Psyllid ID: psy8772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLDSFTPAV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHcccccEEEcccccEEEEEEccccccccccEEEEEEEEEccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccccccHHHHHHHccccccccccccEEcHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccHcEEEcccccEEEEEEcccccccccccEEEEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHEEccccccHHHHHHHHHccccccccHccEEEcHHHHHccccHHcccccc
Coil and Loop (DISEMBL)
MDYQEEQSNEIEALdsiyygdmeilekdphvftipiqsecvddehqmncllrfqytpkypeeipiieiencdnidEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTgremfmqdksmnesDLKFIEesgdggldatesVEVNETLFQdmndldsftpav
Flexible Loop (DISEMBL)
MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAEEKRIKAeeaaeqkrfegtvvTLETFIAWKAKFDKDMAHIIFeeknkakektagkltgremfmqdksmNESDLKFIEESGDGGLDATESVEVNETlfqdmndldsftpav
Low Complexity Region (SEG)
MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYpeeipiieiencdnidedVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLkkdkeeaeekrikaeeaaeqkRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLDSFTPAV
Disordered region (IsUnstruct)
************ALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWL*****************************FEGTVVTLETFIAWKAKFDKDMAHIIFE*******************************************************************
Disordered Region (DISOPRED)
*DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS******************************VTLETFIAWKAKF******************************Q*KSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLDSFT***
Disordered Region (DISEMBL)
*********EIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTK***********************QKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLDSFTPAV
Disordered Region (DISPRO)
MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKE*TAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLDSFT***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLDSFTPAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
Q99ND9	243	RWD domain-containing pro	yes	N/A	0.927	0.893	0.425	1e-39
Q9CQK7	243	RWD domain-containing pro	yes	N/A	0.927	0.893	0.425	1e-39
Q9H446	243	RWD domain-containing pro	yes	N/A	0.914	0.880	0.417	3e-38
O94721	215	RWD domain-containing pro	yes	N/A	0.752	0.818	0.302	2e-12
Q03768	265	Protein GIR2 OS=Saccharom	yes	N/A	0.760	0.671	0.292	6e-11
Q9HGN1	1576	Serine/threonine-protein	no	N/A	0.564	0.083	0.305	1e-06
Q9P2K8	1649	Eukaryotic translation in	no	N/A	0.559	0.079	0.285	2e-06
Q9QZ05	1648	Eukaryotic translation in	no	N/A	0.594	0.084	0.25	4e-06
P15442	1659	Serine/threonine-protein	no	N/A	0.521	0.073	0.328	6e-05
Q9CPR1	188	RWD domain-containing pro	no	N/A	0.435	0.542	0.294	0.0004

>sp|Q99ND9|RWDD1_RAT RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/228 (42%), Positives = 157/228 (68%), Gaps = 11/228 (4%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPE 61
           DY EEQ NE+EAL+SIY     +L ++P  FTI + SE  +++  +   L+F Y+ KYP+
Sbjct: 3   DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 62

Query: 62  EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDK 121
           E P+ EI + +N++++   ++ + L  QA ENLGMVMIFTLV++ QE L+   DQ+K  +
Sbjct: 63  EAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRR 122

Query: 122 EEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG--K 179
           EE ++++ K  E AE+K F GT VT+E F++WKAKFD ++  I  ++K   +E+ AG  K
Sbjct: 123 EEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEI--KKKRMKEEEQAGKNK 180

Query: 180 LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDL 227
           L+G+++F  D +++ SD++F+E++G+       +VEV+E+LFQ+M+DL
Sbjct: 181 LSGKQLFETDHNLDTSDIQFLEDAGN-------NVEVDESLFQEMDDL 221

Protects DRG2 from proteolytic degradation.
Rattus norvegicus (taxid: 10116)

>sp|Q9CQK7|RWDD1_MOUSE RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/228 (42%), Positives = 156/228 (68%), Gaps = 11/228 (4%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPE 61
           DY EEQ NE+EAL+SIY     +L + P  FTI + SE  +++  +   L+F Y+ KYP+
Sbjct: 3   DYGEEQRNELEALESIYPDSFTVLSESPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 62

Query: 62  EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDK 121
           E P+ EI + +N++++   ++ + L  QA ENLGMVMIFTLV++ QE L+   DQ+K  +
Sbjct: 63  ETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRR 122

Query: 122 EEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG--K 179
           EE ++++ K  E AE+K F GT VT+E F++WKAKFD ++  I  ++K   +E+ AG  K
Sbjct: 123 EEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEI--KKKRMKEEEQAGKNK 180

Query: 180 LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDL 227
           L+G+++F  D +++ SD++F+E++G+       +VEV+E+LFQ+M+DL
Sbjct: 181 LSGKQLFETDHNLDTSDIQFLEDAGN-------NVEVDESLFQEMDDL 221

Protects DRG2 from proteolytic degradation.

Mus musculus (taxid: 10090)

>sp|Q9H446|RWDD1_HUMAN RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 153/225 (68%), Gaps = 11/225 (4%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPE 61
           DY EEQ NE+EAL+SIY     +L ++P  FTI + SE  +++  +   L+F Y+ KYP+
Sbjct: 3   DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 62

Query: 62  EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDK 121
           E P+ EI + +N++++   ++ + L  QA ENLGMVMIFTLV++ QE L+   DQ+K  +
Sbjct: 63  EAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRR 122

Query: 122 EEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG--K 179
           EE ++++ K  E AE++ F GT VT+E F+ WKAKFD ++  I  ++K   +E+ AG  K
Sbjct: 123 EEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEI--KKKRMKEEEQAGKNK 180

Query: 180 LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDM 224
           L+G+++F  D +++ SD++F+E++G+       +VEV+E+LFQ+M
Sbjct: 181 LSGKQLFETDHNLDTSDIQFLEDAGN-------NVEVDESLFQEM 218

Protects DRG2 from proteolytic degradation.

Homo sapiens (taxid: 9606)

>sp|O94721|YCF9_SCHPO RWD domain-containing protein C1393.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1393.09c PE=4 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 19/195 (9%)

Query: 10  EIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIE 69
           E E L+SIY  + + +       T PI  E  + ++  + +   Q +  YP+E+P ++I 
Sbjct: 8   EREILESIYPEEFKCINDSTFEITQPIDREESNCDNPPSLIFTCQLSEAYPDEVPDVKIT 67

Query: 70  NCDNI----DEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAE 125
             +      +E++ER LK+ +   A E LGM MIF+L S A+E  +    +  + + +A 
Sbjct: 68  FSEPHPWLGEEEIER-LKQVVAQNAEECLGMAMIFSLCSVAKEETNAILIEQSQRETQAI 126

Query: 126 EKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDK-DMAHIIFEEKNKAKEKTA------- 177
           E+R + E   E K+F GT VT+E+F  WK  FD      +  E+++K KE  +       
Sbjct: 127 EERHRKEAEQENKKFHGTPVTVESFTEWKKGFDAWRNEQLKLEQESKLKEALSAASSSNA 186

Query: 178 ------GKLTGREMF 186
                  ++TGRE+F
Sbjct: 187 RKAILEKRMTGRELF 201

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q03768|GIR2_YEAST Protein GIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIR2 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 65/243 (26%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKD-PHV-FTIPIQSE--------CVDDEHQMNCL 50
           MDY+EEQ  E+E L+SIY  ++ I+  + P + F + I+ E         +  EH +  +
Sbjct: 1   MDYKEEQKQELEVLESIYPDELRIINDEYPKIKFEVAIKLELDTGDSTSVLTKEHTI--I 58

Query: 51  LRFQYTPKYPEEIPIIEIE------------------------NCDNIDEDVER-----E 81
             F+    YP+E  +I +E                        + + + +  E       
Sbjct: 59  AEFKLPENYPDEPCLISLEAQEVALNDNEEDNEEDEDEVEYDDHGNKVLKKFENLPDLIS 118

Query: 82  LKEYL--LTQANEN-------LGMVMIFTLVSSAQE----WLSTKSDQLKKDKE-EAEEK 127
            K YL  LT   E+       LGM M F L+SS +E    W S + ++L+K  E EA+E+
Sbjct: 119 FKGYLPELTVQLESQIETDMLLGMQMCFALISSIKERCEQWYSEQLNKLEKQYELEAQER 178

Query: 128 RIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTA--GKLTGREM 185
                E  EQ +F GT VT E+++ W++KF +++     +E+++ +   A  GKLTG++M
Sbjct: 179 -----EKKEQAKFHGTKVTRESYLEWRSKFRQELK---LDERDQVRRMKAHHGKLTGKQM 230

Query: 186 FMQ 188
           F Q
Sbjct: 231 FEQ 233

Involved in ribosomal function.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9HGN1|GCN2_SCHPO Serine/threonine-protein kinase gcn2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn2 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 25/157 (15%)

Query: 4   QEEQSNEIEALDSIYYGDMEILE-------KDPHVFTIPIQSECVDDEHQMNCLLRFQYT 56
           +E Q NEIEAL +I+  D E L+        + HV+ I + S   + +      L  +  
Sbjct: 11  KEIQENEIEALKAIFMDDFEELKVRNAWNVTNGHVYCIHLCSRSANSKSIAKLDLCIELG 70

Query: 57  PKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLST---- 112
             YP   P+I+++N +N+     R L + L T+A + LG  MIF L S  Q++L+     
Sbjct: 71  RSYPYVKPVIKLQNGENVLNSQIRFLLDKLDTKAKDLLGEEMIFELASIVQDYLNDWQSD 130

Query: 113 -----------KSDQLKKDKEEAE---EKRIKAEEAA 135
                      ++ QLK D+E AE   + R+K E+ A
Sbjct: 131 LSSQFASLEEERAVQLKHDRERAEVDLQLRLKREKDA 167

Phosphorylates eIF-2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9P2K8|E2AK4_HUMAN Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Homo sapiens GN=EIF2AK4 PE=1 SV=3

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 3   YQEEQSNEIEALDSIYYGDMEILEKD--------PHVFTIPIQSECVDDEHQMNCLLRFQ 54
           Y + Q +E++AL++IY  D + L  D        P +  +        +E  +   LR +
Sbjct: 19  YPQRQDHELQALEAIYGADFQDLRPDACGPVKEPPEINLVLYPQGLTGEEVYVKVDLRVK 78

Query: 55  YTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS 114
             P YP+ +P IE++N   +  +    LK  L   A ++ G VMIF L    Q +LS  +
Sbjct: 79  CPPTYPDVVPEIELKNAKGLSNESVNLLKSRLEELAKKHCGEVMIFELAYHVQSFLSEHN 138

Query: 115 DQLKKD-KEEAEEKRIKAEE 133
               K   EE  E+R + E+
Sbjct: 139 KPPPKSFHEEMLERRAQEEQ 158

Can phosphorylate the alpha subunit of EIF2 and may mediate translational control.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9QZ05|E2AK4_MOUSE Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Mus musculus GN=Eif2ak4 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 17/156 (10%)

Query: 3   YQEEQSNEIEALDSIYYGDMEILEKD--------PHVFTIPIQSECVDDEHQMNCLLRFQ 54
           Y + Q +E++AL++IY  D + L  D        P +  +        +E  +   L+ +
Sbjct: 19  YSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELQVK 78

Query: 55  YTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS 114
             P YP+ +P IE++N   +  +    LK +L   A +  G VMIF L    Q +LS  +
Sbjct: 79  CPPTYPDVVPEIELKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN 138

Query: 115 ---------DQLKKDKEEAEEKRIKAEEAAEQKRFE 141
                    + L++  +E +++ ++A    EQ++ E
Sbjct: 139 KPPPKSFHEEMLERQAQEKQQRLLEARRKEEQEQRE 174

Can phosphorylate the alpha subunit of EIF2 and may mediate translational control.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P15442|GCN2_YEAST Serine/threonine-protein kinase GCN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN2 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 21/143 (14%)

Query: 3   YQEEQSNEIEALDSIYYGDMEIL-------EKDPHV-FTIPIQSECVDDEH-QMNCLLRF 53
           Y E Q NE+EA+ SIY  D   L       +K P + F I ++S  VD E  + +  L F
Sbjct: 11  YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRS--VDKEPVESSITLHF 68

Query: 54  QYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWL--- 110
             TP YP   P IE +N  N+ +   + LK       N + G  +IF + S  QE L   
Sbjct: 69  AMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF 128

Query: 111 -------STKSDQLKKDKEEAEE 126
                  S + D+L++ KE  E+
Sbjct: 129 QNVVNTQSLEDDRLQRIKETKEQ 151

Stimulates GCN4 translation in amino acid-starved cells by phosphorylating the alpha subunit of eIF-2 (SUI2) on 'Ser-52'.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9CPR1|RWDD4_MOUSE RWD domain-containing protein 4 OS=Mus musculus GN=Rwdd4 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYP 60
           M   E+Q  E+EAL SIY GD    E  P    +  Q    +D      L+   +T  YP
Sbjct: 1   MGANEDQEMELEALRSIYEGDNSFRELSP----VSFQYRIGEDGDPKAFLIEVSWTETYP 56

Query: 61  EEIPIIEIENCDNIDEDVERELKEYLLTQANE----NLGMVMIFTLVSSAQE 108
           +  P+I +    N    +   +K+ +L +  E    NLG  M +TL   A++
Sbjct: 57  QTAPVISMNAFFN--NTISSAVKQSILAKLQEAVEVNLGTAMTYTLFEYAKD 106

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
357608053	238	hypothetical protein KGM_15057 [Danaus p	0.901	0.886	0.540	7e-57
345489988	241	PREDICTED: RWD domain-containing protein	0.901	0.875	0.537	2e-54
332376408	238	unknown [Dendroctonus ponderosae]	0.858	0.844	0.541	7e-52
383861037	240	PREDICTED: RWD domain-containing protein	0.901	0.879	0.477	9e-52
193577803	229	PREDICTED: RWD domain-containing protein	0.918	0.938	0.517	9e-52
239789382	229	ACYPI001492 [Acyrthosiphon pisum]	0.918	0.938	0.517	9e-52
158291213	241	AGAP003063-PA [Anopheles gambiae str. PE	0.923	0.896	0.482	4e-49
443695991	232	hypothetical protein CAPTEDRAFT_124119 [	0.923	0.931	0.473	2e-48
195036426	247	GH18921 [Drosophila grimshawi] gi|193893	0.923	0.874	0.463	8e-48
312385741	239	hypothetical protein AND_00396 [Anophele	0.923	0.903	0.464	2e-47

>gi|357608053|gb|EHJ65801.1| hypothetical protein KGM_15057 [Danaus plexippus]

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 164/224 (73%), Gaps = 13/224 (5%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKDP-HVFTIPIQSECVDDEHQMNCLLRFQYTPKY 59
           MDY  EQ++E+EALDSIYYGDM+IL+ +P H F+IPI+SE  D+   + C L F YTPKY
Sbjct: 1   MDYHYEQTSEVEALDSIYYGDMQILQTEPMHKFSIPIKSEEYDEGEGLACELVFTYTPKY 60

Query: 60  PEEIPIIEIENCDNIDEDVER-ELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLK 118
           PEE+P +EI   ++ DE V++ EL ++L+ QANENLGMVMIFTLVS+ QEWL+ K D +K
Sbjct: 61  PEELPSLEINTEESFDEIVDKNELYKHLMEQANENLGMVMIFTLVSAGQEWLNEKWDSIK 120

Query: 119 KDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG 178
           KD+EEA   + KAEE AE KRFEGT VT+E+F+AW+ +F+ +M       K + + K   
Sbjct: 121 KDREEAVLLKKKAEEEAEMKRFEGTRVTVESFLAWRKQFEIEMG---IPAKREKENKDKN 177

Query: 179 KLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQ 222
           KLTG+E+FM+D ++NESDLKF        LD  ++V+V+E+LFQ
Sbjct: 178 KLTGKELFMRDTTLNESDLKF--------LDDGDAVKVDESLFQ 213

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489988|ref|XP_001604230.2| PREDICTED: RWD domain-containing protein 1-like [Nasonia vitripennis]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/225 (53%), Positives = 160/225 (71%), Gaps = 14/225 (6%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKDP-HVFTIPIQSEC--VDDEHQMNCLLRFQYTP 57
           MDY+EEQSNEIEALDSIY G++EILEK+P H F IPI+SE   +D  + + C L F YTP
Sbjct: 1   MDYKEEQSNEIEALDSIYCGELEILEKEPFHKFDIPIKSEEYELDSGNGLACRLEFTYTP 60

Query: 58  KYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQL 117
           KYP+E  I+ IE+ +N DE    +L +YL  Q  ENLG VM+FTLVS+AQEWL+ + DQ 
Sbjct: 61  KYPDEPLIVTIEDEENFDEGDAEKLMQYLEEQIKENLGTVMVFTLVSAAQEWLNVQWDQT 120

Query: 118 KKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTA 177
           K  +EE   K++KAEE AE+KRFEGT VT+ETF+ WK KF+++       +K +  EK  
Sbjct: 121 KLSREENAAKKLKAEEEAERKRFEGTRVTVETFLRWKEKFNEETG---INKKRELAEKEG 177

