLQN------------GADPQLLG   66 (167)
T ss_dssp             CTTCCCHHHHHHTTCHHHHHHHHHHSS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------------TCCTTCCC
T ss_pred             CCCcchHHHHHHCCCHHHHHHHHHcCC--CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc------------CCCCCCcC
Confidence            358899999999999999999999986  5677888999999999999999999999998            88899899


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcH
Q psy8763         110 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP  189 (641)
Q Consensus       110 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~  189 (641)
                      ..|.||||.|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus        67 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  138 (167)
T 3v31_A           67 KGRESALSLACSKGYTDIVKMLLDCGVDV--------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS  138 (167)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCC--------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            99999999999999999999999999887        4568889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCC
Q psy8763         190 VHLACSQGALDIVRLMFNLQPS  211 (641)
Q Consensus       190 l~~A~~~g~~~iv~~Ll~~~~~  211 (641)
                      |++|+..|+.+++++|++++..
T Consensus       139 l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          139 MDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHH
Confidence            9999999999999999987654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=4.8e-31  Score=225.67  Aligned_cols=156  Identities=32%  Similarity=0.367  Sum_probs=108.0

Q ss_pred             CCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcC
Q psy8763         463 AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG  542 (641)
Q Consensus       463 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  542 (641)
                      ..+.++|+.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            34456677777777777777777777777666666777777777777777777777777777666666777777777666


Q ss_pred             CCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhh
Q psy8763         543 GGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE  622 (641)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~  622 (641)
                                  +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.|||++|+..
T Consensus        92 ------------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~  156 (169)
T 2y1l_E           92 ------------HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDN  156 (169)
T ss_dssp             ------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHT
T ss_pred             ------------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHh
Confidence                        66677777777777776676777777777777777777777777766   666666777777777777


Q ss_pred             CCcceeeecee
Q psy8763         623 GFHYSVSIFQV  633 (641)
Q Consensus       623 ~~~~~~~~l~~  633 (641)
                      |+.+++++|++
T Consensus       157 ~~~~~~~~L~~  167 (169)
T 2y1l_E          157 GNEDLAEILQK  167 (169)
T ss_dssp             TCHHHHHHHHT
T ss_pred             CCHHHHHHHHH
Confidence            77777666654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=4e-30  Score=218.85  Aligned_cols=156  Identities=30%  Similarity=0.376  Sum_probs=87.5

Q ss_pred             CcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCC
Q psy8763          32 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSN  111 (641)
Q Consensus        32 ~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~  111 (641)
                      ..||||+|++.|+.+++++|+++|+  +++..+..|.||||+|+. |+.+++++|+++            |++++..+..
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~------------g~~~~~~~~~   69 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNV--NVNAQNGFGRTALQVMKL-GNPEIARRLLLR------------GANPDLKDRT   69 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCC--CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT------------TCCTTCCCTT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCC--CccccCccCccHHHHHHc-CcHHHHHHHHHc------------CCCCCCCCCC
Confidence            4456666666666666666665554  344455556666666555 666666666655            5555555555


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCC-CCcCCCCCCcHH
Q psy8763         112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK-ISTQQFDLSTPV  190 (641)
Q Consensus       112 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~t~l  190 (641)
                      |.||||.|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.|||
T Consensus        70 g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l  141 (162)
T 1ihb_A           70 GFAVIHDAARAGFLDTLQTLLEFQADV--------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  141 (162)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC--------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHH
Confidence            555555555555555555555555554        23445555555555555555555555555554 355555555555


Q ss_pred             HHHHHcCcHHHHHHHHhcCC
Q psy8763         191 HLACSQGALDIVRLMFNLQP  210 (641)
Q Consensus       191 ~~A~~~g~~~iv~~Ll~~~~  210 (641)
                      ++|+..|+.+++++|+++|+
T Consensus       142 ~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          142 DLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHcCCHHHHHHHHHhCC
Confidence            55555555555555555443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=5.5e-30  Score=218.01  Aligned_cols=159  Identities=19%  Similarity=0.236  Sum_probs=149.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhh
Q psy8763          66 HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEM  145 (641)
Q Consensus        66 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  145 (641)
                      ...||||.|+..|+.+++++|+++            |++++..+..|.||||.|+. |+.+++++|+++|+++       
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~------------~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-------   63 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN------------NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-------   63 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS------------CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC------------CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-------
Confidence            467999999999999999999998            89999999999999999999 9999999999999987       


Q ss_pred             hccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCC
Q psy8763         146 ISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKM  225 (641)
Q Consensus       146 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~  225 (641)
                       +..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++..    ++..+..|.
T Consensus        64 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~~~~~~~g~  138 (162)
T 1ihb_A           64 -DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN----VGHRNHKGD  138 (162)
T ss_dssp             -TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC----TTCCCTTSC
T ss_pred             -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC----CCCcCCCCC
Confidence             456889999999999999999999999999999999999999999999999999999999999875    578899999


Q ss_pred             cHHHHHHhcCcHHHHHHHHHcCCC
Q psy8763         226 TPLHCAAMFDRCDVVQYLIDEGAD  249 (641)
Q Consensus       226 t~L~~A~~~~~~~iv~~Ll~~g~~  249 (641)
                      |||++|+..|+.+++++|+++|++
T Consensus       139 t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          139 TACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             cHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999985

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2e-30  Score=217.83  Aligned_cols=150  Identities=25%  Similarity=0.239  Sum_probs=118.7

Q ss_pred             CcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCc
Q psy8763         466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH  545 (641)
Q Consensus       466 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  545 (641)
                      .++|+.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+   
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---   78 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG---   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT---
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC---
Confidence            467788888888888888888777766 4677778888888888888888888888888777777888888888777   


Q ss_pred             hhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCc
Q psy8763         546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH  625 (641)
Q Consensus       546 ~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~  625 (641)
                               +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.|||++|+..|+.
T Consensus        79 ---------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B           79 ---------HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             ---------CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             ---------hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCH
Confidence                     77788888888888888888888888888888888888888888877   777777888888888888887


Q ss_pred             ceeeec
Q psy8763         626 YSVSIF  631 (641)
Q Consensus       626 ~~~~~l  631 (641)
                      +++++|
T Consensus       147 ~i~~~L  152 (153)
T 1awc_B          147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777766

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-29  Score=212.40  Aligned_cols=151  Identities=24%  Similarity=0.270  Sum_probs=138.9

Q ss_pred             CcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCC
Q psy8763          32 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSN  111 (641)
Q Consensus        32 ~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~  111 (641)
                      ..|+|+.|++.|+.+++++|+++|++++   .+..|.||||+|+..|+.+++++|+++            |++++..+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~~~~~~~~~   66 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRA------------GVSRDARTKV   66 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTT------------TCCTTCCCTT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHc------------CCCCCCCCCC
Confidence            4689999999999999999999998543   477899999999999999999999998            8899999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHH
Q psy8763         112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  191 (641)
Q Consensus       112 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~  191 (641)
                      |.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||+
T Consensus        67 g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  138 (153)
T 1awc_B           67 DRTPLHMAASEGHANIVEVLLKHGADV--------NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHcChHHHHHHHHHcCCCC--------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            999999999999999999999999987        456888999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHH
Q psy8763         192 LACSQGALDIVRLM  205 (641)
Q Consensus       192 ~A~~~g~~~iv~~L  205 (641)
                      +|+..|+.+++++|
T Consensus       139 ~A~~~~~~~i~~~L  152 (153)
T 1awc_B          139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999887

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=9.1e-30  Score=220.18  Aligned_cols=166  Identities=28%  Similarity=0.337  Sum_probs=145.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHH
Q psy8763         426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA  505 (641)
Q Consensus       426 ~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  505 (641)
                      ++.++|+.|+..|+.+++++|++..+    .+++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTE----NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLA   79 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTT----SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCc----ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            46688999999999999999998543    34778888999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHh
Q psy8763         506 ASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAAR  585 (641)
Q Consensus       506 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  585 (641)
                      +..++.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|..|.|||++|+.
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~------------~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~  147 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG------------QDQVAEDLVANGALVSICNKYGEMPVDKAKA  147 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHTTCCSSBCCTTSCCGGGGSCH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC------------CHHHHHHHHHCCCCcchhccCCCCcHHHHHH
Confidence            9999999999999999999999999999999999998            8899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCccccccCCC
Q psy8763         586 YGRYNTVKKLLSSERGSFIINESDG  610 (641)
Q Consensus       586 ~~~~~~v~~Ll~~g~~~~~~~~~d~  610 (641)
                      .++.+++++|++.|++   ++..+.
T Consensus       148 ~~~~~~~~~L~~~g~~---~~~~~~  169 (179)
T 3f6q_A          148 PLRELLRERAEKMGQN---LNRIPY  169 (179)
T ss_dssp             HHHHHHHHHHHHTTCC---CSCBCC
T ss_pred             HHHHHHHHHHHHhhcC---cccCCc
Confidence            9999999999999998   554443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=8e-30  Score=217.50  Aligned_cols=160  Identities=27%  Similarity=0.366  Sum_probs=139.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHH
Q psy8763         424 QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLL  503 (641)
Q Consensus       424 ~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  503 (641)
                      +..+.++|+.|+..|+.+++++|++..+    ..++..+..|.||||+|+..++.+++++|+++|++++..+..|+||||
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   80 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH   80 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTT----TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCC----CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence            4566788999999999999999987543    346677788889999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHH
Q psy8763         504 LAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLA  583 (641)
Q Consensus       504 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  583 (641)
                      +|+..++.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|..|.||||+|
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a  148 (165)
T 3twr_A           81 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG------------KYEICKLLLQHGADPTKKNRDGNTPLDLV  148 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTTSCCTGGGS
T ss_pred             HHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC------------CHHHHHHHHHcCCCCcccCCCCCChhHhH
Confidence            999999999999999999999999999999999999998            88999999999999999999999999997


Q ss_pred             HhcCCHHHHHHHHhcCC
Q psy8763         584 ARYGRYNTVKKLLSSER  600 (641)
Q Consensus       584 ~~~~~~~~v~~Ll~~g~  600 (641)
                      +. ++.+++++|+++||
T Consensus       149 ~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          149 KD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CT-TCHHHHHHHHTC--
T ss_pred             hc-CChHHHHHHhhccc
Confidence            76 88899999998886

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.3e-32  Score=245.01  Aligned_cols=202  Identities=19%  Similarity=0.143  Sum_probs=173.6

Q ss_pred             HHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy8763         370 EVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL  449 (641)
Q Consensus       370 ~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~  449 (641)
                      +.|++.|++++...     ..+..+.|+|+.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++.
T Consensus         2 ~~ll~~~~~~~~~~-----~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   76 (229)
T 2vge_A            2 RSVLRKAGSPRKAR-----RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA   76 (229)
T ss_dssp             --------CCCCCC-----CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             eehhccCCCCcccc-----ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            45666666654332     2245677899999999999999999999999999999999999999999999999999995


Q ss_pred             CCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCC-CCCCCHHHHH--HhcCCHHHHHHHHHcCCCccc
Q psy8763         450 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLA--ASRGGWKTVLTLVRNKANILL  526 (641)
Q Consensus       450 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A--~~~~~~~~v~~Ll~~g~~~~~  526 (641)
                      +     .+++..|..|.||||+|+..++.+++++|+++|++++..+ ..|+||||+|  +..++.+++++|+++|++++.
T Consensus        77 g-----a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~  151 (229)
T 2vge_A           77 G-----ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL  151 (229)
T ss_dssp             T-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTT
T ss_pred             C-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccc
Confidence            4     4588999999999999999999999999999999999986 6999999999  999999999999999999999


Q ss_pred             cccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCc--ccccCCCCCChHHHHHhcCCHHHHHHHH
Q psy8763         527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC--INLKNNSNESPLHLAARYGRYNTVKKLL  596 (641)
Q Consensus       527 ~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  596 (641)
                      +|..|.|+++.++...               ..++|++.|++  ++.+|..|+||||+|+.+|+.++|+.++
T Consensus       152 ~~~~~~~~l~~~~~~~---------------~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          152 MNSGAVYALWDYSAEF---------------GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             SGGGEEEESSCBCCSS---------------TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             ccCCchHHHHHHhhcc---------------ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            9999999998765554               22678899988  7788999999999999999999998644

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=7.3e-30  Score=217.74  Aligned_cols=161  Identities=24%  Similarity=0.308  Sum_probs=121.6

Q ss_pred             ccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCccc
Q psy8763          28 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR  107 (641)
Q Consensus        28 ~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~  107 (641)
                      .|..|.||||.|++.|+.+++++|++.+. .+++..+..|.||||+|+..|+.+++++|+++            |++++.
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~~~~~   70 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH------------GADVHA   70 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT------------TCCTTC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhc------------CCCCCc
Confidence            35667788888888888888888887554 45666677777888888888888888888887            777777


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCC
Q psy8763         108 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS  187 (641)
Q Consensus       108 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  187 (641)
                      .+..|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        71 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  142 (165)
T 3twr_A           71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVV--------NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN  142 (165)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC--------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence            7778888888888888888888888877776        44567777888888888888888888888888877777777


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCC
Q psy8763         188 TPVHLACSQGALDIVRLMFNLQP  210 (641)
Q Consensus       188 t~l~~A~~~g~~~iv~~Ll~~~~  210 (641)
                      |||++|+. |+.+++++|++.++
T Consensus       143 t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          143 TPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CTGGGSCT-TCHHHHHHHHTC--
T ss_pred             ChhHhHhc-CChHHHHHHhhccc
Confidence            88877665 77777777776553

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=2.3e-32  Score=261.28  Aligned_cols=297  Identities=10%  Similarity=0.016  Sum_probs=195.9

Q ss_pred             CCcchhhHHHh-cCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCC
Q psy8763          31 KKQAVLHLATE-LNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRAC  109 (641)
Q Consensus        31 ~~~t~L~~A~~-~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~  109 (641)
                      .+.+++++|.. .++.+++++++++|.         ++.||||.|++.|+.++|++|+++++..         ...+..+
T Consensus        64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~---------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~---------~~~~~~~  125 (376)
T 2aja_A           64 RQLLCLYYAHYNRNAKQLWSDAHKKGI---------KSEVICFVAAITGCSSALDTLCLLLTSD---------EIVKVIQ  125 (376)
T ss_dssp             HHHHHHHHHHTTTTCTTHHHHHHHHTC---------CHHHHHHHHHHHCCHHHHHHHTTC--CC---------SSCC--C
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCC---------CcCCHHHHHHHcCCHHHHHHHHHcCCcH---------HHHHHhc
Confidence            35678888877 588999999999875         2459999999999999999999983210         0112334


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCc--CCCCCC
Q psy8763         110 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKIST--QQFDLS  187 (641)
Q Consensus       110 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~~~  187 (641)
                      ..|.||||+|+..|+.++|++|+++|+++..     .+..+.+ .||||+|+..|+.++|++|+++|++++.  .+..|.
T Consensus       126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~-----~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~  199 (376)
T 2aja_A          126 AENYQAFRLAAENGHLHVLNRLCELAPTEIM-----AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY  199 (376)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-----HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-----cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCC
Confidence            5677999999999999999999999975310     0112222 8999999999999999999999999887  888899


Q ss_pred             cHHHHHH-HcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Q psy8763         188 TPVHLAC-SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS  266 (641)
Q Consensus       188 t~l~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~  266 (641)
                      ||||+|+ ..|+.++|++|+++++            .+.|||+.|+..|+.+++++|+++|++++..+.    +++.|+.
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll~~ga------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~----~l~~A~~  263 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLLDCPV------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSNP  263 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHH------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT----TTTTTSS
T ss_pred             CHHHHHHHHCCCHHHHHHHHhCCC------------ccchHHHHHHHCCCHHHHHHHHhcCcccccccH----HHHHHHH
Confidence            9999999 9999999999998542            278999999999999999999999988765432    4444555


Q ss_pred             cCCcccccccccccccCchhHHHHHHh---cCChhHHHHHhhCCCccc---ccCCCCCcchHHHHHHHhCcHHHHHHHHH
Q psy8763         267 RGGWKTNGVNTRILNNKKQAVLHLATE---LNKVPILLILLQYKDMID---ILQGGEHGRTALHIAAIYDFDECARILVK  340 (641)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~l~~a~~---~~~~~~~~~ll~~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  340 (641)
                      .++.+......   .......+.....   .+..+.+++|++.+....   .......+.++|++|+..|+.+++++|+ 
T Consensus       264 ~g~~~vv~~~~---~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl-  339 (376)
T 2aja_A          264 DGVFDLVTKSE---CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL-  339 (376)
T ss_dssp             SSCCCCSSHHH---HHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHT-
T ss_pred             CCChhhhcHHh---hhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHH-
Confidence            55443211000   0000001111112   223456677776432100   0111234568899999999999999998 


Q ss_pred             hcCccccccccCCCChHHHHHHcCChHHHHHHHh
Q psy8763         341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ  374 (641)
Q Consensus       341 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~  374 (641)
                      ..+   ...+..+.+++.+|-..|..++.+.-+.
T Consensus       340 ~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          340 SIP---SVLALTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             TSH---HHHHSCC---------------------
T ss_pred             cCh---HHHHHHHHhccccccccccccHHHHHHH
Confidence            332   4555678888888888888777665443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=2.6e-29  Score=217.34  Aligned_cols=160  Identities=21%  Similarity=0.221  Sum_probs=101.3

Q ss_pred             CCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCC
Q psy8763          31 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS  110 (641)
Q Consensus        31 ~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~  110 (641)
                      .+.++||.|++.|+.+++++|++.+. .+++..+..|.||||+|+..|+.+++++|+++            |++++..+.
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~~~~~~~~   70 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLIMR------------GARINVMNR   70 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTT-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------------TCCTTCCCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCc-ccccccCCCCCCHHHHHHHcCcHHHHHHHHHc------------CCCCCCcCC
Confidence            45666666666666666666666643 24555666666666666666666666666666            666666666


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHH
Q psy8763         111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPV  190 (641)
Q Consensus       111 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l  190 (641)
                      .|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus        71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  142 (179)
T 3f6q_A           71 GDDTPLHLAASHGHRDIVQKLLQYKADI--------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV  142 (179)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC--------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcH
Confidence            6666666666666666666666666665        34455666666666666666666666666666666666666666


Q ss_pred             HHHHHcCcHHHHHHHHhcCCC
Q psy8763         191 HLACSQGALDIVRLMFNLQPS  211 (641)
Q Consensus       191 ~~A~~~g~~~iv~~Ll~~~~~  211 (641)
                      ++|+..++.+++++|++++++
T Consensus       143 ~~A~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A          143 DKAKAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             GGSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhhcC
Confidence            666666666666666666555

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=6.8e-30  Score=215.76  Aligned_cols=150  Identities=24%  Similarity=0.294  Sum_probs=72.7

Q ss_pred             cHHHHHHhcCChhHHHHHHHc-CCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCc
Q psy8763         467 TPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH  545 (641)
Q Consensus       467 t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  545 (641)
                      ||||.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..+   
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---   79 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG---   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT---
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC---
Confidence            444444444444444444444 22444444444444444 4444444444444444444444444444444444444   


Q ss_pred             hhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCc
Q psy8763         546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH  625 (641)
Q Consensus       546 ~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~  625 (641)
                               +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. ++   ++..|..|.|||++|+..|+.
T Consensus        80 ---------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~  146 (156)
T 1bd8_A           80 ---------FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             ---------CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCH
T ss_pred             ---------cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcH
Confidence                     44444444444444444444445555555554555555555444 43   444444455555555555554


Q ss_pred             ceeeecee
Q psy8763         626 YSVSIFQV  633 (641)
Q Consensus       626 ~~~~~l~~  633 (641)
                      +++++|++
T Consensus       147 ~~v~~Ll~  154 (156)
T 1bd8_A          147 DLVDILQG  154 (156)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            44444443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=5.2e-29  Score=210.30  Aligned_cols=154  Identities=26%  Similarity=0.369  Sum_probs=125.7

Q ss_pred             CcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCC
Q psy8763          32 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSN  111 (641)
Q Consensus        32 ~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~  111 (641)
                      +.||||+|++.|+.+++++|++. ...+++..+..|.||||+ +..|+.+++++|+++            |++++..+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~------------g~~~~~~~~~   67 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ------------GASPNVQDTS   67 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT------------TCCTTCCCTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC------------CCCCCCcCCC
Confidence            56788888888888888888887 435667777888888888 888888888888887            8888888888


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHH
Q psy8763         112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  191 (641)
Q Consensus       112 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~  191 (641)
                      |.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|++. ++++.++..|.|||+
T Consensus        68 g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           68 GTSPVHDAARTGFLDTLKVLVEHGADV--------NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE  138 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCS--------CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCC--------CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence            888888888888888888888888776        45577788888888888888888888888 888888888888888


Q ss_pred             HHHHcCcHHHHHHHHhc
Q psy8763         192 LACSQGALDIVRLMFNL  208 (641)
Q Consensus       192 ~A~~~g~~~iv~~Ll~~  208 (641)
                      +|+..|+.+++++|+++
T Consensus       139 ~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCcHHHHHHHHhh
Confidence            88888888888888764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=1.1e-31  Score=256.51  Aligned_cols=249  Identities=15%  Similarity=0.077  Sum_probs=118.0

Q ss_pred             ChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCC---CCCCCCCCcHH
Q psy8763         355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKI---STQQFDLSTPV  431 (641)
Q Consensus       355 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~---~~~~~~~~t~l  431 (641)
                      ||||.|+..|+.+++++|++.|+....     ....+..+.||||+|+..|+.+++++|+++|+++   +..+.+ .|||
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~-----~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEI-----VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSS-----CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHH-----HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            455555555555555555554441100     0011122344555555555555555555555431   111111 5555


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccc--CCCCCCcHHHHHH-hcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhc
Q psy8763         432 HLACSQGALDIVRLMFNLQPSEKLVCLNS--TDAQKMTPLHCAA-MFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR  508 (641)
Q Consensus       432 ~~a~~~~~~~~v~~ll~~~~~~~~~~~~~--~~~~~~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  508 (641)
                      |.|+..|+.+++++|++.+++     ++.  .+..|.||||+|+ ..|+.++|++|+++|+       .|.|||++|+..
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~-----~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~  235 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPT-----EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEY  235 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGG-----GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcCCc-----cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHC
Confidence            555555555555555553322     222  3444556666666 6666666666655543       145566666666


Q ss_pred             CCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHH---------------HHHHHHHHhh---------
Q psy8763         509 GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVA---------------AVFLGENLIN---------  564 (641)
Q Consensus       509 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~---------------~~~~~~~Ll~---------  564 (641)
                      |+.+++++|+++|++++..+    ++++.|+.+|...+.+......               ..+.+++|++         
T Consensus       236 g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~  311 (376)
T 2aja_A          236 GEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP  311 (376)
T ss_dssp             TTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSS
T ss_pred             CCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhc
Confidence            66666666666655554432    2444444444333221111100               2344555554         


Q ss_pred             cCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeeceeee
Q psy8763         565 LGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTY  635 (641)
Q Consensus       565 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~~  635 (641)
                      .|++++    .+.|||++|++.|+.++|++|++.|      .+.+..++|++.+|..+|+.++++.-++++
T Consensus       312 ~g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (376)
T 2aja_A          312 TATIPG----DANELLRLALRLGNQGACALLLSIP------SVLALTKANNYYINETGGRLDLRAVALEHH  372 (376)
T ss_dssp             CCSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH------HHHHSCC-----------------------
T ss_pred             cCCCCC----CccHHHHHHHHcCcHHHHHHHHcCh------HHHHHHHHhccccccccccccHHHHHHHHH
Confidence            344443    5668999999999999999999876      447789999999999999999998876653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.1e-29  Score=230.39  Aligned_cols=185  Identities=17%  Similarity=0.076  Sum_probs=110.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHH
Q psy8763         426 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA  505 (641)
Q Consensus       426 ~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  505 (641)
                      .|.||||.|++.+..+.++.|++++.+     ++. +..+.||||.|+..|+.+++++|+++|++++.++..|+||||+|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~-----~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMR-----VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA   77 (239)
T ss_dssp             ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCC-----ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            356666666666666666666664332     332 24566777777777777777777777777777777777777777


Q ss_pred             HhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCC-ChHHHH-
Q psy8763         506 ASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE-SPLHLA-  583 (641)
Q Consensus       506 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A-  583 (641)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.++..|. ||||+| 
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~------------~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~  145 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN------------NVQVCKFLVESGAAVFAMTYSDMQTAADKCE  145 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC------------CHHHHHHHHHcCCCcceecCCCCcchHHHHH
Confidence            7777777777777777777777777777777777777            77777777777777777776665 777777 


Q ss_pred             -HhcCCHHHHHHHHhcCCCccccccC---------CCCCChhHHHHHhhCCcceeeecee
Q psy8763         584 -ARYGRYNTVKKLLSSERGSFIINES---------DGEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       584 -~~~~~~~~v~~Ll~~g~~~~~~~~~---------d~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                       +..|+.+++++|++.|++   ++..         +..+.+++++|...|.  +++.|..
T Consensus       146 ~~~~g~~~~~~~Ll~~~a~---~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~  200 (239)
T 1ycs_B          146 EMEEGYTQCSQFLYGVQEK---MGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR  200 (239)
T ss_dssp             SSSTTCCCHHHHHHHHHHH---TTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC
T ss_pred             HhhhccHHHHHHHHHhhhc---ccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe
Confidence             666777777777777776   3333         5667777777777775  5555544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=2.6e-30  Score=234.67  Aligned_cols=210  Identities=15%  Similarity=0.170  Sum_probs=152.4

Q ss_pred             hcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHH
Q psy8763         392 AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHC  471 (641)
Q Consensus       392 ~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~  471 (641)
                      ..|.|||+.|++.+..+.++.|+++|++++.. ..+.||||.|+..|+.+++++|++.+.     +++..+..|.||||+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~-----~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVD-----DPSLPNDEGITALHN   76 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTS-----SCCCCCTTSCCHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCC-----CCCCcCCCCCCHHHH
Confidence            46899999999999999999999999999864 678999999999999999999998544     488999999999999