Query: 178 GKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQ 222
            KLTGRE+FM DK++++SDLKF        LD  ++V+V+E+LFQ
Sbjct: 178 KKLTGRELFMTDKTLDQSDLKF--------LDDGDAVKVDESLFQ 214

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376408|gb|AEE63344.1| unknown [Dendroctonus ponderosae]

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 112/207 (54%), Positives = 147/207 (71%), Gaps = 6/207 (2%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMN--CLLRFQYTPK 58
           MDY EEQ +EIEAL+SIYYGD EI+   P+ F+IPI++E  D E      C L   YTPK
Sbjct: 1   MDYVEEQKSEIEALESIYYGDFEIITAKPYKFSIPIKTEDYDPESNTGLLCDLVVTYTPK 60

Query: 59  YPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLK 118
           YP+E PI+EIEN +N +   E EL ++L  Q  ENLG VMIFTLVS+AQEWL +K +  K
Sbjct: 61  YPDEEPIVEIENAENFEGSFESELLKHLDEQIKENLGTVMIFTLVSTAQEWLHSKYEADK 120

Query: 119 KDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG 178
           K+KEE E ++I+  E AE+KRFEGT VT+ETF+ W+ +F++D      ++K +  EK   
Sbjct: 121 KNKEEREARKIQELEEAERKRFEGTRVTIETFLKWRQQFEEDFG---IDKKRELAEKEGR 177

Query: 179 KLTGREMFMQDKSMNESDLKFIEESGD 205
           KLTGRE+FM D ++NESDLKF++E GD
Sbjct: 178 KLTGRELFMTDNTLNESDLKFLDE-GD 203

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861037|ref|XP_003705993.1| PREDICTED: RWD domain-containing protein 1-like [Megachile rotundata]

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 167/226 (73%), Gaps = 15/226 (6%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKDP-HVFTIPIQSECVDDE--HQMNCLLRFQYTP 57
           MDY++EQ NEIEAL+SIY G++EIL  +P + F IPI++E  + E  + ++C L F YT 
Sbjct: 1   MDYKDEQHNEIEALESIYCGELEILATEPFYTFAIPIKTEEYEPETANGLSCRLEFTYTA 60

Query: 58  KYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQL 117
           KYP+E  II IE+ +N +E    +LKE+L+ Q NENLGMVM+FTLVS+AQEWL+ + D++
Sbjct: 61  KYPDEPLIISIEDEENFEESSAEKLKEHLIEQMNENLGMVMVFTLVSAAQEWLNVQWDKI 120

Query: 118 KKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTA 177
           K  +EE+  K+++ +E AE+K+FEGT VT+ETF++WK KFD++M +    ++ +  ++  
Sbjct: 121 KLTREESAAKKLREQEEAERKKFEGTRVTVETFLSWKEKFDEEMGYT---KRREMADREG 177

Query: 178 GKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQD 223
            KLTGRE+FM DK++++SDLKF+++         +SV+++E+LFQ+
Sbjct: 178 KKLTGRELFMTDKTLDQSDLKFLDD---------DSVKIDESLFQN 214

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193577803|ref|XP_001949892.1| PREDICTED: RWD domain-containing protein 1-like isoform 1 [Acyrthosiphon pisum]

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 120/232 (51%), Positives = 167/232 (71%), Gaps = 17/232 (7%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKDPHV-FTIPIQSECVDD-EHQ--MNCLLRFQYT 56
           MDY+EEQ NEI+ALDSIY G+M I   DP+  F IP++S+  D  +H   ++C L+F+Y 
Sbjct: 1   MDYKEEQQNEIDALDSIYCGEMIISGSDPYYQFEIPVKSDEFDSVQHDIGLSCCLKFEYV 60

Query: 57  PKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQ 116
            KYP++ PI+EIE+    +E  E ELKEYL+ QA +N+GMVMIFTLVS+AQEW++  SD 
Sbjct: 61  EKYPDDPPIVEIEDVVGFEEQ-EDELKEYLIQQAQDNVGMVMIFTLVSAAQEWMNNYSDS 119

Query: 117 LKKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKT 176
            K+ K + ++KR + E  AE KRFEGT VT+E+F+ WK  F++DM  +    K + +E+ 
Sbjct: 120 EKQRKIDDDDKRREKEMEAELKRFEGTKVTVESFLRWKFNFEEDMGVL----KKRNEEEK 175

Query: 177 AGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLD 228
             KLTGRE+FM DKS+NESDLKF+EE GD       SV+V+E+LF++++DLD
Sbjct: 176 NKKLTGRELFMTDKSLNESDLKFLEE-GD-------SVKVDESLFEEIDDLD 219

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239789382|dbj|BAH71319.1| ACYPI001492 [Acyrthosiphon pisum]

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 120/232 (51%), Positives = 167/232 (71%), Gaps = 17/232 (7%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKDPHV-FTIPIQSECVDD-EHQ--MNCLLRFQYT 56
           MDY+EEQ NEI+ALDSIY G+M I   DP+  F IP++S+  D  +H   ++C L+F+Y 
Sbjct: 1   MDYKEEQQNEIDALDSIYCGEMIISGSDPYYQFEIPVKSDEFDSVQHDIGLSCCLKFEYV 60

Query: 57  PKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQ 116
            KYP++ PI+EIE+    +E  E ELKEYL+ QA +N+GMVMIFTLVS+AQEW++  SD 
Sbjct: 61  EKYPDDPPIVEIEDVVGFEEQ-EDELKEYLIQQAQDNVGMVMIFTLVSAAQEWMNNYSDS 119

Query: 117 LKKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKT 176
            K+ K + ++KR + E  AE KRFEGT VT+E+F+ WK  F++DM  +    K + +E+ 
Sbjct: 120 EKQRKIDDDDKRREKEMEAELKRFEGTKVTVESFLRWKFNFEEDMGVL----KKRNEEEK 175

Query: 177 AGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLD 228
             KLTGRE+FM DKS+NESDLKF+EE GD       SV+V+E+LF++++DLD
Sbjct: 176 NKKLTGRELFMTDKSLNESDLKFLEE-GD-------SVKVDESLFEEIDDLD 219

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158291213|ref|XP_312750.4| AGAP003063-PA [Anopheles gambiae str. PEST] gi|157017670|gb|EAA08430.4| AGAP003063-PA [Anopheles gambiae str. PEST]

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 109/226 (48%), Positives = 155/226 (68%), Gaps = 10/226 (4%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQ---MNCLLRFQYTPK 58
           ++ E+Q NEIEALDSIY G++E+LE +PH F +PI +   D E +   ++C L F YT K
Sbjct: 4   NHHEDQCNEIEALDSIYCGELEVLETEPHKFRLPIATTEYDPEVETEGLSCKLLFTYTAK 63

Query: 59  YPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLK 118
           YP+  P++EIE   N  +  E EL E++     ENLG+ MIF+LVSSAQEWL+ K D+LK
Sbjct: 64  YPDTAPLVEIEEPSNFHDGYEEELLEHIHKTIEENLGIEMIFSLVSSAQEWLNVKYDELK 123

Query: 119 KDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG 178
              E A+E+  +  E  E K+FEGT VT+E+F+AWK KF++DM   I E K K   + A 
Sbjct: 124 NAAETAKEEAKRKVEEEEMKKFEGTRVTVESFMAWKLKFEQDMG--ITERKEKVAAE-AR 180

Query: 179 KLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDM 224
           KLTGRE+F+ D ++NESDLKF+ ++G    ++ ESV ++E+LFQ++
Sbjct: 181 KLTGRELFLSDNTLNESDLKFLMDAG----ESIESVRIDESLFQNI 222

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443695991|gb|ELT96772.1| hypothetical protein CAPTEDRAFT_124119 [Capitella teleta]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 156/224 (69%), Gaps = 8/224 (3%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPH-VFTIPIQSECVDDEHQMNCLLRFQYTPKYP 60
           DYQEEQ NE+EAL+SIY  ++ ++  +P   F +PI +E  DD   + C+L+F YT KYP
Sbjct: 3   DYQEEQQNELEALESIYPDELTVVAMEPFPCFQLPISTE--DDSECVKCVLQFTYTAKYP 60

Query: 61  EEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKD 120
           +E P++EI   +N+D+++   L EY+  Q  ENLGMVM+FT+VSS QE L +  +  +K+
Sbjct: 61  DEAPLMEIAESENVDDELLTVLLEYMKEQVRENLGMVMVFTIVSSVQERLISFLEDAEKN 120

Query: 121 KEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKL 180
           + EAEEKR+   E AE+KRFEGT V +ETF+ WKA FD +MA +   + +K K+    KL
Sbjct: 121 RIEAEEKRVWDLEEAERKRFEGTRVQIETFLVWKAGFDAEMAELKALKNSKVKD-APQKL 179

Query: 181 TGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDM 224
           TG+E+FM+D ++++SD+KF+E     G    +SV+V+E+LFQDM
Sbjct: 180 TGKELFMRDHTLDDSDVKFLERGASQG----DSVQVDESLFQDM 219

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|195036426|ref|XP_001989671.1| GH18921 [Drosophila grimshawi] gi|193893867|gb|EDV92733.1| GH18921 [Drosophila grimshawi]

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 107/231 (46%), Positives = 157/231 (67%), Gaps = 15/231 (6%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDP-HVFTIPIQSE------CVDDEHQMNCLLRFQ 54
           +Y+E+QS+EIEALDSIY G+M++LE +P H F IPI +E        D E  + C L F 
Sbjct: 4   NYKEDQSSEIEALDSIYCGEMDVLETEPFHKFQIPIATEEYYADSAEDGEKGLACKLVFT 63

Query: 55  YTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS 114
           YT KYP+E P++EIE+ +N +++ E +L E L     EN+GM MIF+LVSSAQEWL+ + 
Sbjct: 64  YTAKYPDEAPLVEIEDAENFEDNFEAQLLEQLRLTIEENIGMEMIFSLVSSAQEWLNVQW 123

Query: 115 DQLKKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKE 174
           D+ KK +E+   ++++  E AE+K+FEGT VT+ETF+ WK +F++        EKN    
Sbjct: 124 DEHKKHQEDERARKVQEVEEAERKKFEGTRVTVETFMKWKLEFEESTGITAKREKN---- 179

Query: 175 KTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMN 225
               KLTGRE+FM D ++N+SD+KF+ E+G+      E+V+++ETLFQD+ 
Sbjct: 180 NDCKKLTGRELFMCDNTLNDSDIKFLLEAGEN----IENVKIDETLFQDIG 226

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385741|gb|EFR30166.1| hypothetical protein AND_00396 [Anopheles darlingi]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/226 (46%), Positives = 158/226 (69%), Gaps = 10/226 (4%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQ---MNCLLRFQYTPK 58
           +Y+E+Q NEIEALDSIY G++E+ + +PH F +PI +   D E +   ++C L F YT K
Sbjct: 4   NYREDQLNEIEALDSIYCGELEVEQTEPHKFRLPIATTEYDTEVETEGLSCKLLFTYTEK 63

Query: 59  YPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLK 118
           YP+  P++EIE+ +N  +D E+EL E++     ENLG+ MIF+LVSSAQEWL+ K D+LK
Sbjct: 64  YPDTAPLVEIEDPENFQDDYEQELLEHIHKTIEENLGIEMIFSLVSSAQEWLNVKYDELK 123

Query: 119 KDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAG 178
              E A+E+  +  +  E K+FEGT VT+ETF+AWK +F+ D+     +EK  A+ +   
Sbjct: 124 NAAESAKEEAKRKVDEEEMKKFEGTRVTVETFMAWKTQFELDLGITERKEKILAENR--- 180

Query: 179 KLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDM 224
           KLTGRE+F+ D ++NESDLKF+ ++G    ++ ESV ++E+LFQ++
Sbjct: 181 KLTGRELFLNDNTLNESDLKFLMDAG----ESIESVRIDESLFQNI 222

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
ZFIN|ZDB-GENE-040718-270	240	rwdd1 "RWD domain containing 1	0.931	0.908	0.384	6.5e-35
MGI|MGI:1913771	243	Rwdd1 "RWD domain containing 1	0.931	0.897	0.362	2.5e-33
UNIPROTKB|Q9H446	243	RWDD1 "RWD domain-containing p	0.931	0.897	0.362	4.1e-33
WB|WBGene00012037	240	T26E3.4 [Caenorhabditis elegan	0.927	0.904	0.317	8e-21
TAIR|locus:2017532	252	AT1G51730 [Arabidopsis thalian	0.893	0.829	0.283	2.4e-12
SGD|S000002559	265	GIR2 "Highly-acidic RWD domain	0.452	0.4	0.295	3.4e-10
CGD|CAL0003315	259	orf19.6587 [Candida albicans (	0.512	0.463	0.264	1.2e-09
UNIPROTKB|Q5AGV1	259	CaO19.13940 "Putative uncharac	0.512	0.463	0.264	1.2e-09
ASPGD|ASPL0000014519	236	AN3646 [Emericella nidulans (t	0.743	0.737	0.261	2.1e-07
POMBASE|SPCC1393.09c	215	SPCC1393.09c "RWD domain prote	0.794	0.865	0.256	3.7e-06

ZFIN|ZDB-GENE-040718-270 rwdd1 "RWD domain containing 1" [Danio rerio (taxid:7955)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 88/229 (38%), Positives = 129/229 (56%)

Query:     2 DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYXX 61
             DY EEQ NE+EA++SIY     +L   P  FTI + S+  ++E  +   L+F Y  KY  
Sbjct:     3 DYGEEQRNELEAIESIYPDSFTVLSDAPTSFTITVTSDTGENEETLELTLKFTYVEKYPD 62

Query:    62 XXXXXXXXXXXXXXXXVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLXXXX 121
                                E+   L  QA ENLGMVMIFTLV++ QE L+   DQ+    
Sbjct:    63 EPPLWEIFSQENLEDSDAEEILTLLKQQAEENLGMVMIFTLVTAVQEKLNEIIDQIKSRR 122

Query:   122 XXXXXXXXXXXXXXXXXRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGK-- 179
                               F+GTVVT+ETF++WKAKF+ +M  +  ++K + +E+ +GK  
Sbjct:   123 EEEKQRKQKEAEEAEKRAFQGTVVTIETFLSWKAKFEAEMIEL--KKKRQKEEEQSGKKK 180

Query:   180 LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLD 228
             LTG+++F  D +++ SD++F+E   DGG     SVEV+E+LFQ+M+DLD
Sbjct:   181 LTGKQLFETDHNLDTSDIQFLE---DGG----NSVEVDESLFQEMDDLD 222

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1913771 Rwdd1 "RWD domain containing 1" [Mus musculus (taxid:10090)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 83/229 (36%), Positives = 129/229 (56%)

Query:     2 DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYXX 61
             DY EEQ NE+EAL+SIY     +L + P  FTI + SE  +++  +   L+F Y+ KY  
Sbjct:     3 DYGEEQRNELEALESIYPDSFTVLSESPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 62

Query:    62 XXXXXXXXXXXXXXXXVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLXXXX 121
                                ++ + L  QA ENLGMVMIFTLV++ QE L+   DQ+    
Sbjct:    63 ETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRR 122

Query:   122 XXXXXXXXXXXXXXXXXRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGK-- 179
                               F GT VT+E F++WKAKFD ++  I  ++K   +E+ AGK  
Sbjct:   123 EEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEI--KKKRMKEEEQAGKNK 180

Query:   180 LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLD 228
             L+G+++F  D +++ SD++F+E++G+       +VEV+E+LFQ+M+DL+
Sbjct:   181 LSGKQLFETDHNLDTSDIQFLEDAGN-------NVEVDESLFQEMDDLE 222

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9H446 RWDD1 "RWD domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 83/229 (36%), Positives = 129/229 (56%)

Query:     2 DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYXX 61
             DY EEQ NE+EAL+SIY     +L ++P  FTI + SE  +++  +   L+F Y+ KY  
Sbjct:     3 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 62

Query:    62 XXXXXXXXXXXXXXXXVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLXXXX 121
                                ++ + L  QA ENLGMVMIFTLV++ QE L+   DQ+    
Sbjct:    63 EAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRR 122

Query:   122 XXXXXXXXXXXXXXXXXRFEGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGK-- 179
                               F GT VT+E F+ WKAKFD ++  I  ++K   +E+ AGK  
Sbjct:   123 EEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEI--KKKRMKEEEQAGKNK 180

Query:   180 LTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLD 228
             L+G+++F  D +++ SD++F+E++G+       +VEV+E+LFQ+M+DL+
Sbjct:   181 LSGKQLFETDHNLDTSDIQFLEDAGN-------NVEVDESLFQEMDDLE 222

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00012037 T26E3.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 75/236 (31%), Positives = 120/236 (50%)