Q ss_pred             HHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCC-chhHHH--hhcCCCchhh
Q psy8763         472 AAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRR-NILHLL--VLNGGGHIKE  548 (641)
Q Consensus       472 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~a--~~~~~~~~~~  548 (641)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.++..|. ||||+|  +..+      
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g------  150 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG------  150 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTT------
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhc------
Confidence            9999999999999999999999999999999999999999999999999999999998887 999999  6667      


Q ss_pred             HHHHHHHHHHHHHHhhcCCccccc---------CCCCCChHHHHHhcCCHHHHHHHHhcCCC---ccccccCCCCCChhH
Q psy8763         549 FAEEVAAVFLGENLINLGACINLK---------NNSNESPLHLAARYGRYNTVKKLLSSERG---SFIINESDGEGLTPL  616 (641)
Q Consensus       549 ~~~~~~~~~~~~~Ll~~g~~~~~~---------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~d~~g~t~l  616 (641)
                            +.+++++|+++|++++..         +..+.++++++++.|.  +++.|.+.+.+   .-.....+..|.+|.
T Consensus       151 ------~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~  222 (239)
T 1ycs_B          151 ------YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPR  222 (239)
T ss_dssp             ------CCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEG
T ss_pred             ------cHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeeh
Confidence                  788999999999998876         5668999999988876  56666666654   111234567788888


Q ss_pred             HHHHh
Q psy8763         617 HIASK  621 (641)
Q Consensus       617 ~~A~~  621 (641)
                      .|...
T Consensus       223 ~yv~~  227 (239)
T 1ycs_B          223 NLLGL  227 (239)
T ss_dssp             GGEEC
T ss_pred             HHeeE
Confidence            76443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=2.1e-28  Score=210.47  Aligned_cols=165  Identities=15%  Similarity=0.104  Sum_probs=139.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccccccCC-CCCCcHHHHHHhcCCh----hHHHHHHHcCCCCCcCCCCCCCHH
Q psy8763         428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD-AQKMTPLHCAAMFDRC----DVVQYLIDEGADLNVLDKEKRSPL  502 (641)
Q Consensus       428 ~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L  502 (641)
                      .++|+.|++.|+.+.++.++..+.       +..+ ..|+||||+|+..++.    +++++|+++|+++|.++..|+|||
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~-------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGY-------EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLF   79 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSS-------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCc-------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            467889999999999888887442       2333 5689999999999875    589999999999999999999999


Q ss_pred             HHHHhcCC------HHHHHHHHHcCCCccccccCCC-chhHHHhhcCCCchhhHHHHHHHHHHHHHHhh-cCCcccccCC
Q psy8763         503 LLAASRGG------WKTVLTLVRNKANILLKDINRR-NILHLLVLNGGGHIKEFAEEVAAVFLGENLIN-LGACINLKNN  574 (641)
Q Consensus       503 ~~A~~~~~------~~~v~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~-~g~~~~~~~~  574 (641)
                      |+|+..++      .+++++|+++|++++.+|..|. ||||+|+..+....       ...+++++|++ +|++++.+|.
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~-------~~~~iv~~Ll~~~gad~~~~d~  152 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDEN-------EMIPLYKLIFSQSGLQLLIKDK  152 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHH-------HHHHHHHHHHTSTTCCTTCCCT
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChh-------hHHHHHHHHHHhcCCCCcccCC
Confidence            99998886      5789999999999999999999 99999998542211       15679999999 9999999999


Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCCCccccccCC
Q psy8763         575 SNESPLHLAARYGRYNTVKKLLSSERGSFIINESD  609 (641)
Q Consensus       575 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d  609 (641)
                      .|+||||+|++.|+.++|++|++....   .+.++
T Consensus       153 ~G~TpL~~A~~~~~~~~v~~L~~~~~~---~~~~~  184 (186)
T 3t8k_A          153 WGLTALEFVKRCQKPIALKMMEDYIKK---YNLKE  184 (186)
T ss_dssp             TSCCHHHHHHTTTCHHHHHHHHHHHHH---HTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHHHH---Hhccc
Confidence            999999999999999999999988655   44444

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=5.3e-28  Score=198.15  Aligned_cols=132  Identities=20%  Similarity=0.189  Sum_probs=119.9

Q ss_pred             ccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccC-CCchh
Q psy8763         457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDIN-RRNIL  535 (641)
Q Consensus       457 ~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l  535 (641)
                      +++..+..|.||||+|+..++.+++++|+++|++++.++..|+||||+|+. ++.+++++|+++|++++.+|.. |.|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            467888889999999999999999999999999999999999999999999 9999999999999999999988 89999


Q ss_pred             HHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         536 HLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       536 ~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      |+|+..+            +.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        83 ~~A~~~~------------~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREG------------FLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHT------------CHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcC------------CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999998            88999999999999999999999999999999999999999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=3.4e-28  Score=204.65  Aligned_cols=145  Identities=19%  Similarity=0.181  Sum_probs=120.1

Q ss_pred             ccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCc-hhHH
Q psy8763         459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRN-ILHL  537 (641)
Q Consensus       459 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~  537 (641)
                      +..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .++.+++++|+++|++++.+|..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            456778999999999999999999999999999999999999999985 89999999999999999999999999 9999


Q ss_pred             HhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHH
Q psy8763         538 LVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLH  617 (641)
Q Consensus       538 a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~  617 (641)
                      |+..+            +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.||.+
T Consensus        85 A~~~~------------~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~  149 (156)
T 1bi7_B           85 AAREG------------FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHT------------CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHCC------------CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccc
Confidence            99999            99999999999999999999999999999999999999999999999   8999999999987


Q ss_pred             HH
Q psy8763         618 IA  619 (641)
Q Consensus       618 ~A  619 (641)
                      -+
T Consensus       150 ~~  151 (156)
T 1bi7_B          150 GP  151 (156)
T ss_dssp             --
T ss_pred             cC
Confidence            44

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=1.1e-27  Score=196.26  Aligned_cols=134  Identities=22%  Similarity=0.256  Sum_probs=106.8

Q ss_pred             CcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhc
Q psy8763          22 GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDF  101 (641)
Q Consensus        22 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  101 (641)
                      +++++.+|..|+||||+|++.|+.+++++|+++|+  +++..+..|.||||+|+. |+.+++++|+++            
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~------------   66 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA--DPNALNRFGRRPIQVMMM-GSAQVAELLLLH------------   66 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH------------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCC--CcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC------------
Confidence            45777888888888888888888888888888876  556677788888888888 888888888887            


Q ss_pred             CCCcccCCCC-CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCC
Q psy8763         102 GASLKRACSN-GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK  178 (641)
Q Consensus       102 g~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~  178 (641)
                      |++++..+.. |.||||+|+..|+.+++++|+++|+++        +..+..|.|||++|+..|+.+++++|+++|+|
T Consensus        67 g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~--------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL--------DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCC--------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7788888777 788888888888888888888888776        45577778888888888888888888887764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.6e-28  Score=209.97  Aligned_cols=159  Identities=18%  Similarity=0.143  Sum_probs=141.9

Q ss_pred             CCcHHHHHHhcCChhHHHHHHHcCCCCCcCC-CCCCCHHHHHHhcCCH----HHHHHHHHcCCCccccccCCCchhHHHh
Q psy8763         465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLAASRGGW----KTVLTLVRNKANILLKDINRRNILHLLV  539 (641)
Q Consensus       465 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  539 (641)
                      ++++|+.|++.|+.+.++.+++.+.  +..+ ..|+||||+|+..++.    +++++|+++|+++|.+|..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4689999999999999999998874  4455 7799999999999975    5999999999999999999999999999


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCC-ChHHHHHhcC-----CHHHHHHHHh-cCCCccccccCCCCC
Q psy8763         540 LNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE-SPLHLAARYG-----RYNTVKKLLS-SERGSFIINESDGEG  612 (641)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~g~~~~~~~~~d~~g  612 (641)
                      ..+...+..      ..+++++|+++|+++|.+|..|. ||||+|+..+     +.+++++|++ +|++   ++.+|..|
T Consensus        84 ~~~~~~~~~------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~~G  154 (186)
T 3t8k_A           84 QGGGNDITG------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWG  154 (186)
T ss_dssp             HHCTTCHHH------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCTTS
T ss_pred             HcCCcchhh------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCCCC
Confidence            998543321      47899999999999999999999 9999999954     4569999999 9999   99999999


Q ss_pred             ChhHHHHHhhCCcceeeeceee
Q psy8763         613 LTPLHIASKEGFHYSVSIFQVT  634 (641)
Q Consensus       613 ~t~l~~A~~~~~~~~~~~l~~~  634 (641)
                      +||||+|+..|+.+++++|+..
T Consensus       155 ~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          155 LTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             CCHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=4.2e-27  Score=197.96  Aligned_cols=146  Identities=18%  Similarity=0.166  Sum_probs=108.6

Q ss_pred             cccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCC
Q psy8763          25 TRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGAS  104 (641)
Q Consensus        25 ~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~  104 (641)
                      .+..+..|.||||+|++.|+.+++++|+++|+  +++..+..|.||||+|+ .|+.+++++|+++            |++
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~------------g~~   69 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGA--NPNAPNSYGRRPIQVMM-MGSARVAELLLLH------------GAE   69 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTC--CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT------------TCC
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc------------CCC
Confidence            34567788999999999999999999999887  56677888999999885 8899999999988            888


Q ss_pred             cccCCCCCCc-HHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCC
Q psy8763         105 LKRACSNGYY-PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ  183 (641)
Q Consensus       105 ~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  183 (641)
                      ++..+..|.| |||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..|+.+++++|+++|++++.++
T Consensus        70 ~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~--------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~  141 (156)
T 1bi7_B           70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL--------DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN  141 (156)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS--------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------
T ss_pred             CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC--------cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccC
Confidence            8888888988 999999999999999999998887        4567888899999999999999999999999988888


Q ss_pred             CCCCcHHHHH
Q psy8763         184 FDLSTPVHLA  193 (641)
Q Consensus       184 ~~~~t~l~~A  193 (641)
                      ..|.||.+.+
T Consensus       142 ~~g~t~~~~~  151 (156)
T 1bi7_B          142 HARIDAAEGP  151 (156)
T ss_dssp             ----------
T ss_pred             cCcCcccccC
Confidence            8888877643

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=1e-25  Score=182.72  Aligned_cols=126  Identities=40%  Similarity=0.529  Sum_probs=120.7

Q ss_pred             CCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCC
Q psy8763         464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG  543 (641)
Q Consensus       464 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  543 (641)
                      +|.||||.|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..+ 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-
Confidence            4889999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         544 GHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                                 +.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus        80 -----------~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 -----------HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -----------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -----------hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                       89999999999999999999999999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=4.2e-26  Score=186.82  Aligned_cols=127  Identities=25%  Similarity=0.296  Sum_probs=118.5

Q ss_pred             CCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhh
Q psy8763         461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVL  540 (641)
Q Consensus       461 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~  540 (641)
                      ....+.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcC
Q psy8763         541 NGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSE  599 (641)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  599 (641)
                      .+            +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        90 ~~------------~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IG------------HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cC------------CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99            899999999999999999999999999999999999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.3e-26  Score=190.30  Aligned_cols=133  Identities=26%  Similarity=0.281  Sum_probs=88.4

Q ss_pred             CCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCC
Q psy8763         488 GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGA  567 (641)
Q Consensus       488 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~  567 (641)
                      |+|+ .++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|+
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~------------~~~~~~~Ll~~g~   67 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG------------HLKVVELLLQHKA   67 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT------------CHHHHHHHHHTTC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC------------CHHHHHHHHHcCC
Confidence            4555 45666777777777777777777777777777666666777777777666            6667777777777


Q ss_pred             cccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeeceeeee
Q psy8763         568 CINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYV  636 (641)
Q Consensus       568 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~~~  636 (641)
                      +++.+|..|.||||+|+..|+.+++++|+++|++   ++..|..|.|||++|+..++.+++++|.+..+
T Consensus        68 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             cccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            7777777777777777777777777777777776   66677777777777777777777766665543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=3.3e-25  Score=181.45  Aligned_cols=128  Identities=22%  Similarity=0.236  Sum_probs=117.3

Q ss_pred             cccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcc
Q psy8763          27 ILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLK  106 (641)
Q Consensus        27 ~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~  106 (641)
                      .....+.||||+|++.|+.+++++|+++|+  +++..+..|.||||+|+..|+.+++++|+++            |++++
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------g~~~~   74 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGA--DVNAKDEYGLTPLYLATAHGHLEIVEVLLKN------------GADVN   74 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT------------TCCTT
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc------------CCCCC
Confidence            345678999999999999999999999997  6677889999999999999999999999999            99999


Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcC
Q psy8763         107 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG  176 (641)
Q Consensus       107 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g  176 (641)
                      ..+..|.||||+|+..|+.+++++|+++|+++        +..+..|.|||++|+..|+.+++++|+++|
T Consensus        75 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV--------NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999987        566889999999999999999999999876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=1.4e-25  Score=194.16  Aligned_cols=166  Identities=19%  Similarity=0.237  Sum_probs=133.1

Q ss_pred             CccccccCCCceeeeccCCCccc----------ccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHH
Q psy8763           3 LLSVQSDNKNKSRLIPSSSGVNT----------RILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALH   72 (641)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~   72 (641)
                      ++|...++.+.++++++...-..          ...+..|+||||+|++.|+.+++++|++ |+  +++..+..|.||||
T Consensus         5 ~~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--~~~~~d~~g~t~L~   81 (183)
T 3deo_A            5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DR--DVDAVDENGRTALL   81 (183)
T ss_dssp             EEEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TS--CTTCCCTTSCCHHH
T ss_pred             HHHHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cC--CCCCcCCCCCCHHH
Confidence            56778888889998885322221          2236788899999999999999999999 76  66778888999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCC-CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccC
Q psy8763          73 IAAIYDFDECARILVSEQPECDWIMVKDFGASLKRAC-SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDA  151 (641)
Q Consensus        73 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  151 (641)
                      +|+..|+.+++++|+++            |++++..+ ..|+||||+|+..|+.+++++|+++|+++        +..|.
T Consensus        82 ~A~~~~~~~~v~~Ll~~------------ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--------~~~d~  141 (183)
T 3deo_A           82 FVAGLGSDKCVRLLAEA------------GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI--------EVEDE  141 (183)
T ss_dssp             HHHHHTCHHHHHHHHHT------------TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT--------TCCCT
T ss_pred             HHHHcCCHHHHHHHHHc------------CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC--------cCCCC
Confidence            99999999999999998            88888887 78889999999999999999999888886        45688


Q ss_pred             CCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhc
Q psy8763         152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL  208 (641)
Q Consensus       152 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~  208 (641)
                      .|.||||+|+..++.                 ..+.++|++|+..|+.+++++|.++
T Consensus       142 ~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          142 RGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            888888888764322                 2346888888888888888888754

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=7.5e-25  Score=177.51  Aligned_cols=126  Identities=31%  Similarity=0.499  Sum_probs=88.3

Q ss_pred             CCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCC
Q psy8763          31 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS  110 (641)
Q Consensus        31 ~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~  110 (641)
                      +|+||||+|++.|+.+++++|+++|+  +++..+..|.||||.|+..|+.+++++|+++            |++++..+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~------------g~~~~~~~~   66 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA------------GADVNAKDK   66 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT------------TCCTTCCCT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCC--CCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc------------CCCCcccCC
Confidence            36777777777777777777777765  4455666777777777777777777777776            666676777


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCC
Q psy8763         111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAK  178 (641)
Q Consensus       111 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~  178 (641)
                      .|.||||+|+..|+.+++++|+++|+++        +..+..|.|||++|+..|+.+++++|+++|+|
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~~--------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           67 NGRTPLHLAARNGHLEVVKLLLEAGADV--------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCCcHHHHHHHcChHHHHHHHHHcCCCC--------cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7777777777777777777777776665        34466667777777777777777777777664

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=1.8e-25  Score=183.56  Aligned_cols=130  Identities=26%  Similarity=0.249  Sum_probs=116.6

Q ss_pred             cCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHh
Q psy8763         460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLV  539 (641)
Q Consensus       460 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  539 (641)
                      .++..|.||||+|+..++.+++++|+++|++++..+..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         540 LNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      ..+            +.+++++|+++|++++.+|..|.|||++|+..+..+++++|.+.++.
T Consensus        85 ~~~------------~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           85 KNG------------HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HTT------------CHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HcC------------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            999            89999999999999999999999999999999999999888877654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=8.9e-25  Score=198.38  Aligned_cols=170  Identities=16%  Similarity=0.058  Sum_probs=91.8

Q ss_pred             CCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCC
Q psy8763          31 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS  110 (641)
Q Consensus        31 ~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~  110 (641)
                      .+.+++.+++..|+.+.+..+...+..  +   +..|.||||.|+..|+.+++++|++             |++++..+.
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~--~---~~~g~t~L~~A~~~g~~~~v~~Ll~-------------~~~~~~~d~   75 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAAD--V---VSEYETPWWTAARKADEQALSQLLE-------------DRDVDAVDE   75 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHH--H---HHHHHHHHHHHHTTTCHHHHHHTTT-------------TCCTTCBCT
T ss_pred             CCccHHHHHHHcCCCcccccccccccc--c---ccCCCCHHHHHHHcCCHHHHHHHHc-------------CCCCCCcCC
Confidence            344444445555554444443333321  1   1345555555555555555555554             344555555


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhcccc-CCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcH
Q psy8763         111 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFD-AEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP  189 (641)
Q Consensus       111 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~  189 (641)
                      .|.||||+|+..|+.+++++|+++|++++        ..+ ..|.||||+|+..|+.++|++|+++|++++.++..|.||
T Consensus        76 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  147 (244)
T 3ui2_A           76 NGRTALLFVAGLGSDKCVRLLAEAGADLD--------HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA  147 (244)
T ss_dssp             TSCBHHHHHHHHTCHHHHHHHHHTTCCTT--------CCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCC--------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            55555555555555555555555555542        223 445666666666666666666666666666666666666


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCC
Q psy8763         190 VHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA  248 (641)
Q Consensus       190 l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~  248 (641)
                      ||+|+..++.         .             .+.|||++|+..|+.+++++|++++.
T Consensus       148 l~~A~~~~~~---------~-------------~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          148 LELAREILKT---------T-------------PKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHHTT---------C-------------CCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHHhc---------c-------------CCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            6666543221         1             23566666666666666666666543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=9.4e-25  Score=203.77  Aligned_cols=140  Identities=18%  Similarity=0.108  Sum_probs=124.8

Q ss_pred             CCcHHHHHHhcCChhHHHHHHHcCCCCCc------CCCCCCCHHHHHHhc---CCHHHHHHHHHcCCCccccccCCCchh
Q psy8763         465 KMTPLHCAAMFDRCDVVQYLIDEGADLNV------LDKEKRSPLLLAASR---GGWKTVLTLVRNKANILLKDINRRNIL  535 (641)
Q Consensus       465 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l  535 (641)
                      ..++|+.|+..++.+.++.|++.|++++.      .+..|+||||+|+..   ++.+++++|+++|++++.+|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            44679999999999999999999999998      688999999999987   899999999999999999999999999


Q ss_pred             HHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChh
Q psy8763         536 HLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTP  615 (641)
Q Consensus       536 ~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~  615 (641)
                      |+|+..+            +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++         .|.||
T Consensus       231 h~A~~~g------------~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tp  289 (301)
T 2b0o_E          231 HYAALYN------------QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFP  289 (301)
T ss_dssp             HHHHHTT------------CHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSC
T ss_pred             HHHHHcC------------CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCCh
Confidence            9999999            99999999999999999999999999999999999999999999976         57899


Q ss_pred             HHHHHhhCCc
Q psy8763         616 LHIASKEGFH  625 (641)
Q Consensus       616 l~~A~~~~~~  625 (641)
                      ||+|++.|+.
T Consensus       290 Lh~A~~~g~~  299 (301)
T 2b0o_E          290 LHVDYSWVIS  299 (301)
T ss_dssp             CC--------
T ss_pred             hHHHHhcCCc
Confidence            9999999874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=3.6e-25  Score=200.98  Aligned_cols=143  Identities=22%  Similarity=0.266  Sum_probs=129.5

Q ss_pred             ccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCccc
Q psy8763          28 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR  107 (641)
Q Consensus        28 ~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~  107 (641)
                      .+..|.||||+|++.|+.+++++|++ |+  +++..+..|.||||+|+..|+.++|++|+++            |++++.
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~------------ga~~~~  105 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEA------------GADLDH  105 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TC--CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT------------TCCTTC
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CC--CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc------------CCCCCc
Confidence            45689999999999999999999999 76  6778899999999999999999999999999            999999


Q ss_pred             CC-CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCC
Q psy8763         108 AC-SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL  186 (641)
Q Consensus       108 ~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  186 (641)
                      .+ ..|.||||+|+..|+.+++++|+++|+++        +..+..|.||||+|+..++                 ...+
T Consensus       106 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--------~~~d~~g~t~l~~A~~~~~-----------------~~~~  160 (244)
T 3ui2_A          106 RDMRGGLTALHMAAGYVRPEVVEALVELGADI--------EVEDERGLTALELAREILK-----------------TTPK  160 (244)
T ss_dssp             CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT--------TCCCTTCCCHHHHHHHHHT-----------------TCCC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--------CCCCCCCCcHHHHHHHHHh-----------------ccCC
Confidence            88 88999999999999999999999999997        5678999999999986322                 1456


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCC
Q psy8763         187 STPVHLACSQGALDIVRLMFNLQP  210 (641)
Q Consensus       187 ~t~l~~A~~~g~~~iv~~Ll~~~~  210 (641)
                      .|||++|+..|+.+++++|+++..
T Consensus       161 ~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          161 GNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             CCHHHHHHHcChHHHHHHHHHhcc
Confidence            899999999999999999998643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=7.1e-25  Score=189.77  Aligned_cols=137  Identities=22%  Similarity=0.266  Sum_probs=82.5

Q ss_pred             CCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccc-cCCCchhHHHhhcC
Q psy8763         464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLNG  542 (641)
Q Consensus       464 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~  542 (641)
                      .|.||||+|+..|+.+++++|++ |++++..+..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..+
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcC
Confidence            45566666666666666666666 66666666666666666666666666666666666666555 55666666666666


Q ss_pred             CCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhh
Q psy8763         543 GGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE  622 (641)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~  622 (641)
                                  +.+++++|+++|++++.+|..|.||||+|++.++.                    ..+.+||++|+..
T Consensus       122 ------------~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~  169 (183)
T 3deo_A          122 ------------RPEVVEALVELGADIEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRI  169 (183)
T ss_dssp             ------------CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHH
T ss_pred             ------------cHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHc
Confidence                        56666666666666666666666666666543211                    1334566666666


Q ss_pred             CCcceeeecee
Q psy8763         623 GFHYSVSIFQV  633 (641)
Q Consensus       623 ~~~~~~~~l~~  633 (641)
                      |+.+++++|.+
T Consensus       170 ~~~~i~~~L~~  180 (183)
T 3deo_A          170 GLEKVINVLEG  180 (183)
T ss_dssp             HHHHHHHHHHT
T ss_pred             CHHHHHHHHHH
Confidence            66666666544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=2.6e-24  Score=172.69  Aligned_cols=108  Identities=22%  Similarity=0.160  Sum_probs=57.1

Q ss_pred             CCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCC
Q psy8763         464 QKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG  543 (641)
Q Consensus       464 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  543 (641)
                      .|.||||+|+..++.+++++|+++|++++..+..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+ 
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~-   84 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG-   84 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT-
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC-
Confidence            3445555555555555555555555555555555555555555555555555555555555555555555555555554 


Q ss_pred             CchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHH
Q psy8763         544 GHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLA  583 (641)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  583 (641)
                                 +.+++++|+++|++++.+|..|.||||+|
T Consensus        85 -----------~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           85 -----------HVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             -----------CHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             -----------CHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence                       44555555555555555555555555555

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=4.4e-24  Score=171.40  Aligned_cols=118  Identities=22%  Similarity=0.196  Sum_probs=102.1

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCC
Q psy8763         495 DKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN  574 (641)
Q Consensus       495 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~  574 (641)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~g~~~~~~d~   71 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG------------QLEILEFLLLKGADINAPDK   71 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTT------------CHHHHHHHHTTTCCTTCCCT
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcC------------CHHHHHHHHHcCCCCCcCCC
Confidence            456788999999999999999999999999999999999999999988            88899999999999999999


Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcce
Q psy8763         575 SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYS  627 (641)
Q Consensus       575 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~  627 (641)
                      .|+||||+|+..|+.+++++|+++|++   ++..|..|.|||++|...+..++
T Consensus        72 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           72 HHITPLLSAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCCHHHHHH
Confidence            999999999999999999999999988   88889999999999866554443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2e-24  Score=193.89  Aligned_cols=129  Identities=20%  Similarity=0.182  Sum_probs=116.3

Q ss_pred             CCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHc-CCCccccccCCCchhHHHh
Q psy8763         461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN-KANILLKDINRRNILHLLV  539 (641)
Q Consensus       461 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~a~  539 (641)
                      .+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            455688999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         540 LNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      ..+            +.+++++|+++|++++.+|..|.|||++|+..++.++++.|++.|+.
T Consensus       149 ~~~------------~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          149 WKG------------YADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             HHT------------CHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             HcC------------CHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            999            99999999999999999999999999999999999999999999998

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=2.8e-23  Score=191.52  Aligned_cols=192  Identities=19%  Similarity=0.104  Sum_probs=145.3

Q ss_pred             hhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHH
Q psy8763         391 AAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD-LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL  469 (641)
Q Consensus       391 ~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L  469 (641)
                      |..+.+.++.+...|+..+.+++...-.+....... .....+    ....-..+++.......    .+.......++|
T Consensus        63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~----~~~~~~~~l~~l  134 (278)
T 1dcq_A           63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARK----KHADTAAKLHSL  134 (278)
T ss_dssp             SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCC----CSSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccc----cccccchhhhhh
Confidence            456777889888888877766654332221111111 111111    11111222333211110    111122234689