Query:     1 MDYQEEQSNEIEALDSIYYGD-MEILEKD-PHV-FTIPIQSECVDD--EHQMNCLLRFQY 55
             M +QE+Q  EIEAL++IY  + + +  +D P++  +I ++S   +D  +   +  L  ++
Sbjct:     1 MSHQEQQEQEIEALEAIYSEEEIHVASRDYPNIELSIQLKSNQYEDPTDDDFDVELGIEF 60

Query:    56 TPKYXXXXXXXXXXXXXXXXXXVER--ELKEYLLTQANENLGMVMIFTLVSSAQEWLSTK 113
             T  Y                   ER  E  + L + A ENLGMVM+F +VS+ Q+ +   
Sbjct:    61 TENYPDEIPIITLNGIEDAFTA-ERIAESIDKLRSVAEENLGMVMVFAIVSALQDEIGEL 119

Query:   114 SDQLXXXXXXXXXXXXXXXXXXXXXRFEGTVVTLETFIAWKAKFDKDM-AHIIFEEKNKA 172
              D                       +FEGTVVT +TF AWK +FD++  A I   EK + 
Sbjct:   120 VDVKKRAKEEKVEIEKEKKEAESRKKFEGTVVTPDTFRAWKDRFDEERKAEIDAAEKERL 179

Query:   173 KEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQDMNDLD 228
                 AG+LTGR++F++D ++N SD+  I      G  A + VE++E+LF D  +L+
Sbjct:   180 AS-LAGRLTGRQLFLRDATLNLSDVTLI------G--AQDEVEIDESLF-DNEELE 225

GO:0040010 "positive regulation of growth rate" evidence=IMP

TAIR|locus:2017532 AT1G51730 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 68/240 (28%), Positives = 103/240 (42%)

Query:     2 DYQEEQSNEIEALDSIYYGDM-EI------LEKDPHVFTIPIQSECVDDEHQ------MN 48
             +Y++EQ  EIEAL++I   +  EI      L      F I +  +  DDE +      + 
Sbjct:     3 EYKQEQEMEIEALEAILMDEFKEIHSSESGLNTSNRCFQITVTPQ--DDELEELAIPPVQ 60

Query:    49 CLLRFQYTPKYXXXXXXXXXXXXXXXXXXVERELKEYLLTQANENLGMVMIFTLVSSAQE 108
               L F +T  Y                      LKE L  +A+ENLGM MI+TLVSSA++
Sbjct:    61 LALVFSHTENYPDEAPLLDVKSIRGIHVSDLTILKEKLEQEASENLGMAMIYTLVSSAKD 120

Query:   109 WLSTKSDQLXXXXXXXXXXXXXXXXXXXXXRFEGTVVTLETFIAWKAKFDKDMA----HI 164
             WLS    Q                         G  VTLETF+AW+ +++ ++A     +
Sbjct:   121 WLSEHYGQDDAAEFAEVEAAKEDEVIVP----HGEPVTLETFLAWRERYEAELALERAKL 176

Query:   165 IFEEKNKA-KEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQD 223
             + E    A KEK   KLTGR+ F  +       +   +E  +   +  E ++  +  F+D
Sbjct:   177 MPESALTAPKEK---KLTGRQWF--ESGRGRGTVVIADEEDEE--EDEEDIDFEDEDFED 229

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

SGD|S000002559 GIR2 "Highly-acidic RWD domain-containing protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 116 (45.9 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
 Identities = 36/122 (29%), Positives = 62/122 (50%)

Query:    94 LGMVMIFTLVSSAQE----WLSTKSDQLXXXXXXXXXXXXXXXXXXXXXRFEGTVVTLET 149
             LGM M F L+SS +E    W S + ++L                     +F GT VT E+
Sbjct:   140 LGMQMCFALISSIKERCEQWYSEQLNKLEKQYELEAQEREKKEQA----KFHGTKVTRES 195

Query:   150 FIAWKAKFDKDMAHIIFEEKNKAKEKTA--GKLTGREMFMQDKSMNESDLKFIEESGDGG 207
             ++ W++KF +++     +E+++ +   A  GKLTG++MF Q   +   D +++EE  D  
Sbjct:   196 YLEWRSKFRQELK---LDERDQVRRMKAHHGKLTGKQMFEQGV-VGTGD-EYMEED-DAS 249

Query:   208 LD 209
             +D
Sbjct:   250 VD 251

GO:0005737 "cytoplasm" evidence=IDA

GO:0002181 "cytoplasmic translation" evidence=IGI

GO:0005844 "polysome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0003315 orf19.6587 [Candida albicans (taxid:5476)]

 Score = 115 (45.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 33/125 (26%), Positives = 62/125 (49%)

Query:    82 LKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLXXXXXXXXXXXXXXXXXXXXXRFE 141
             L   LL ++  NLG+ MIF L++  +E      ++                      +F 
Sbjct:   121 LMNKLLEESELNLGIPMIFNLITILKEESENLFNEKLNIKQCEFDEQQKIKELNEQKKFH 180

Query:   142 GTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSM-NESDLKFI 200
             GT VT ++++ W+  F K+M + +++ K + +    GKLTG+++F  +K + N++D    
Sbjct:   181 GTKVTKQSWLNWRNNFRKEMKYELYD-KQRFENMHKGKLTGKQIF--EKGLANQND-DDE 236

Query:   201 EESGD 205
             EE G+
Sbjct:   237 EEEGE 241

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005844 "polysome" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q5AGV1 CaO19.13940 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 115 (45.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 33/125 (26%), Positives = 62/125 (49%)

Query:    82 LKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLXXXXXXXXXXXXXXXXXXXXXRFE 141
             L   LL ++  NLG+ MIF L++  +E      ++                      +F 
Sbjct:   121 LMNKLLEESELNLGIPMIFNLITILKEESENLFNEKLNIKQCEFDEQQKIKELNEQKKFH 180

Query:   142 GTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSM-NESDLKFI 200
             GT VT ++++ W+  F K+M + +++ K + +    GKLTG+++F  +K + N++D    
Sbjct:   181 GTKVTKQSWLNWRNNFRKEMKYELYD-KQRFENMHKGKLTGKQIF--EKGLANQND-DDE 236

Query:   201 EESGD 205
             EE G+
Sbjct:   237 EEEGE 241

GO:0003674 "molecular_function" evidence=ND

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

ASPGD|ASPL0000014519 AN3646 [Emericella nidulans (taxid:162425)]

 Score = 132 (51.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 50/191 (26%), Positives = 77/191 (40%)

Query:     4 QEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMN------CLLRFQYTP 57
             +E+Q  E E LDSI+    EI +     + I I  +  D++ Q         +L+  Y  
Sbjct:     3 REDQIEEREVLDSIF--PEEITDVSDTSYRISITLDAPDNDEQSQEAEPPILILQVTYPE 60

Query:    58 KYXXXXXXXXXXXXXXX------XXXVERE-LKEYLLTQANENLGMVMIFTLVSSAQEWL 110
             +Y                         +R+ L E L     EN+GM M+FTLVS+ +E  
Sbjct:    61 EYPDVAPELDLTAPTNAPKHPRLDISEDRDRLLEALQPTIEENMGMAMVFTLVSALKESA 120

Query:   111 STKSDQLXXXXXXXXXXXXXXXXXXXXXRFEGTVVTLETFIAWKAKFDKDMAHIIFE--E 168
                  +                      +F+GT V  ETF+ W  KF K+M   + +  E
Sbjct:   121 ELLMVERVNAVHAVQEMEAAKAEEEENRKFQGTAVNRETFLEWLDKFKKEMEEEVRKKRE 180

Query:   169 KNKAKEKTAGK 179
             + +A+EK A K
Sbjct:   181 EKEAEEKKANK 191

GO:0003674 "molecular_function" evidence=ND

GO:0002181 "cytoplasmic translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005844 "polysome" evidence=IEA

POMBASE|SPCC1393.09c SPCC1393.09c "RWD domain protein, implicated in translation" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 122 (48.0 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 50/195 (25%), Positives = 77/195 (39%)

Query:    10 EIEALDSIYYGDMEILEKDPHVFTIPI---QSECVDDEHQM--NCLLRFQYTPKYXXXXX 64
             E E L+SIY  + + +       T PI   +S C D+   +   C L   Y  +      
Sbjct:     8 EREILESIYPEEFKCINDSTFEITQPIDREESNC-DNPPSLIFTCQLSEAYPDEVPDVKI 66

Query:    65 XXXXXXXXXXXXXVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLXXXXXXX 124
                          +ER LK+ +   A E LGM MIF+L S A+E  +    +        
Sbjct:    67 TFSEPHPWLGEEEIER-LKQVVAQNAEECLGMAMIFSLCSVAKEETNAILIEQSQRETQA 125

Query:   125 XXXXXXXXXXXXXXRFEGTVVTLETFIAWKAKFDK-DMAHIIFEEKNKAKEK-TAGKLTG 182
                           +F GT VT+E+F  WK  FD      +  E+++K KE  +A   + 
Sbjct:   126 IEERHRKEAEQENKKFHGTPVTVESFTEWKKGFDAWRNEQLKLEQESKLKEALSAASSSN 185

Query:   183 REMFMQDKSMNESDL 197
                 + +K M   +L
Sbjct:   186 ARKAILEKRMTGREL 200

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99ND9	RWDD1_RAT	No assigned EC number	0.4254	0.9273	0.8930	yes	N/A
O94721	YCF9_SCHPO	No assigned EC number	0.3025	0.7521	0.8186	yes	N/A
Q9H446	RWDD1_HUMAN	No assigned EC number	0.4177	0.9145	0.8806	yes	N/A
Q9CQK7	RWDD1_MOUSE	No assigned EC number	0.4254	0.9273	0.8930	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	234
pfam05773	113	pfam05773, RWD, RWD domain	5e-25
smart00591	107	smart00591, RWD, domain in RING finger and WD repe	8e-19

>gnl|CDD|218742 pfam05773, RWD, RWD domain

 Score = 94.7 bits (236), Expect = 5e-25
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 4/113 (3%)

Query: 2   DYQEEQSNEIEALDSIYYGDME--ILEKDPHVFTIPIQSECVDDEHQMN--CLLRFQYTP 57
           + +E Q  E+EAL+SIY  + E  + E  P  FTI ++    + E       +L F    
Sbjct: 1   ESKELQEEELEALESIYPDEFEDEVKESSPPTFTIKLKLLTSEAESSPLVSLVLTFTLPE 60

Query: 58  KYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWL 110
            YP+E P I + +   + +  + +L + L   A ENLG VMIF L+   QE L
Sbjct: 61  DYPDEPPKISLSSPWLLRDQDKLQLLKELEELAEENLGEVMIFELIEWLQENL 113

This domain was identified in WD40 repeat proteins and Ring finger domain proteins. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. Its function requires an interaction with GCN1 via the domain at its N-terminus, which is termed the RWD domain after three major RWD-containing proteins: RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases. The structure forms an alpha + beta sandwich fold consisting of two layers: a four-stranded antiparallel beta-sheet, and three side-by-side alpha-helices. Length = 113

>gnl|CDD|214735 smart00591, RWD, domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

 Score = 78.2 bits (193), Expect = 8e-19
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)

Query: 10  EIEALDSIYYGDMEILEKDPHV--FTIPIQSECVDDEHQMNCL-LRFQYTPKYPEEIPII 66
           E+EAL+SIY  D E++++D  +   TI +     + E Q   L L+ +    YP+E P I
Sbjct: 1   ELEALESIYPEDFEVIDEDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPI 60

Query: 67  EIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLST 112
            + N + + ++   EL + L   A ENLG VMIF LV   QE+LS 
Sbjct: 61  SLLNSEGLSDEQLAELLKKLEEIAEENLGEVMIFELVEKLQEFLSE 106

Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
KOG4018|consensus	215		100.0
smart00591	107	RWD domain in RING finger and WD repeat containing	99.89
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	99.87
KOG4445|consensus	368		99.48
KOG1763|consensus	343		99.23
KOG1814|consensus	445		98.99
KOG1035|consensus	1351		98.97
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.23
KOG0309|consensus	1081		97.1
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	96.02
KOG0416|consensus	189		95.41
PLN00172	147	ubiquitin conjugating enzyme; Provisional	95.34
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	95.08
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	94.73
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	93.75
KOG0418|consensus	200		93.54
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	93.16
KOG0417|consensus	148		92.59
KOG0419|consensus	152		91.72
KOG0420|consensus	184		89.72
KOG0421|consensus	175		86.2
KOG0427|consensus	161		86.06
KOG0425|consensus	171		85.53
KOG0422|consensus	153		84.14
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	80.63
KOG3299|consensus	206		80.55

>KOG4018|consensus

Probab=100.00  E-value=3.2e-49  Score=330.73  Aligned_cols=213  Identities=41%  Similarity=0.625  Sum_probs=187.1

Q ss_pred             CChHHHHHHHHHHHHhhcCCCe-eeccCCCcEEEEEeccCCCCCCCcc-eEEEEEEeCCCCCCCCCeEEEecCCCCCHHH
Q psy8772           1 MDYQEEQSNEIEALDSIYYGDM-EILEKDPHVFTIPIQSECVDDEHQM-NCLLRFQYTPKYPEEIPIIEIENCDNIDEDV   78 (234)
Q Consensus         1 M~~~EeQ~~ElEaLeSIY~de~-~~~~~~p~~f~I~i~~~~~~~~~~~-~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~   78 (234)
                      ||+.|+|++|+|||+|||||+| ++.+..|++|+|.|....+..+++. ++.|.|++|++||+++|.|.+....++....
T Consensus         1 Ms~~EeQe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~~~~~~~~~~~   80 (215)
T KOG4018|consen    1 MSQYEEQEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGENDEPKGSFILVFSLTENYPDEAPLIEAFENENLEDAE   80 (215)
T ss_pred             CCcHHHHHHHHHHHHHhccchhhhhhccCCccceeeeecccccCCCccccEEEEEEccCCCCCCCcceeccccccccHHH
Confidence            9977999999999999999999 6667788889999988776545555 9999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHHHhHHhHHHHHHHHHHHHHHHHhhccCCcccCHhhHHHhHHhHH
Q psy8772          79 ERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKKDKEEAEEKRIKAEEAAEQKRFEGTVVTLETFIAWKAKFD  158 (234)
Q Consensus        79 ~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~gT~VT~E~F~~Wk~~f~  158 (234)
                      +..|+..|...+++|+||+|||+||+.+|++|.+++++.+.+  +.++...++.+++++++|+|||||+++|++||.+|+
T Consensus        81 i~~i~~~l~~~aeenLGmaMiftLvss~ke~l~e~~~q~~~~--e~~e~~~~~~ee~e~~kfhgt~VT~esfl~Wk~~fe  158 (215)
T KOG4018|consen   81 IEGILEKLQQEAEENLGMAMIFTLVSSAKEELNEIVEQQKAA--EQREQEAREAEEEERKKFHGTPVTLESFLEWKLKFE  158 (215)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccccCCceehhhhHHHHHhhh
Confidence            999999999999999999999999999999999999999888  566677778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHhhhcCCCCchhhhccCCCCCcchHHHhhhhCCCCCCCCCceeeehhcccc
Q psy8772         159 KDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKFIEESGDGGLDATESVEVNETLFQD  223 (234)
Q Consensus       159 ~e~~~~~~~~~~~~~~~~~~~ltGrqlFe~~~~l~~sd~~~~~~~~~~~~~~~~~v~vd~~lf~~  223 (234)
                      +++...+... +++.....+++||||+|++|+.+..+|..+..       +.+++|++|+++|+|
T Consensus       159 ~el~~~~~k~-~~~~~~~~~k~tgRQ~f~~d~~~~~~~~~~~~-------da~~~~e~~e~~f~d  215 (215)
T KOG4018|consen  159 EELLQIKAKV-KKRLQALAKKLTGRQLFETDHKGDRSDIWNLV-------DAVKDVEIDESLFQD  215 (215)
T ss_pred             hhhhhhhhhh-hhHHHHHhhhHHHHHHHHhcccCChhhhHHhh-------hhhhhhhcchhhccC
Confidence            9985554211 11122357999999999999999999988766       467888899999985

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=99.89  E-value=1.5e-22  Score=153.81  Aligned_cols=103  Identities=36%  Similarity=0.584  Sum_probs=92.3

Q ss_pred             HHHHHHhhcCCCeeeccCCCc--EEEEEeccCCCC-CCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy8772          10 EIEALDSIYYGDMEILEKDPH--VFTIPIQSECVD-DEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYL   86 (234)
Q Consensus        10 ElEaLeSIY~de~~~~~~~p~--~f~I~i~~~~~~-~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~~~L   86 (234)
                      |++||+|||++++..++..+.  .|+|++.+.... ....+++.|+|.+|++||..+|.|.+.+..||+...+..|...|
T Consensus         1 EieaL~sIy~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~~~~l~~~l   80 (107)
T smart00591        1 ELEALESIYPEDFEVIDEDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNSEGLSDEQLAELLKKL   80 (107)
T ss_pred             ChHHHHhhccceeEEecCCCCccEEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            799999999999988877655  888988765431 24578999999999999999999999998899999999999999