Q ss_pred             HHHHhcCChhHHHHHHHcCCCCC------cCCCCCCCHHHHHHhc---CCHHHHHHHHHcCCCccccccCCCchhHHHhh
Q psy8763         470 HCAAMFDRCDVVQYLIDEGADLN------VLDKEKRSPLLLAASR---GGWKTVLTLVRNKANILLKDINRRNILHLLVL  540 (641)
Q Consensus       470 ~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~  540 (641)
                      +.|+..++.+.++.+++.|++++      ..+..|+||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+.
T Consensus       135 ~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL  214 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHH
T ss_pred             hhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHH
Confidence            99999999999999999999954      4478899999999998   89999999999999999999999999999999


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCc
Q psy8763         541 NGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGS  602 (641)
Q Consensus       541 ~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  602 (641)
                      .+            +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       215 ~g------------~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          215 TD------------NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cC------------CHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99            999999999999999999999999999999999999999999999873

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=2e-23  Score=187.33  Aligned_cols=135  Identities=17%  Similarity=0.140  Sum_probs=75.3

Q ss_pred             ccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCccc
Q psy8763          28 LNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR  107 (641)
Q Consensus        28 ~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~  107 (641)
                      .+..|.||||+|+..|+.+++++|++.|+  +++..+..|.||||+|+..|+.++|++|+++.           |++++.
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-----------g~~~~~  135 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRV--GVNGLDKAGSTALYWACHGGHKDIVEMLFTQP-----------NIELNQ  135 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTST-----------TCCCCC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCC--CccccCCCCCCHHHHHHHcCCHHHHHHHHcCC-----------CCCccc
Confidence            44555666666666666666666666664  44455566666666666666666666666542           555666


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCC
Q psy8763         108 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ  183 (641)
Q Consensus       108 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  183 (641)
                      .+..|.||||+|+..|+.+++++|+++|+++        +..+..|.|||++|+..|..++++.|++.|+.....+
T Consensus       136 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          136 QNKLGDTALHAAAWKGYADIVQLLLAKGART--------DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS--------CCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--------ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            6666666666666666666666666666655        3445566666666666666666666666665554443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=1.1e-22  Score=189.86  Aligned_cols=140  Identities=21%  Similarity=0.128  Sum_probs=122.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCccc------CCCCCCcHHHHHHHh---CCHHHHHHHHHhccc
Q psy8763          67 GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKR------ACSNGYYPIHDAAKN---ASSKTMEVFLQFGES  137 (641)
Q Consensus        67 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~  137 (641)
                      ..++|+.|+..|+.+.++.|++.            |++++.      .+..|.||||+|+..   |+.+++++|+++|++
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~------------g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad  218 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFAN------------GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH  218 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHT------------TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhc------------CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC
Confidence            45779999999999999999998            888877      688999999999997   899999999999999


Q ss_pred             CCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCcccccc
Q psy8763         138 IGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCL  217 (641)
Q Consensus       138 ~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~  217 (641)
                      +        +..|..|.||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.+++++|++++++      
T Consensus       219 v--------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------  284 (301)
T 2b0o_E          219 L--------DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------  284 (301)
T ss_dssp             T--------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------
T ss_pred             C--------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------
Confidence            7        56788999999999999999999999999999999999999999999999999999999998764      


Q ss_pred             ccCCCCCCcHHHHHHhcCcH
Q psy8763         218 NSTDAQKMTPLHCAAMFDRC  237 (641)
Q Consensus       218 ~~~~~~~~t~L~~A~~~~~~  237 (641)
                           .|.||||+|+.+|+.
T Consensus       285 -----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 -----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             -----TTSSCCC--------
T ss_pred             -----CCCChhHHHHhcCCc
Confidence                 478999999998864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=6.3e-23  Score=195.21  Aligned_cols=151  Identities=19%  Similarity=0.192  Sum_probs=120.5

Q ss_pred             CCCCCcHHHHHHhc-CChhHHHHHHHcCCCCCcCC--CCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHH
Q psy8763         462 DAQKMTPLHCAAMF-DRCDVVQYLIDEGADLNVLD--KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLL  538 (641)
Q Consensus       462 ~~~~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  538 (641)
                      ...+.|+||.|+.. ++.+++++|+++|++++..+  ..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34566899999999 99999999999999999988  8999999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHH
Q psy8763         539 VLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHI  618 (641)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~  618 (641)
                      +..+            +.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.+.........+..+.|++++
T Consensus       276 ~~~g------------~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i  343 (368)
T 3jue_A          276 TILG------------HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI  343 (368)
T ss_dssp             HHHT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------
T ss_pred             HHcC------------cHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHH
Confidence            9999            9999999999999999999999999999999999999999999886544355667788899988


Q ss_pred             HHhhCC
Q psy8763         619 ASKEGF  624 (641)
Q Consensus       619 A~~~~~  624 (641)
                      +.....
T Consensus       344 ~~~~~~  349 (368)
T 3jue_A          344 FRDFSL  349 (368)
T ss_dssp             ------
T ss_pred             HHHHHh
Confidence            776643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=9.2e-22  Score=148.62  Aligned_cols=92  Identities=39%  Similarity=0.499  Sum_probs=70.8

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCC
Q psy8763         498 KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE  577 (641)
Q Consensus       498 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~  577 (641)
                      |+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|..|.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~------------~~~~v~~Ll~~ga~~~~~d~~g~   69 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG------------HLEVVKLLLEAGADVNAKDKNGR   69 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC------------CHHHHHHHHHcCCCCCccCCCCC
Confidence            677777777777777777777777777777777777777777777            77777777777777777777888


Q ss_pred             ChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         578 SPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       578 t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      ||||+|+..|+.+++++|+++|++
T Consensus        70 t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           70 TPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC
Confidence            888888888888888888877764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.9e-21  Score=146.88  Aligned_cols=93  Identities=29%  Similarity=0.453  Sum_probs=87.4

Q ss_pred             CCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCC
Q psy8763          31 KKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACS  110 (641)
Q Consensus        31 ~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~  110 (641)
                      +|+||||+|+..|+.+++++|+++|+  +++.++..|.||||+|+..|+.+++++|+++            |++++.++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~------------ga~~~~~d~   66 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA------------GADVNAKDK   66 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------------TCCTTCCCT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHHHHcCCHHHHHHHHHc------------CCCCCccCC
Confidence            48999999999999999999999997  6778899999999999999999999999999            999999999


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHhccc
Q psy8763         111 NGYYPIHDAAKNASSKTMEVFLQFGES  137 (641)
Q Consensus       111 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~  137 (641)
                      .|.||||+|+..|+.+++++|+++|++
T Consensus        67 ~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           67 NGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.1e-20  Score=174.10  Aligned_cols=132  Identities=15%  Similarity=0.162  Sum_probs=120.1

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhC---CCHHHHHHHHHcCCCCCcCCCCCCc
Q psy8763         112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHG---GDFKAVELCLKSGAKISTQQFDLST  188 (641)
Q Consensus       112 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~t  188 (641)
                      ..++|+.|+..|+.+.++.+++.|++++..  ..++..+..|.||||+|+..   |+.++|++|+++|++++.++..|.|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~--~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~T  207 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEK--IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSB--CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhh--ccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCC
Confidence            347999999999999999999999986422  11345578899999999999   8999999999999999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCC
Q psy8763         189 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL  250 (641)
Q Consensus       189 ~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~  250 (641)
                      |||+|+..|+.+++++|++++++     ++..+..|.||||+|+..|+.+++++|+++|++.
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad-----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKAS-----IEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-----CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999998     6899999999999999999999999999999854

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=4.3e-21  Score=182.59  Aligned_cols=163  Identities=23%  Similarity=0.191  Sum_probs=106.4

Q ss_pred             CCCchHHHHHHHc-CCHHHHHHHHhcCCCcchhHhhhcCCCcccCC--CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCc
Q psy8763          65 EHGRTALHIAAIY-DFDECARILVSEQPECDWIMVKDFGASLKRAC--SNGYYPIHDAAKNASSKTMEVFLQFGESIGCS  141 (641)
Q Consensus        65 ~~g~t~L~~A~~~-g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  141 (641)
                      ..+.|+||.|+.. |+.+++++|+++            |++++..+  ..|.||||+|+..|+.+++++|+++|+++   
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~------------Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv---  261 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAH------------GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV---  261 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHT------------TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHc------------CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC---
Confidence            3456788888888 888888888888            88888877  78888888888888888888888888886   


Q ss_pred             hhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCC
Q psy8763         142 REEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD  221 (641)
Q Consensus       142 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  221 (641)
                           +..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+..+.....  ....+
T Consensus       262 -----n~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~--~~~~~  334 (368)
T 3jue_A          262 -----NQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE--AAQGQ  334 (368)
T ss_dssp             -----TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------
T ss_pred             -----CCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc--ccccC
Confidence                 45678888888888888888888888888888888888888888888888888888888876644311  12334


Q ss_pred             CCCCcHHHHHHhcCc--HHHHHHHHHcCCC
Q psy8763         222 AQKMTPLHCAAMFDR--CDVVQYLIDEGAD  249 (641)
Q Consensus       222 ~~~~t~L~~A~~~~~--~~iv~~Ll~~g~~  249 (641)
                      ..+.|++..+.....  .+-.+.|..++.+
T Consensus       335 ~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~  364 (368)
T 3jue_A          335 AGDETYLDIFRDFSLMASDDPEKLSRRSHD  364 (368)
T ss_dssp             ------------------------------
T ss_pred             CCCCCHHHHHHHHHhhcCCCHHHHHhcCCC
Confidence            455666665554432  2334444444443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=2.7e-21  Score=152.98  Aligned_cols=107  Identities=25%  Similarity=0.291  Sum_probs=72.0

Q ss_pred             CCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccC
Q psy8763         494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN  573 (641)
Q Consensus       494 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~  573 (641)
                      +|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~------------~~~~~~~Ll~~g~~~~~~d   72 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG------------HAEIVKLLLAKGADVNARS   72 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTT------------CHHHHHHHTTTTCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC------------cHHHHHHHHHcCCCCcccC
Confidence            4556666666666666666666666666666666666666666666666            6666666666666666666


Q ss_pred             CCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChh
Q psy8763         574 NSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTP  615 (641)
Q Consensus       574 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~  615 (641)
                      ..|.||||+|+..++.+++++|+++|++   ++..+..|.||
T Consensus        73 ~~g~tpl~~A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~  111 (115)
T 2l6b_A           73 KDGNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSHH  111 (115)
T ss_dssp             TTCCCTTHHHHTTTCHHHHHHHHTTSSS---HHHHSCCCC--
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCcCCcccccc
Confidence            6777777777777777777777777766   66666666665

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=4.2e-21  Score=151.88  Aligned_cols=108  Identities=28%  Similarity=0.287  Sum_probs=93.7

Q ss_pred             cCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHh
Q psy8763         460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLV  539 (641)
Q Consensus       460 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~  539 (641)
                      .+|..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            35777889999999999999999999889888888888999999999888999999999999998888888999999998


Q ss_pred             hcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCCh
Q psy8763         540 LNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESP  579 (641)
Q Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  579 (641)
                      ..+            ..+++++|+++|++++.++..|.||
T Consensus        84 ~~~------------~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 KNG------------HHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTT------------CHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HCC------------CHHHHHHHHHcCCCCCcCCcccccc
Confidence            888            8888999999999999888888877

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.75  E-value=3.5e-18  Score=133.21  Aligned_cols=97  Identities=19%  Similarity=0.184  Sum_probs=84.6

Q ss_pred             CCcccccccCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhh
Q psy8763          21 SGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKD  100 (641)
Q Consensus        21 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  100 (641)
                      .+......|..|.||||+|+..|+.+++++|+++|+  +++..|..|.||||+|+..|+.+++++|+++           
T Consensus        13 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-----------   79 (110)
T 2zgd_A           13 LVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGA--DVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-----------   79 (110)
T ss_dssp             ---------CCHHHHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----------
T ss_pred             CCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-----------
Confidence            444567789999999999999999999999999997  6677889999999999999999999999999           


Q ss_pred             cCCCcccCCCCCCcHHHHHHHhCCHHHHHHH
Q psy8763         101 FGASLKRACSNGYYPIHDAAKNASSKTMEVF  131 (641)
Q Consensus       101 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  131 (641)
                       |++++..+..|.||||+|+..|+.+++++|
T Consensus        80 -ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           80 -GADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             -CCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence             999999999999999999999999999986

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=3.3e-18  Score=133.37  Aligned_cols=88  Identities=25%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCC
Q psy8763         496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNS  575 (641)
Q Consensus       496 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~  575 (641)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|..
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~------------~~~~v~~Ll~~ga~~~~~d~~   89 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG------------HLEVVKLLLEAGADVXAQDKF   89 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTT
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC------------CHHHHHHHHHcCCCccccccC
Confidence            33444444444444444444444444444444444444444444444            444444444444444444444


Q ss_pred             CCChHHHHHhcCCHHHHHHH
Q psy8763         576 NESPLHLAARYGRYNTVKKL  595 (641)
Q Consensus       576 g~t~L~~A~~~~~~~~v~~L  595 (641)
                      |.||||+|+..|+.+++++|
T Consensus        90 g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             SCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHh
Confidence            55555555555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	641
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-50
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-47
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-47
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-35
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-26
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-22
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-22
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-14
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-18
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-18
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.004
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  177 bits (449), Expect = 4e-50
 Identities = 105/433 (24%), Positives = 173/433 (39%), Gaps = 39/433 (9%)

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
           TP+H+A   G L IV+ +      ++    N ++ +  TPLH AA     +V +YL+   
Sbjct: 2   TPLHVASFMGHLPIVKNLL-----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 56

Query: 248 ADLNVLDKEKRSPLLLAASRGGWKT------NGVNTRILNNKKQAVLHLATELNKVPILL 301
           A +N   K+ ++PL  AA  G          N  N  +        LH+A     V  +L
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 302 ILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAA 361
            LL+ +     +   + G T LH+AA Y     A +L+ +  A    A  NG  P+H A 
Sbjct: 117 ALLEKEASQACM--TKKGFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAV 173

Query: 362 KNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKIS 421
            + +   +++ L  G S               G  PLH A      +     L+ G   +
Sbjct: 174 HHNNLDIVKLLLPRGGSPHSPAW--------NGYTPLHIAAKQNQVEVARSLLQYGGSAN 225

Query: 422 TQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVV 481
            +     TP+HLA  +G  ++V L+ + Q        N  +   +TPLH  A      V 
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQA-----NGNLGNKSGLTPLHLVAQEGHVPVA 280

Query: 482 QYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLN 541
             LI  G  ++   +   +PL +A+  G  K V  L++++A++  K     + LH     
Sbjct: 281 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 340

Query: 542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG 601
           G   I               L+  GA  N  ++   +PL +A R G  +    L      
Sbjct: 341 GHTDIVTL------------LLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 388

Query: 602 SFIINESDGEGLT 614
           +  +  SD   ++
Sbjct: 389 TSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (432), Expect = 1e-47
 Identities = 98/414 (23%), Positives = 165/414 (39%), Gaps = 37/414 (8%)

Query: 225 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT------NGVNTR 278
           +TPLH A+      +V+ L+  GA  NV + +  +PL +AA  G  +       N     
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 279 ILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
                 Q  LH A  +    ++ +LL+     ++     H        A  +      + 
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT---PLHIAAREGHVETVLA 117

Query: 339 VKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPL 398
           + +  AS       G+ P+H AAK    +  E+ L+       + +         G  PL
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK--------NGLTPL 169

Query: 399 HSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCL 458
           H AVH  +   V+L L  G    +  ++  TP+H+A  Q  +++ R +            
Sbjct: 170 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG-----SA 224

Query: 459 NSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV 518
           N+   Q +TPLH AA     ++V  L+ + A+ N+ +K   +PL L A  G       L+
Sbjct: 225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
           ++   +          LH+    G   + +F             +   A +N K     S
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFL------------LQHQADVNAKTKLGYS 332

Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
           PLH AA+ G  + V  LL  + G+   NE   +G TPL IA + G+     + +
Sbjct: 333 PLHQAAQQGHTDIVTLLL--KNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (428), Expect = 4e-47
 Identities = 98/469 (20%), Positives = 169/469 (36%), Gaps = 71/469 (15%)

Query: 69  TALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTM 128
           T LH+A+        + L+              GAS   +      P+H AA+   ++  
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR------------GASPNVSNVKVETPLHMAARAGHTEVA 49

Query: 129 EVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 188
           +  LQ    +             +   PLH A   G    V+L L++ A  +       T
Sbjct: 50  KYLLQNKAKVNAK--------AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT 101

Query: 189 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGA 248
           P+H+A  +       +   L   EK         +  TPLH AA + +  V + L++  A
Sbjct: 102 PLHIAARE-----GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 156

Query: 249 DLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKD 308
             N   K   +PL +A                        +L          ++ L    
Sbjct: 157 HPNAAGKNGLTPLHVAVHHN--------------------NLD---------IVKLLLPR 187

Query: 309 MIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKT 368
                    +G T LHIAA  +  E AR L++  G++       G  P+H AA+   ++ 
Sbjct: 188 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEM 246

Query: 369 MEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 428
           + +          S++   +L    G  PLH     G     ++ +K G  +        
Sbjct: 247 VALL--------LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 298

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
           TP+H+A   G + +V+ +   Q       +N+      +PLH AA     D+V  L+  G
Sbjct: 299 TPLHVASHYGNIKLVKFLLQHQA-----DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 353

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTV---LTLVRNKANILLKDINRRNI 534
           A  N +  +  +PL +A   G          +    + +L+ D +R + 
Sbjct: 354 ASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (339), Expect = 5e-35
 Identities = 94/484 (19%), Positives = 152/484 (31%), Gaps = 106/484 (21%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             G +  + N K +  LH+A       +   LLQ K    +    +  +T LH AA    
Sbjct: 21  QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK--AKVNAKAKDDQTPLHCAARIGH 78

Query: 80  DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 139
               ++L+      +             A       +                       
Sbjct: 79  TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA--------------------L 118

Query: 140 CSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 199
             +E   +    +G  PLH A   G  +  EL L+  A                      
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-------------------- 158

Query: 200 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRS 259
                             N+     +TPLH A   +  D+V+ L+  G   +       +
Sbjct: 159 ------------------NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 200

Query: 260 PLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 319
           P                           LH+A + N+V +   LLQY    +       G
Sbjct: 201 P---------------------------LHIAAKQNQVEVARSLLQYGGSAN--AESVQG 231

Query: 320 RTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESI 379
            T LH+AA     E   + +    A+      +G  P+H  A+       +V ++ G  +
Sbjct: 232 VTPLHLAAQEGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

Query: 380 GCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGA 439
             +     +        PLH A H G+ K V+  L+  A ++ +     +P+H A  QG 
Sbjct: 291 DATTRMGYT--------PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 342

Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL---IDEGADLNVLDK 496
            DIV L+      +     N   +   TPL  A       V   L    DE + + V DK
Sbjct: 343 TDIVTLLL-----KNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 397

Query: 497 EKRS 500
            + S
Sbjct: 398 HRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 5e-26
 Identities = 67/286 (23%), Positives = 114/286 (39%), Gaps = 28/286 (9%)

Query: 356 PIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK 415
           P+H A+       ++  LQ G S   S  +           PLH A   G  +  +  L+
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVK--------VETPLHMAARAGHTEVAKYLLQ 54

Query: 416 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 475
           + AK++ +  D  TP+H A   G  ++V+L+      E     N       TPLH AA  
Sbjct: 55  NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL-----ENNANPNLATTAGHTPLHIAARE 109

Query: 476 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNIL 535
              + V  L+++ A    + K+  +PL +AA  G  +    L+   A+      N    L
Sbjct: 110 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL 169

Query: 536 HLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
           H+ V +    I +             L+  G   +    +  +PLH+AA+  +    + L
Sbjct: 170 HVAVHHNNLDIVKL------------LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

Query: 596 LSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWCSYC 641
           L         N    +G+TPLH+A++EG    V++        +  
Sbjct: 218 LQYG---GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 260

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 1e-26
 Identities = 68/345 (19%), Positives = 114/345 (33%), Gaps = 66/345 (19%)

Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL-STPVHLACSQGALDIVRLMFNLQP 210
           E N  L  AV   D   V+  L+ GA ++ Q+ +   TP+H A      DIV L+     
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 211 SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW 270
                          TP   AA+     +++  + +GAD+N  D    +  + AA  G  
Sbjct: 64  -----DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 118

Query: 271 KTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
           K      +   N                      + K   D  +  + G TAL  AA   
Sbjct: 119 KALKFLYKRGANVNL-------------------RRKTKEDQERLRKGGATALMDAAEKG 159

Query: 331 FDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLF 390
             E  +IL+ + GA +    + G   +  A  ++    +E                    
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL--------------- 204

Query: 391 AAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQ 450
                                  L  GA ++ +     TP+ LA  +  L +V+ +    
Sbjct: 205 ----------------------LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL--- 239

Query: 451 PSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
             ++ + +N TD+   T L  A       + + L   GA  +  D
Sbjct: 240 -EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 4e-26
 Identities = 62/280 (22%), Positives = 107/280 (38%), Gaps = 50/280 (17%)

Query: 391 AAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL-STPVHLACSQGALDIVRLM--- 446
           A E N  L  AV   D   V+  L+ GA ++ Q+ +   TP+H A      DIV L+   
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 447 -------------------------FNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVV 481
                                           K   +N  D    T    AA++ +   +
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 482 QYLIDEGADLNVLD----------KEKRSPLLLAASRGGWKTVLTLV-RNKANILLKDIN 530
           ++L   GA++N+            K   + L+ AA +G  + +  L+    A++   D  
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 531 RRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYN 590
            RN L   +L+      E         +   L++ GA +N++    ++PL LA       
Sbjct: 182 GRNALIHALLSSDDSDVEA--------ITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 591 TVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSI 630
            V++LL  E+    IN++D +G T L +A +        +
Sbjct: 234 LVQRLL--EQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 1e-23
 Identities = 58/308 (18%), Positives = 110/308 (35%), Gaps = 34/308 (11%)

Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
             L  A   +  D+VQ L++ GA++N  ++E           GGW               
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-----------GGW--------------- 40

Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
             LH A ++++  I+ +LL++     + +          + A          L    GA 
Sbjct: 41  TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP---FLLAAIAGSVKLLKLFLSKGAD 97

Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE--EMISLFAAEGNLPLHSAVH 403
           +      G+    +AA     K ++   + G ++   R+  E        G   L  A  
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 404 GGDFKAVELCL-KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD 462
            G  + +++ L + GA ++         +  A        V  + +    +    +N   
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH-LLLDHGADVNVRG 216

Query: 463 AQKMTPLHCAAMFDRCDVVQYLID-EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNK 521
            +  TPL  A       +VQ L++ E  ++N  D + ++ LLLA      K    L +  
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276

Query: 522 ANILLKDI 529
           A+    D+
Sbjct: 277 ASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 2e-21
 Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 31/290 (10%)

Query: 319 GRTALHIAAIYDFDECARILVKDFGASL-KRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
               L  A   +  +  + L+ + GA++  +    G+ P+H+A + +    +E+ L+ G 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 378 SIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQ 437
                ++   + F          A   G  K ++L L  GA ++   F   T    A   
Sbjct: 64  DPVLRKKNGATPF--------LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115

Query: 438 GALDIVRLMFNLQP-----SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE-GADL 491
           G +  ++ ++          +             T L  AA     +V++ L+DE GAD+
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175

Query: 492 NVLDKEKRSPLLLAASRGGWKTVL----TLVRNKANILLKDINRRNILHLLVLNGGGHIK 547
           N  D   R+ L+ A        V      L+ + A++ ++    +  L L V      + 
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235

Query: 548 EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
           +             L      IN  ++  ++ L LA         + L  
Sbjct: 236 QRL-----------LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 3e-21
 Identities = 51/289 (17%), Positives = 103/289 (35%), Gaps = 15/289 (5%)

Query: 287 VLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASL 346
           +L  A +   V ++  LL+    ++  Q  E G T LH A     ++   +L++     +
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 347 KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGD 406
            R  +     +  A   +         +  +   C      +   A     + +      
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 407 FKA-VELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQK 465
             A V L  K+       +   +T +  A  +G +++++++ +   ++   C N      
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLV-RNKANI 524
           +  L  +   D   +   L+D GAD+NV  +  ++PL+LA  +     V  L+ +    I
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

Query: 525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN 573
              D + +  L L V      I E             L   GA  +  +
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAEL------------LCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 5e-20
 Identities = 55/312 (17%), Positives = 106/312 (33%), Gaps = 40/312 (12%)

Query: 35  VLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECD 94
           +L  A +   V ++  LL+    ++  Q  E G T LH A     ++   +L+    +  
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 95  WIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGN 154
                     L  A +     +       +      F  F   +  +    +        
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 155 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 214
              +  +     +  E   K GA          T +  A  +G +++++++ +   ++  
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGA----------TALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNG 274
            C N      +  L  +   D   +   L+D GAD+NV  +  ++P              
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP-------------- 222

Query: 275 VNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDEC 334
                        L LA E   + ++  LL+ +  I+I      G+TAL +A      + 
Sbjct: 223 -------------LILAVEKKHLGLVQRLLEQEH-IEINDTDSDGKTALLLAVELKLKKI 268

Query: 335 ARILVKDFGASL 346
           A +L K  GAS 
Sbjct: 269 AELLCK-RGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 1e-16
 Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 9/189 (4%)

Query: 66  HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
           +G TA   AA+Y   +  + L       +           +R    G   + DAA+    
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRR--KTKEDQERLRKGGATALMDAAEKGHV 161

Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 185
           + +++ L   + +G       ++        L S+          L L  GA ++ +   
Sbjct: 162 EVLKILL---DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 218

Query: 186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 245
             TP+ LA  +  L +V+ +      ++ + +N TD+   T L  A       + + L  
Sbjct: 219 GKTPLILAVEKKHLGLVQRLL----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 246 EGADLNVLD 254
            GA  +  D
Sbjct: 275 RGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 2e-16
 Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 31/293 (10%)

Query: 108 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFK 167
           A     + +  A +N     ++  L+ G ++    EE        G  PLH+AV      
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-------GWTPLHNAVQMSRED 53

Query: 168 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP 227
            VEL L+ GA    ++ + +TP  LA   G      +        K   +N  D    T 
Sbjct: 54  IVELLLRHGADPVLRKKNGATPFLLAAIAG-----SVKLLKLFLSKGADVNECDFYGFTA 108

Query: 228 LHCAAMFDRCDVVQYLIDEGADLNVLD----------KEKRSPLLLAASRGGWKT----- 272
              AA++ +   +++L   GA++N+            K   + L+ AA +G  +      
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

Query: 273 --NGVNTRILNNKKQAVLHLATELNKVPILLILLQY--KDMIDILQGGEHGRTALHIAAI 328
              G +    +N  +  L  A   +    +  +         D+   GE G+T L +A  
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228

Query: 329 YDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC 381
                  + L++     +    S+G   +  A +    K  E+  + G S  C
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
             G +  +   + +  L LA E   + ++  LL+ +  I+I      G+TAL +A     
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH-IEINDTDSDGKTALLLAVELKL 265

Query: 80  DECARILVS 88
            + A +L  
Sbjct: 266 KKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 6e-05
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 576 NESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTY 635
           +   L  A +    + V++LL  E G+ +  + +  G TPLH A +      V +     
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLL--EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 636 VWCSYC 641
                 
Sbjct: 63  ADPVLR 68

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 97.3 bits (241), Expect = 2e-22
 Identities = 39/318 (12%), Positives = 86/318 (27%), Gaps = 18/318 (5%)

Query: 321 TALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 380
             L +     ++   +  +     SL          I         +  ++   +     
Sbjct: 14  PQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYN 73

Query: 381 CSREEMISLF---AAEGNLPLHSAVHGGDF---KAVELCLKSGAKISTQQFDLSTPVHLA 434
            + +++ S       +  +    A   G       + L L S   +   Q +      LA
Sbjct: 74  RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 133

Query: 435 CSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLN-- 492
              G L ++  +  L P+E +  + + +         AA      V+  L +        
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATA 190

Query: 493 -VLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAE 551
            +  +   +    A  RG    +  L+     +   +I+        V           +
Sbjct: 191 MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK 250

Query: 552 EVAAVFL----GENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI--I 605
           E+   F           +     L+       L         + ++ LLS      +   
Sbjct: 251 EMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT 310

Query: 606 NESDGEGLTPLHIASKEG 623
               G+    L +A + G
Sbjct: 311 ATIPGDANELLRLALRLG 328

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 93.8 bits (232), Expect = 2e-21
 Identities = 36/326 (11%), Positives = 78/326 (23%), Gaps = 44/326 (13%)

Query: 179 ISTQQFDLSTPVHLACSQGALDIVRLM------FNLQPSEKLVCLNSTDAQKMTPLHCAA 232
           + T  +  +  + L  ++    + +L+      +N    +     +    +       AA
Sbjct: 39  LMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAA 98

Query: 233 M---FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT--------NGVNTRILN 281
           +       D +  L+     + V+  E      LAA  G                  ++ 
Sbjct: 99  ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ 158

Query: 282 NKKQAVLHLATELNKVPILLILLQYK-DMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
            +      LA E   + +L  L +        +   E+       A           L+ 
Sbjct: 159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 218

Query: 341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHS 400
                         Y      +           +    +             E +     
Sbjct: 219 --------CPVMLAYAEIHEFEYGEKYVNPFIARHVNRLK------------EMHDAFKL 258

Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           +   G F  V            Q F +   +     +  LD +R + ++   + L    +
Sbjct: 259 SNPDGVFDLVT------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLID 486
                   L  A           L+ 
Sbjct: 313 IPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 88.8 bits (219), Expect = 1e-19
 Identities = 38/319 (11%), Positives = 78/319 (24%), Gaps = 28/319 (8%)

Query: 300 LLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILV----------KDFGASLKRA 349
           L       + + ++         + +    + ++  ++L           K   +   + 
Sbjct: 27  LFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK 86

Query: 350 CSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKA 409
                     AA    S  ++           + +E++ +  AE       A   G    
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLL-----LTSDEIVKVIQAENYQAFRLAAENGHLHV 141

Query: 410 VELCLKSGAKISTQQFDL--STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMT 467
           +    +                   LA   G L ++  +  L P+E    + + +     
Sbjct: 142 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN--YYA 199

Query: 468 PLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW---------KTVLTLV 518
               A      +V+ +L+D    L   +  +        +                  L 
Sbjct: 200 FRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLS 259

Query: 519 RNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNES 578
                  L   +       ++ N      E   +     L    I   A           
Sbjct: 260 NPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE 319

Query: 579 PLHLAARYGRYNTVKKLLS 597
            L LA R G       LLS
Sbjct: 320 LLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.6 bits (208), Expect = 2e-18
 Identities = 39/370 (10%), Positives = 81/370 (21%), Gaps = 78/370 (21%)

Query: 97  MVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLF---DAEG 153
            +     SL          I         +  ++   +      + +++ S       + 
Sbjct: 31  FISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKS 90

Query: 154 NLPLHSAVHGGDF---KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQP 210
            +    A   G       + L L S   +   Q +      LA   G L ++  +  L P
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

Query: 211 SEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW 270
           +E +  + + +         AA      V+  L +                         
Sbjct: 151 TEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEA------------------- 188

Query: 271 KTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYD 330
                   I      A    A       ++  LL                 A      Y 
Sbjct: 189 -----TAMIQAENYYAFRWAAVGRGHHNVINFLLDC---------PVMLAYAEIHEFEYG 234

Query: 331 FDECARILV------KDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSRE 384
                  +       K+   + K +  +G + +   ++                      
Sbjct: 235 EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFY---------------- 278

Query: 385 EMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGA-----KISTQQFDLSTPVHLACSQGA 439
                        L           +   L           +T   D +  + LA   G 
Sbjct: 279 ---------MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 329

Query: 440 LDIVRLMFNL 449
                L+ ++
Sbjct: 330 QGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 78.4 bits (192), Expect = 2e-16
 Identities = 43/361 (11%), Positives = 89/361 (24%), Gaps = 64/361 (17%)

Query: 9   DNKNKSRLIPSS------------SGVNTRILNNKKQAVLHLATELNKVPILLILLQYKD 56
           +N  + RLIP              + ++   L+ K+   + L    N   +  +L  Y  
Sbjct: 11  ENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA 70

Query: 57  MI---------DILQGGEHGRTALHIAAIY---DFDECARILVSEQPECDWIMVKDFGAS 104
                      D  + G        +AAI       +   +L++                
Sbjct: 71  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS------------DEI 118

Query: 105 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGG 164
           +K   +  Y     AA+N     +    +          E++++  AE       A   G
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAP------TEIMAMIQAENYHAFRLAAENG 172

Query: 165 DFKAVELCLKSGAKI---STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD 221
               +    +          Q  +       A  +G  +++              L    
Sbjct: 173 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF------------LLDCP 220

Query: 222 AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILN 281
                       +    V  ++      L     E      L+   G +     +  +  
Sbjct: 221 VMLAYAEIHEFEYGEKYVNPFIARHVNRLK----EMHDAFKLSNPDGVFDLVTKSECLQG 276

Query: 282 NKKQAVLHLATELNKVPILLILLQY---KDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
                 L    +   +  +  LL     K +             L +A          +L
Sbjct: 277 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

Query: 339 V 339
           +
Sbjct: 337 L 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 75.7 bits (185), Expect = 2e-15
 Identities = 30/231 (12%), Positives = 61/231 (26%), Gaps = 11/231 (4%)

Query: 20  SSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 79
           +S    +++  +      LA E   + +L  L +      +         A  +AA    
Sbjct: 114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 173

Query: 80  DECARILVSEQPECDWIMVKDFG--ASLKRACSNGYYPIHD---AAKNASSKTMEVFLQF 134
                 L    P     M++     A    A   G++ + +         +       ++
Sbjct: 174 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEY 233

Query: 135 GESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 194
           GE               E +     +   G F  V            Q F +   +    
Sbjct: 234 GEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT------KSECLQGFYMLRNLIRRN 287

Query: 195 SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 245
            +  LD +R + ++   + L    +        L  A           L+ 
Sbjct: 288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 55.7 bits (133), Expect = 7e-09
 Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 5/133 (3%)

Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH---IKEFA 550
           ++  +  P L       W+ +     +   + L  ++ +  +H+ +          +   
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC 66

Query: 551 EEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDG 610
              A      N   L +  + K   +E    +AA  G  + +  L        I+     
Sbjct: 67  LYYAHYN--RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA 124

Query: 611 EGLTPLHIASKEG 623
           E      +A++ G
Sbjct: 125 ENYQAFRLAAENG 137

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.3 bits (233), Expect = 7e-22
 Identities = 47/271 (17%), Positives = 92/271 (33%), Gaps = 13/271 (4%)

Query: 358 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSG 417
           HD   +  S  +++       +    E+ + L A      L   +     +         
Sbjct: 8   HDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAF-----LQRLLFPEIQEMPTSLNNDS 62

Query: 418 AKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDR 477
           +  +++    +           L  V   F   P+ +L      D    TPLH       
Sbjct: 63  SNRNSEGGSSNQQQQHVSFDSLLQEVNDAF---PNTQLNLNIPVDEHGNTPLHWLTSIAN 119

Query: 478 CDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN----KANILLKDINRRN 533
            ++V++L+  G++    D    S L+ A          T           ++L+D   R 
Sbjct: 120 LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRT 179

Query: 534 ILHLLVLNGGGHIK-EFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTV 592
           ILH +++  G       A+    + +G  +      I    N  ES  +      + + +
Sbjct: 180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL 239

Query: 593 KKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           + L      + ++N  D  G T L+IA++ G
Sbjct: 240 ENLDLKWIIANMLNAQDSNGDTCLNIAARLG 270

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.6 bits (218), Expect = 6e-20
 Identities = 44/282 (15%), Positives = 81/282 (28%), Gaps = 30/282 (10%)

Query: 248 ADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYK 307
               V D E++  L     R  +         LNN            N+    +      
Sbjct: 26  PSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLL 85

Query: 308 DMIDILQGG----------EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPI 357
             ++               EHG T LH        E  + LV   G++     + G   +
Sbjct: 86  QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCL 144

Query: 358 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLK-- 415
             A K+ ++     F    + +       + L  +     LH  +            K  
Sbjct: 145 VKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMNRTILHHIIITSGMTGCSAAAKYY 200

Query: 416 -----------SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ 464
                          I +   +  +  +    +    I+  +        ++  N+ D+ 
Sbjct: 201 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML--NAQDSN 258

Query: 465 KMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 506
             T L+ AA      +V  L+D GAD  + +K    P+   A
Sbjct: 259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.2 bits (217), Expect = 9e-20
 Identities = 40/271 (14%), Positives = 82/271 (30%), Gaps = 32/271 (11%)

Query: 8   SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 67
            + +     + + S        +  Q   H++ +     +       +  ++I    EHG
Sbjct: 49  PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI-PVDEHG 107

Query: 68  RTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKT 127
            T LH        E  + LV              G++     + G   +  A K+ ++  
Sbjct: 108 NTPLHWLTSIANLELVKHLVKH------------GSNRLYGDNMGESCLVKAVKSVNNYD 155

Query: 128 MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLK------------- 174
              F    + +       + L D+     LH  +            K             
Sbjct: 156 SGTFEALLDYLYP----CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 211

Query: 175 SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMF 234
               I +   +  +  +    +    I+  +        ++  N+ D+   T L+ AA  
Sbjct: 212 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML--NAQDSNGDTCLNIAARL 269

Query: 235 DRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
               +V  L+D GAD  + +K    P+   A
Sbjct: 270 GNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.8 bits (216), Expect = 1e-19
 Identities = 43/331 (12%), Positives = 94/331 (28%), Gaps = 40/331 (12%)

Query: 289 HLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKR 348
            L ++    P+ ++      +++  +        L      +  E    L  D       
Sbjct: 9   DLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSE 68

Query: 349 ACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFK 408
             S+     H +  +   +  + F     ++    +E        GN PLH      + +
Sbjct: 69  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE-------HGNTPLHWLTSIANLE 121

Query: 409 AVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP 468
            V+  +K G+          + +  A            F         CL   D+   T 
Sbjct: 122 LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG-TFEALLDYLYPCLILEDSMNRTI 180

Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
           LH   +               D+ +                       + +    I    
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILM--------------------GWIVKKQNRPIQSGT 220

Query: 529 INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGR 588
             + +  +         I E  +    +            +N ++++ ++ L++AAR G 
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWII---------ANMLNAQDSNGDTCLNIAARLGN 271

Query: 589 YNTVKKLLSSERGSFIINESDGEGLTPLHIA 619
            + V  LL  + G+     ++  GL P+   
Sbjct: 272 ISIVDALL--DYGA-DPFIANKSGLRPVDFG 299

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 3e-20
 Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 42/231 (18%)

Query: 395 NLPLHSAVHGGDFKAV-ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           NL + +  + G  + + E  L   +  +    D  T +H ACS G  +IV  +  L    
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 454 KL----------------------------VCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 485
                                           +N+ +    TPLH AA  +R ++   L+
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 486 DEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH 545
           + GA+ +  D  + + +  AA++G  K +  L+  KA+  ++D      LHL        
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 183

Query: 546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLL 596
             +             L++ GA I ++N   ++PL +A   G    +K+++
Sbjct: 184 EAKL------------LVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.5 bits (187), Expect = 2e-16
 Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 27/231 (11%)

Query: 35  VLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECD 94
           V +LA       +   +L  K +    +  +  RTALH A      E    L+      +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLAT--RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 95  WIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGN 154
                            G+ P+H AA     + ++  L  G          ++  +  G 
Sbjct: 65  DK------------DDAGWSPLHIAASAGRDEIVKALLGKG--------AQVNAVNQNGC 104

Query: 155 LPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 214
            PLH A      +   + L+ GA    +    +T +H A ++G L ++ ++   +     
Sbjct: 105 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA---- 160

Query: 215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAA 265
              N  D +  TPLH A   +R +  + L+ +GA + + +KE+++PL +A 
Sbjct: 161 -STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 1e-14
 Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 38/222 (17%)

Query: 154 NLPLHSAVHGGDFKAV-ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 212
           NL + +  + G  + + E  L   +  +    D  T +H ACS G  +IV  +  L    
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 213 KL----------------------------VCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
                                           +N+ +    TPLH AA  +R ++   L+
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 245 DEGADLNVLDKEKRSPLLLAASRGGW------KTNGVNTRILNNKKQAVLHLATELNKVP 298
           + GA+ +  D  + + +  AA++G             +T I + +    LHLA +  +V 
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE 183

Query: 299 ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
              +L+       I    +  +T L +A         + +V+
Sbjct: 184 EAKLLVSQG--ASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 4e-12
 Identities = 36/170 (21%), Positives = 65/170 (38%), Gaps = 15/170 (8%)

Query: 469 LHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD 528
            + A      ++ + ++ + +     D++ R+ L  A S G  + V  L++    +  KD
Sbjct: 8   CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 67

Query: 529 INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGR 588
               + LH+    G   I +             L+  GA +N  N +  +PLH AA   R
Sbjct: 68  DAGWSPLHIAASAGRDEIVKA------------LLGKGAQVNAVNQNGCTPLHYAASKNR 115

Query: 589 YNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWC 638
           +     LL  E G+   +  D    T +H A+ +G    + I        
Sbjct: 116 HEIAVMLL--EGGA-NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST 162

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 6e-05
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 580 LHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWCS 639
           +   A  G+   +K+ + +     +   +D +  T LH A   G    V       V  +
Sbjct: 7   VCNLAYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 640 YC 641
             
Sbjct: 65  DK 66

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.7 bits (200), Expect = 7e-18
 Identities = 50/242 (20%), Positives = 80/242 (33%), Gaps = 12/242 (4%)

Query: 288 LHLATELNKVPILLILLQYK-DMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASL 346
           LHLA      P L  LL +      +    + G+TALH+AAI   +      +   GA +
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-EASTVEKLYAAGAGV 71

Query: 347 KRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGN------LPLHS 400
             A   G+  +H A +  +     V LQ   S      +     + +             
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS 460
           +    + +          ++  + +D  TP+H+A      +    M  L           
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE----MVRLLRDAGADLNKP 187

Query: 461 TDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN 520
                 TPLH A       V++ L+  GAD        R+PL  A  R        L  +
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 521 KA 522
            A
Sbjct: 248 GA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.9 bits (185), Expect = 6e-16
 Identities = 48/240 (20%), Positives = 74/240 (30%), Gaps = 23/240 (9%)

Query: 36  LHLATELNKVPILLILLQYK-DMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECD 94
           LHLA      P L  LL +      +    + G+TALH+AAI         L +      
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 95  WIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREE--MISLFDAE 152
                            G+  +H A +  +     V LQ   S      +  +    D  
Sbjct: 73  VA------------ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 153 GNLPLHSAVH----GGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 208
            +     A        + +          ++  + +D  TP+H+A      +    M  L
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE----MVRL 176

Query: 209 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
                            TPLH A       V++ L+  GAD        R+PL  A  R 
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 1e-14
 Identities = 45/273 (16%), Positives = 77/273 (28%), Gaps = 31/273 (11%)

Query: 150 DAEGNLPLHSAVHGGDFKAVELCLKSGAK---ISTQQFDLSTPVHLACSQGALDIVRLMF 206
             +G+  LH AV       ++  L   A    +  Q     T +HLA   G         
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-----EAST 60

Query: 207 NLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAAS 266
             +       +   +    T LH A           L+           +      L  S
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT----YLTQS 116

Query: 267 RGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIA 326
           +            ++++                          + +      G T LH+A
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR-----------LQLEAENYDGHTPLHVA 165

Query: 327 AIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEM 386
            I+   E  R+L        K   + G  P+H A +  ++  +E+ L+ G          
Sbjct: 166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-------- 217

Query: 387 ISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAK 419
            +     G  PL SA+   +     L    GA 
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 4e-14
 Identities = 44/255 (17%), Positives = 77/255 (30%), Gaps = 25/255 (9%)

Query: 352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVE 411
           +G   +H A  +     ++  L F         E + L    G   LH A   G+   VE
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGH-----EYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 412 LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNS---------TD 462
               +GA +   +    T +HLAC   A     ++   +PS      ++          D
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 463 AQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKA 522
                    +      +      D    L   + +  +PL +A      + V  L    A
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 523 NILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHL 582
           ++   +         L       ++  A  V      E L+  GA    +     +PL  
Sbjct: 183 DLNKPEPTCGRTPLHLA------VEAQAASVL-----ELLLKAGADPTARMYGGRTPLGS 231

Query: 583 AARYGRYNTVKKLLS 597
           A         + L +
Sbjct: 232 ALLRPNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.4 bits (163), Expect = 5e-13
 Identities = 36/237 (15%), Positives = 62/237 (26%), Gaps = 14/237 (5%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAK---ISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
           +G+  LH AV       ++  L   A    +  Q     T +HLA   G           
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG-----EASTVE 62

Query: 450 QPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 509
           +       +   +    T LH A           L+           +         +  
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 510 GWKTVLTL---VRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG 566
                  +      +     +D + R  L     +G   +        A  +        
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 567 ACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
                +     +PLHLA      + ++ LL  + G+         G TPL  A    
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLL--KAGADP-TARMYGGRTPLGSALLRP 236

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 6e-10
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 6/188 (3%)

Query: 458 LNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD---LNVLDKEKRSPLLLAASRGGWKTV 514
                    T LH A +      + +L+   A    L++ +   ++ L LAA  G   TV
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 515 LTLVRNKANILLKDINRRNILHLLVLNGGGHI-KEFAEEVAAVFLGENLINLGACINLKN 573
             L    A +L+ +      LHL              +   +     +   L    +   
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 574 NSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQV 633
           +++ +P  + ++    N  +      R    +   + +G TPLH+A        V + + 
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQ--LEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 634 TYVWCSYC 641
                +  
Sbjct: 180 AGADLNKP 187

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (197), Expect = 9e-18
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 20/232 (8%)

Query: 225 MTPLHCAAMFDRCDVVQYLIDE----GADLNVLDKEKRSPLLLAASR--------GGWKT 272
            TPLH A +      V  L++     G +L++ +  +++PL LA                
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 273 NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD 332
                   + +  A L            L+       +D+      G TALH+A   +  
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 333 ECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAA 392
           E  ++L++           +G  P+  A +N S   +++ LQ G ++             
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS------- 176

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVR 444
            G+  LHSA   G    V   ++SGA  S +     TP+ +A S+  +DI+R
Sbjct: 177 -GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 1e-13
 Identities = 47/229 (20%), Positives = 70/229 (30%), Gaps = 11/229 (4%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDF---GASLKRACSNGYYPIHDAAKNASSKTMEVFL 373
           E G T LHIA +         LV  F   G  L    +    P+H A        + + +
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 374 QFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHL 433
             G S         +          H A        +   L S A  +      +     
Sbjct: 61  TAGASPMALDRHGQTAA--------HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 112

Query: 434 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 493
           A         +    L                 +PL  A   +   +VQ L+  GA++N 
Sbjct: 113 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 172

Query: 494 LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNG 542
                 S L  A+ RG    V TLVR+ A+  LK+ +    L +     
Sbjct: 173 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 4e-12
 Identities = 41/234 (17%), Positives = 74/234 (31%), Gaps = 43/234 (18%)

Query: 65  EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKN-- 122
           E G T LHIA +         LV+   +         G  L    +    P+H A     
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQG--------GRELDIYNNLRQTPLHLAVITTL 52

Query: 123 ---------------------------ASSKTMEVFLQFGESIGCSREEMISLFDAEGNL 155
                                      A        L+            +   + +G  
Sbjct: 53  PSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 112

Query: 156 PLHSAVHGGDFKAVE-LCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKL 214
            LH AV+    + V+ L  +     +       +P+  A    +L +V+L+     +   
Sbjct: 113 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 172

Query: 215 VCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG 268
              +       + LH A+      +V+ L+  GAD ++ +    +PL++A SR 
Sbjct: 173 QMYS-----GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 30/221 (13%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
           TP+H+A  QG L  V  + NL   +    L+  +  + TPLH A +     VV+ L+  G
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQ-QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-------------------- 528
           A    LD+  ++   LA        +  L+ + A   L                      
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 529 ------INRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHL 582
                 + R   +  + +  G      A E  ++ + + L+  GA +N +  S  S LH 
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 183

Query: 583 AARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG 623
           A+  G    V+ L+    G+   +  +    TPL +A    
Sbjct: 184 ASGRGLLPLVRTLV--RSGA-DSSLKNCHNDTPLMVARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 19/138 (13%)

Query: 66  HGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASS 125
            G TALH+A   +  E  ++L+    + D + +K   + L  A  N    +         
Sbjct: 109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ------- 161

Query: 126 KTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFD 185
                       +       ++     G+  LHSA   G    V   ++SGA  S +   
Sbjct: 162 ------------LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH 209

Query: 186 LSTPVHLACSQGALDIVR 203
             TP+ +A S+  +DI+R
Sbjct: 210 NDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 577 ESPLHLAARYGRYNTVKKLLS-SERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTY 635
           ++PLH+A   G    V +L++  ++G   ++  +    TPLH+A        V +     
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 636 VWCSYC 641
                 
Sbjct: 64  ASPMAL 69

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.5 bits (197), Expect = 2e-17
 Identities = 52/300 (17%), Positives = 91/300 (30%), Gaps = 34/300 (11%)

Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
             LH  A      + + +  E  ++ +  +  R+ L   AS              N+  +
Sbjct: 4   IKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIAS--------------NSSAE 47

Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGAS 345
               L     K  I           D+        T L +A +         L+K     
Sbjct: 48  KSEDLIVHEAKECI-------AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 100

Query: 346 LKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMIS------LFAAEGNLPLH 399
                S        AA       M   L   +  G   E   +      + A        
Sbjct: 101 TIYNKSERSALHQAAANR-DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 159

Query: 400 SAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLN 459
           ++      K  ++     A+  ++++   T +H A     + IV+ +   + S      +
Sbjct: 160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS----NKD 215

Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVR 519
             D    TP+  AA   R +VV YLI +GA +  +D    +   LA +      V    R
Sbjct: 216 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 39/256 (15%), Positives = 84/256 (32%), Gaps = 17/256 (6%)

Query: 19  SSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQG------GEHGRTALH 72
           +   VN     + +   LH     +       L+ ++    I  G           T L 
Sbjct: 21  TRESVNIIDPRHNRTV-LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 79

Query: 73  IAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFL 132
           +A +         L+    +       +  A   +A +N  + +     N++    ++  
Sbjct: 80  LAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAANRDFGMMVYMLNSTKLKGDIEE 138

Query: 133 QFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHL 192
                   +    + +          ++      K  ++     A+  ++++   T +H 
Sbjct: 139 LD-----RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 193

Query: 193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV 252
           A     + IV+ +   + S      +  D    TP+  AA   R +VV YLI +GA +  
Sbjct: 194 AAQVSNMPIVKYLVGEKGS----NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 249

Query: 253 LDKEKRSPLLLAASRG 268
           +D    +   LA +  
Sbjct: 250 VDATDHTARQLAQANN 265

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.8 bits (177), Expect = 9e-15
 Identities = 42/278 (15%), Positives = 89/278 (32%), Gaps = 44/278 (15%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           E  + LH+    G +   E   +    I   + +  T +H   S  + +    +   +  
Sbjct: 1   ESPIKLHTE-AAGSYAITEPITRESVNIIDPRHN-RTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 453 EKL---VCLNSTDAQKMTPLHCAAM---------------------------------FD 476
           E +     +N+ D  + TPL  A +                                   
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 477 RCDVVQYLIDEGADLNVLDKEKRS---PLLLAASRGGWKTVLTLVRNKANILLKDINRRN 533
              ++ Y+++       +++  R+    L++ A   G   V +           D +   
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 178

Query: 534 ILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVK 593
                   G   +   A+      +   +   G+  + ++   ++P+ LAA+ GR   V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 594 KLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF 631
            L+  ++G+  +   D    T   +A     H  V IF
Sbjct: 239 YLI--QQGAS-VEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.5 bits (158), Expect = 3e-12
 Identities = 49/279 (17%), Positives = 93/279 (33%), Gaps = 27/279 (9%)