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHH
Q psy8772          87 LTQANENLGMVMIFTLVSSAQEWLST  112 (234)
Q Consensus        87 ~~~~ee~lG~~mIf~lv~~lqE~l~~  112 (234)
                      .++++++.|++|||++++++|+++.+
T Consensus        81 ~~~~~e~~g~~~if~~v~~~~e~l~~  106 (107)
T smart00591       81 EEIAEENLGEVMIFELVEKLQEFLSE  106 (107)
T ss_pred             HHHHHHhCCCEEhhHHHHHHHHHHhc
Confidence            99999999999999999999999975

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=99.87  E-value=1.4e-21  Score=149.52  Aligned_cols=108  Identities=33%  Similarity=0.467  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHhhcCCCe-eeccCCCcEEEEEeccC--CCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHH
Q psy8772           3 YQEEQSNEIEALDSIYYGDM-EILEKDPHVFTIPIQSE--CVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVE   79 (234)
Q Consensus         3 ~~EeQ~~ElEaLeSIY~de~-~~~~~~p~~f~I~i~~~--~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~   79 (234)
                      +.+.|.+|++||+|||++++ ......+..+++++.+.  .......+.+.|+|+||++||..+|.|.+.+..++.....
T Consensus         2 ~~e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~~~~~~~   81 (113)
T PF05773_consen    2 CEEQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKNSRNEQI   81 (113)
T ss_dssp             HHHHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESSSHCHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCCCCHHHH
Confidence            57899999999999999998 33344567888888432  2223567899999999999999999999988877777999


Q ss_pred             HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Q psy8772          80 RELKEYLLTQANENL-GMVMIFTLVSSAQEWL  110 (234)
Q Consensus        80 ~~L~~~L~~~~ee~l-G~~mIf~lv~~lqE~l  110 (234)
                      ..|.+.|...++++. |++|||++++|+|++|
T Consensus        82 ~~l~~~l~~~~~~~~~G~~~i~~ii~~~qe~~  113 (113)
T PF05773_consen   82 EKLNKELEQIAEENRQGEPCIFQIIEWLQENL  113 (113)
T ss_dssp             HHHHHHHHHHHHHSTTTS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcCHHHHHHHHHHhhC
Confidence            999999999999999 9999999999999986

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>KOG4445|consensus

Probab=99.48  E-value=7.1e-14  Score=122.95  Aligned_cols=104  Identities=16%  Similarity=0.209  Sum_probs=86.0

Q ss_pred             HHHHHHhhcCCCeeec----cCCCcEEEEEeccCCCC--CCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHHHH
Q psy8772          10 EIEALDSIYYGDMEIL----EKDPHVFTIPIQSECVD--DEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELK   83 (234)
Q Consensus        10 ElEaLeSIY~de~~~~----~~~p~~f~I~i~~~~~~--~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~L~   83 (234)
                      |.+.+++||.|++.+.    +..+.++.+.+.|-+++  ....++|+|.++.|++||.++|.|.|.+++||++.++..|+
T Consensus         2 e~~~~e~~~ld~i~~~~~~~s~~~~~i~~t~hpit~eedesqyvcvtl~m~vs~gYP~esPtvtl~nPRGl~d~~~~~i~   81 (368)
T KOG4445|consen    2 ESADGEIEALDSIWDGVHVESKLEASIRYTKHPITSEEDESQYVCVTLEMTVSEGYPAESPTVTLSNPRGLGDPEFREIQ   81 (368)
T ss_pred             cccchhhHhhhhHhhccCCCCCChhhheeeecccccccccceeEEEEEEEecCCCCCCcCCceEecCCCCCCcHHHHHHH
Confidence            4556666666664433    23345666666665553  35689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q psy8772          84 EYLLTQANENLGMVMIFTLVSSAQEWLSTK  113 (234)
Q Consensus        84 ~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~  113 (234)
                      ..|+.++++|+||||||.|++.++|+|.+.
T Consensus        82 ~~~~~iikq~~g~pii~~lie~~~e~LT~n  111 (368)
T KOG4445|consen   82 RQIQEIIKQNSGMPIICQLIEHCSEFLTEN  111 (368)
T ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHcccC
Confidence            999999999999999999999999999873

>KOG1763|consensus

Probab=99.23  E-value=1.2e-11  Score=108.74  Aligned_cols=101  Identities=21%  Similarity=0.310  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHhhcc--CCcccCHhhHHHhHHhHHHHHHHHHHHHHhHHHhhhcCCCCchhhhccCCCCCcchHHH
Q psy8772         122 EEAEEKRIKAEEAAEQKRF--EGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQDKSMNESDLKF  199 (234)
Q Consensus       122 ~~~~~~~~~~~~e~e~~~~--~gT~VT~E~F~~Wk~~f~~e~~~~~~~~~~~~~~~~~~~ltGrqlFe~~~~l~~sd~~~  199 (234)
                      +...+-..++-|+.+|+++  +.||||.++|.+||.+..+|++...+.....+...++.-||||+||++++.|+.+|+.-
T Consensus       204 ek~~eISlEe~IE~ER~~L~~nlT~~T~e~F~~WKk~k~~er~~k~~~~~~~~k~~gk~~~sGRElF~~~~dl~~dd~~e  283 (343)
T KOG1763|consen  204 EKQDEISLEELIEKERAALGPNLTPLTEETFKAWKKRKIRERKEKLAAEKAERKKVGKSNMSGRELFESNADLVNDDDEE  283 (343)
T ss_pred             cccccccHHHHHHHHHHhcCCCCccccHHHHHHHHHhhHHHHHHHHHHHHHHhhhhccCCCchHHHHhhchhhccCchhh
Confidence            3444556667788899876  79999999999999999888877763322222111122299999999999999999644


Q ss_pred             hhh-----hCCCCCCCCCceeeehhccc
Q psy8772         200 IEE-----SGDGGLDATESVEVNETLFQ  222 (234)
Q Consensus       200 ~~~-----~~~~~~~~~~~v~vd~~lf~  222 (234)
                      .++     +.++.|+.+..-++|.+.|+
T Consensus       284 ~~d~e~~~~~ee~d~~~k~~e~d~~~~d  311 (343)
T KOG1763|consen  284 AGDLEYTEYSEETDEEAKVKEADAPIFD  311 (343)
T ss_pred             ccchhhhhhccchhhhhhhhhccccccc
Confidence            331     33444444445567888883

>KOG1814|consensus

Probab=98.99  E-value=2.1e-09  Score=98.55  Aligned_cols=106  Identities=21%  Similarity=0.237  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHhhcCCC-eeeccC-----------CCcEEEEEeccCCC----C-C--------CCcceEEEEEEeCC
Q psy8772           3 YQEEQSNEIEALDSIYYGD-MEILEK-----------DPHVFTIPIQSECV----D-D--------EHQMNCLLRFQYTP   57 (234)
Q Consensus         3 ~~EeQ~~ElEaLeSIY~de-~~~~~~-----------~p~~f~I~i~~~~~----~-~--------~~~~~l~L~~~~p~   57 (234)
                      .++.|++||+||+||||+. |...+.           -|..|.+.+.+...    + +        ...+++.|.|.||+
T Consensus         5 n~~~qedEL~AL~siy~e~~~~~~~~~~~~~~~ir~ni~v~f~~~~~~~vnie~~s~~~~~f~~~~~~lPpivlkf~LP~   84 (445)
T KOG1814|consen    5 NRELQEDELEALESIYPENEFRKVSYWEDGEFEIRLNIEVNFEILYSPKVNIEGTSDSMDLFSLPLDHLPPIVLKFHLPN   84 (445)
T ss_pred             HHHHHHHHHHHHHHhccccccccccccccccceeEeeeeccceeecccccccccccccccccccccccCCCeeeeeecCC
Confidence            4899999999999999987 554332           12344444444321    0 0        23578999999999


Q ss_pred             CCCCCC-CeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHH
Q psy8772          58 KYPEEI-PIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSD  115 (234)
Q Consensus        58 ~YP~~~-P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~  115 (234)
                      .||..+ |.+.| +..||+..++..|...      +..|....|.|.+++++--..++.
T Consensus        85 ~YPs~spP~f~l-~s~Wmn~~q~~~lc~~------el~~i~~~~q~m~~l~~~~~s~l~  136 (445)
T KOG1814|consen   85 DYPSVSPPKFEL-KSYWMNPDQKSALCSK------ELRLIEELNQMMDFLKESTISILN  136 (445)
T ss_pred             ccccCCCCceee-ehcccCHHHhhhccch------hhccceeHHHHHHHHHHHHHHHHH
Confidence            999975 55555 6789999998877776      567889999999999987777653

>KOG1035|consensus

Probab=98.97  E-value=9.4e-11  Score=118.94  Aligned_cols=108  Identities=31%  Similarity=0.400  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHhhcCCCeeeccCCC----cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHH
Q psy8772           3 YQEEQSNEIEALDSIYYGDMEILEKDP----HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDV   78 (234)
Q Consensus         3 ~~EeQ~~ElEaLeSIY~de~~~~~~~p----~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~   78 (234)
                      +.+.|.+|+|||.|||+++|+-+...-    +.+-|.+..-    ....++.|++.+++.||...|.+.+....|+++.+
T Consensus         6 ~~eiQ~~e~ea~k~i~~~d~e~l~~r~~w~~~i~l~~l~s~----~~~~~~~lh~~~~~~yp~~kp~i~lk~~~~~~d~~   81 (1351)
T KOG1035|consen    6 NYEIQENELEALKAIYMDDFEELKARWAWVCHILLIALRSC----SLKLSGRLHVKCKRKYPYSKPEIKLKDHQGVSDED   81 (1351)
T ss_pred             HHHHHHHHHHhhcccccchHHHHHHHHhhhhhhhhhhhhhh----hHHHhhHhhhhhccccCCCCccccccccccchHHH
Confidence            679999999999999999988765321    2333333221    23578999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhH
Q psy8772          79 ERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS  114 (234)
Q Consensus        79 ~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~  114 (234)
                      +..|...|.+++....|++|||.|.+.+||+|.++.
T Consensus        82 i~~L~~~l~~~~~~~~G~~~i~eLa~~vqefl~~~~  117 (1351)
T KOG1035|consen   82 IELLSNELTALAKTLRGEVMIAELASIVQEFLKDHQ  117 (1351)
T ss_pred             HHHHHHHHHHhhccccccEEeeeHhhhhHHHHhccC
Confidence            999999999999999999999999999999998864

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.23  E-value=0.00033  Score=60.54  Aligned_cols=72  Identities=21%  Similarity=0.212  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhcc--CCcccCHhhHHHhHHhHHHHHHHHHHHHHhHHHhhhcCCCCch-hhhccCCCCCcchH
Q psy8772         126 EKRIKAEEAAEQKRF--EGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGR-EMFMQDKSMNESDL  197 (234)
Q Consensus       126 ~~~~~~~~e~e~~~~--~gT~VT~E~F~~Wk~~f~~e~~~~~~~~~~~~~~~~~~~ltGr-qlFe~~~~l~~sd~  197 (234)
                      +-..++-++-+|.++  ..||||.|+|..|+.-.+-.....+++..-+++..+...+||+ ++|+.+..++-+|.
T Consensus       193 eislEefIE~eR~~L~~~LTP~TeenFk~Wkd~~~~r~lkq~ee~~s~Rk~~gr~~~~k~~e~FEt~~d~~~ddv  267 (299)
T COG5252         193 EISLEEFIELERQSLPEKLTPLTEENFKEWKDGRRLRILKQKEEKESARKVKGRATGTKGVELFETRRDLFKDDV  267 (299)
T ss_pred             cccHHHHHHHHhccCCCcCCcccHHHHHHhccchHHHHHHHHHHHHhcccchhhhhhccchhhhhcccccccccc
Confidence            344556677788766  7999999999999975443322221110000001122345555 89999988877664

>KOG0309|consensus

Probab=97.10  E-value=0.006  Score=60.51  Aligned_cols=101  Identities=13%  Similarity=0.188  Sum_probs=76.2

Q ss_pred             HHHHHHHHhhcCCC-eeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCC-CCeEEEecCCCCCHHHHHHHHHH
Q psy8772           8 SNEIEALDSIYYGD-MEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEE-IPIIEIENCDNIDEDVERELKEY   85 (234)
Q Consensus         8 ~~ElEaLeSIY~de-~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~-~P~i~l~~~~~L~~~~~~~L~~~   85 (234)
                      .+|+-++--=|+.= |+.++....+++|.|.+.....+..+-+.++|.||.+||.. +|.+.+..+..++..+.+.|.+.
T Consensus       426 geE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~s~~t~~~~~~~l~~  505 (1081)
T KOG0309|consen  426 GEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENPSTITSTMKAKLLKI  505 (1081)
T ss_pred             HhHHhHhhccccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecCccccHHHHHHHHHH
Confidence            35666665556543 66666556788888876544335578899999999999997 59999999999999999999999


Q ss_pred             HHHHHHhcC--CchHHHHHHHHHHH
Q psy8772          86 LLTQANENL--GMVMIFTLVSSAQE  108 (234)
Q Consensus        86 L~~~~ee~l--G~~mIf~lv~~lqE  108 (234)
                      |..++.+.+  |.-|+=..+..|--
T Consensus       506 L~~i~~q~v~s~~yClepClr~l~g  530 (1081)
T KOG0309|consen  506 LKDIALQKVKSGQYCLEPCLRQLVG  530 (1081)
T ss_pred             HHHHHHHHhhcCchHHHHHHHHHhc
Confidence            999998753  66665555555554

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=96.02  E-value=0.064  Score=43.70  Aligned_cols=71  Identities=14%  Similarity=0.086  Sum_probs=47.2

Q ss_pred             CChHHHHHHHHHHHHhhcCCCeeecc--CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           1 MDYQEEQSNEIEALDSIYYGDMEILE--KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         1 M~~~EeQ~~ElEaLeSIY~de~~~~~--~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      |+-...-..|+..|..--+..+.+..  .+-..+.+.|.+..+..-..-.+.+.|.+|++||..||.+.+...
T Consensus         1 ~~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~   73 (152)
T PTZ00390          1 MSISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK   73 (152)
T ss_pred             CcHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC
Confidence            55444556788888865555555432  233577777764332112345788999999999999999998663

>KOG0416|consensus

Probab=95.41  E-value=0.48  Score=39.33  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=64.7

Q ss_pred             HHHHHHhhcCCC-eeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC---CCCCHHHHHHHHHH
Q psy8772          10 EIEALDSIYYGD-MEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC---DNIDEDVERELKEY   85 (234)
Q Consensus        10 ElEaLeSIY~de-~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~---~~L~~~~~~~L~~~   85 (234)
                      |.++..-|-.+- .+++.+.-..|.|.+....+..-+.---+++|.+|.+||-.+|.|-+.+.   .|+...--...+..
T Consensus         9 d~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDV   88 (189)
T KOG0416|consen    9 DTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDV   88 (189)
T ss_pred             hhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHH
Confidence            444444444332 55666555788888876544322344568899999999999999877552   34444434456667


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHhH
Q psy8772          86 LLTQANENLGMVMIFTLVSSAQEWLSTKS  114 (234)
Q Consensus        86 L~~~~ee~lG~~mIf~lv~~lqE~l~~~~  114 (234)
                      |++.|      .-+|+|+.-..-||-+++
T Consensus        89 iNQtW------Sp~yDL~NIfetfLPQLL  111 (189)
T KOG0416|consen   89 INQTW------SPLYDLVNIFETFLPQLL  111 (189)
T ss_pred             Hhhhh------hHHHHHHHHHHHHhHHHh
Confidence            77776      357888887777777765

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=95.34  E-value=0.17  Score=40.90  Aligned_cols=66  Identities=14%  Similarity=0.122  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhhcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|..--+..+.+  ...+-..+.+.|....+..-..-.+.+.|.+|++||..+|.+.+...
T Consensus         5 Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   72 (147)
T PLN00172          5 RIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK   72 (147)
T ss_pred             HHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC
Confidence            3446777776543333333  22334677777764332112345789999999999999999998663

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=95.08  E-value=0.11  Score=41.22  Aligned_cols=64  Identities=14%  Similarity=0.168  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhcCCCeee--ccC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEI--LEK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~--~~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..|+..|+.--+..+.+  ..+ +...+.+.|.+..+..-..-.+.+.|.+|++||..+|.|.+.+.
T Consensus         3 ~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~   69 (140)
T PF00179_consen    3 QKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP   69 (140)
T ss_dssp             HHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccc
Confidence            35677776555555443  232 56777777765322113356789999999999999999999763

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=94.73  E-value=0.25  Score=39.26  Aligned_cols=63  Identities=13%  Similarity=0.102  Sum_probs=41.2

Q ss_pred             HHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772           8 SNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      ..|+..|+.--+..+.+.  ..+...+.+.|.+..+..-..-.+.+.|.+|++||..+|.|.+.+
T Consensus         5 ~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~   69 (141)
T cd00195           5 QKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVT   69 (141)
T ss_pred             HHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeC
Confidence            356666665555555433  234467777776542211224578899999999999999999965

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=93.75  E-value=0.47  Score=37.82  Aligned_cols=63  Identities=14%  Similarity=0.103  Sum_probs=40.4

Q ss_pred             HHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           9 NEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         9 ~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .|+..|..--+..+.+.  .. +...+.+.+....+..-....+.+.|.+|++||..+|.+.+...
T Consensus         5 ~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~   70 (145)
T smart00212        5 KELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK   70 (145)
T ss_pred             HHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC
Confidence            46666665445555433  22 44566666653222112345789999999999999999998664

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0418|consensus

Probab=93.54  E-value=0.23  Score=41.73  Aligned_cols=69  Identities=12%  Similarity=0.041  Sum_probs=46.4

Q ss_pred             ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC---CCCCHHHHHHHHHHHHHHHHhc
Q psy8772          25 LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC---DNIDEDVERELKEYLLTQANEN   93 (234)
Q Consensus        25 ~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~---~~L~~~~~~~L~~~L~~~~ee~   93 (234)
                      ++++...++-+|....+-.-..-.+.|.|++|.+||..||.+.+...   .|+|...-......|..+|--.
T Consensus        31 vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~s  102 (200)
T KOG0418|consen   31 VNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKDQWAAS  102 (200)
T ss_pred             ccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhcccchh
Confidence            33444455555554322112356789999999999999999987653   3567776677777888887544

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.16  E-value=0.71  Score=37.79  Aligned_cols=105  Identities=11%  Similarity=0.040  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCH--HHH
Q psy8772           5 EEQSNEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDE--DVE   79 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~--~~~   79 (234)
                      ..-..|++.|+.=-+..+...  .+ +-..+.+.|....+..-++-.+.|.+.||++||..||.|.+.+.-+.+.  ..-
T Consensus         8 ~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G   87 (153)
T COG5078           8 KRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSG   87 (153)
T ss_pred             HHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCC
Confidence            344567777775544444433  11 2245666665433222346688999999999999999999977543221  111


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q psy8772          80 RELKEYLLTQANENLGMVMIFTLVSSAQEWLST  112 (234)
Q Consensus        80 ~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~  112 (234)
                      ......|.+.|.=   .-.|=+++-.|+..|.+
T Consensus        88 ~vCLdIL~~~WsP---~~~l~sILlsl~slL~~  117 (153)
T COG5078          88 NVCLDILKDRWSP---VYTLETILLSLQSLLLS  117 (153)
T ss_pred             CChhHHHhCCCCc---cccHHHHHHHHHHHHcC
Confidence            2234444444432   22334555555555544

>KOG0417|consensus

Probab=92.59  E-value=1.4  Score=35.70  Aligned_cols=41  Identities=12%  Similarity=0.151  Sum_probs=32.4

Q ss_pred             cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772          30 HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus        30 ~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      ..|+..|....+..-++-.+.|.|.+|++||-.||.|.+..
T Consensus        31 ~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~T   71 (148)
T KOG0417|consen   31 FHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLT   71 (148)
T ss_pred             eeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeec
Confidence            56888887655432345679999999999999999998865

>KOG0419|consensus

Probab=91.72  E-value=1.1  Score=35.81  Aligned_cols=27  Identities=19%  Similarity=0.395  Sum_probs=23.6

Q ss_pred             CcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772          45 HQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus        45 ~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      +...+.|.++|++.||+.||.+.+.+.
T Consensus        49 e~gtFkLtl~FteeYpnkPP~VrFvs~   75 (152)
T KOG0419|consen   49 EGGTFKLTLEFTEEYPNKPPTVRFVSK   75 (152)
T ss_pred             CCceEEEEEEcccccCCCCCeeEeeee
Confidence            356899999999999999999998774

>KOG0420|consensus

Probab=89.72  E-value=1.3  Score=36.89  Aligned_cols=64  Identities=14%  Similarity=0.060  Sum_probs=41.1

Q ss_pred             EEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCH--HHHHHHHHHHHHHHHhcCC
Q psy8772          31 VFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDE--DVERELKEYLLTQANENLG   95 (234)
Q Consensus        31 ~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~--~~~~~L~~~L~~~~ee~lG   95 (234)
                      .|+++|.|..|= -..-.+.+.|+.|+.||.+||.+.....-+-+.  .+-+.....|.+-|.=-++
T Consensus        61 ~~elti~PdEGy-Y~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRedW~P~ln  126 (184)
T KOG0420|consen   61 EFELTITPDEGY-YQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLN  126 (184)
T ss_pred             eEEEEEccCcce-ecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHhcCccccc
Confidence            599999887651 123568889999999999999987765332221  1223345556666654343

>KOG0421|consensus

Probab=86.20  E-value=2  Score=34.71  Aligned_cols=47  Identities=11%  Similarity=0.097  Sum_probs=34.0

Q ss_pred             CcceEEEEEEeCCCCCCCCCeEEEecCCCCCHH--HHHHHHHHHHHHHH
Q psy8772          45 HQMNCLLRFQYTPKYPEEIPIIEIENCDNIDED--VERELKEYLLTQAN   91 (234)
Q Consensus        45 ~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~--~~~~L~~~L~~~~e   91 (234)
                      ......|...||.+||..+|.|.+.++.+.+.-  +-+..+..|.+.|.
T Consensus        74 egl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWS  122 (175)
T KOG0421|consen   74 EGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWS  122 (175)
T ss_pred             cCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHH
Confidence            356788889999999999999999887654432  22345566666663

>KOG0427|consensus

Probab=86.06  E-value=5.7  Score=31.69  Aligned_cols=66  Identities=11%  Similarity=0.104  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhhcCCCeeec-cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL-EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~-~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-+-|+-.++.==|..|..- +++-..+.|-+..-.+---..-...|.|.||+.||-++|.+-+...
T Consensus        19 RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~   85 (161)
T KOG0427|consen   19 RLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP   85 (161)
T ss_pred             HHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence            34467888887777776543 2333566666654332111245789999999999999999877654

>KOG0425|consensus

Probab=85.53  E-value=2.2  Score=35.04  Aligned_cols=44  Identities=9%  Similarity=0.026  Sum_probs=29.1

Q ss_pred             cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCC
Q psy8772          30 HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDN   73 (234)
Q Consensus        30 ~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~   73 (234)
                      ..+.|.|-...+---..--+.-+..||.+||..||.+.+.+..|
T Consensus        36 f~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mw   79 (171)
T KOG0425|consen   36 FEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMW   79 (171)
T ss_pred             eEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhc
Confidence            34555544322111234567888999999999999999977443

>KOG0422|consensus

Probab=84.14  E-value=4.5  Score=32.61  Aligned_cols=42  Identities=14%  Similarity=0.176  Sum_probs=31.6

Q ss_pred             CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772          28 DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus        28 ~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      +-..++..|-|...- -+.-.+.|.|.+|.+||--||.|.+..
T Consensus        31 nll~wt~llipd~pp-Y~kgaF~l~I~fp~eYPFKPP~i~f~t   72 (153)
T KOG0422|consen   31 NLLKWTGLLIPDKPP-YNKGAFRLEIDFPVEYPFKPPKIKFKT   72 (153)
T ss_pred             cceeEEeEecCCCCC-ccCcceEEEeeCCCCCCCCCCeeeeee
Confidence            336777777665431 235679999999999999999998754

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=80.63  E-value=1.4  Score=35.60  Aligned_cols=28  Identities=25%  Similarity=0.447  Sum_probs=17.4

Q ss_pred             cceEEEEEEeCCCCCCCCCeEEEecCCC
Q psy8772          46 QMNCLLRFQYTPKYPEEIPIIEIENCDN   73 (234)
Q Consensus        46 ~~~l~L~~~~p~~YP~~~P~i~l~~~~~   73 (234)
                      ...+.|.|..|.+||.++|.|.+-...|
T Consensus        74 kYEF~~eFdIP~tYP~t~pEi~lPeLdG  101 (161)
T PF08694_consen   74 KYEFDLEFDIPVTYPTTAPEIALPELDG  101 (161)
T ss_dssp             EEEEEEEEE--TTTTTS----B-GGGTT
T ss_pred             eEEEeeecCCCccCCCCCcceeccccCC
Confidence            4678999999999999999999966554

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG3299|consensus

Probab=80.55  E-value=1.4  Score=37.56  Aligned_cols=57  Identities=16%  Similarity=0.233  Sum_probs=42.4

Q ss_pred             CCCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHHH
Q psy8772          58 KYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQ  116 (234)
Q Consensus        58 ~YP~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~~  116 (234)
                      .||+++|+|.-....++...+..-|...+  .+-.+.|..|++.|++.+++.+.....+
T Consensus         2 ~yps~ap~i~e~~~v~~~~~~~~~l~~a~--~~~s~~~~~l~~~~~~~~~~~~~~~~~~   58 (206)
T KOG3299|consen    2 DYPSSAPTIKELVGVEKELAKRKLLSNAL--VYISEIGDSLFLLWVEDPRDVLNKRASK   58 (206)
T ss_pred             CCCCCCCcHhHhhhHHHHHHHHHhhhhhh--HHHHhhhhhhhhhhhccHHHHHHHhHhh
Confidence            69999887665555556666666566666  6667788999999999999999776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	234
2ebm_A	128	Solution Structure Of The Rwd Domain Of Human Rwd D		3e-15

>pdb|2EBM|A Chain A, Solution Structure Of The Rwd Domain Of Human Rwd Domain Containing Protein 1 Length = 128

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 64/116 (55%)
Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYXX 61
           DY EEQ NE+EAL+SIY     +L ++P  FTI + SE  +++  +   L+F Y+ KY  
Sbjct: 10  DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 69
Query: 62  XXXXXXXXXXXXXXXXVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQL 117
                              ++ + L  QA ENLGMVMIFTLV++ QE L+   DQ+
Sbjct: 70  EAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQI 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	1e-29
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	3e-26
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	8e-26
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	1e-23
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	1e-22
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	1e-10
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	1e-09

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128

 Score =  106 bits (266), Expect = 1e-29
 Identities = 52/117 (44%), Positives = 79/117 (67%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPE 61
           DY EEQ NE+EAL+SIY     +L ++P  FTI + SE  +++  +   L+F Y+ KYP+
Sbjct: 10  DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPD 69

Query: 62  EIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLK 118
           E P+ EI + +N++++   ++ + L  QA ENLGMVMIFTLV++ QE L+   DQ+K
Sbjct: 70  EAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIK 126

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Length = 137

 Score = 98.2 bits (244), Expect = 3e-26
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKD-------PHVFTIPIQSECVDDEHQMNCL-LRF 53
            Y + Q +E++AL++IY  D + L  D       P    + +  + +  E     + LR 
Sbjct: 10  SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRV 69

Query: 54  QYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLS 111
           +  P YP+ +P I+++N   +  +    LK +L   A +  G VMIF L    Q +LS
Sbjct: 70  KCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLS 127

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128

 Score = 96.4 bits (240), Expect = 8e-26
 Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEIL-----EKDPHVFTIPIQSECVDDEHQMNCLLRFQYT 56
              E    E+  L +I+    E       E D  VF I  ++E   D   +   L F   
Sbjct: 7   GMAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDA-DIPLELVFHLP 65

Query: 57  PKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQ 116
             YP  +P I I N + +       +KE LL QA   L   M+  LV   Q+ L     Q
Sbjct: 66  VNYPSCLPGISI-NSEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHILSQ 124

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Length = 128

 Score = 91.1 bits (226), Expect = 1e-23
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKD----PHVFTIPIQSECVDDEHQMNC--LLRFQY 55
           +      +E+E L+SIY  ++++++ +    P    I +     +D+        L  Q 
Sbjct: 8   EEDWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQV 67

Query: 56  TPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLS 111
             +YP E+P I I N   + ++    + + L   A   LG  M++ L+   +E LS
Sbjct: 68  PAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILS 123

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Length = 138

 Score = 88.6 bits (219), Expect = 1e-22
 Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 9/130 (6%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPH--------VFTIPIQSECVDDEHQMNCLLRF 53
            Y E Q NE+EA+ SIY  D   L K           +F I ++S    +  + +  L F
Sbjct: 10  QYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSV-DKEPVESSITLHF 68

Query: 54  QYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTK 113
             TP YP   P IE +N  N+ +   + LK       N + G  +IF + S  QE L   
Sbjct: 69  AMTPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF 128

Query: 114 SDQLKKDKEE 123
            + +     E
Sbjct: 129 QNVVNTQSLE 138

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3 Length = 152

 Score = 57.4 bits (138), Expect = 1e-10
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 28/149 (18%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKDPHV---------------------FTIPIQSE 39
            +  E Q  E++ L S++ G+ E++  D                        FTI +  +
Sbjct: 7   GEQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLD 66

Query: 40  CVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANEN-LGMVM 98
            V DE      L      KYP  +P I +     +    + +L   L     ++  G V 
Sbjct: 67  -VSDEKMAMFSLACILPFKYPAVLPEITV-RSVLLSRSQQTQLNTDLTAFLQKHCHGDVC 124

Query: 99  IFTLVSSAQEWLSTKSDQLKKDKEEAEEK 127
           I        EW+   +         +   
Sbjct: 125 ILNAT----EWVREHASGYVSRDTSSSGP 149

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3 Length = 154

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 22/143 (15%)

Query: 1   MDYQEEQSNEIEALDSIYYGDMEILEKDPHVF----------------TIPIQSECVDDE 44
            +  + Q  E+E L S++    E+  +D +                   I        +E
Sbjct: 13  KESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEE 72

Query: 45  HQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANEN-LGMVMIFTLV 103
            ++   L+      YP     +       +D   +  L + L +       G + +   +
Sbjct: 73  PKVKIDLQVTMPHSYPYLALQLFG-RSSELDRHQQLLLNKGLTSYIGTFDPGELCVCAAI 131

Query: 104 SSAQEWLSTKSDQLKKDKEEAEE 126
               +WL   S     +++    
Sbjct: 132 ----QWLQDNSASYFLNRKLVSG 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	99.97
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	99.95
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	99.95
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	99.94
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	99.93
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	99.89
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	99.89
4a9a_C	142	Translation machinery-associated protein 46; DRG-D	99.06
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	96.31
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	95.65
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	95.65
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	95.6
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	95.58
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	95.46
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	95.38
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	95.32
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	95.29
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	95.22
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	95.22
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	95.15
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	95.04
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	95.04
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	95.03
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	94.95
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	94.91
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	94.89
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	94.88
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	94.86
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	94.79
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	94.75
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	94.66
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	94.61
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	94.6
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	94.54
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	94.37
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	94.27
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	94.22
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	94.17
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	94.01
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	93.94
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	93.92
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	93.9
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	93.61
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	93.59
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	93.59
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	93.46
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	93.44
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	93.12
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	92.99
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	92.87
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	92.48
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	92.39
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	91.94
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	91.91
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	91.6
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	91.55
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	90.72
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	90.46
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	90.1
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	89.87
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	88.94

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=198.73  Aligned_cols=118  Identities=44%  Similarity=0.722  Sum_probs=109.0

Q ss_pred             ChHHHHHHHHHHHHhhcCCCeeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHHHHH
Q psy8772           2 DYQEEQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERE   81 (234)
Q Consensus         2 ~~~EeQ~~ElEaLeSIY~de~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~~~~   81 (234)
                      ++.++|.+|++||+||||++|++++..|.+|+|+|.+..+++...+++.|+|+||++||+++|.|.+.+..||+..++..
T Consensus        10 ~~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~~~l~~~~~~~   89 (128)
T 2ebm_A           10 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSD   89 (128)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEEESSCCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEcCCCCCHHHHHH
Confidence            48999999999999999999999987789999999987654445689999999999999999999998888999999999


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHHHhHH
Q psy8772          82 LKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQLKK  119 (234)
Q Consensus        82 L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~~~~~  119 (234)
                      |.+.|.+++++++|++|||+||+|+|++|.+++++.++
T Consensus        90 L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~~~~~~~  127 (128)
T 2ebm_A           90 ILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT  127 (128)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999987765

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=99.95  E-value=1e-27  Score=190.57  Aligned_cols=110  Identities=34%  Similarity=0.435  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHhhcCCCeeeccC--------CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCC
Q psy8772           3 YQEEQSNEIEALDSIYYGDMEILEK--------DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNI   74 (234)
Q Consensus         3 ~~EeQ~~ElEaLeSIY~de~~~~~~--------~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L   74 (234)
                      |.++|.+|++||+||||++|++++.        .+.+|+|+|.+..+ ....+++.|+|+||++||+++|.|.+.+..||
T Consensus        11 ~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~~~L   89 (138)
T 2yz0_A           11 YYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNVQNV   89 (138)
T ss_dssp             HHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECCCSC
T ss_pred             hHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecCCCC
Confidence            7899999999999999999998875        25899999987653 23468999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q psy8772          75 DEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTK  113 (234)
Q Consensus        75 ~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~  113 (234)
                      +..++..|++.|..++++++|++|||+||+|+|++|.++
T Consensus        90 ~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~  128 (138)
T 2yz0_A           90 MDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF  128 (138)
T ss_dssp             CSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=99.95  E-value=1.6e-27  Score=188.97  Aligned_cols=114  Identities=29%  Similarity=0.506  Sum_probs=101.6