Query: 288 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK------- 340
           + L TE      +   +  +  ++I+    H RT LH  A     E +  L+        
Sbjct: 4   IKLHTEAAGSYAITEPITRES-VNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHS 400
             GA +     +   P+  A      + +   ++ G       +   S          H 
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL--------HQ 113

Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLST---PVHLACSQGALDIVRLMFNLQPSEKLVC 457
           A    DF  +   L S       +         + +       D V     L      V 
Sbjct: 114 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD 173

Query: 458 ------LNSTDAQKMTPLHCAAM-FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGG 510
                  +S   +  T LH AA   +   V   + ++G++ +  D++ ++P++LAA  G 
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 511 WKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 549
            + V+ L++  A++   D        L   N   +I + 
Sbjct: 234 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 272

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 7/162 (4%)

Query: 43  NKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFG 102
               +++ +L    +   ++  +       +   ++             E    +  D  
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 103 ASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVH 162
           A        G   +H AA+ ++   ++  +    S    +       D +G  P+  A  
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-------DEDGKTPIMLAAQ 230

Query: 163 GGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 204
            G  + V   ++ GA +        T   LA +    +IV +
Sbjct: 231 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 272

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 6/87 (6%)

Query: 560 ENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFI-----INESDGEGLT 614
           E +      I      N + LH  A        + L+  E    I     +N  D +  T
Sbjct: 18  EPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 76

Query: 615 PLHIASKEGFHYSVSIFQVTYVWCSYC 641
           PL +A        V+         +  
Sbjct: 77  PLMLAVLARRRRLVAYLMKAGADPTIY 103

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 2/80 (2%)

Query: 7   QSDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEH 66
           Q  N    + +    G N    +   +  + LA +  ++ +++ L+Q      +      
Sbjct: 196 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG--ASVEAVDAT 253

Query: 67  GRTALHIAAIYDFDECARIL 86
             TA  +A   +      I 
Sbjct: 254 DHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 19/122 (15%)

Query: 53  QYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNG 112
            Y            GRTALH AA                     +V + G++  +   +G
Sbjct: 173 DYDGAARKDSEKYKGRTALHYAAQVSNMPIV-----------KYLVGEKGSNKDKQDEDG 221

Query: 113 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELC 172
             PI  AA+    + +   +Q G S+           DA  +     A        V++ 
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASV--------EAVDATDHTARQLAQANNHHNIVDIF 273

Query: 173 LK 174
            +
Sbjct: 274 DR 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.4 bits (181), Expect = 3e-15
 Identities = 49/282 (17%), Positives = 92/282 (32%), Gaps = 22/282 (7%)

Query: 16  LIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAA 75
           L P         +     AV   A        +L LL+     DI      G TALH A 
Sbjct: 24  LEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQAC 81

Query: 76  IYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPI--------HDAAKNASSKT 127
           I D  +  + LV      +    + +      A                H  A N+   T
Sbjct: 82  IDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141

Query: 128 MEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLS 187
                +  E++    +  ++    +               A +                 
Sbjct: 142 PLDIAEE-EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG 200

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
           T +H+A ++G  ++++L+   +       +N  D    TPLH AA + + +  + L++  
Sbjct: 201 TALHVAAAKGYTEVLKLLIQAR-----YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 248 ADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLH 289
            D+  ++K  ++   +A        + +       KKQ +LH
Sbjct: 256 CDMEAVNKVGQTAFDVADE------DILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 71.3 bits (173), Expect = 4e-14
 Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 37/256 (14%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           +      +A   GD + V   L+ GA I+    D  T +H AC    +D+V+ +     +
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADL--------------------- 491
                                      + Q       +                      
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 492 -NVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFA 550
            N    +  +                L     N +    +    LH+    G   + +  
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL- 217

Query: 551 EEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDG 610
                      LI     +N+K+    +PLH AA +G+    + L+  E     +   + 
Sbjct: 218 -----------LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV--ENLCD-MEAVNK 263

Query: 611 EGLTPLHIASKEGFHY 626
            G T   +A ++   Y
Sbjct: 264 VGQTAFDVADEDILGY 279

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.0 bits (167), Expect = 2e-13
 Identities = 40/261 (15%), Positives = 85/261 (32%), Gaps = 22/261 (8%)

Query: 318 HGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGE 377
                   A      E    L+ + GA +  A  +G   +H A  + +   ++  ++ G 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 378 SIGCSREEMISLFAAEGNLPLHSAV--------------HGGDFKAVELCLKSGAKISTQ 423
           +I     E      A  +                       GD        ++  ++   
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 424 QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQY 483
           + +       A  +    I+        +   +          T LH AA     +V++ 
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 484 LIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGG 543
           LI    D+N+ D +  +PL  AA  G  +    LV N  ++   +   +    +   +  
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

Query: 544 GHIKEFAEEVAAVFLGENLIN 564
           G+++E  ++       +NL++
Sbjct: 278 GYLEELQKK-------QNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 42/240 (17%), Positives = 82/240 (34%), Gaps = 31/240 (12%)

Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
           +      +A   GD + V   L+ GA I+    D  T +H AC    +D+V+ +     +
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 212 EKLVCLN----------------------------STDAQKMTPLHCAAMFDRCDVVQYL 243
                                              + +++  TPL  A      +++Q  
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 244 IDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLIL 303
           ++         +++   ++L  +R    +  +N           LH+A       +L +L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 304 LQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKN 363
              +   D+      G T LH AA +  +E  RILV +    ++     G      A ++
Sbjct: 219 --IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-ENLCDMEAVNKVGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 576 NESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTY 635
           + +    A   G    V +LL  ERG+ I N ++ +GLT LH A  +     V       
Sbjct: 40  DGAVFLAACSSGDTEEVLRLL--ERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 636 VWCSYC 641
              +  
Sbjct: 97  ANINQP 102

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 1e-13
 Identities = 42/218 (19%), Positives = 69/218 (31%), Gaps = 9/218 (4%)

Query: 319 GRTALHIAAIYDFDECARILVKDF---GASLKRACSNGYYPIHDAAKNASSKTMEVFLQF 375
           G + LH+A I++       +++      A L    +    P+H A      +  E  L  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 376 GESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLAC 435
           G           +           ++V           L S   +    ++  T +HLA 
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS--ILKATNYNGHTCLHLAS 119

Query: 436 SQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD 495
             G L IV L+ +                  T LH A      D+V  L+  GAD+N + 
Sbjct: 120 IHGYLGIVELLVS----LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 175

Query: 496 KEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRN 533
            +  SP  L   R   +    L +     L       +
Sbjct: 176 YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 213

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 2e-11
 Identities = 42/202 (20%), Positives = 65/202 (32%), Gaps = 14/202 (6%)

Query: 67  GRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSK 126
           G + LH+A I++       ++          VK   A L    +    P+H A      +
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIR--------QVKGDLAFLNFQNNLQQTPLHLAVITNQPE 53

Query: 127 TMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL 186
             E  L  G           +           ++V           L S   +    ++ 
Sbjct: 54  IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS--ILKATNYNG 111

Query: 187 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE 246
            T +HLA   G L IV L+ +                  T LH A      D+V  L+  
Sbjct: 112 HTCLHLASIHGYLGIVELLVS----LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 167

Query: 247 GADLNVLDKEKRSPLLLAASRG 268
           GAD+N +  +  SP  L   R 
Sbjct: 168 GADVNRVTYQGYSPYQLTWGRP 189

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 22/226 (9%)

Query: 36  LHLATELNKVPILLILLQY--KDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPEC 93
           LHLA    +  + + +++    D+  +       +T LH+A I +  E A  L+    + 
Sbjct: 6   LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 65

Query: 94  DWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEG 153
           +    +                +    ++ ++                   ++   +  G
Sbjct: 66  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTT--------------PHLHSILKATNYNG 111

Query: 154 NLPLHSAVHGGDFKAVELCLKSGAKI-STQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 212
           +  LH A   G    VEL +  GA + + +  +  T +HLA      D+V L+       
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 171

Query: 213 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 258
                N    Q  +P           + Q L     +   +  E  
Sbjct: 172 -----NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 2e-10
 Identities = 35/229 (15%), Positives = 67/229 (29%), Gaps = 35/229 (15%)

Query: 225 MTPLHCAAMFDRCD----VVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRIL 280
            + LH A + +       V++ +  + A LN  +  +++PL LA      +         
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA- 61

Query: 281 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVK 340
                                      ++ D                             
Sbjct: 62  -----------------------GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 98

Query: 341 DFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHS 400
              + LK    NG+  +H A+ +     +E+ +  G  +              G   LH 
Sbjct: 99  HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN-------GRTALHL 151

Query: 401 AVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNL 449
           AV   +   V L LK GA ++   +   +P  L   + +  I + +  L
Sbjct: 152 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 1e-08
 Identities = 27/209 (12%), Positives = 53/209 (25%), Gaps = 14/209 (6%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLK----SGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 448
           +G+  LH A+   +       ++      A ++ Q     TP+HLA      +I   +  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 449 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 508
                +L          +                        +           L  AS 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 509 GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGAC 568
            G+  ++ L+ +    +           L +     +                L+  GA 
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV----------SLLLKCGAD 170

Query: 569 INLKNNSNESPLHLAARYGRYNTVKKLLS 597
           +N       SP  L          ++L  
Sbjct: 171 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 7e-07
 Identities = 27/201 (13%), Positives = 53/201 (26%), Gaps = 14/201 (6%)

Query: 152 EGNLPLHSAVHGGDFKAVELCLK----SGAKISTQQFDLSTPVHLACSQGALDIVRLMFN 207
           +G+  LH A+   +       ++      A ++ Q     TP+HLA      +I   +  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 208 LQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR 267
                +L          +                        +           L  AS 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 268 GG--------WKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHG 319
            G                       +  LHLA +L    ++ +LL+     D+ +    G
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG--ADVNRVTYQG 178

Query: 320 RTALHIAAIYDFDECARILVK 340
            +   +          + L +
Sbjct: 179 YSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 9/195 (4%)

Query: 429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
           + +HLA       +   +      +    LN  +  + TPLH A + ++ ++ + L+  G
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDL-AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 489 ADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKE 548
            D  + D    +PL LA  +G   +V  L ++     L  I +    +         I  
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 549 FAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINES 608
           +   V  +      +N     N       + LHLA      + V  LL        +   
Sbjct: 123 YLGIVELLVSLGADVNAQEPCN-----GRTALHLAVDLQNPDLVSLLLKCGADVNRVTY- 176

Query: 609 DGEGLTPLHIASKEG 623
             +G +P  +     
Sbjct: 177 --QGYSPYQLTWGRP 189

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 577 ESPLHLAARYGRYNTVKKLLSS--ERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVT 634
           +S LHLA  +       +++       +F+ N  +    TPLH+A               
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 635 YVWCSYC 641
                  
Sbjct: 62  GCDPELR 68

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 67.1 bits (162), Expect = 3e-13
 Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 23/231 (9%)

Query: 365 SSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 424
           +++ +   L  G  +  + ++        G   LH A       A +  L +GA  ++Q 
Sbjct: 1   TAQVISDLLAQGAELNATMDK-------TGETSLHLAARFARADAAKRLLDAGADANSQD 53

Query: 425 FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
               TP+H A +  A+ + +++   +       LN+      TPL  AA      +V+ L
Sbjct: 54  NTGRTPLHAAVAADAMGVFQILLRNRA----TNLNARMHDGTTPLILAARLAIEGMVEDL 109

Query: 485 IDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGG 544
           I   AD+N  D   ++ L  AA+    + V  L+ + AN   +D      L L    G  
Sbjct: 110 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY 169

Query: 545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL 595
              +             L++  A   + ++ +  P  +A+    ++ V+ L
Sbjct: 170 EASKA------------LLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.6 bits (158), Expect = 9e-13
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 13/193 (6%)

Query: 317 EHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
           + G T+LH+AA +   + A+ L+     +  +  +         A +A      +     
Sbjct: 21  KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA 80

Query: 377 ESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACS 436
            ++     +  +            A        VE  + + A I+       T +H A +
Sbjct: 81  TNLNARMHDGTTPL--------ILAARLAIEGMVEDLITADADINAADNSGKTALHWAAA 132

Query: 437 QGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK 496
               + V ++            ++ D +  TPL  AA     +  + L+D  A+  + D 
Sbjct: 133 VNNTEAVNILLMHHA-----NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDH 187

Query: 497 EKRSPLLLAASRG 509
             R P  +A+ R 
Sbjct: 188 MDRLPRDVASERL 200

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.9 bits (151), Expect = 6e-12
 Identities = 31/204 (15%), Positives = 65/204 (31%), Gaps = 24/204 (11%)

Query: 65  EHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNAS 124
           + G T+LH+AA +   + A+ L+    + +               ++         +N +
Sbjct: 21  KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA 80

Query: 125 SKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQF 184
           +            +  +    I                       E  + + A I+    
Sbjct: 81  TNLNARMHDGTTPLILAARLAIEGMV-------------------EDLITADADINAADN 121

Query: 185 DLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI 244
              T +H A +    + V ++            ++ D +  TPL  AA     +  + L+
Sbjct: 122 SGKTALHWAAAVNNTEAVNILLMHHA-----NRDAQDDKDETPLFLAAREGSYEASKALL 176

Query: 245 DEGADLNVLDKEKRSPLLLAASRG 268
           D  A+  + D   R P  +A+ R 
Sbjct: 177 DNFANREITDHMDRLPRDVASERL 200

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 43/221 (19%), Positives = 76/221 (34%), Gaps = 19/221 (8%)

Query: 124 SSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
           +++ +   L  G  +  +        D  G   LH A       A +  L +GA  ++Q 
Sbjct: 1   TAQVISDLLAQGAELNATM-------DKTGETSLHLAARFARADAAKRLLDAGADANSQD 53

Query: 184 FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 243
               TP+H A +  A+ + +++   +       LN+      TPL  AA      +V+ L
Sbjct: 54  NTGRTPLHAAVAADAMGVFQILLRNRA----TNLNARMHDGTTPLILAARLAIEGMVEDL 109

Query: 244 IDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVP----- 298
           I   AD+N  D   ++ L  AA+    +   +      N+        T L         
Sbjct: 110 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY 169

Query: 299 -ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARIL 338
                LL      +        R    +A+     +  R+L
Sbjct: 170 EASKALLDNF--ANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 20/219 (9%)

Query: 408 KAVELCLKSGAKI-STQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKM 466
           + +   L  GA++ +T      T +HLA      D  + + +          +  +  + 
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGA----DANSQDNTGRT 58

Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
                 A          L +   +LN    +  +PL+LAA       V  L+   A+I  
Sbjct: 59  PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
            D + +  LH                          +   A  + +++ +E+PL LAAR 
Sbjct: 119 ADNSGKTALHWAAAVNNTEAVNIL------------LMHHANRDAQDDKDETPLFLAARE 166

Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFH 625
           G Y   K LL  +  +     +D     P  +AS+   H
Sbjct: 167 GSYEASKALL--DNFANR-EITDHMDRLPRDVASERLHH 202

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 50/232 (21%), Positives = 74/232 (31%), Gaps = 47/232 (20%)

Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTR 278
           + D    T LH AA F R D  + L+D GAD N  D   R+PL  A +        +  R
Sbjct: 18  TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLR 77

Query: 279 ILNNKKQAVLHLATELNKVPILLILLQYKDMI-----DILQGGEHGRTALHIAAIYDFDE 333
                  A +H  T    +   L +    + +     DI      G+TALH AA  +  E
Sbjct: 78  NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTE 137

Query: 334 CARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAE 393
                                +  +  A++   +T                         
Sbjct: 138 A--------------VNILLMHHANRDAQDDKDETP------------------------ 159

Query: 394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
               L  A   G ++A +  L + A           P  +A  +   DIVRL
Sbjct: 160 ----LFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRL 207

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 1e-12
 Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 14/229 (6%)

Query: 395 NLPLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 453
           N PLH A    +F  V+  L S  + +  +  D   P+H + S  A +I   + +   + 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 454 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 513
            L             + C+          Y      DLN +  +  + L LA  +  ++ 
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 514 VLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKN 573
              L+ N A++ +KD   +  LH     G   + E                  + +N ++
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL-----------LCGLGKSAVNWQD 169

Query: 574 NSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKE 622
               +PL  A   G  +    L+         +  D +G     +A  E
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 3e-12
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 21/233 (9%)

Query: 36  LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDW 95
           LH A   N+   +  LL  K    +LQ  + GR  LH +  +   E    L+S+    + 
Sbjct: 4   LHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 96  IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNL 155
               D         +     +                +            +     E + 
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
            L               +++GA +  +      P+H A S G+L ++ L+  L       
Sbjct: 123 FL---------------IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK----S 163

Query: 216 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASR 267
            +N  D Q  TPL  A      D    L+++ GA+ +++D +      +A + 
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 9e-12
 Identities = 46/267 (17%), Positives = 80/267 (29%), Gaps = 42/267 (15%)

Query: 226 TPLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
            PLH A M +    VQ L+    + L   D++ R PL  + S    +             
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS------ 55

Query: 285 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGA 344
                               + +++       + G T  HIA      E  + L      
Sbjct: 56  --------------------KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 95

Query: 345 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHG 404
                 +N        A       +  FL    +    +++          +PLH A   
Sbjct: 96  PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF-------NQIPLHRAASV 148

Query: 405 GDFKAVELCLKSGAK-ISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDA 463
           G  K +EL    G   ++ Q     TP+  A ++G  D   L+     +E     +  D 
Sbjct: 149 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVDN 204

Query: 464 QKMTPLHCAAMFDRCDVVQYLIDEGAD 490
           +       A       V ++ ++   D
Sbjct: 205 KGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 3e-11
 Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 38/234 (16%)

Query: 321 TALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 380
             LH A + +     + L+    + L +   +G  P+H +    + +     L   E++ 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 381 CSREEMISLFA------------------------------AEGNLPLHSAVHGGDFKAV 410
                  S +                                +G   LH AV    F+  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 411 ELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLH 470
           +  +++GA +  +      P+H A S G+L ++ L+  L        +N  D Q  TPL 
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK----SAVNWQDKQGWTPLF 177

Query: 471 CAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKAN 523
            A      D    L+++ GA+ +++D +      +A +    +     + N  +
Sbjct: 178 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 8e-11
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 11/230 (4%)

Query: 154 NLPLHSAVHGGDFKAVELCLKS-GAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE 212
           N PLH A    +F  V+  L S  + +  +  D   P+H + S  A +I   + +   + 
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 213 KLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT 272
            L             + C+          Y      DLN +  +  + L LA  +  ++ 
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 273 N------GVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIA 326
           +      G + RI +   Q  LH A  +  + ++ +L        +    + G T L  A
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL-CGLGKSAVNWQDKQGWTPLFHA 179

Query: 327 AIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
                 + A +LV+ +GA      + G      A      +  + FL   
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNV 226

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 5e-08
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 579 PLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVTYVWC 638
           PLH A     +  V++LL       ++ + D +G  PLH +     H   S         
Sbjct: 3   PLHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 639 SYC 641
           +  
Sbjct: 61  NLD 63

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 1e-07
 Identities = 31/153 (20%), Positives = 48/153 (31%), Gaps = 21/153 (13%)

Query: 460 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL------DKEKRSPLLLAA---SRGG 510
           +  A K+  L  A        +     +G DL          +   + L LA     R  
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 511 WKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACIN 570
              V  LV+N  N+  +       LH   L       +              +   A I 
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL------------LRGKASIE 108

Query: 571 LKNNSNESPLHLAARYGRYNTVKKLLSSERGSF 603
           + N S E+PL +A R    +  + L  +  G F
Sbjct: 109 IANESGETPLDIAKRLKHEHCEELLTQALSGRF 141

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 9/144 (6%)

Query: 110 SNGYYPIHDAAKNASSKTMEVFLQ-FGESIGCSREEMISLFDAEGNLPLHSAV---HGGD 165
           ++    +H   +   ++ +   LQ + + +  + +  ++         LH AV       
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 166 FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKM 225
              V+  +++   +  Q    ST +H  C     + ++L+   +       +   +    
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA-----SIEIANESGE 115

Query: 226 TPLHCAAMFDRCDVVQYLIDEGAD 249
           TPL  A         + L    + 
Sbjct: 116 TPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 392 AEGNLPLHS---AVHGGDFKAVELCLKSGAKISTQ------QFDLSTPVHLAC---SQGA 439
           A+    LHS   AV   D   +      G  ++ +           T +HLA     + +
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 440 LDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKR 499
           L IV  +           L+    +  T LH   + D  + ++ L+   A + + ++   
Sbjct: 61  LHIVDFLVQNS-----GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGE 115

Query: 500 SPLLLAASRGGWKTVLTLVRNKANILLKDIN 530
           +PL +A           L +  +      ++
Sbjct: 116 TPLDIAKRLKHEHCEELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 9/144 (6%)

Query: 351 SNGYYPIHDAAKNASSKTMEVFLQ-FGESIGCSREEMISLFAAEGNLPLHSAV---HGGD 406
           ++    +H   +   ++ +   LQ + + +  + +  ++         LH AV       
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 407 FKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKM 466
              V+  +++   +  Q    ST +H  C     + ++L+   +       +   +    
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA-----SIEIANESGE 115

Query: 467 TPLHCAAMFDRCDVVQYLIDEGAD 490
           TPL  A         + L    + 
Sbjct: 116 TPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 14/150 (9%)

Query: 281 NNKKQAVLHLATELNKVPILLILLQY----KDMIDILQGGEHGRTALHIAAIYDFDECAR 336
              K   L  A +   +  LL          + I +  G E   TALH+A          
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 337 I--LVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEG 394
           I   +     +L +    G   +H      +++ +++ L+            I +    G
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA--------SIEIANESG 114

Query: 395 NLPLHSAVHGGDFKAVELCLKSGAKISTQQ 424
             PL  A         EL  ++ +      
Sbjct: 115 ETPLDIAKRLKHEHCEELLTQALSGRFNSH 144

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 21/159 (13%)

Query: 29  NNKKQAVLHLATELNKVPILLILLQY----KDMIDILQGGEHGRTALHIAAIYDFDECAR 84
              K   L  A +   +  LL          + I +  G E   TALH+A          
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 85  ILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREE 144
           I+           +     +L +    G   +H      +++ +++ L+           
Sbjct: 63  IV---------DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA-------- 105

Query: 145 MISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ 183
            I + +  G  PL  A         EL  ++ +      
Sbjct: 106 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 144

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 30/152 (19%), Positives = 46/152 (30%), Gaps = 18/152 (11%)

Query: 219 STDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVL------DKEKRSPLLLAASRGG--- 269
           +  A K+  L  A        +     +G DL          +   + L LA        
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 270 ------WKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTAL 323
                    N  N      K    LH     +    L +LL+ K  I+I    E G T L
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN--ESGETPL 118

Query: 324 HIAAIYDFDECARILVKDFGASLKRACSNGYY 355
            IA     + C  +L +   +    +  +  Y
Sbjct: 119 DIAKRLKHEHCEELLTQ-ALSGRFNSHVHVEY 149

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 21/152 (13%)

Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
             L  AA     + +  L+    ++N  +   R+ L +            L+R     L 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLG-------------------- 566
                  I           ++   E  A V + +N  NL                     
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 567 -ACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
            + +  +N+  ++   LA  YGR   V  + +
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 6e-06
 Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 14/168 (8%)

Query: 321 TALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 380
             L  AA     E    L+     ++      G   +           M++         
Sbjct: 3   NELASAAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQV---------MKLGNPEIARRL 52

Query: 381 CSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 440
             R     L    G   +H A   G    ++  L+  A ++ +  + + P+HLA  +G L
Sbjct: 53  LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 112

Query: 441 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 488
            +V  +           +   + +  T    A ++ R +VV  +   G
Sbjct: 113 RVVEFLVKHTA----SNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 25/179 (13%)

Query: 69  TALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTM 128
             L  AA     E    L+                ++      G   +           M
Sbjct: 3   NELASAAARGDLEQLTSLLQN------------NVNVNAQNGFGRTALQV---------M 41

Query: 129 EVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLST 188
           ++           R     L D  G   +H A   G    ++  L+  A ++ +  + + 
Sbjct: 42  KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 101

Query: 189 PVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
           P+HLA  +G L +V  +           +   + +  T    A ++ R +VV  +   G
Sbjct: 102 PLHLAAKEGHLRVVEFLVKHTA----SNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 22/154 (14%), Positives = 45/154 (29%), Gaps = 3/154 (1%)

Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
             L  AA     + +  L+    ++N  +   R+ L +           +  R  N   +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 286 AVLHLATELNKVP---ILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDF 342
                A   +      +  +    +   D+      G   LH+AA          LVK  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 343 GASLKRACSNGYYPIHDAAKNASSKTMEVFLQFG 376
            +++      G      A     ++ + +    G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 6/157 (3%)

Query: 393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 452
           +    L  A   G    V + + +GA  +T     S     A                  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYG------HFSTTEVLL 54

Query: 453 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 512
              V  ++      TPLH AA     ++V+ L+  GAD+N  D  K + L  A      +
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 513 TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEF 549
            V  L++  A++  +    +    + + NG   + E 
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 16/166 (9%)

Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
             L  AA   + D V+ L+  GA                    G   +    +       
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-------------TDWLGTSPLHLAAQYGHFSTT 50

Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
           + + R  +               A       + E L+  GA +N K+    + LH A  +
Sbjct: 51  EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110

Query: 587 GRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ 632
                V+      +    ++       T   I+   G      I Q
Sbjct: 111 NHQEVVEL---LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 35/187 (18%), Positives = 56/187 (29%), Gaps = 35/187 (18%)

Query: 152 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPS 211
           +    L  A   G    V + + +GA  +T     S     A                  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYG------HFSTTEVLL 54

Query: 212 EKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK 271
              V  ++      TPLH AA     ++V+ L+  GAD+N  D  K + L  A      +
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 272 TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDF 331
                                         + L  K   D+    +  +TA  I+     
Sbjct: 115 V-----------------------------VELLIKYGADVHTQSKFCKTAFDISIDNGN 145