Q ss_pred             CChHHHHHHHHHHHHhhcCCCeeeccCC-------CcEEEEEeccCCCC-CCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772           1 MDYQEEQSNEIEALDSIYYGDMEILEKD-------PHVFTIPIQSECVD-DEHQMNCLLRFQYTPKYPEEIPIIEIENCD   72 (234)
Q Consensus         1 M~~~EeQ~~ElEaLeSIY~de~~~~~~~-------p~~f~I~i~~~~~~-~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~   72 (234)
                      |+|.++|.+|++||+|||+|+|++++..       |.+|+|+|.+...+ ....+++.|+|+||++||+++|.|.+.+..
T Consensus         9 ~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~~   88 (137)
T 1ukx_A            9 ESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNAK   88 (137)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCCcEEEecCC
Confidence            4589999999999999999999988742       68999999875422 123589999999999999999999998889


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhH
Q psy8772          73 NIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS  114 (234)
Q Consensus        73 ~L~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~  114 (234)
                      ||+..++..|++.|.+++++++|++|||+||+|||++|.++.
T Consensus        89 ~L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~  130 (137)
T 1ukx_A           89 GLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN  130 (137)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999998764

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=99.94  E-value=1.2e-26  Score=182.09  Aligned_cols=110  Identities=25%  Similarity=0.445  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHhhcCCCeeeccC----CCcEEEEEeccCCCC--CCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHH
Q psy8772           4 QEEQSNEIEALDSIYYGDMEILEK----DPHVFTIPIQSECVD--DEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDED   77 (234)
Q Consensus         4 ~EeQ~~ElEaLeSIY~de~~~~~~----~p~~f~I~i~~~~~~--~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~   77 (234)
                      .+.|.+|++||+|||+++|++++.    .|..|+|+|.+..++  ....+++.|+|+||++||+++|.|.+.+.+||+..
T Consensus        10 ~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~~~L~~~   89 (128)
T 2day_A           10 DWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDE   89 (128)
T ss_dssp             CCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEESSCHH
T ss_pred             HHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcCCCCCHH
Confidence            478999999999999999998874    578999999876542  12468999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q psy8772          78 VERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTK  113 (234)
Q Consensus        78 ~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~  113 (234)
                      ++..|++.|.+++++++|++|||+||+++|++|.+.
T Consensus        90 ~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~  125 (128)
T 2day_A           90 QIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSGP  125 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999754

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.93  E-value=2.2e-26  Score=180.79  Aligned_cols=112  Identities=27%  Similarity=0.346  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHHhhcCC--CeeeccCC---CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHH
Q psy8772           3 YQEEQSNEIEALDSIYYG--DMEILEKD---PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDED   77 (234)
Q Consensus         3 ~~EeQ~~ElEaLeSIY~d--e~~~~~~~---p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~   77 (234)
                      +.+.|.+|++||+|||++  +|++++..   +.+|+|+|.+.... +..+++.|+|+||++||+++|.|.+. ..||++.
T Consensus         8 ~~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~-~~~L~~~   85 (128)
T 2ebk_A            8 MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISIN-SEQLTRA   85 (128)
T ss_dssp             SCHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCC-CSSSCHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEE-hhhCCHH
Confidence            678999999999999998  89988743   47999999876532 23578999999999999999999997 6899999


Q ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhHHH
Q psy8772          78 VERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKSDQ  116 (234)
Q Consensus        78 ~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~~~  116 (234)
                      ++..|++.|.+++++++|++|||+||+|+|+++.+++++
T Consensus        86 ~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~~  124 (128)
T 2ebk_A           86 QCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHILSQ  124 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999988754

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=99.89  E-value=1.8e-23  Score=168.92  Aligned_cols=114  Identities=20%  Similarity=0.244  Sum_probs=96.1

Q ss_pred             ChHHHHHHHHHHHHhhcC--CCeeeccC----------------CC---cEEEEEeccCCCCCCCcceEEEEEEeCCCCC
Q psy8772           2 DYQEEQSNEIEALDSIYY--GDMEILEK----------------DP---HVFTIPIQSECVDDEHQMNCLLRFQYTPKYP   60 (234)
Q Consensus         2 ~~~EeQ~~ElEaLeSIY~--de~~~~~~----------------~p---~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP   60 (234)
                      +|.+.|.+||+||+||||  |+|++++.                .|   ..|+|+|.+.... ...+++.|+|+||++||
T Consensus         8 ~~~e~Q~~EleaL~SIY~~~de~~~~~~~~~~~l~~~~~~~~~~~p~~~~~f~I~l~~~~~~-~~~~~l~L~v~lP~~YP   86 (152)
T 2dax_A            8 EQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVSD-EKMAMFSLACILPFKYP   86 (152)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSSSEEESCHHHHHHHHHHHHHTCCCCCCSCEEEEEEEEEECST-TCEEEEEEEEEECSSTT
T ss_pred             chHHHHHHHHHHHHHhCCCCCeEEEcCchhHHHHHHHhhcccccCCCCceEEEEEEecCCCC-ccCceEEEEEECCCCCC
Confidence            388999999999999999  88988763                12   4899998764432 34578999999999999


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHhHHHh
Q psy8772          61 EEIPIIEIENCDNIDEDVERELKEYLLTQAN-ENLGMVMIFTLVSSAQEWLSTKSDQL  117 (234)
Q Consensus        61 ~~~P~i~l~~~~~L~~~~~~~L~~~L~~~~e-e~lG~~mIf~lv~~lqE~l~~~~~~~  117 (234)
                      +++|.|.+.+. +++..+...|...|.+.++ +++|++|||+|++|||+++.+++.+.
T Consensus        87 ~~~P~i~l~~~-~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~~~~~  143 (152)
T 2dax_A           87 AVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSRD  143 (152)
T ss_dssp             SSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred             CCCCeEEEEcc-cCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcc
Confidence            99999999764 6888888999998888875 58999999999999999999887543

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=99.89  E-value=8.9e-23  Score=165.49  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHHHHhhcC--CCeeeccC----------------CC--cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCC
Q psy8772           3 YQEEQSNEIEALDSIYY--GDMEILEK----------------DP--HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEE   62 (234)
Q Consensus         3 ~~EeQ~~ElEaLeSIY~--de~~~~~~----------------~p--~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~   62 (234)
                      +.|.|.+||+||+||||  ++|++.+.                .|  ..|+|+|....+    ...+.|+|+||++||++
T Consensus        15 ~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~~----~~~i~L~v~lP~~YP~~   90 (154)
T 2daw_A           15 SLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEP----KVKIDLQVTMPHSYPYL   90 (154)
T ss_dssp             HHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETTT----TEEEEEEEEECSSTTSS
T ss_pred             hHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecCCC----CceEEEEEEcCCCCCCC
Confidence            68999999999999999  88988641                14  478877765432    24899999999999999


Q ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhHHH
Q psy8772          63 IPIIEIENCDNIDEDVERELKEYLLTQANEN-LGMVMIFTLVSSAQEWLSTKSDQ  116 (234)
Q Consensus        63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~-lG~~mIf~lv~~lqE~l~~~~~~  116 (234)
                      +|.|.+.+. ||+..+...|.+.|.+.++++ +|++|||+|++|||+++.+++.+
T Consensus        91 ~P~i~l~~~-~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~~l~~  144 (154)
T 2daw_A           91 ALQLFGRSS-ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLN  144 (154)
T ss_dssp             CCEEEEECS-SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHHHCC
T ss_pred             CCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhC
Confidence            999999875 899999999999999999876 79999999999999999888754

>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.06  E-value=7.1e-11  Score=93.16  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=41.3

Q ss_pred             HHHHHHHHhhcc---CCcccCHhhHHHhHHhHHHHHHHHHHHHHhHHHhhhcCCCCchhhhccC
Q psy8772         129 IKAEEAAEQKRF---EGTVVTLETFIAWKAKFDKDMAHIIFEEKNKAKEKTAGKLTGREMFMQD  189 (234)
Q Consensus       129 ~~~~~e~e~~~~---~gT~VT~E~F~~Wk~~f~~e~~~~~~~~~~~~~~~~~~~ltGrqlFe~~  189 (234)
                      .++-++.+|+++   +.||||+|+|++||+++..+++...   ++   .+...++|||++|..+
T Consensus        19 lEe~iE~ER~kL~~~nlTpVT~EtF~~WKk~k~~ek~~~~---~~---~~~kk~~tGRei~~~g   76 (142)
T 4a9a_C           19 LEEFIETERGKLDKSKLTPITIANFAQWKKDHVIAKINAE---KK---LSSKRKPTGREIILKM   76 (142)
T ss_dssp             HHHHHHTTGGGSCGGGCCCCCHHHHHHHHHHHHHHHHHHH---HH---HHTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHH---HH---HHHhhhhhhHHHHHhc
Confidence            445677888877   4699999999999999888775443   11   1235779999999875

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=96.31  E-value=0.019  Score=44.71  Aligned_cols=67  Identities=13%  Similarity=0.172  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhhcCCCeeec----cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEIL----EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~----~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|+.=-+..+.+.    .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~   95 (136)
T 2a7l_A           25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE   95 (136)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence            344578888876444444421    2233566777764332112345789999999999999999998764

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=95.65  E-value=0.097  Score=41.19  Aligned_cols=67  Identities=10%  Similarity=0.101  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhhcCCCeeecc--CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEILE--KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~~--~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|+.--+..+.+..  ++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus         7 ~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (152)
T 2aak_A            7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR   75 (152)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC
Confidence            4455788888865555554432  233455566653222112345789999999999999999998764

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=95.65  E-value=0.087  Score=42.41  Aligned_cols=67  Identities=9%  Similarity=0.107  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhhcCCCeeecc--CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEILE--KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~~--~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -.-..|+..|+.--+..+.+..  .+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus         7 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~   75 (169)
T 1ayz_A            7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE   75 (169)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC
Confidence            3445789888875555554432  233456666653222112345789999999999999999999764

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=95.60  E-value=0.12  Score=41.03  Aligned_cols=68  Identities=10%  Similarity=0.029  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772           5 EEQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD   72 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~   72 (234)
                      ..-..|+..|+.--+..+.+.  ..+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+....
T Consensus        16 ~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   85 (158)
T 1zdn_A           16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI   85 (158)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCc
Confidence            345578888886555555443  23446777777643221123457899999999999999999997753

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=95.58  E-value=0.076  Score=41.94  Aligned_cols=67  Identities=18%  Similarity=0.226  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhhcCCCeee-c--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           4 QEEQSNEIEALDSIYYGDMEI-L--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         4 ~EeQ~~ElEaLeSIY~de~~~-~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ...-..|+..|+.--+..+.+ .  ..+...+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus         6 ~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~P~~t-pyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (155)
T 1wzv_A            6 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQP-PYHLKAFNLRISFPPEYPFKPPMIKFTTK   75 (155)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCST-TGGGEEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEcCCCC-CCCCCEEEEEEECCCCCCCCCCcceeeCC
Confidence            344567888888765555554 2  2344677777664322 12345789999999999999999998764

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=95.46  E-value=0.12  Score=41.04  Aligned_cols=67  Identities=9%  Similarity=0.080  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHh---hcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDS---IYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeS---IY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|+.   .-+..+.+  ..++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        11 ~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   82 (159)
T 2bep_A           11 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   82 (159)
T ss_dssp             HHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence            344567888875   22334433  23344677777763222112345789999999999999999999763

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=95.38  E-value=0.17  Score=40.02  Aligned_cols=68  Identities=9%  Similarity=0.149  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772           5 EEQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD   72 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~   72 (234)
                      ..-..|+..|+.-=+..+.+.  .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+....
T Consensus        12 ~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   81 (156)
T 2e2c_A           12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPC   81 (156)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCc
Confidence            445578888876434445442  23446777777633221123457899999999999999999997643

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=95.32  E-value=0.1  Score=41.91  Aligned_cols=66  Identities=12%  Similarity=0.098  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.--+..+.+.  .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        25 RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~   92 (166)
T 2ayv_A           25 RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTK   92 (166)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccC
Confidence            44568888876544445442  2345677777763322112345799999999999999999998764

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=95.29  E-value=0.11  Score=39.69  Aligned_cols=66  Identities=9%  Similarity=0.050  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.==+..+.+  ..++-..+.+.|....+-.-..-.+.+.|.+|++||..+|.|.+...
T Consensus        10 RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~   77 (125)
T 2fo3_A           10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK   77 (125)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCC
Confidence            3456788887543344433  22344677777663322112345789999999999999999998764

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=95.22  E-value=0.16  Score=40.53  Aligned_cols=67  Identities=10%  Similarity=0.064  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhhcCCCeeec--c-CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEIL--E-KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~--~-~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|+.-=+..+.+.  . .+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+.+.
T Consensus         7 ~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~   76 (165)
T 2ucz_A            7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS   76 (165)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC
Confidence            344568888876444445542  2 244566666653322112345789999999999999999999764

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=95.22  E-value=0.18  Score=39.03  Aligned_cols=67  Identities=9%  Similarity=0.035  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhhcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|+.==+..+.+  ..++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        23 ~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~   91 (136)
T 2h2y_A           23 YRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK   91 (136)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCC
Confidence            34456888887543344433  22344677777763322112345789999999999999999998764

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=95.15  E-value=0.15  Score=40.30  Aligned_cols=66  Identities=14%  Similarity=0.097  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-=+..+.+.  .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus         9 RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   76 (154)
T 2c2v_B            9 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK   76 (154)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC
Confidence            34578888876544445442  2344677777753222112345789999999999999999999764

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=95.04  E-value=0.17  Score=40.24  Aligned_cols=66  Identities=9%  Similarity=-0.083  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-=+..+.+.  .+ +...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus         7 RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (164)
T 3h8k_A            7 RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCE   75 (164)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCC
Confidence            34567888876544455442  23 44677777763322112345788999999999999999998764

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=95.04  E-value=0.11  Score=40.85  Aligned_cols=66  Identities=12%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-=+..+.+.  .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus         8 RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (150)
T 1z2u_A            8 RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR   75 (150)
T ss_dssp             HHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecC
Confidence            34568888876544445432  2233566666663322112345789999999999999999998764

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=95.03  E-value=0.13  Score=41.24  Aligned_cols=66  Identities=12%  Similarity=0.096  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-=+..+.+.  .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        23 RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~   90 (165)
T 2c4o_A           23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR   90 (165)
T ss_dssp             HHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecC
Confidence            44568888876433444432  3344677777763322112345789999999999999999998764

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=94.95  E-value=0.12  Score=40.52  Aligned_cols=64  Identities=16%  Similarity=0.120  Sum_probs=41.3

Q ss_pred             HHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..|+..|+.-=+..+.+.  .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus         7 ~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   72 (149)
T 2r0j_A            7 TKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK   72 (149)
T ss_dssp             HHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccC
Confidence            467888876433444432  2233566666653222112345789999999999999999999764

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=94.91  E-value=0.17  Score=39.59  Aligned_cols=66  Identities=12%  Similarity=0.137  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhhcCCCeee--ccC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEI--LEK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~--~~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-=+..+.+  ..+ +...+.+.|....+..-..-.+.|.|.+|++||..||.|.+...
T Consensus         5 RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   73 (149)
T 1fxt_A            5 RIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK   73 (149)
T ss_dssp             HHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence            3446788887543344433  223 34577777753322112345789999999999999999999763

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=94.89  E-value=0.13  Score=40.70  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-=+..+.+.  .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus         9 RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   76 (155)
T 1jat_A            9 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK   76 (155)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecc
Confidence            34568888876434444432  2233566666653322112346799999999999999999998764

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=94.88  E-value=0.16  Score=39.85  Aligned_cols=66  Identities=12%  Similarity=0.078  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-=+..+.+.  .++...+.+.|....+..-..-.+.|.|.+|++||..+|.|.+...
T Consensus         8 RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   75 (151)
T 4gpr_A            8 RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTK   75 (151)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecC
Confidence            34567888876444444432  3344677777774322112345789999999999999999998764

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=94.86  E-value=0.16  Score=40.92  Aligned_cols=65  Identities=9%  Similarity=0.034  Sum_probs=43.4

Q ss_pred             HHHHHHHHHhhcCCCeeec--c-CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL--E-KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~--~-~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -+.|+..|+.-=+..+.+.  . .+...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus        22 L~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~   89 (172)
T 2awf_A           22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE   89 (172)
T ss_dssp             HHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCC
Confidence            3458888877544555542  2 244667766653322112345789999999999999999999765

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=94.79  E-value=0.25  Score=40.08  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhhcCCCeeec--c-CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEIL--E-KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~--~-~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|+.-=+..+.+.  . .+...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus        10 kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   79 (183)
T 3rz3_A           10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTK   79 (183)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCC
Confidence            345578888877555555443  2 234677777763322112345788999999999999999998764

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=94.75  E-value=0.16  Score=40.77  Aligned_cols=66  Identities=14%  Similarity=0.062  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-=+..+.+.  ..+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+.+.
T Consensus         8 RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (169)
T 1yh2_A            8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP   75 (169)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecC
Confidence            34568888876544445442  2344666666653222112345789999999999999999999764

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=94.66  E-value=0.18  Score=40.56  Aligned_cols=66  Identities=12%  Similarity=0.151  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.--+..+.+.  .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        27 RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~   94 (169)
T 1yrv_A           27 LLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI   94 (169)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC
Confidence            34568888876554555442  2344677777763222112345789999999999999999999764

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=94.61  E-value=0.18  Score=42.30  Aligned_cols=104  Identities=16%  Similarity=0.123  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC---CCCCHHHHH
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC---DNIDEDVER   80 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~---~~L~~~~~~   80 (234)
                      .-..|+..|+.--+..+.+.  .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...   .|+....-.
T Consensus        27 RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~  106 (216)
T 2pwq_A           27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGA  106 (216)
T ss_dssp             HHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCB
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCE
Confidence            34567888876444444432  3344677777763322112345789999999999999999999764   233311001


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q psy8772          81 ELKEYLLTQANENLGMVMIFTLVSSAQEWLST  112 (234)
Q Consensus        81 ~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~  112 (234)
                      .....|.+.|.-..   -|.+++..|+..|.+
T Consensus       107 ICL~iL~~~WsP~~---ti~~VL~sI~sLL~~  135 (216)
T 2pwq_A          107 ICLDVLKNEWSPAL---TIRTALLSIQALLSD  135 (216)
T ss_dssp             BCCHHHHHHCCTTC---CHHHHHHHHHHHHHS
T ss_pred             EEchhhcccCCCCC---cHHHHHHHHHHHHhC
Confidence            11223334443222   355666666666543

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=94.60  E-value=0.19  Score=39.87  Aligned_cols=67  Identities=13%  Similarity=0.031  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhhcCCCeeecc-------CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEILE-------KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~~-------~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|+.--+..+....       .+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        10 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   83 (161)
T 2grr_A           10 SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP   83 (161)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence            3445788888865555544321       122455666653222112345689999999999999999999764

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=94.54  E-value=0.22  Score=40.93  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-=+..+.+.  ..+...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus        52 RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~  119 (194)
T 3bzh_A           52 RIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR  119 (194)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCC
Confidence            34568888876434444332  2344666666653322112345789999999999999999998764

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=94.37  E-value=0.28  Score=39.41  Aligned_cols=66  Identities=11%  Similarity=0.060  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHh-h--c-----CC---Ceeec--c-CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772           5 EEQSNEIEALDS-I--Y-----YG---DMEIL--E-KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus         5 EeQ~~ElEaLeS-I--Y-----~d---e~~~~--~-~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      -.-..|+..|+. .  -     ++   -+...  . .+...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+..
T Consensus         9 ~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   88 (172)
T 2y9m_A            9 SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQ   88 (172)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECT
T ss_pred             HHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEee
Confidence            344578888887 4  1     22   12221  2 34467777776332211234578999999999999999999977

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=94.27  E-value=0.33  Score=39.37  Aligned_cols=68  Identities=10%  Similarity=0.126  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC
Q psy8772           5 EEQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD   72 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~   72 (234)
                      ..-..|+..|+.-=+..+.+.  .++...+.+.|....+-.-..-.+.|.|.||++||..||.|.+....
T Consensus        33 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i  102 (179)
T 1i7k_A           33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC  102 (179)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCC
Confidence            344568888876433444432  22234555555533221123457999999999999999999997643

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=94.22  E-value=0.22  Score=39.43  Aligned_cols=67  Identities=12%  Similarity=0.069  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhhcCCCeeec--cC-----CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEIL--EK-----DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~--~~-----~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|+.==+..+...  ..     +-..+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus         7 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (157)
T 2gjd_A            7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG   80 (157)
T ss_dssp             HHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence            445578888876444444332  11     22455566653222112345789999999999999999998764

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=94.17  E-value=0.27  Score=40.42  Aligned_cols=67  Identities=9%  Similarity=0.074  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhh---cCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSI---YYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSI---Y~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|..-   -+..+.+  ..++...+.+.|....+..-..-.+.|.|.+|++||..||.|.+...
T Consensus         8 ~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   79 (201)
T 3k9o_A            8 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   79 (201)
T ss_dssp             HHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence            4445677777541   2333333  23345677777763322112345689999999999999999998763

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=94.01  E-value=0.24  Score=39.45  Aligned_cols=65  Identities=9%  Similarity=0.069  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.=-+..+.+.  .. +-..+.+.|.|..+ .-..-.+.|.|.||++||..+|.|.+...
T Consensus        18 RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~t-pyegg~f~~~i~fp~~YP~~pP~v~f~t~   85 (167)
T 3fn1_B           18 LLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEG-YYQGGKFQFETEVPDAYNMVPPKVKCLTK   85 (167)
T ss_dssp             HHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSS-TTTTCCEEEEEECCTTBTTBCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCC-ccCCCEEEEEEECCCCCCCCCCeeEecCC
Confidence            44578888887656665553  22 23567777754432 12345688999999999999999998764

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=93.94  E-value=0.25  Score=38.89  Aligned_cols=44  Identities=14%  Similarity=0.091  Sum_probs=31.0

Q ss_pred             CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772          28 DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus        28 ~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      +...+.+.|....+-.-..-.+.+.|.+|++||..||.+.+...
T Consensus        27 ~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   70 (152)
T 2onu_A           27 STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNK   70 (152)
T ss_dssp             EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             ccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecC
Confidence            33566777753222112345789999999999999999998763

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=93.92  E-value=0.25  Score=40.29  Aligned_cols=66  Identities=5%  Similarity=-0.054  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.=-+..+.+.  .++-..+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        18 RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~   85 (187)
T 2f4w_A           18 RLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP   85 (187)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC
Confidence            44568888875434444332  2233566666653222112345789999999999999999998764

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=93.90  E-value=0.25  Score=39.48  Aligned_cols=45  Identities=11%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             CCCcEEEEEeccCCCCCCC--cceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772          27 KDPHVFTIPIQSECVDDEH--QMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus        27 ~~p~~f~I~i~~~~~~~~~--~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .+...+.+.|....+-.-.  .-.+.|.|.+|++||..+|.|.+...
T Consensus        47 ~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~   93 (167)
T 4ds2_A           47 DTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTP   93 (167)
T ss_dssp             SSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence            3456777777643321123  46789999999999999999998764

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=93.61  E-value=0.65  Score=35.80  Aligned_cols=66  Identities=14%  Similarity=0.139  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhhc-CCCeeec--cC-C--CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIY-YGDMEIL--EK-D--PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY-~de~~~~--~~-~--p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-- +..+.+.  .. +  -..+.+.|....+-.-..-.+.|.|.+|++||..+|.+.+...
T Consensus        10 RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   81 (138)
T 1jat_B           10 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK   81 (138)
T ss_dssp             HHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence            4557888887542 3334332  21 2  3567777763322112345789999999999999999999764

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=93.59  E-value=0.22  Score=40.83  Aligned_cols=62  Identities=11%  Similarity=0.160  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhhcCCCeeec------cCCCc---EEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL------EKDPH---VFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~------~~~p~---~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -..|+..|+  -+..+.+.      .++..   .+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus        34 L~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~t-pyegg~f~~~i~fp~~YP~~PP~v~f~t~  104 (190)
T 3o2u_A           34 LKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVRPDEG-YYNYGSINFNLDFNEVYPIEPPKVVCLKK  104 (190)
T ss_dssp             HHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEECCSSS-TTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEcCCCC-CCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence            345677776  23344442      22346   77888865432 12345688999999999999999998764

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=93.59  E-value=0.091  Score=41.44  Aligned_cols=63  Identities=11%  Similarity=0.164  Sum_probs=40.3

Q ss_pred             HHHHHHHHhhcCCCeeecc---CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEILE---KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~~~---~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..|+..|+.--+..+....   .+...+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus         8 ~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~t-pyegg~f~~~i~fp~~YP~~PP~v~f~t~   73 (154)
T 1c4z_D            8 MKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNP-PYDKGAFRIEINFPAEYPFKPPKITFKTK   73 (154)
T ss_dssp             HHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSS-SCCSCCEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCC-CccCCeEEEEEEeCCCCCCCCCEEEEeCC
Confidence            4566666654444444322   233566666654332 12345688999999999999999998764

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=93.46  E-value=0.39  Score=38.28  Aligned_cols=67  Identities=10%  Similarity=0.007  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhhcCCCeeec--cC-----CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEIL--EK-----DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~--~~-----~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|+.==+..+...  ..     +...+.+.|....+-.-..-.+.|.|.+|++||..+|.|.+...
T Consensus        13 ~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~   86 (163)
T 3rcz_B           13 TRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP   86 (163)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence            344568888876555555432  22     23456666654322112356788999999999999999998764

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=93.44  E-value=0.74  Score=36.41  Aligned_cols=66  Identities=11%  Similarity=0.050  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhhc-CCCeeec--c-C--CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIY-YGDMEIL--E-K--DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY-~de~~~~--~-~--~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-- +..+.+.  . +  +...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        25 RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~   96 (156)
T 2q0v_A           25 RLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK   96 (156)
T ss_dssp             HHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence            3456888887642 2334332  2 1  23567777763322112345789999999999999999999764

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=93.12  E-value=0.5  Score=37.63  Aligned_cols=66  Identities=17%  Similarity=0.099  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhcCCC-eeec--cCC---CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGD-MEIL--EKD---PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de-~~~~--~~~---p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.=-++. +.+.  .++   -..+.+.|....+-.-..-.+.|.|.||++||..||.+.+...
T Consensus        29 RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             HHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            3456888887643444 4332  222   3567777763322112345789999999999999999998765

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=92.99  E-value=0.37  Score=39.56  Aligned_cols=66  Identities=14%  Similarity=0.115  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhhcC-------------CCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772           6 EQSNEIEALDSIYY-------------GDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus         6 eQ~~ElEaLeSIY~-------------de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      .-..|+..|+.-=+             ..+.+.  .++...+.+.|....+-.-..-.+.|.|.||++||..||.|.+..
T Consensus        36 RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T  115 (193)
T 2f4z_A           36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT  115 (193)
T ss_dssp             HHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             HHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEec
Confidence            34467777776332             233322  223356666665322211234578999999999999999999976


Q ss_pred             C
Q psy8772          71 C   71 (234)
Q Consensus        71 ~   71 (234)
                      .
T Consensus       116 ~  116 (193)
T 2f4z_A          116 K  116 (193)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=92.87  E-value=0.57  Score=40.11  Aligned_cols=67  Identities=9%  Similarity=0.080  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHh---hcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDS---IYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeS---IY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-..|+..|..   .-+..+.+  ..++...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus        60 ~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~  131 (253)
T 3e46_A           60 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK  131 (253)
T ss_dssp             HHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence            344567777753   12333333  23344677777763322112345789999999999999999998663

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=92.48  E-value=0.53  Score=37.83  Aligned_cols=64  Identities=14%  Similarity=0.088  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhhcCCCeeeccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEILEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.-= ..+. ..++...+.+.|....+-.-..-.+.|.|.+|++||..+|.|.+...
T Consensus        16 RL~~El~~l~~~~-~~v~-~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~   79 (171)
T 1yf9_A           16 RREMDYMRLCNST-RKVY-PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR   79 (171)
T ss_dssp             HHHHHHHHHHSSS-SCEE-ECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHhCC-CCCC-CCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecC
Confidence            3456777776421 1221 23344677777763322112345789999999999999999998663

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=92.39  E-value=0.24  Score=40.24  Aligned_cols=63  Identities=16%  Similarity=0.118  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhhcCCCeeec-cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL-EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~-~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|..   +.+.+. .++...+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus        29 RL~kEl~~l~~---~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~   92 (179)
T 2z5d_A           29 RMDTDVIKLIE---SKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNK   92 (179)
T ss_dssp             HHHHHHHHHHH---SSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHhcCc---CCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecC
Confidence            44567887762   333221 1233567776653222112345789999999999999999999764

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=91.94  E-value=0.26  Score=41.19  Aligned_cols=66  Identities=9%  Similarity=0.041  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhhcCCCeeecc--CCCc-EEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEILE--KDPH-VFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~~--~~p~-~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.--+..+.+..  ++.. .+.+.|....+-.-..-.+.|.|.+|++||..||.|.+...
T Consensus         6 RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~   74 (215)
T 1tte_A            6 RIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK   74 (215)
T ss_dssp             HHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTT
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCC
Confidence            345688888765444455432  2233 66766653211112234688999999999999999998764

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=91.91  E-value=1.1  Score=39.61  Aligned_cols=66  Identities=12%  Similarity=0.136  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhhcCCCe-----ee-ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDM-----EI-LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~-----~~-~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.=-|..+     .. ..++...+.+.|....+-.-..-.+.|.|.||++||..||.|.+...
T Consensus        80 RL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~  151 (323)
T 3ceg_A           80 RLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT  151 (323)
T ss_dssp             HHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred             HHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence            44568888876444321     11 22334566666653222112345789999999999999999998764

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=91.60  E-value=0.4  Score=38.01  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhcCCCeeec---cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL---EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~---~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -..|+..|+  -+..+.+.   ..+...+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus        11 L~kEl~~l~--~~~~~~~~~~~~~~l~~w~~~igp~~t-pyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (160)
T 1y8x_A           11 IQKDINELN--LPKTCDISFSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKVGQGYPHDPPKVKCETM   75 (160)
T ss_dssp             HHHHHHTCC--CCTTEEEECSSTTCTTEEEEEECCSSS-TTTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHhcC--CCCCeEEEeccCCccceEEEEECCCCC-CCCCCEEEEEEeCCCcCCCCCCEEEEecC
Confidence            345777773  12334442   2234667777744322 12345689999999999999999999764

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=91.55  E-value=0.76  Score=41.74  Aligned_cols=66  Identities=12%  Similarity=0.096  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|..==+..+.+.  .++...+.+.|....+-.-..-.+.+.|.+|++||..||.+.+.+.
T Consensus         7 RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   74 (399)
T 4ddg_A            7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR   74 (399)
T ss_dssp             HHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecc
Confidence            34567888876444444432  2233566677763322112346788999999999999999988663

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=90.72  E-value=0.46  Score=38.47  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhhcCCCeeec---cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL---EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~---~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -..|+..|.  -+..+.+.   .++-..+.+.|.|..+ .-..-.+.|.|.+|++||..||.|.+...
T Consensus        31 L~kEl~~l~--~~~~i~~~~p~~~nl~~W~~~igP~~t-pYegg~f~~~i~fp~~YP~~PP~v~F~t~   95 (180)
T 2nvu_C           31 IQKDINELN--LPKTCDISFSDPDDLLNFKLVICPDEG-FYKSGKFVFSFKVGQGYPHDPPKVKCETM   95 (180)
T ss_dssp             HHHHHHTCC--CCTTEEEECSSTTCTTEEEEEECCCSG-GGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHhcC--CCCCeEEEecccccccceEEEECCCCC-CCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence            345677663  12334432   2234667777744322 12245689999999999999999999764

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=90.46  E-value=0.2  Score=40.89  Aligned_cols=66  Identities=14%  Similarity=0.183  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhhc---CCCeeec--cCCCcEEEEEeccC-CCCCCCc-----------ceEEEEEEeCCCCCCCCCeEEE
Q psy8772           6 EQSNEIEALDSIY---YGDMEIL--EKDPHVFTIPIQSE-CVDDEHQ-----------MNCLLRFQYTPKYPEEIPIIEI   68 (234)
Q Consensus         6 eQ~~ElEaLeSIY---~de~~~~--~~~p~~f~I~i~~~-~~~~~~~-----------~~l~L~~~~p~~YP~~~P~i~l   68 (234)
                      .-..|+..|+.-=   ++.+.+.  .++-..+.+.|... .+..-..           -.+.|.|.||++||..||.|.+
T Consensus        31 RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f  110 (186)
T 1zuo_A           31 RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRV  110 (186)
T ss_dssp             HHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEE
Confidence            3456777776432   2334332  22335666666642 2110011           4689999999999999999998


Q ss_pred             ecC
Q psy8772          69 ENC   71 (234)
Q Consensus        69 ~~~   71 (234)
                      ...
T Consensus       111 ~tp  113 (186)
T 1zuo_A          111 VLP  113 (186)
T ss_dssp             EES
T ss_pred             eCC
Confidence            764