Query: 332 DECARIL 338
           ++ A IL
Sbjct: 146 EDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 22/148 (14%), Positives = 37/148 (25%), Gaps = 12/148 (8%)

Query: 69  TALHIAAIYDFDECARILVSE------------QPECDWIMVKDFGASLKRACSNGYYPI 116
             L  AA    D+  RIL++                            +           
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 117 HDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSG 176
               +                +       ++  D      LH A      + VEL +K G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 177 AKISTQQFDLSTPVHLACSQGALDIVRL 204
           A + TQ     T   ++   G  D+  +
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 7e-05
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 321 TALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIG 380
             L  AA    D+  RIL+ + GA        G  P+H AA+     T EV L+ G S  
Sbjct: 4   KKLLEAARAGQDDEVRILMAN-GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 381 CSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGAL 440
              +   +          H A   G    VE+ LK GA ++ +     T +H A      
Sbjct: 62  ARTKVDRTPL--------HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 441 DIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYL 484
           ++V L+           +++      T    +      D+ + L
Sbjct: 114 EVVELLIKYGA-----DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 20/158 (12%), Positives = 35/158 (22%), Gaps = 12/158 (7%)

Query: 288 LHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLK 347
           L  A    +   + IL+           G            +   E              
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR---------- 55

Query: 348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDF 407
                         +                +       ++         LH A      
Sbjct: 56  --AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 408 KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRL 445
           + VEL +K GA + TQ     T   ++   G  D+  +
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 15/137 (10%)

Query: 466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
           +  L  +++    D+VQ +I E  D +              +  G   +   V      +
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPS------------LPNDEGITALHNAVCAGHTEI 49

Query: 526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE---SPLHL 582
           +K + +  +      + G      A     V + + L+  GA +     S+    +    
Sbjct: 50  VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 109

Query: 583 AARYGRYNTVKKLLSSE 599
               G     + L   +
Sbjct: 110 EMEEGYTQCSQFLYGVQ 126

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 397 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 456
            L  +   G+F  V+  +      S    +  T +H A                  +  V
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-----GHTEIVKFLVQFGV 58

Query: 457 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDK---EKRSPLLLAASRGGWKT 513
            +N+ D+   TPLHCAA  +   V ++L++ GA +  +     +  +        G  + 
Sbjct: 59  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 118

Query: 514 VLTLVRNKANI 524
              L   +  +
Sbjct: 119 SQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 156 PLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLV 215
            L  +   G+F  V+  +      S    +  T +H A                  +  V
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-----GHTEIVKFLVQFGV 58

Query: 216 CLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD-KEKRSPLLLA-ASRGGWK 271
            +N+ D+   TPLHCAA  +   V ++L++ GA +  +   + ++          G+ 
Sbjct: 59  NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 116

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 18/151 (11%), Positives = 43/151 (28%), Gaps = 20/151 (13%)

Query: 467 TPLHCAAMFDRCDVVQYLID-EGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANIL 525
             L  AA       V+ L+  E    + L++  ++ L +         +  L +  +  +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 526 LKDINRRNILHLLVL-------------------NGGGHIKEFAEEVAAVFLGENLINLG 566
                   +                         +G G +              + +   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 567 ACINLKNNSNESPLHLAARYGRYNTVKKLLS 597
           + ++ ++    +PL LA + G  + V  L  
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 15/168 (8%)

Query: 319 GRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGES 378
               L  AA     +  R L+             G   +      +++  +E+  Q    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 379 IGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQG 438
                             P+H A   G    +++ ++ GA ++      + P+HLA  + 
Sbjct: 62  NVQDTSGTS---------PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE- 111

Query: 439 ALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID 486
                     +        L+  DA+ +TPL  A      D+V  L  
Sbjct: 112 -----GHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 18/153 (11%), Positives = 45/153 (29%), Gaps = 6/153 (3%)

Query: 226 TPLHCAAMFDRCDVVQYLID-EGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKK 284
             L  AA       V+ L+  E    + L++  ++ L +           +  +  +   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 285 QAVLHLATELNKVPILLILLQYKDMID---ILQGGEHGRTALHIAAIYDFDECARILVKD 341
           Q     +   +      +      +     +      G   +H+A           L  +
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 342 FGASLKRACSNGYYPIHDAAKNASSKTMEVFLQ 374
             + L R  + G  P+  A +  +   +++   
Sbjct: 124 --SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 18/154 (11%), Positives = 41/154 (26%), Gaps = 6/154 (3%)

Query: 188 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG 247
             +  A ++G +  VR + +     +LV  ++ +    T L           ++ L    
Sbjct: 4   DRLSGAAARGDVQEVRRLLH----RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 248 ADLNVLDKEKRSPLLLAASRGGWKTNGVNTR--ILNNKKQAVLHLATELNKVPILLILLQ 305
           +               A +        +      +N              +     ++  
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 306 YKDMIDILQGGEHGRTALHIAAIYDFDECARILV 339
                D+ +    G T L +A      +   IL 
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-05
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 4/117 (3%)

Query: 226 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQ 285
             L  AA   R + V+ L++ GA+ N  +   R P+ +           +          
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 286 AVLHLATELNKVPILLILLQYKDMIDILQGGE----HGRTALHIAAIYDFDECARIL 338
               L   ++       L     +       +     GR  + +A      + AR L
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-05
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL 526
             L  AA   R + V+ L++ GA+ N  +   R P+ +          L L+        
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY 586
                   +H     G                       GA +++++     P+ LA   
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVL------------HRAGARLDVRDAWGRLPVDLAEEL 112

Query: 587 GRYNTVKKLLSS 598
           G  +  + L ++
Sbjct: 113 GHRDVARYLRAA 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	641
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-53  Score=422.64  Aligned_cols=385  Identities=24%  Similarity=0.321  Sum_probs=296.3

Q ss_pred             cchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCC
Q psy8763          33 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNG  112 (641)
Q Consensus        33 ~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g  112 (641)
                      .||||+||..|++++|++|+++|+  +++..|..|.||||+|+..|+.++|++|+++            |++++..+..|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~--~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~------------gadi~~~~~~g   66 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLLQN------------KAKVNAKAKDD   66 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTC--CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH------------TCCSSCCCTTS
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC------------cCCCCCCCCCC
Confidence            378888888888888888888886  5666778888888888888888888888887            78888888888


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHH
Q psy8763         113 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHL  192 (641)
Q Consensus       113 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  192 (641)
                      .||||+|+..|+.+++++|+..+.++        ........+++..+...+...........+...+..+..+.++++.
T Consensus        67 ~t~L~~A~~~g~~~~~~~Ll~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  138 (408)
T d1n11a_          67 QTPLHCAARIGHTNMVKLLLENNANP--------NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV  138 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCT--------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhhhcc--------ccccccccchhhhhhhhcccccccccccccccccccccccchHHHH
Confidence            88888888888888888888777654        2334555677777777777777777777777777777777777777


Q ss_pred             HHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCccc
Q psy8763         193 ACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKT  272 (641)
Q Consensus       193 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  272 (641)
                      |+..++.+++++|++++..     ++..+..+.+||++|+..++.+++++|+++|++++..+..|.+|++          
T Consensus       139 a~~~~~~~~v~~ll~~~~~-----~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~----------  203 (408)
T d1n11a_         139 AAKYGKVRVAELLLERDAH-----PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH----------  203 (408)
T ss_dssp             HHHTTCHHHHHHHHHTTCC-----TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHH----------
T ss_pred             HHHcCCHHHHHHHHHcCCC-----CCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcch----------
Confidence            7777777777777777766     4666667777777777777777777777777766544333333222          


Q ss_pred             ccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccC
Q psy8763         273 NGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSN  352 (641)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  352 (641)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (408)
T d1n11a_         204 --------------------------------------------------------------------------------  203 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q psy8763         353 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  432 (641)
Q Consensus       353 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  432 (641)
                                                                     .++.....+....++..+......+..+.|||+
T Consensus       204 -----------------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~  236 (408)
T d1n11a_         204 -----------------------------------------------IAAKQNQVEVARSLLQYGGSANAESVQGVTPLH  236 (408)
T ss_dssp             -----------------------------------------------HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             -----------------------------------------------hhhccchhhhhhhhhhccccccccCCCCCCHHH
Confidence                                                           222222333333444444445555666778888


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHH
Q psy8763         433 LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK  512 (641)
Q Consensus       433 ~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  512 (641)
                      .|+..+..++++++++....     .+..+..|.|||+.|+..++.+++++|+++|++++..+..+.|||+.++..++.+
T Consensus       237 ~a~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~  311 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSKQAN-----GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK  311 (408)
T ss_dssp             HHHHTTCHHHHHHHHTTTCC-----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH
T ss_pred             HHHHhCcHhHhhhhhccccc-----cccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcce
Confidence            88888888888888774433     5667778888999999999999999999999999888888899999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHH
Q psy8763         513 TVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTV  592 (641)
Q Consensus       513 ~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  592 (641)
                      +++++++.|++++.+|..|.||||+|+..+            +.+++++|+++|++++.+|..|+||||+|++.|+.++|
T Consensus       312 ~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g------------~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         312 LVKFLLQHQADVNAKTKLGYSPLHQAAQQG------------HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT------------CHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             eeeeeccccccccccCCCCCCHHHHHHHcC------------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999999999999988            88899999999999999999999999999999999988


Q ss_pred             HHHHhc
Q psy8763         593 KKLLSS  598 (641)
Q Consensus       593 ~~Ll~~  598 (641)
                      ++|..-
T Consensus       380 ~~L~~~  385 (408)
T d1n11a_         380 DVLKVV  385 (408)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            866533

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-54  Score=424.01  Aligned_cols=384  Identities=28%  Similarity=0.395  Sum_probs=335.7

Q ss_pred             ChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHh
Q psy8763         154 NLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAM  233 (641)
Q Consensus       154 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~  233 (641)
                      .||||.||..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++     ++..+..|.|||++|+.
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-----i~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-----VNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-----SSCCCTTSCCHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-----CCCCCCCCCCHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999987     68889999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcccccccccccccCchhHHHHHHhcCChhHHHHHhhCCCccccc
Q psy8763         234 FDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDIL  313 (641)
Q Consensus       234 ~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~  313 (641)
                      .|+.+++++|+..+.++........++...+                                                 
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  106 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIA-------------------------------------------------  106 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHH-------------------------------------------------
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhh-------------------------------------------------
Confidence            9999999999999887665544444444433                                                 


Q ss_pred             CCCCCcchHHHHHHHhCcHHHHHHHHHhcCccccccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhc
Q psy8763         314 QGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAE  393 (641)
Q Consensus       314 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  393 (641)
                                   ...+......... ..+......+..+.++++.++..++.+++++|++++.+++        ..+..
T Consensus       107 -------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~--------~~~~~  164 (408)
T d1n11a_         107 -------------AREGHVETVLALL-EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN--------AAGKN  164 (408)
T ss_dssp             -------------HHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------CCCSS
T ss_pred             -------------hhhcccccccccc-cccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC--------cCCCc
Confidence                         3333333333333 4455555666677777777777777777777777776643        33456


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHH
Q psy8763         394 GNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAA  473 (641)
Q Consensus       394 ~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~  473 (641)
                      +.+||+.|+..++.+++++|+++|++++..+..+.||++.+......++...++.....     ....+..+.|||+.|+
T Consensus       165 ~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-----ANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTCCCHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcccc-----ccccCCCCCCHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999885443     4567778999999999


Q ss_pred             hcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHH
Q psy8763         474 MFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEV  553 (641)
Q Consensus       474 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~  553 (641)
                      ..+..++++++++.+..++..+..|.||++.|++.++.+++++|+++|++++..+..+.||||.++..+           
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~-----------  308 (408)
T d1n11a_         240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG-----------  308 (408)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSS-----------
T ss_pred             HhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccC-----------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999           


Q ss_pred             HHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeecee
Q psy8763         554 AAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       554 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                       ..+++++++++|++++.+|..|+||||+|+++|+.++|++|+++||+   ++.+|.+|+||||+|+++|+.++|++|..
T Consensus       309 -~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd---~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         309 -NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             -CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             -cceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence             88899999999999999999999999999999999999999999999   89999999999999999999999998743

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=276.45  Aligned_cols=219  Identities=26%  Similarity=0.374  Sum_probs=203.8

Q ss_pred             CChHHHHHHhcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHH
Q psy8763         394 GNLPLHSAVHGGDFKAVELCL-KSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCA  472 (641)
Q Consensus       394 ~~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A  472 (641)
                      +.+.++.++..|+.+.++.++ +.+.+++.+|..|+||||+|+..|+.+++++++.....     ....+..+.++++.+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~-----~~~~~~~~~~~~~~~   77 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-----VNDKDDAGWSPLHIA   77 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-----SCCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc-----ccccccccccccccc
Confidence            456788899999998886655 56788999999999999999999999999999986544     566677889999999


Q ss_pred             HhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHH
Q psy8763         473 AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEE  552 (641)
Q Consensus       473 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~  552 (641)
                      +..++.+++++|+++|++++..+..|+||||+|+..++.+++++|+++|++++.++..|.||||+|+..+          
T Consensus        78 ~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~----------  147 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKG----------  147 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----------
T ss_pred             ccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcC----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             HHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeece
Q psy8763         553 VAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQ  632 (641)
Q Consensus       553 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~  632 (641)
                        ..+++++|++.|.+++.+|..|+||||+|+++|+.++|++|+++|++   ++..|..|+||||+|+ +|+.+++++|+
T Consensus       148 --~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad---~~~~d~~g~tpl~~A~-~~~~~i~~~Ll  221 (223)
T d1uoha_         148 --NLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS---IYIENKEEKTPLQVAK-GGLGLILKRMV  221 (223)
T ss_dssp             --CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHCC-TTHHHHHHHHH
T ss_pred             --CcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHH-CCCHHHHhccc
Confidence              88999999999999999999999999999999999999999999999   8999999999999984 79999998886


Q ss_pred             e
Q psy8763         633 V  633 (641)
Q Consensus       633 ~  633 (641)
                      +
T Consensus       222 ~  222 (223)
T d1uoha_         222 E  222 (223)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-37  Score=280.40  Aligned_cols=208  Identities=25%  Similarity=0.253  Sum_probs=186.8

Q ss_pred             cccccCCCcchhhHHHhcCCHHHHHHHHhcCCccc-cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCC
Q psy8763          25 TRILNNKKQAVLHLATELNKVPILLILLQYKDMID-ILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGA  103 (641)
Q Consensus        25 ~~~~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~  103 (641)
                      +.+.+.+|+||||+||+.|+.+++++|+++|+++. ++..+..|.||||+|+..|+.+++++|+++            |+
T Consensus         2 ~~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~------------ga   69 (255)
T d1oy3d_           2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA------------GA   69 (255)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT------------TC
T ss_pred             CccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccc------------cc
Confidence            46789999999999999999999999999997544 677889999999999999999999999999            99


Q ss_pred             CcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCC---------------------------------------chhh
Q psy8763         104 SLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGC---------------------------------------SREE  144 (641)
Q Consensus       104 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---------------------------------------~~~~  144 (641)
                      +++..+..|.||||+|+..|+.+++++|++.+.....                                       ....
T Consensus        70 ~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (255)
T d1oy3d_          70 GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL  149 (255)
T ss_dssp             CSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGG
T ss_pred             cccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCc
Confidence            9999999999999999999999999999876544321                                       1122


Q ss_pred             hhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcC-CCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCC
Q psy8763         145 MISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQ-QFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQ  223 (641)
Q Consensus       145 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  223 (641)
                      .++..+..|.||||+|+..|+.++|++|++.|++++.. +..|.||||+|+..|+.+++++|++++++     ++.++..
T Consensus       150 ~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad-----in~~d~~  224 (255)
T d1oy3d_         150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-----PTARMYG  224 (255)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTT
T ss_pred             ccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC-----CCCCCCC
Confidence            33556888999999999999999999999999998864 56799999999999999999999999988     6889999


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8763         224 KMTPLHCAAMFDRCDVVQYLIDEGAD  249 (641)
Q Consensus       224 ~~t~L~~A~~~~~~~iv~~Ll~~g~~  249 (641)
                      |.||||+|+..++.+++++|+++||+
T Consensus       225 g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         225 GRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             SCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999996

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-36  Score=265.67  Aligned_cols=207  Identities=23%  Similarity=0.344  Sum_probs=189.4

Q ss_pred             CcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCC
Q psy8763          32 KQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSN  111 (641)
Q Consensus        32 ~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~  111 (641)
                      +.+.|+.+|..|+++.|+.+++.+. ..++.+|..|+||||+|+..|+.+++++|+..            +.+....+..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~-~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~------------~~~~~~~~~~   69 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQL------------GVPVNDKDDA   69 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCG-GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH------------TCCSCCCCTT
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCC-CcCcCcCCCCCCHHHHHHHhhhhccccccccc------------cccccccccc
Confidence            4678899999999999988876554 36778899999999999999999999999998            7777788888


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHH
Q psy8763         112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  191 (641)
Q Consensus       112 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~  191 (641)
                      +.++++.|+..|+.+++++|+++|+++        +..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus        70 ~~~~~~~~~~~~~~~i~~~Ll~~~~d~--------~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~  141 (223)
T d1uoha_          70 GWSPLHIAASAGRDEIVKALLGKGAQV--------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMH  141 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccccccccccccchhHHHhccCcee--------EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccch
Confidence            899999999999999999999999886        567889999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q psy8763         192 LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLA  264 (641)
Q Consensus       192 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a  264 (641)
                      +|+..++.+++++|++.+.+     ++..+..|+||||.|+..|+.++|++|+++|++++..|..|+||+++|
T Consensus       142 ~a~~~~~~~~~~~L~~~~~~-----i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         142 RAAAKGNLKMIHILLYYKAS-----TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-----SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC
T ss_pred             hhhhcCCcchhhhhccccce-----eeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999998887     688999999999999999999999999999999999999999999877

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-34  Score=268.80  Aligned_cols=279  Identities=24%  Similarity=0.295  Sum_probs=205.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHH
Q psy8763         112 GYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVH  191 (641)
Q Consensus       112 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~  191 (641)
                      +.|+|+.|++.|+.++|++|+++|++++..       .+..|.||||+|+..|+.+++++|++.|..+...+..+.+|.+
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~-------~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~   77 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-------EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-------CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCcc-------CCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhH
Confidence            458999999999999999999999998532       3457899999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCcc
Q psy8763         192 LACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWK  271 (641)
Q Consensus       192 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  271 (641)
                      .|+..+..+...++++....     ....+..+.++++.|+..++...++.+++...+++........            
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  140 (285)
T d1wdya_          78 LAAIAGSVKLLKLFLSKGAD-----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED------------  140 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-----TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHH------------
T ss_pred             HHhhcCCccccchhhhhccc-----ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhh------------
Confidence            99999999999999988766     3556778899999999999999999999988776643222110            


Q ss_pred             cccccccccccCchhHHHHHHhcCChhHHHHHhhCCCcccccCCCCCcchHHHHHHHhCcHHHHHHHHHhcCcccccccc
Q psy8763         272 TNGVNTRILNNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVKDFGASLKRACS  351 (641)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  351 (641)
                                                              .......|.|||++|+..++.+++++|++..+++++..+.
T Consensus       141 ----------------------------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~  180 (285)
T d1wdya_         141 ----------------------------------------QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN  180 (285)
T ss_dssp             ----------------------------------------HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT
T ss_pred             ----------------------------------------hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccC
Confidence                                                    0011234678888888888888888888777777777776


Q ss_pred             CCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy8763         352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPV  431 (641)
Q Consensus       352 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  431 (641)
                      .+.++...+...                                     +...+..+++++|+++|++++.++..|.|||
T Consensus       181 ~~~~~~~~~~~~-------------------------------------~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L  223 (285)
T d1wdya_         181 MGRNALIHALLS-------------------------------------SDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             TSCCHHHHHHHC-------------------------------------SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CCCccccccccc-------------------------------------ccchHHHHHHHHHHHCCCCCCccCCCCCCcc
Confidence            666655433222                                     1122234567777777777777666666666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCC
Q psy8763         432 HLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLD  495 (641)
Q Consensus       432 ~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  495 (641)
                      |.|+..++.+++++|++.    .+.+++.+|..|.||||+|++.++.++|++|+++|||+|+.|
T Consensus       224 ~~a~~~~~~~~v~~lL~~----~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHS----SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             chhhhcCcHHHHHHHHHc----CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            666666666666666652    233355666666666666666666666666666666666554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-35  Score=269.13  Aligned_cols=237  Identities=21%  Similarity=0.152  Sum_probs=186.7

Q ss_pred             ccccCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCC
Q psy8763         348 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL  427 (641)
Q Consensus       348 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  427 (641)
                      ..+.+|.||||+|+.+++.+++++|+++|+++.     .++..+..|.||||+|+..|+.+++++|++.|++++..+..|
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~-----~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g   78 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE-----YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG   78 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG-----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTS
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----cccCcCCCCCCccchHHhhccccccccccccccccccccccc
Confidence            356788999999999999999999999887642     244556789999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccc-----cccCCCCCCcHHHHHHhc---C-ChhHHHHHHHcCCCCCcCCCCC
Q psy8763         428 STPVHLACSQGALDIVRLMFNLQPSEKLVC-----LNSTDAQKMTPLHCAAMF---D-RCDVVQYLIDEGADLNVLDKEK  498 (641)
Q Consensus       428 ~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~-----~~~~~~~~~t~L~~A~~~---~-~~~~v~~Ll~~g~~~~~~~~~g  498 (641)
                      .|||+.|+..++.+++++|++.........     ....+....+....+...   . ...........+.+++.++..|
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g  158 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccC
Confidence            999999999999999999988544321100     001111111111111111   1 1122223333477888899999


Q ss_pred             CCHHHHHHhcCCHHHHHHHHHcCCCcccc-ccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCC
Q psy8763         499 RSPLLLAASRGGWKTVLTLVRNKANILLK-DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE  577 (641)
Q Consensus       499 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~  577 (641)
                      .||||+|+..++.+++++|++++++++.. +..|.||||+|+..+            +.+++++|+++|++++.+|..|+
T Consensus       159 ~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~------------~~~~v~~Ll~~gadin~~d~~g~  226 (255)
T d1oy3d_         159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ------------AASVLELLLKAGADPTARMYGGR  226 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccccccccccccccccchhccccccccccccccccccccccccc------------HHHHHHHHHHCCCCCCCCCCCCC
Confidence            99999999999999999999999998865 577999999999999            99999999999999999999999


Q ss_pred             ChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         578 SPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       578 t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      ||||+|+.+++.+++++|+++||+
T Consensus       227 t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         227 TPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999997

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-34  Score=265.21  Aligned_cols=268  Identities=21%  Similarity=0.214  Sum_probs=227.4

Q ss_pred             cchHHHHHHHhCcHHHHHHHHHhcCccccccc-cCCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChH
Q psy8763         319 GRTALHIAAIYDFDECARILVKDFGASLKRAC-SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLP  397 (641)
Q Consensus       319 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~  397 (641)
                      +.|+|+.|+..|+.+++++|+ +.|++++.++ ..|.||||+|+..++.+++++|++.+....        ..+..+.+|
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll-~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~--------~~~~~~~~~   75 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV--------LRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------CCCTTCCCH
T ss_pred             CcHHHHHHHHcCCHHHHHHHH-HCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc--------ccccccchh
Confidence            578888888888888888888 6788887554 468889999999888889988888887643        334467788


Q ss_pred             HHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-----cccccccCCCCCCcHHHHH
Q psy8763         398 LHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSE-----KLVCLNSTDAQKMTPLHCA  472 (641)
Q Consensus       398 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~-----~~~~~~~~~~~~~t~L~~A  472 (641)
                      .+.+...+..+...++++...+....+..+.++++.|+..++...++.++......     ...........|.||||+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  155 (285)
T d1wdya_          76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA  155 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHH
T ss_pred             hHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHH
Confidence            88888888999999998888877777888899999999999999888888754331     1122344566789999999


Q ss_pred             HhcCChhHHHHHHHc-CCCCCcCCCCCCCHHHHHHhcC----CHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchh
Q psy8763         473 AMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRG----GWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIK  547 (641)
Q Consensus       473 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~----~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  547 (641)
                      ++.++.+++++|+++ |++++..+..|.+++..+...+    ..+++++|+++|++++.++..|.||||.|+.++     
T Consensus       156 ~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~-----  230 (285)
T d1wdya_         156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK-----  230 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT-----
T ss_pred             HHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcC-----
Confidence            999999999999976 8999999999999988775433    347899999999999999999999999999999     


Q ss_pred             hHHHHHHHHHHHHHHhh-cCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCC
Q psy8763         548 EFAEEVAAVFLGENLIN-LGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDG  610 (641)
Q Consensus       548 ~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~  610 (641)
                             +.+++++|++ .|++++.+|.+|+||||+|+++|+.++|++|+++||+   +|.+|.
T Consensus       231 -------~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd---~n~~d~  284 (285)
T d1wdya_         231 -------HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS---TDCGDL  284 (285)
T ss_dssp             -------CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC---SCCSSC
T ss_pred             -------cHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCcccC
Confidence                   8999999997 5899999999999999999999999999999999999   787763

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-33  Score=254.57  Aligned_cols=210  Identities=24%  Similarity=0.278  Sum_probs=190.6

Q ss_pred             cchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcc---cCC
Q psy8763          33 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLK---RAC  109 (641)
Q Consensus        33 ~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~---~~~  109 (641)
                      .||||+||+.|+.++|+.|++.+. .+++.+|.+|+||||+|+..|+.+++++|+++            |++++   ..+
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~------------ga~~~~~~~~~   67 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK------------MENVNLDDYPD   67 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTT------------CTTCCGGGCCC
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCCHHHHHHHcCCccccchhhhh------------hcccccccccc
Confidence            489999999999999999998654 36788999999999999999999999999999            66664   456


Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcH
Q psy8763         110 SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTP  189 (641)
Q Consensus       110 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~  189 (641)
                      ..|.+|+++|+..+..++++.++..+...+.      ...+..+.|+++.++..++.++++.|++.|.+++..+..|+||
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~  141 (229)
T d1ixva_          68 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL------NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP  141 (229)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHSSSSCCCT------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             ccccccccccccccccccccccccccccccc------cccccccccccccccccchhhhhhhhhhhcccccccCCCCCCc
Confidence            7889999999999999999999998876542      3456788999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHH-cCCCCCccCCCCCCHHHHHH
Q psy8763         190 VHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLID-EGADLNVLDKEKRSPLLLAA  265 (641)
Q Consensus       190 l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~~t~l~~a~  265 (641)
                      ||+|+..|+.+++++|++.++..    ++.++..|.||||+|+..|+.++|++|++ .|++++.+|..|.||+++|+
T Consensus       142 l~~a~~~~~~~~~~~Ll~~~~~~----in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         142 LHRAASVGSLKLIELLCGLGKSA----VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCC----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             cchhhhccccccccccccccccc----ccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence            99999999999999999988655    78899999999999999999999999997 59999999999999999874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3e-34  Score=268.42  Aligned_cols=217  Identities=24%  Similarity=0.338  Sum_probs=197.8

Q ss_pred             cCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHH
Q psy8763         393 EGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCA  472 (641)
Q Consensus       393 ~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A  472 (641)
                      .+.|+|+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+..     ....+..+.+||+.+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-----~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-----INQPDNEGWIPLHAA  113 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccc-----ccccccccccccccc
Confidence            456899999999999999999999999999999999999999999999999999996554     567788899999999


Q ss_pred             HhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHc-CC--------------------------Ccc
Q psy8763         473 AMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRN-KA--------------------------NIL  525 (641)
Q Consensus       473 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~--------------------------~~~  525 (641)
                      +..++.++++.|+++|+..+..+..+.+|+++|+..+..+.++.++.. +.                          +..
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccc
Confidence            999999999999999999999999999999999988888888888754 22                          234


Q ss_pred             ccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCcccc
Q psy8763         526 LKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFII  605 (641)
Q Consensus       526 ~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  605 (641)
                      ..+..|.||||+|+..+            ..++++.|+++|++++.++..|+||||+|+..|+.++|++|+++|++   +
T Consensus       194 ~~~~~g~t~L~~a~~~~------------~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad---v  258 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKG------------YTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD---M  258 (291)
T ss_dssp             CCTTTCCCHHHHHHHHT------------CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---T
T ss_pred             cccCCCCChhhHHHHcC------------ChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC---C
Confidence            46788999999999999            99999999999999999999999999999999999999999999999   8


Q ss_pred             ccCCCCCChhHHHHHhhCCcceeeecee
Q psy8763         606 NESDGEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       606 ~~~d~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                      +.+|..|+||||+|++    +++++|.+
T Consensus       259 ~~~d~~G~TaL~~A~e----~~~~~L~~  282 (291)
T d1s70b_         259 EAVNKVGQTAFDVADE----DILGYLEE  282 (291)
T ss_dssp             TCCCTTSCCTTTSCCS----GGGHHHHH
T ss_pred             CCcCCCCCCHHHHHHH----HHHHHHHH
Confidence            9999999999999975    46666644

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-32  Score=246.89  Aligned_cols=222  Identities=25%  Similarity=0.289  Sum_probs=174.7

Q ss_pred             ChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCC---CCCCCCcHH
Q psy8763         355 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKIST---QQFDLSTPV  431 (641)
Q Consensus       355 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~---~~~~~~t~l  431 (641)
                      +|||+|+..++.+.++.|++....       .++..+.+|.||||+|+..|+.+++++|+++|++++.   .+..+.+|+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~-------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   74 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPS-------LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF   74 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGG-------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCC-------cccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccc
Confidence            677888888887777777764332       1345567788888888888888888888888888764   355677888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCH
Q psy8763         432 HLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW  511 (641)
Q Consensus       432 ~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  511 (641)
                      +.++..+..++++.++..+..   ......+..+.|+++.++..++.+++++|++.|.+.+..+..|+||||+|+..++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~  151 (229)
T d1ixva_          75 HIACSVGNLEVVKSLYDRPLK---PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL  151 (229)
T ss_dssp             HHHHHHTCHHHHHHHHSSSSC---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH
T ss_pred             ccccccccccccccccccccc---ccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccc
Confidence            888888888888887765432   12445666778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcC-CCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhh-cCCcccccCCCCCChHHHHHhcCCH
Q psy8763         512 KTVLTLVRNK-ANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN-LGACINLKNNSNESPLHLAARYGRY  589 (641)
Q Consensus       512 ~~v~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~  589 (641)
                      +++++|++++ .+++.+|.+|.||||+|+.++            ..+++++|++ .|++++.+|..|+||||+|+.   .
T Consensus       152 ~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~------------~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~  216 (229)
T d1ixva_         152 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEG------------HGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---E  216 (229)
T ss_dssp             HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTT------------CHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---H
T ss_pred             cccccccccccccccccccccCCchhhhcccc------------cHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---H
Confidence            8888888886 567888888888888888888            8888888886 588888888888888888874   4


Q ss_pred             HHHHHHHhcCCC
Q psy8763         590 NTVKKLLSSERG  601 (641)
Q Consensus       590 ~~v~~Ll~~g~~  601 (641)
                      +++++|+++|+|
T Consensus       217 ~~~~~Ll~~g~d  228 (229)
T d1ixva_         217 QVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHcCCC
Confidence            788888888876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.1e-32  Score=254.15  Aligned_cols=236  Identities=21%  Similarity=0.231  Sum_probs=190.9

Q ss_pred             ccCCCceeeeccCCCcccccccCCCcchhhHHHhcCCHHHHHHHH--------hcCCccccccCCCCCchHHHHHHHcCC
Q psy8763           8 SDNKNKSRLIPSSSGVNTRILNNKKQAVLHLATELNKVPILLILL--------QYKDMIDILQGGEHGRTALHIAAIYDF   79 (641)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~ll--------~~g~~~~~~~~~~~g~t~L~~A~~~g~   79 (641)
                      .|+..+.+.+. +.++|.... ..|+||||+||..|+.++|++|+        +.|+  +++.+|..|+||||+|+..|+
T Consensus        11 ~~~~~~~~~l~-~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Ga--dvn~~d~~G~TpLh~A~~~g~   86 (277)
T d2fo1e1          11 AGSYAITEPIT-RESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA--DVNAMDCDENTPLMLAVLARR   86 (277)
T ss_dssp             HSSSCCCSCCS-TTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCC--CTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHH-hcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCC--CccccCCCCCeeecccccccc
Confidence            34455555544 477775322 35999999999999999998875        5576  777899999999999999999


Q ss_pred             HHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHH
Q psy8763          80 DECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHS  159 (641)
Q Consensus        80 ~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~  159 (641)
                      .++|++|+++            |++++.++..|.|||+.|+..++.++++++...+...     ..++..+..+.++.+.
T Consensus        87 ~~iv~~Ll~~------------Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~  149 (277)
T d2fo1e1          87 RRLVAYLMKA------------GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK-----GDIEELDRNGMTALMI  149 (277)
T ss_dssp             HHHHHHHHHT------------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH-----HTTSCCCTTSCCHHHH
T ss_pred             cccccccccc------------ccccccccccccccccchhhhcchhhhhhhhhccccc-----ccccccccccchhHHH
Confidence            9999999999            9999999999999999999999999999988654321     1124557778899999


Q ss_pred             HHhCCC---HHHHHHHHHcCC--------CCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHH
Q psy8763         160 AVHGGD---FKAVELCLKSGA--------KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL  228 (641)
Q Consensus       160 A~~~g~---~~~v~~Ll~~g~--------~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L  228 (641)
                      +...+.   ...++.+.+...        ..+..+..|.|||++++..++.+++++++......    .+..+..|.|||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~----~~~~d~~g~tpL  225 (277)
T d2fo1e1         150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN----KDKQDEDGKTPI  225 (277)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC----TTCCCTTCCCHH
T ss_pred             HHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccc----ccccCCCCCCHH
Confidence            887775   344445554432        23445677899999999999999999877655443    677899999999


Q ss_pred             HHHHhcCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q psy8763         229 HCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRG  268 (641)
Q Consensus       229 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~t~l~~a~~~~  268 (641)
                      |+|+..|+.++|++|+++|++++.+|..|.|||++|+..+
T Consensus       226 ~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         226 MLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999999999999999999999888887665

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=2.3e-32  Score=255.53  Aligned_cols=210  Identities=24%  Similarity=0.340  Sum_probs=191.1

Q ss_pred             cCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccC
Q psy8763          29 NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRA  108 (641)
Q Consensus        29 ~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~  108 (641)
                      +..+.|+|+.||+.|++++|++|+++|+  +++..|.+|.||||+|+.+|+.++|++|+++            |.+....
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Ga--dvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~------------~~~~~~~  102 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGA--DINYANVDGLTALHQACIDDNVDMVKFLVEN------------GANINQP  102 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCC--CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT------------TCCTTCC
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCC--CCCccCCCCCcHHHHHHhcCCceeeeeeccc------------ccccccc
Confidence            3456799999999999999999999997  6778899999999999999999999999999            8888888


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHc-CC----------
Q psy8763         109 CSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKS-GA----------  177 (641)
Q Consensus       109 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~----------  177 (641)
                      +..+.+||+.|+..++.++++.|+++|+..        ...+..+.+++++|+..+..+.++.++.. |.          
T Consensus       103 ~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  174 (291)
T d1s70b_         103 DNEGWIPLHAAASCGYLDIAEYLISQGAHV--------GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE  174 (291)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             cccccccccccccccccchhhcccccCccc--------ccccccCccccccccccccchhcccccccccccccccccccc
Confidence            899999999999999999999999999876        45688999999999999999999988753 22          


Q ss_pred             ----------------CCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHH
Q psy8763         178 ----------------KISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQ  241 (641)
Q Consensus       178 ----------------~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~  241 (641)
                                      +....+..|.|||+.|+..|+.+++++|++.+++     ++..+..|.||||+|+..|+.++|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-----in~~~~~g~TpL~~A~~~g~~~iv~  249 (291)
T d1s70b_         175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-----VNIKDYDGWTPLHAAAHWGKEEACR  249 (291)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-----TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceec-----ccccccCCCCHHHHHHHcCCHHHHH
Confidence                            2344667889999999999999999999999988     6889999999999999999999999


Q ss_pred             HHHHcCCCCCccCCCCCCHHHHHH
Q psy8763         242 YLIDEGADLNVLDKEKRSPLLLAA  265 (641)
Q Consensus       242 ~Ll~~g~~~~~~~~~~~t~l~~a~  265 (641)
                      +|+++|++++..|..|.|||++|+
T Consensus       250 lLl~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         250 ILVENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHH
Confidence            999999999999999999999884

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=3.8e-33  Score=259.17  Aligned_cols=229  Identities=21%  Similarity=0.301  Sum_probs=182.6

Q ss_pred             CCCChHHHHHHcCChHHHHHHHhccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q psy8763         352 NGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPV  431 (641)
Q Consensus       352 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  431 (641)
                      .|.||||+|+..|+.++++.|+.+.                                 .+.+++.|++++.++..|.|||
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~---------------------------------~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHE---------------------------------AKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHH---------------------------------HHHHHHTCCCTTCCCTTSCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcc---------------------------------hhHHHHcCCCccccCCCCCeee
Confidence            3666666666666666666665422                                 2455678888888888888999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcC---CCCCcCCCCCCCHHHHHHhc
Q psy8763         432 HLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEG---ADLNVLDKEKRSPLLLAASR  508 (641)
Q Consensus       432 ~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~  508 (641)
                      |+|+..|+.+++++|++.+     .+++.++..|.|||++|+..++.++++++...+   ..++..+..+.++.+.+...
T Consensus        79 h~A~~~g~~~iv~~Ll~~G-----ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAG-----ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN  153 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTT-----CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS
T ss_pred             ccccccccccccccccccc-----cccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhc
Confidence            9998888899999888854     447778888889999998888888888887664   45666777888888888876


Q ss_pred             CCHH---HHHHHHHcCC--------CccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHh-hcCCcccccCCCC
Q psy8763         509 GGWK---TVLTLVRNKA--------NILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLI-NLGACINLKNNSN  576 (641)
Q Consensus       509 ~~~~---~v~~Ll~~g~--------~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll-~~g~~~~~~~~~g  576 (641)
                      +..+   .+..+.+...        ..+..+..|.||||+++..+            ..+++++++ ..+.+++.+|..|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~------------~~~~~~~~l~~~~~~~~~~d~~g  221 (277)
T d2fo1e1         154 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS------------NMPIVKYLVGEKGSNKDKQDEDG  221 (277)
T ss_dssp             CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSC------------CHHHHHHHHHHSCCCTTCCCTTC
T ss_pred             ccccccccccccccccccccccccccccccccCCCCccccccccc------------cccccccccccccccccccCCCC
Confidence            6533   4444444422        23456778999999999999            777777644 6789999999999


Q ss_pred             CChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeecee
Q psy8763         577 ESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       577 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                      +||||+|++.|+.++|++|+++|++   ++.+|..|+||||+|+..|+.+++++|++
T Consensus       222 ~tpL~~A~~~g~~~iv~~Ll~~gad---in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         222 KTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999   89999999999999999999999999874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-31  Score=237.29  Aligned_cols=198  Identities=21%  Similarity=0.205  Sum_probs=173.2

Q ss_pred             CCcchhhHHHhcCCHHH----HHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcc
Q psy8763          31 KKQAVLHLATELNKVPI----LLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLK  106 (641)
Q Consensus        31 ~~~t~L~~A~~~g~~~~----v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~  106 (641)
                      +|.||||+|+..|+.++    ++++..+|+  +++..|..|+||||+|+..|+.+++++|+++            |++++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~--~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~------------g~d~~   66 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEALLGA------------GCDPE   66 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CC--CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC------------CCCSC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCC--CcccCCCCCCccccccccccccccccccccc------------ccccc
Confidence            58999999999999644    455556676  6778899999999999999999999999999            99999


Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCC-CC
Q psy8763         107 RACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQ-FD  185 (641)
Q Consensus       107 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~  185 (641)
                      ..+..|.|||+.|+..|+.++++.|++.+......  .........|.|||+.|+..++.+++++|++.|+.++..+ ..
T Consensus        67 ~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~  144 (221)
T d1iknd_          67 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH--SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN  144 (221)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS--CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTT
T ss_pred             ccccccccccccccccccccccchhhhhccccccc--ccccccccccchhhhHHhhcCChhheeeecccCcccccccccC
Confidence            99999999999999999999999999988765322  2234456678999999999999999999999999988765 56


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q psy8763         186 LSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGAD  249 (641)
Q Consensus       186 ~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~  249 (641)
                      |.||||+|+..|+.+++++|++++++     ++.++..|.|||++|+..++.+++++|++.+.+
T Consensus       145 G~T~L~~A~~~g~~~~v~~Ll~~gad-----~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         145 GRTALHLAVDLQNPDLVSLLLKCGAD-----VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCC-----SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CCCccccccccccHHHHHHHHhcCCc-----ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            99999999999999999999999998     689999999999999999999999999998764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.7e-29  Score=223.20  Aligned_cols=206  Identities=23%  Similarity=0.265  Sum_probs=180.6

Q ss_pred             hHHHHHHHhccccccCChHHHhHH-HhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy8763         366 SKTMEVFLQFGESIGCSREEMISL-FAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVR  444 (641)
Q Consensus       366 ~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~  444 (641)
                      .+++++|+++|+++        +. .|.+|.||||+|+..|+.+++++|++.|++++..+..+.++++.++..++.....
T Consensus         2 ~~~v~~Ll~~g~di--------n~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~   73 (209)
T d1ot8a_           2 AQVISDLLAQGAEL--------NATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQ   73 (209)
T ss_dssp             HHHHHHHHHHHHHH--------HHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHCCCCc--------CcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccc
Confidence            47899999999974        33 4778999999999999999999999999999999999999999999999888877


Q ss_pred             HHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCc
Q psy8763         445 LMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANI  524 (641)
Q Consensus       445 ~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  524 (641)
                      .........    .......+.++.+.+.........+.|.+.|++++..+..|+|||++++..+..++++.|++++.++
T Consensus        74 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~  149 (209)
T d1ot8a_          74 ILLRNRATN----LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR  149 (209)
T ss_dssp             HHHTCTTCC----TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccccccc----cccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc
Confidence            776643332    3445566788889999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHH
Q psy8763         525 LLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKL  595 (641)
Q Consensus       525 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  595 (641)
                      +.+|..|.||||+|+..+            +.+++++|+++|+|++.+|..|.||||+|+++|+.++|++|
T Consensus       150 ~~~d~~g~TpL~~A~~~g------------~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         150 DAQDDKDETPLFLAAREG------------SYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCTTCCCHHHHHHHTT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccchhcccc------------HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999998            88899999999999999999999999999999999999876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-31  Score=239.04  Aligned_cols=192  Identities=22%  Similarity=0.143  Sum_probs=149.0

Q ss_pred             cCChHHHHHHhcCCH----HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcH
Q psy8763         393 EGNLPLHSAVHGGDF----KAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP  468 (641)
Q Consensus       393 ~~~t~l~~a~~~~~~----~~~~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~  468 (641)
                      +|.||||+|+..|+.    ++++++...|++++..+..|+||||+|+..++.+++++|++.+     .+++..+..|.||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g-----~d~~~~d~~g~t~   75 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG-----CDPELRDFRGNTP   75 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC-----CCSCCCCTTCCCH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccc-----ccccccccccccc
Confidence            478888888888875    4455666778888888888888888888888888888888744     3467778888888


Q ss_pred             HHHHHhcCChhHHHHHHHcCCCCCc------CCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccc-cCCCchhHHHhhc
Q psy8763         469 LHCAAMFDRCDVVQYLIDEGADLNV------LDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKD-INRRNILHLLVLN  541 (641)
Q Consensus       469 L~~A~~~~~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~a~~~  541 (641)
                      |+.++..++.++++.|++.+.+...      ....|.|||+.|+..++.+++++|+..|+.++..+ .+|.||||+|+..
T Consensus        76 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~  155 (221)
T d1iknd_          76 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  155 (221)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             cccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccc
Confidence            8888888888888888887654322      23457788888888888888888888888887664 5688888888888


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCC
Q psy8763         542 GGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERG  601 (641)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  601 (641)
                      +            +.+++++|+++|+|++.+|..|+||||+|+.+++.+++++|++.+.+
T Consensus       156 g------------~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         156 Q------------NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             T------------CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             c------------cHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            8            88888888888888888888888888888888888888888887765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=2.3e-30  Score=228.77  Aligned_cols=205  Identities=27%  Similarity=0.293  Sum_probs=188.0

Q ss_pred             HHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHH
Q psy8763         407 FKAVELCLKSGAKIST-QQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLI  485 (641)
Q Consensus       407 ~~~~~~Ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll  485 (641)
                      .+++++|+++|++++. .|.+|.||||+|+..|+.+++++|++.+..     ++..+..+.++++.++..++........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-----~n~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-----ANSQDNTGRTPLHAAVAADAMGVFQILL   76 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-----cccccccccccccccccccccccccccc
Confidence            4899999999999987 588999999999999999999999995444     7889999999999999999988777776


Q ss_pred             HcCC-CCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhh
Q psy8763         486 DEGA-DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLIN  564 (641)
Q Consensus       486 ~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~  564 (641)
                      .... ........|.++.+.+.........+.|.+++++++.++..|.|||+.++.++            ...+++.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~------------~~~~~~~l~~  144 (209)
T d1ot8a_          77 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN------------NTEAVNILLM  144 (209)
T ss_dssp             TCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT------------CHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccC------------cceeeeeecc
Confidence            6543 33334567889999999999999999999999999999999999999999999            8999999999


Q ss_pred             cCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeec
Q psy8763         565 LGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIF  631 (641)
Q Consensus       565 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l  631 (641)
                      .+.+++..|..|.||||+|+..|+.++|++|+++|++   ++..|..|+||||+|++.|+.++|++|
T Consensus       145 ~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad---~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         145 HHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN---REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccccchhccccHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999999999   899999999999999999999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-29  Score=225.29  Aligned_cols=217  Identities=26%  Similarity=0.267  Sum_probs=195.6

Q ss_pred             cCChHHHHHHhcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcH
Q psy8763         393 EGNLPLHSAVHGGDFKAVELCLK----SGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTP  468 (641)
Q Consensus       393 ~~~t~l~~a~~~~~~~~~~~Ll~----~g~~~~~~~~~~~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~  468 (641)
                      +|.||||+|+..|+.+++++|++    .|++++..+..|.||||+|+..|+.+++++|++.+..     .+.....+.++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-----~~~~~~~~~~~   76 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-----PMALDRHGQTA   76 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----TTCCCTTSCCH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc-----ccccccccccc
Confidence            69999999999999999998874    8999999999999999999999999999999995544     67788889999


Q ss_pred             HHHHHhcCChhHHHHHHHcCC----CCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccc-cccCCCchhHHHhhcCC
Q psy8763         469 LHCAAMFDRCDVVQYLIDEGA----DLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILL-KDINRRNILHLLVLNGG  543 (641)
Q Consensus       469 L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~a~~~~~  543 (641)
                      ++.|....+.++++.+.....    ..+.......++|+.+.........+.|.....+... ....|.++|+.|+..+ 
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~-  155 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN-  155 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT-
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhh-
Confidence            999999999999998877643    2344556778999999999999999999988776543 4567899999999999 


Q ss_pred             CchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhC
Q psy8763         544 GHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEG  623 (641)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~  623 (641)
                                 ...+++.++++|.+++.+|..|.||||+|+.+|+.++|++|+++|++   ++.+|..|+||||+|+++|
T Consensus       156 -----------~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad---~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         156 -----------SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             -----------CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSSHH
T ss_pred             -----------hhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhCC
Confidence                       88999999999999999999999999999999999999999999999   8999999999999999999


Q ss_pred             Ccceee
Q psy8763         624 FHYSVS  629 (641)
Q Consensus       624 ~~~~~~  629 (641)
                      +.++|+
T Consensus       222 ~~divk  227 (228)
T d1k1aa_         222 VIDILR  227 (228)
T ss_dssp             HHHHHT
T ss_pred             CccccC
Confidence            988875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-28  Score=221.01  Aligned_cols=221  Identities=25%  Similarity=0.317  Sum_probs=192.5

Q ss_pred             CCCChHHHHHHcCChHHHHHHHh----ccccccCChHHHhHHHhhcCChHHHHHHhcCCHHHHHHHHHCCCCCCCCCCCC
Q psy8763         352 NGYYPIHDAAKNASSKTMEVFLQ----FGESIGCSREEMISLFAAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDL  427 (641)
Q Consensus       352 ~~~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  427 (641)
                      +|.||||+|+..++.++++.|++    .|+++        +..+..|.||||+|+..|+.+++++|+++|++++.....+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i--------n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~   73 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--------DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG   73 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS--------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC--------CccCCCCCccceehhccccccccccccccccccccccccc
Confidence            46777777777777777766664    55554        3456789999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCc-CCCCCCCHHHHHH
Q psy8763         428 STPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNV-LDKEKRSPLLLAA  506 (641)
Q Consensus       428 ~t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~  506 (641)
                      .++++.|...++.++++.+....... ....+.......++|+.+.........+.|.....+... ....+.++|+.|+
T Consensus        74 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  152 (228)
T d1k1aa_          74 QTAAHLACEHRSPTCLRALLDSAAPG-TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  152 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTT-SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             ccccccccccccccchhhhhhccccc-cccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHH
Confidence            99999999999999999887754442 333456677788999999999999999999988766443 4567899999999


Q ss_pred             hcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhc
Q psy8763         507 SRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARY  586 (641)
Q Consensus       507 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  586 (641)
                      ..+...+++.++++|.+++.+|..|.||||+|+.++            ..+++++|+++|+|++.+|..|.||||+|+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g------------~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         153 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG------------LLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT------------CHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             HhhhhhhhhhhhhhccccccccccCcchHHHHHHcC------------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Confidence            999999999999999999999999999999999999            99999999999999999999999999999999


Q ss_pred             CCHHHHH
Q psy8763         587 GRYNTVK  593 (641)
Q Consensus       587 ~~~~~v~  593 (641)
                      |+.++||
T Consensus       221 ~~~divk  227 (228)
T d1k1aa_         221 RVIDILR  227 (228)
T ss_dssp             HHHHHHT
T ss_pred             CCccccC
Confidence            9999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.2e-28  Score=202.03  Aligned_cols=153  Identities=31%  Similarity=0.388  Sum_probs=110.5

Q ss_pred             chhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCC
Q psy8763          34 AVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGY  113 (641)
Q Consensus        34 t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~  113 (641)
                      +|||+||..|++++|++|+++|+  +++.+|..|.||||+|+ .|+.+++++|+++            |++++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~--d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~------------~a~~~~~~~~~~   67 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV--NVNAQNGFGRTALQVMK-LGNPEIARRLLLR------------GANPDLKDRTGF   67 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC--CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHT------------TCCTTCCCTTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC--CcCccCCcccccccccc-ccccccccccccc------------ccccccccccCc
Confidence            67777777777777777777776  45566777777777664 5777777777777            777777777777


Q ss_pred             cHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCC-CCCcCCCCCCcHHHH
Q psy8763         114 YPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA-KISTQQFDLSTPVHL  192 (641)
Q Consensus       114 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~t~l~~  192 (641)
                      ++++.++..++.+.++.|++.+.++        +..+..|.+||++|+..++.+++++|+++|+ +++.++..|.||||+
T Consensus        68 ~~l~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~  139 (156)
T d1ihba_          68 AVIHDAARAGFLDTLQTLLEFQADV--------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL  139 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH
T ss_pred             ccccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccccccccCCCCCCHHHH
Confidence            7777777777777777777776665        3456667777777777777777777777665 666667777777777


Q ss_pred             HHHcCcHHHHHHHHhcC
Q psy8763         193 ACSQGALDIVRLMFNLQ  209 (641)
Q Consensus       193 A~~~g~~~iv~~Ll~~~  209 (641)
                      |+..|+.+++++|+++|
T Consensus       140 A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         140 ARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHhcC
Confidence            77777777777777654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=2e-30  Score=245.63  Aligned_cols=227  Identities=12%  Similarity=0.034  Sum_probs=149.5

Q ss_pred             cccccccCCCcchhhHHHhcCCHHHHHH---HHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhh
Q psy8763          23 VNTRILNNKKQAVLHLATELNKVPILLI---LLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVK   99 (641)
Q Consensus        23 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~---ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~   99 (641)
                      .+++.++..|.||||+|++.|+.+++++   |+++|+  +++..+..|+||||+||+.||.++|++|+++          
T Consensus        81 ~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~--~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~----------  148 (346)
T d2ajaa1          81 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE--IVKVIQAENYQAFRLAAENGHLHVLNRLCEL----------  148 (346)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCS--SCC--CHHHHHHHHHHHHTTCHHHHHHHHHS----------
T ss_pred             hHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCC--cccccCCCCCCHHHHHHHCCCHHHHHHHHHc----------
Confidence            3557788899999999999999888776   688887  6777889999999999999999999999999          


Q ss_pred             hcCCCcccCC--CCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCC
Q psy8763         100 DFGASLKRAC--SNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGA  177 (641)
Q Consensus       100 ~~g~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~  177 (641)
                        |++++..+  ..|.||||+|+..|+.++|++|++.|+...     ..+..+..+.||++.|+..|+.++|++|++.|+
T Consensus       149 --g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~-----~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga  221 (346)
T d2ajaa1         149 --APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA-----TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  221 (346)
T ss_dssp             --CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             --CCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCccc-----ccccccCCCcchhhHHhhcCHHHHHHHHHhCCC
Confidence              77777654  468999999999999999999999987642     112334556788889999999999999999987


Q ss_pred             CCCcCC-------CCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCC-------CCCCcHHHHHHhcCcHHHHHHH
Q psy8763         178 KISTQQ-------FDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTD-------AQKMTPLHCAAMFDRCDVVQYL  243 (641)
Q Consensus       178 ~~~~~~-------~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~-------~~~~t~L~~A~~~~~~~iv~~L  243 (641)
                      +++..+       ..+.+++..++..+..+....+........   .+..+       ....++++.|+..+..+++++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~L  298 (346)
T d2ajaa1         222 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV---FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL  298 (346)
T ss_dssp             HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSC---CCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred             CcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhccccc---HhHHhcccccccchhhhHHHHHhcCChHHHHHHH
Confidence            654321       111233333333333333222222111100   00000       1123456666666666666666


Q ss_pred             HHcCCC-----CCccCCCCCCHHHHHHHcCCcc
Q psy8763         244 IDEGAD-----LNVLDKEKRSPLLLAASRGGWK  271 (641)
Q Consensus       244 l~~g~~-----~~~~~~~~~t~l~~a~~~~~~~  271 (641)
                      ++.+..     ....+..|.||||+|++.|+.+
T Consensus       299 l~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e  331 (346)
T d2ajaa1         299 LSIPGIKALAPTATIPGDANELLRLALRLGNQG  331 (346)
T ss_dssp             HTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTT
T ss_pred             HhCcChhhhcccccCCCCCCcHHHHHHHcCcHH
Confidence            655442     1222334556666666665554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-28  Score=203.42  Aligned_cols=150  Identities=25%  Similarity=0.303  Sum_probs=84.2

Q ss_pred             HHHHHHhcCChhHHHHHHHc-CCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCch
Q psy8763         468 PLHCAAMFDRCDVVQYLIDE-GADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI  546 (641)
Q Consensus       468 ~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  546 (641)
                      .|+.|+..|+.++|+.|++. |++++..|..|+||||+|+. ++.+++++|++++.+++..+..|.+|++.++..+    
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~----   79 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTG----   79 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT----
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccc----
Confidence            35555555555555555543 45555555555555555542 4555555555555555555555555555555555    


Q ss_pred             hhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcc
Q psy8763         547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHY  626 (641)
Q Consensus       547 ~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~  626 (641)
                              +.+++++++++|++++.+|..|.||||+|++.|+.+++++|+ .|++   ++.+|.+|+||||+|++.|+.+
T Consensus        80 --------~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~---~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          80 --------FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD---LHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             --------CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC---TTCCCTTSCCHHHHHHHSCCHH
T ss_pred             --------cccccccccccccccccccCCCCeeecccccccccccccccc-cccc---ccccCCCCCCHHHHHHHcCCHH
Confidence                    555555555555555555555555555555555555555554 3444   5555555555555555555555


Q ss_pred             eeeeceee
Q psy8763         627 SVSIFQVT  634 (641)
Q Consensus       627 ~~~~l~~~  634 (641)
                      ++++|+++
T Consensus       148 iv~~Ll~h  155 (156)
T d1bd8a_         148 LVDILQGH  155 (156)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            55555543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1.6e-31  Score=253.31  Aligned_cols=166  Identities=14%  Similarity=0.163  Sum_probs=124.4

Q ss_pred             ccCCCcchhhHHHhcCCHHHHHHHHhcCCccc---------cccCCCCCchHHHHHHHcCCHHHHHH---HHhcCCCcch
Q psy8763          28 LNNKKQAVLHLATELNKVPILLILLQYKDMID---------ILQGGEHGRTALHIAAIYDFDECARI---LVSEQPECDW   95 (641)
Q Consensus        28 ~~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~---------~~~~~~~g~t~L~~A~~~g~~~iv~~---Ll~~~~~~~~   95 (641)
                      .+....+.++.+...+..++.+.+..+++..+         ++.++..|.|||++||.+|+.+++++   |++.      
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~------  115 (346)
T d2ajaa1          42 LSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS------  115 (346)
T ss_dssp             SCHHHHHHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C------
T ss_pred             hccchHHHHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC------
Confidence            34444455555666666777777766554322         23556789999999999999877765   6666      


Q ss_pred             hHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHc
Q psy8763          96 IMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKS  175 (641)
Q Consensus        96 ~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~  175 (641)
                            |++++..+..|+||||+|+++|+.++|++|+++|++++..      ..+..|.||||+|+..|+.++|++|++.
T Consensus       116 ------~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~------~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~  183 (346)
T d2ajaa1         116 ------DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA------MIQAENYHAFRLAAENGHLHVLNRLCEL  183 (346)
T ss_dssp             ------CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH------HHSHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred             ------CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc------ccccCCCChhHHHHHHhhHHHHHHHHHc
Confidence                  8999999999999999999999999999999999887311      1234588999999999999999999999


Q ss_pred             CCCCCc---CCCCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q psy8763         176 GAKIST---QQFDLSTPVHLACSQGALDIVRLMFNLQPS  211 (641)
Q Consensus       176 g~~~~~---~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~  211 (641)
                      |++...   .+.++.||++.|+..|+.++|++|++.+++
T Consensus       184 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         184 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             CCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            876532   334556788888899999999999987765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-27  Score=196.71  Aligned_cols=154  Identities=19%  Similarity=0.249  Sum_probs=146.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCCCcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhcc
Q psy8763          69 TALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNGYYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISL  148 (641)
Q Consensus        69 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  148 (641)
                      +|||.||..|+.++|++|+++            |++++.+|..|.||||+|+ .|+.+++++|+++|+++        +.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~------------g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~--------~~   61 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN------------NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP--------DL   61 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS------------CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT--------TC
T ss_pred             HHHHHHHHcCCHHHHHHHHHC------------CCCcCccCCcccccccccc-ccccccccccccccccc--------cc
Confidence            799999999999999999999            9999999999999999875 79999999999999987        56


Q ss_pred             ccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHHHHHcCcHHHHHHHHhcCCCccccccccCCCCCCcHH
Q psy8763         149 FDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPL  228 (641)
Q Consensus       149 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~t~L  228 (641)
                      .+..+.++++.++..+..+.++.|++.+.+++..+..+.+|+++|+..++.+++++|+++++..    .+.++..|.|||
T Consensus        62 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~----~~~~d~~g~TpL  137 (156)
T d1ihba_          62 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN----VGHRNHKGDTAC  137 (156)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC----TTCCCTTSCCHH
T ss_pred             ccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccCCCCCCHH
Confidence            6889999999999999999999999999999999999999999999999999999999998854    688899999999


Q ss_pred             HHHHhcCcHHHHHHHHHcC
Q psy8763         229 HCAAMFDRCDVVQYLIDEG  247 (641)
Q Consensus       229 ~~A~~~~~~~iv~~Ll~~g  247 (641)
                      |+|+..++.+++++|+++|
T Consensus       138 ~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         138 DLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.1e-27  Score=195.18  Aligned_cols=152  Identities=24%  Similarity=0.274  Sum_probs=140.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccccccCCCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhc
Q psy8763         429 TPVHLACSQGALDIVRLMFNLQPSEKLVCLNSTDAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASR  508 (641)
Q Consensus       429 t~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  508 (641)
                      +.|+.|+..|+.++|+.|++..    +.+++..|..|+||||+|+ .++.+++++|++++++++..+..|.+|+++++..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~----~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE----LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT----CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC----CCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccc
Confidence            4589999999999999999843    4458889999999999886 5888999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCC
Q psy8763         509 GGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGR  588 (641)
Q Consensus       509 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  588 (641)
                      ++.+++++++++|++++.+|..|.||||+|+..+            +.+++++|+ .|++++.+|..|+||||+|+.+|+
T Consensus        79 ~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~------------~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG------------HTAVVSFLA-AESDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT------------CHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCC
T ss_pred             ccccccccccccccccccccCCCCeeeccccccc------------ccccccccc-ccccccccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999999999999            889999887 689999999999999999999999


Q ss_pred             HHHHHHHHhc
Q psy8763         589 YNTVKKLLSS  598 (641)
Q Consensus       589 ~~~v~~Ll~~  598 (641)
                      .+++++|+++
T Consensus       146 ~~iv~~Ll~h  155 (156)
T d1bd8a_         146 QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999999976

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.7e-27  Score=198.07  Aligned_cols=149  Identities=26%  Similarity=0.249  Sum_probs=129.2

Q ss_pred             cHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCch
Q psy8763         467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI  546 (641)
Q Consensus       467 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  546 (641)
                      |||+.|++.|+.++|++|+++|++++ .+..|+||||+|+..++.++++.++.........+..+.++++.++...    
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   78 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG----   78 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT----
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccc----
Confidence            78888888888888888888888877 6788888888888888888888888888877777788888888888888    


Q ss_pred             hhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcc
Q psy8763         547 KEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHY  626 (641)
Q Consensus       547 ~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~  626 (641)
                              ..+++++++++|++++.++..|.||||+|+..|+.++|++|++.|++   ++..|..|.|||++|+.+|+.+
T Consensus        79 --------~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad---~~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          79 --------HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             --------CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             --------cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccC---CcccCCCCCCHHHHHHHcCCHH
Confidence                    78888888888888888888888899998888888888988888888   7888888889999999888888


Q ss_pred             eeeec
Q psy8763         627 SVSIF  631 (641)
Q Consensus       627 ~~~~l  631 (641)
                      ++++|
T Consensus       148 iv~lL  152 (153)
T d1awcb_         148 LAEIL  152 (153)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            88876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.3e-26  Score=191.15  Aligned_cols=150  Identities=24%  Similarity=0.274  Sum_probs=133.0

Q ss_pred             cchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCcchhHhhhcCCCcccCCCCC
Q psy8763          33 QAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFDECARILVSEQPECDWIMVKDFGASLKRACSNG  112 (641)
Q Consensus        33 ~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~g  112 (641)
                      .|||+.|++.|+.++|++|+++|+++  + .+..|.||||+|+..++.++++.++..            .......+..+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~--~-~~~~g~t~L~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~   67 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRA------------GVSRDARTKVD   67 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTT------------TCCTTCCCTTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc--c-cccCCCccccccccccccccccccccc------------ccccccccccc
Confidence            48999999999999999999999844  3 478899999999999999999999987            55556667778


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHhcccCCCchhhhhccccCCCChHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCCcHHHH
Q psy8763         113 YYPIHDAAKNASSKTMEVFLQFGESIGCSREEMISLFDAEGNLPLHSAVHGGDFKAVELCLKSGAKISTQQFDLSTPVHL  192 (641)
Q Consensus       113 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~t~l~~  192 (641)
                      .++++.++...+.+++++++.++++.        +..+..|.||||+|+..|+.++|++|++.|++++.++..|.||||+
T Consensus        68 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~  139 (153)
T d1awcb_          68 RTPLHMAASEGHANIVEVLLKHGADV--------NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDI  139 (153)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCT--------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccccccccccceeeecccccCCcc--------ccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHH
Confidence            88999999999999999999998886        4568899999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHH
Q psy8763         193 ACSQGALDIVRLM  205 (641)
Q Consensus       193 A~~~g~~~iv~~L  205 (641)
                      |+..|+.+++++|
T Consensus       140 A~~~g~~eiv~lL  152 (153)
T d1awcb_         140 SIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHhC
Confidence            9999999999876

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-26  Score=180.37  Aligned_cols=119  Identities=21%  Similarity=0.200  Sum_probs=80.3

Q ss_pred             CcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCC-chhHHHhhcCCC
Q psy8763         466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRR-NILHLLVLNGGG  544 (641)
Q Consensus       466 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~  544 (641)
                      .++||+|+..|+.+++++|+++|++++.++..|.||+|.|+ .|+.+++++|+++|++++.++..|. ||||+|+..+  
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g--   80 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG--   80 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT--
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccc--
Confidence            46677777777777777777777777766666777766553 4666777777777777666666554 4666666666  


Q ss_pred             chhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHh
Q psy8763         545 HIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLS  597 (641)
Q Consensus       545 ~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  597 (641)
                                +.+++++|+++|++++.+|..|+||||+|+++|+.+++++|+.
T Consensus        81 ----------~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 ----------FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             ----------CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ----------cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                      6666666666666666666666677776666666666666654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.6e-26  Score=180.40  Aligned_cols=106  Identities=25%  Similarity=0.239  Sum_probs=86.6

Q ss_pred             CHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCCh
Q psy8763         500 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESP  579 (641)
Q Consensus       500 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  579 (641)
                      |||++|+++|+.+++++|+++|++++.++..|.||||+|+.++            +.+++++|+++|++++.+|..|+||
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~------------~~~~~~~ll~~g~din~~d~~g~tp   71 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG------------QLEILEFLLLKGADINAPDKHHITP   71 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHS------------TTTHHHHHHHSSCTTTCCSSSCSCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccc------------ccccccccccccceeeecccccccc
Confidence            6788888888888888888888888888888888888888877            7777788888888888888888888


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHH
Q psy8763         580 LHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIAS  620 (641)
Q Consensus       580 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~  620 (641)
                      ||+|+.+|+.++|++|+++|++   ++.+|..|+|||++|.
T Consensus        72 Lh~A~~~~~~~~v~~Ll~~Gad---~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          72 LLSAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHTTTCCHHHHHHHTTCCC---SSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcCchhhhhhhhccccc---ceeeCCCCCCHHHHHh
Confidence            8888888888888888888888   7888888888888773

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-25  Score=209.28  Aligned_cols=160  Identities=23%  Similarity=0.260  Sum_probs=123.1

Q ss_pred             ccccccC-CCCCCcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCH-------HHHHHHHHcCCCccc
Q psy8763         455 LVCLNST-DAQKMTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGW-------KTVLTLVRNKANILL  526 (641)
Q Consensus       455 ~~~~~~~-~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-------~~v~~Ll~~g~~~~~  526 (641)
                      ..++|.. |..|+||||+|+..|+.++|++|+++|++++.+|..|+||||.|+..++.       +++++|   +..++.
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l---~~~~~~  172 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL---YPCLIL  172 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH---GGGGGE
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH---hhhhhh
Confidence            4456654 88999999999999999999999999999999999999999999976542       344444   345677


Q ss_pred             cccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCC-------------------------------------cc
Q psy8763         527 KDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGA-------------------------------------CI  569 (641)
Q Consensus       527 ~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~-------------------------------------~~  569 (641)
                      +|..|+||||+++..+.........+.....+++++++.+.                                     .+
T Consensus       173 ~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  252 (301)
T d1sw6a_         173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  252 (301)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCc
Confidence            88899999998887664332221111111122333333322                                     26


Q ss_pred             cccCCCCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHH
Q psy8763         570 NLKNNSNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIAS  620 (641)
Q Consensus       570 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~  620 (641)
                      |.+|..|+||||+|++.|+.++|++|+++||+   +++.|+.|.|||+||+
T Consensus       253 n~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd---~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         253 NAQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHcC
Confidence            88999999999999999999999999999999   8999999999999996

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.2e-26  Score=180.26  Aligned_cols=120  Identities=24%  Similarity=0.256  Sum_probs=113.5

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCC
Q psy8763         498 KRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNE  577 (641)
Q Consensus       498 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~  577 (641)
                      +.++||+|+.+|+.+++++|+++|++++.++..|.||+|.|+ .+            +.+++++|+++|++++.++..|.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g------------~~~~v~~Ll~~ga~~~~~~~~~~   69 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MG------------SARVAELLLLHGAEPNCADPATL   69 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TT------------CHHHHHHHHTTTCCCCCCCTTTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cc------------ccccccccccccccccccccccc
Confidence            568999999999999999999999999999999999999775 57            88999999999999999998876


Q ss_pred             -ChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeecee
Q psy8763         578 -SPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQV  633 (641)
Q Consensus       578 -t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  633 (641)
                       ||||+|+++|+.++|++|+++|++   ++..|..|+|||++|+..|+.+++++|++
T Consensus        70 ~~~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          70 TRPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccc---cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence             699999999999999999999999   89999999999999999999999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.8e-26  Score=180.16  Aligned_cols=115  Identities=24%  Similarity=0.211  Sum_probs=95.8

Q ss_pred             CcHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCc
Q psy8763         466 MTPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGH  545 (641)
Q Consensus       466 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  545 (641)
                      .|||++|++.|+.++|++|+++|++++.++..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+.++   
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~---   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG---   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT---
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcC---
Confidence            37888888888888888888888888888888888888888888888888888888888888888888888888888   


Q ss_pred             hhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHH
Q psy8763         546 IKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLL  596 (641)
Q Consensus       546 ~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  596 (641)
                               +.+++++|+++|+|++.+|..|+||||+|..    +.++.||
T Consensus        80 ---------~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~----~~i~~LL  117 (118)
T d1myoa_          80 ---------HVSCVKLLLSKGADKTVKGPDGLTALEATDN----QAIKALL  117 (118)
T ss_dssp             ---------CCHHHHHHHTTCCCSSSSSSSTCCCCCTCSS----TTTGGGG
T ss_pred             ---------chhhhhhhhcccccceeeCCCCCCHHHHHhH----HHHHHhc
Confidence                     7788888888888888888888888888742    3455554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=173.22  Aligned_cols=121  Identities=20%  Similarity=0.129  Sum_probs=100.2

Q ss_pred             cHHHHHHhcCChhHHHHHHHcCCCCCcCCCCCCCHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCch
Q psy8763         467 TPLHCAAMFDRCDVVQYLIDEGADLNVLDKEKRSPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHI  546 (641)
Q Consensus       467 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  546 (641)
                      ++|+.|+..|+.++|++|+++|+|+|.+|..|+||||+|+..++.+++++|+++|++++.+|.+|+||||+|+.++    
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g----   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN----   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT----
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhh----
Confidence            5788888888888888888888888888888888888888888888888888888888888888888888888888    


Q ss_pred             hhHHHHHHHHHHHHHHhhcCCcccccCC-CCCChHHHH--HhcCCHHHHHHHHhcC
Q psy8763         547 KEFAEEVAAVFLGENLINLGACINLKNN-SNESPLHLA--ARYGRYNTVKKLLSSE  599 (641)
Q Consensus       547 ~~~~~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A--~~~~~~~~v~~Ll~~g  599 (641)
                              +.+++++|+++|++++.++. .|+||++++  ++.|+.++|++|+..+
T Consensus        79 --------~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          79 --------NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             --------CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             --------HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence                    88888888888888887764 577877665  4667788888888654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-24  Score=172.34  Aligned_cols=120  Identities=19%  Similarity=0.214  Sum_probs=110.7

Q ss_pred             CHHHHHHhcCCHHHHHHHHHcCCCccccccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCCh
Q psy8763         500 SPLLLAASRGGWKTVLTLVRNKANILLKDINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESP  579 (641)
Q Consensus       500 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  579 (641)
                      ++|+.|+..|+.+++++|+++|++++.+|.+|+||||+|+..+            +.+++++|+++|++++.+|..|+||
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~------------~~~~~~~ll~~g~~~~~~d~~g~tp   70 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG------------HTEIVKFLVQFGVNVNAADSDGWTP   70 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT------------CHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccc------------cccccccccccccccccccccCccc
Confidence            5789999999999999999999999999999999999999999            9999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccccCC-CCCChhHHHH--HhhCCcceeeeceee
Q psy8763         580 LHLAARYGRYNTVKKLLSSERGSFIINESD-GEGLTPLHIA--SKEGFHYSVSIFQVT  634 (641)
Q Consensus       580 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d-~~g~t~l~~A--~~~~~~~~~~~l~~~  634 (641)
                      ||+|+.+|+.++|++|+++|++   ++..+ ..|+||+++|  .+.|+.+++++|+..
T Consensus        71 Lh~A~~~g~~~~v~~Ll~~ga~---v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          71 LHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHcCCC---cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999999999999999   77655 4588887765  577999999999754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.6e-24  Score=197.63  Aligned_cols=87  Identities=17%  Similarity=0.151  Sum_probs=71.6

Q ss_pred             CCcccccc-cCCCcchhhHHHhcCCHHHHHHHHhcCCccccccCCCCCchHHHHHHHcCCH-------HHHHHHHhcCCC
Q psy8763          21 SGVNTRIL-NNKKQAVLHLATELNKVPILLILLQYKDMIDILQGGEHGRTALHIAAIYDFD-------ECARILVSEQPE   92 (641)
Q Consensus        21 ~~~~~~~~-~~~~~t~L~~A~~~g~~~~v~~ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~-------~iv~~Ll~~~~~   92 (641)
                      .++++|.. |..|+||||+||..|+.++|++|+++|+  +++.+|..|+||||.||..++.       +++++|.     
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~ga--d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~-----  167 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY-----  167 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG-----
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh-----
Confidence            57788866 9999999999999999999999999998  6678899999999999987752       4444443     


Q ss_pred             cchhHhhhcCCCcccCCCCCCcHHHHHHHhCC
Q psy8763          93 CDWIMVKDFGASLKRACSNGYYPIHDAAKNAS  124 (641)
Q Consensus        93 ~~~~~~~~~g~~~~~~~~~g~t~L~~A~~~g~  124 (641)
                                ..+...+..|+||||.++..+.
T Consensus       168 ----------~~~~~~d~~g~t~lh~~~~~~~  189 (301)
T d1sw6a_         168 ----------PCLILEDSMNRTILHHIIITSG  189 (301)
T ss_dssp             ----------GGGGEECTTCCCHHHHHHHHHT
T ss_pred             ----------hhhhhcccccCCHHHHHHHHhC
Confidence                      3355678899999998886544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.4e-23  Score=168.49  Aligned_cols=123  Identities=23%  Similarity=0.183  Sum_probs=108.4

Q ss_pred             HHHHHHhcCChhHHHHHHHcCCCCCcC------CCCCCCHHHHHHhc---CCHHHHHHHHHcCCCccccccCCCchhHHH
Q psy8763         468 PLHCAAMFDRCDVVQYLIDEGADLNVL------DKEKRSPLLLAASR---GGWKTVLTLVRNKANILLKDINRRNILHLL  538 (641)
Q Consensus       468 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~a  538 (641)
                      .|..|++.++...+..++..|+|++..      +..|+||||+|++.   +..+++++|+++|++++.+|..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            456778888888888888888877654      66789999999964   678999999999999999999999999999


Q ss_pred             hhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCCCCCChHHHHHhcCCHHHHHHHHhcCCCc
Q psy8763         539 VLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNNSNESPLHLAARYGRYNTVKKLLSSERGS  602 (641)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  602 (641)
                      +..+            +.+++++|+++|++++.+|..|+||||+|++.|+.+++++|++.++..
T Consensus        89 ~~~~------------~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          89 CLTD------------NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHTT------------CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccc------------cccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999            889999999999999999999999999999999999999999988764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7.1e-23  Score=166.55  Aligned_cols=122  Identities=17%  Similarity=0.195  Sum_probs=110.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCcccc------ccCCCchhHHHhhcCCCchhhHHHHHHHHHHHHHHhhcCCcccccCC
Q psy8763         501 PLLLAASRGGWKTVLTLVRNKANILLK------DINRRNILHLLVLNGGGHIKEFAEEVAAVFLGENLINLGACINLKNN  574 (641)
Q Consensus       501 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~------~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~Ll~~g~~~~~~~~  574 (641)
                      .|..|++.+++..+..++..|++++.+      +..|.||||+|+..+...         ..+++++|+++|++++.+|.
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~---------~~~iv~~Ll~~gadin~~d~   79 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT---------SLHIVDFLVQNSGNLDKQTG   79 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTT---------THHHHHHHHHHCSCTTCCCT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCC---------CHHHHHHHHHcCCChhhhhh
Confidence            456788999999999999999987765      678999999999764221         78899999999999999999


Q ss_pred             CCCChHHHHHhcCCHHHHHHHHhcCCCccccccCCCCCChhHHHHHhhCCcceeeeceee
Q psy8763         575 SNESPLHLAARYGRYNTVKKLLSSERGSFIINESDGEGLTPLHIASKEGFHYSVSIFQVT  634 (641)
Q Consensus       575 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~  634 (641)
                      .|+||||+|+..|+.++|++|+++|++   ++.+|..|+|||++|++.|+.+++++|++.
T Consensus        80 ~g~TpLh~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          80 KGSTALHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhccccccccccccccccccccccCcc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999   899999999999999999999999999764