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=90.10  E-value=0.47  Score=38.13  Aligned_cols=66  Identities=17%  Similarity=0.107  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhhcCCC-eee--ccCC---CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGD-MEI--LEKD---PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de-~~~--~~~~---p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.=-++. +.+  ..++   -..+.+.|....+-.-..-.+.|.|.||++||..+|.+.+...
T Consensus        39 RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  110 (170)
T 2hlw_A           39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  110 (170)
T ss_dssp             HHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBC
T ss_pred             HHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecc
Confidence            3456788887532333 332  2222   3467777763222112244678999999999999999998764

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=89.87  E-value=0.17  Score=40.30  Aligned_cols=26  Identities=19%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             cceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772          46 QMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus        46 ~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ...+.|.|.+|.+||..||.|.+...
T Consensus        84 kyeFkLefdiP~tYP~tPPeI~Fp~l  109 (168)
T 3kpa_A           84 KYEFEMNFDIPVTYPQAPPEIALPEL  109 (168)
T ss_dssp             EEEEEEEEECCTTTTTSCCCCBCGGG
T ss_pred             eeEEEEEEeCCccCCCCCCEeecccc
Confidence            35789999999999999999999764

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=88.94  E-value=0.22  Score=40.17  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=21.7

Q ss_pred             ceEEEEEEeCCCCCCCCCeEEEec
Q psy8772          47 MNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus        47 ~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      ..+.|.|.+|.+||..||.|.+..
T Consensus        83 y~F~L~~~fPe~YP~~PPeV~F~~  106 (172)
T 2z6o_A           83 YEFDIEFDIPITYPTTAPEIAVPE  106 (172)
T ss_dssp             EEEEEEEECCTTTTTSCCCCBCGG
T ss_pred             eEEEEEEECCCCCCCCCCeeeeCC
Confidence            478999999999999999999855

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	234
d1ukxa_	137	d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like prote	2e-24
d2daya1	115	d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF	9e-20
d2daxa1	140	d.20.1.3 (A:8-147) Uncharacterized protein C21orf6	8e-14
d2dawa1	141	d.20.1.3 (A:8-148) RWD domain-containing protein 2	4e-11

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Length = 137

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.0 bits (228), Expect = 2e-24
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKD-------PHVFTIPIQSECVDDEHQMNCL-LRF 53
            Y + Q +E++AL++IY  D + L  D       P    + +  + +  E     + LR 
Sbjct: 10  SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRV 69

Query: 54  QYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLS 111
           +  P YP+ +P I+++N   +  +    LK +L   A +  G VMIF L    Q +LS
Sbjct: 70  KCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLS 127

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (195), Expect = 9e-20
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 7   QSNEIEALDSIYYGDMEILEKD----PHVFTIPIQSECVDDEHQMN--CLLRFQYTPKYP 60
             +E+E L+SIY  ++++++ +    P    I +     +D+        L  Q   +YP
Sbjct: 6   LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYP 65

Query: 61  EEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWL 110
            E+P I I N   + ++    + + L   A   LG  M++ L+   +E L
Sbjct: 66  HEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEIL 115

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 8e-14
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 22/132 (16%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHV---------------------FTIPIQSEC 40
           +  E Q  E++ L S++ G+ E++  D                        FTI +  + 
Sbjct: 1   EQAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDV 60

Query: 41  VDDEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIF 100
            D++      L      KYP  +P I + +         +   +          G V I 
Sbjct: 61  SDEKMA-MFSLACILPFKYPAVLPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCIL 119

Query: 101 TLVSSAQEWLST 112
                 +E  S 
Sbjct: 120 NATEWVREHASG 131

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 4e-11
 Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 2   DYQEEQSNEIEALDSIYYGDMEILEKDPHVFT----------------IPIQSECVDDEH 45
           +  + Q  E+E L S++    E+  +D +  T                I        +E 
Sbjct: 7   ESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEP 66

Query: 46  QMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDVERELKEYLLTQANENLGMVMIFTLVSS 105
           ++   L+      YP     +   + +          K         + G + +   +  
Sbjct: 67  KVKIDLQVTMPHSYPYLALQLFGRSSELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQW 126

Query: 106 AQEWLST 112
            Q+  ++
Sbjct: 127 LQDNSAS 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	99.95
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	99.94
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	99.87
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	99.86
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	95.97
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	95.81
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	95.7
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	95.13
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	95.02
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	94.99
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	94.88
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.77
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	94.77
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.61
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.49
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.4
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.39
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	94.3
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	94.3
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	94.08
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	93.99
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.98
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	93.93
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.84
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	93.55
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.55
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	93.54
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	93.5
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	93.49
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.2
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.11
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.01
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	90.78
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	89.96
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	80.66

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.2e-27  Score=188.12  Aligned_cols=114  Identities=29%  Similarity=0.525  Sum_probs=102.7

Q ss_pred             CC-hHHHHHHHHHHHHhhcCCCeeeccC-------CCcEEEEEeccCCCC-CCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           1 MD-YQEEQSNEIEALDSIYYGDMEILEK-------DPHVFTIPIQSECVD-DEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         1 M~-~~EeQ~~ElEaLeSIY~de~~~~~~-------~p~~f~I~i~~~~~~-~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      |+ |+|+|++|++||+|||+|+|+.+..       .|..|+|+|.+...+ ....+++.|.|+||++||.++|.+.+.+.
T Consensus         8 ~~~~~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~   87 (137)
T d1ukxa_           8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             cccHHHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecC
Confidence            66 9999999999999999999998764       346899999886654 34568999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhH
Q psy8772          72 DNIDEDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLSTKS  114 (234)
Q Consensus        72 ~~L~~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~~~  114 (234)
                      +||+..++..|.+.|..++++++|++|||+||+||||||.++.
T Consensus        88 ~~l~~~~~~~L~~~l~~~~~e~~G~~mif~lv~~lqe~L~e~n  130 (137)
T d1ukxa_          88 KGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN  130 (137)
T ss_dssp             ESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCCEeHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999998753

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.7e-26  Score=175.23  Aligned_cols=106  Identities=25%  Similarity=0.463  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhhcCCCeeeccCC----CcEEEEEeccCCCC--CCCcceEEEEEEeCCCCCCCCCeEEEecCCCCCHHH
Q psy8772           5 EEQSNEIEALDSIYYGDMEILEKD----PHVFTIPIQSECVD--DEHQMNCLLRFQYTPKYPEEIPIIEIENCDNIDEDV   78 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~~~~----p~~f~I~i~~~~~~--~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~~L~~~~   78 (234)
                      +.+++|++||+|||||+|++++.+    +..|+|++.|..++  ....+++.|+|++|++||+++|.+.+.+++||+..+
T Consensus         4 ~~~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~~~l~~~~   83 (115)
T d2daya1           4 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQ   83 (115)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEESSCHHH
T ss_pred             hhHHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeeccCCCCHHH
Confidence            457899999999999999988653    36788888876553  345789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q psy8772          79 ERELKEYLLTQANENLGMVMIFTLVSSAQEWL  110 (234)
Q Consensus        79 ~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l  110 (234)
                      +..|+..|..++++++|++|||+||+|+||+|
T Consensus        84 ~~~L~~~l~~~~~e~~G~~mif~lv~~~qE~L  115 (115)
T d2daya1          84 IHTILQVLGHVAKAGLGTAMLYELIEKGKEIL  115 (115)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEHHHHHHHHHhhC
Confidence            99999999999999999999999999999997

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-22  Score=158.19  Aligned_cols=110  Identities=17%  Similarity=0.120  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHhhcCCC--eeeccC----------------CC--cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCC
Q psy8772           3 YQEEQSNEIEALDSIYYGD--MEILEK----------------DP--HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEE   62 (234)
Q Consensus         3 ~~EeQ~~ElEaLeSIY~de--~~~~~~----------------~p--~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~   62 (234)
                      +.|.|.+|+|||+||||++  |...+.                .|  ..|+|++...    ...+.+.|.|.+|++||..
T Consensus         8 ~~e~Q~~ElEaL~SIY~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~i~L~~~lp~~YP~~   83 (141)
T d2dawa1           8 SLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIE----EPKVKIDLQVTMPHSYPYL   83 (141)
T ss_dssp             HHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEET----TTTEEEEEEEEECSSTTSS
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEecCchhhhHHHHhhcCcccccCcceEEEEecccC----CccceEEEEEEeCCCCCCC
Confidence            5699999999999999977  433211                13  3455544321    3457899999999999999


Q ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhHHHh
Q psy8772          63 IPIIEIENCDNIDEDVERELKEYLLTQANEN-LGMVMIFTLVSSAQEWLSTKSDQL  117 (234)
Q Consensus        63 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~-lG~~mIf~lv~~lqE~l~~~~~~~  117 (234)
                      +|.+.+.+ .+|++.+...|...|.+.+.++ +|++|||+||+|||+++..++.++
T Consensus        84 ~P~i~~~~-~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~lqe~~~~~l~~~  138 (141)
T d2dawa1          84 ALQLFGRS-SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASYFLNR  138 (141)
T ss_dssp             CCEEEEEC-SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHHHCCC
T ss_pred             CCCceeec-cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhc
Confidence            99999977 7899999999999999999887 799999999999999999887654

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.7e-22  Score=153.61  Aligned_cols=112  Identities=21%  Similarity=0.280  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHHhhcCCC--eeecc-------------------CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCC
Q psy8772           3 YQEEQSNEIEALDSIYYGD--MEILE-------------------KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPE   61 (234)
Q Consensus         3 ~~EeQ~~ElEaLeSIY~de--~~~~~-------------------~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~   61 (234)
                      +.|.|.+|||||+||||++  |...+                   ..+..|.|++..... +...+.+.|+|++|++||.
T Consensus         2 ~~E~Q~~EleaL~SIY~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-~~~~~~l~L~~~lP~~YP~   80 (140)
T d2daxa1           2 QAEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVS-DEKMAMFSLACILPFKYPA   80 (140)
T ss_dssp             HHHHHHHHHHHHHHHCCSSSSEEESCHHHHHHHHHHHHHTCCCCCCSCEEEEEEEEEECS-TTCEEEEEEEEEECSSTTS
T ss_pred             cHHHHHHHHHHHHHhCCCCCeEEecccchhhhhhhccccccccCCCCceeEEEeeccCcc-cccCceEEEEEEecCcCCC
Confidence            4689999999999999987  43321                   012567777765432 2456889999999999999


Q ss_pred             CCCeEEEecCCCCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhHHH
Q psy8772          62 EIPIIEIENCDNIDEDVERELKEYLLTQANEN-LGMVMIFTLVSSAQEWLSTKSDQ  116 (234)
Q Consensus        62 ~~P~i~l~~~~~L~~~~~~~L~~~L~~~~ee~-lG~~mIf~lv~~lqE~l~~~~~~  116 (234)
                      ++|.|.+.+. +++..+...|...|...+.++ .|++|||.||+||||++..++.+
T Consensus        81 ~~P~i~l~~~-~l~~~~~~~l~~~l~~~~~~~~~Ge~~if~lve~lqe~~~~~~~~  135 (140)
T d2daxa1          81 VLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYVSR  135 (140)
T ss_dssp             SCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHCCC
T ss_pred             cCCceeccCC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            9999999775 899999999999999999876 69999999999999999988743

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.017  Score=41.70  Aligned_cols=65  Identities=14%  Similarity=0.186  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhhcCCCeeec----cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772           6 EQSNEIEALDSIYYGDMEIL----EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~----~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      .-+.|+..|+.==++.+.+.    .++...+.+.|....+..-..-.+.+.|.+|++||..||.+.+.+
T Consensus         7 RL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t   75 (117)
T d2a7la1           7 RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTG   75 (117)
T ss_dssp             HHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEES
T ss_pred             HHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeC
Confidence            44578888875222333332    123356777776443321234578999999999999999998865

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=95.81  E-value=0.026  Score=41.28  Aligned_cols=64  Identities=9%  Similarity=0.079  Sum_probs=46.2

Q ss_pred             HHHHHHHHhhcCCCeee--ccC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEI--LEK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~--~~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      +-|+..|+.--++.+.+  .++ +...+.+.|....+..-..-.+.+.|.+|++||..+|.+.+...
T Consensus         5 ~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   71 (125)
T d2awfa1           5 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITE   71 (125)
T ss_dssp             HHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCC
Confidence            45788888877776654  233 35788888874333223356789999999999999999988754

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=95.70  E-value=0.035  Score=39.64  Aligned_cols=62  Identities=10%  Similarity=0.075  Sum_probs=40.0

Q ss_pred             HHHHHHHhhcCCCeee--ccCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772           9 NEIEALDSIYYGDMEI--LEKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus         9 ~ElEaLeSIY~de~~~--~~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      -|+..|+.==+..+.+  ..++...+.+.|....+-.-..-.+.+.|.+|++||..||.+.+..
T Consensus         5 kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t   68 (109)
T d2fo3a1           5 KELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQ   68 (109)
T ss_dssp             HHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECS
T ss_pred             HHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEe
Confidence            3566665432333333  2345577888876433311234578999999999999999999865

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=95.13  E-value=0.04  Score=41.07  Aligned_cols=65  Identities=12%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -+.|+..|+.==+..+.+.  +++...+.+.|....+..-..-.+.+.|.+|++||..+|.+.+.+.
T Consensus         6 L~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~   72 (147)
T d1z2ua1           6 IQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR   72 (147)
T ss_dssp             HHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecC
Confidence            3467777775434444442  2334566666654322112356789999999999999999998764

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=95.02  E-value=0.064  Score=40.64  Aligned_cols=67  Identities=9%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhhcCCCeeecc--CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           5 EEQSNEIEALDSIYYGDMEILE--KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         5 EeQ~~ElEaLeSIY~de~~~~~--~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..-+.|+..|..--++.+.+..  .+-..+.+.|.+..+..-..-.+.+.|.+|++||..+|.|.+.+.
T Consensus        12 kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~   80 (156)
T d2e2ca_          12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP   80 (156)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeecccc
Confidence            3456788888765444555432  234788888875433213345789999999999999999998763

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.99  E-value=0.096  Score=39.37  Aligned_cols=84  Identities=15%  Similarity=0.063  Sum_probs=47.8

Q ss_pred             cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC---CCCHHHHHHHHHHHHHHHHhcCCchHHHHH
Q psy8772          26 EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD---NIDEDVERELKEYLLTQANENLGMVMIFTL  102 (234)
Q Consensus        26 ~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~---~L~~~~~~~L~~~L~~~~ee~lG~~mIf~l  102 (234)
                      +.+...+.+.|....+..-..-.+.+.|.+|++||..+|.|.+....   ++....-......+.+.|  +.+ --|.++
T Consensus        33 ~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~~g~ic~~~~~~~W--~p~-~~i~~i  109 (154)
T d2bepa1          33 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQW--AAA-MTLRTV  109 (154)
T ss_dssp             SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTC--CTT-CCHHHH
T ss_pred             CCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCCCCCeeCCCCccccccccccC--CCc-CCHHHH
Confidence            34556777777643331123456889999999999999999987642   222111011111122222  222 246777


Q ss_pred             HHHHHHHHHH
Q psy8772         103 VSSAQEWLST  112 (234)
Q Consensus       103 v~~lqE~l~~  112 (234)
                      +..|+..|..
T Consensus       110 l~~i~~ll~~  119 (154)
T d2bepa1         110 LLSLQALLAA  119 (154)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHcC
Confidence            7777776654

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=94.88  E-value=0.39  Score=35.52  Aligned_cols=66  Identities=9%  Similarity=0.107  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-+.|+..|+.=-+..+.+.  .++...+.+.|....+..-..-.+.+.|.+|++||..+|.+.+.+.
T Consensus         7 Rl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~   74 (153)
T d1ayza_           7 RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE   74 (153)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccC
Confidence            44567777776555555443  2333566666654332112345689999999999999999998663

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=94.77  E-value=0.072  Score=39.95  Aligned_cols=64  Identities=14%  Similarity=0.070  Sum_probs=43.3

Q ss_pred             HHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..|+..|..==+..+.+.  .++...+.+.|....+-.-..-.+.+.|.+|++||..+|.+.+.+.
T Consensus         8 ~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~   73 (154)
T d1yh2a1           8 KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP   73 (154)
T ss_dssp             HHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCC
Confidence            457877876333444443  2345677777764433113356789999999999999999998764

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=94.77  E-value=0.055  Score=41.08  Aligned_cols=64  Identities=6%  Similarity=0.066  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      +.|+..|..-=++.+.+.  ++ +...+.+.|.+..+-.-..-.+.+.|.+|++||..+|.|.+...
T Consensus         6 ~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~   72 (161)
T d1pzva_           6 KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISE   72 (161)
T ss_dssp             HHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSC
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCC
Confidence            467888877666666653  33 35778887764332112356799999999999999999998764

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=94.61  E-value=0.06  Score=40.45  Aligned_cols=104  Identities=14%  Similarity=0.203  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC---CCCHHHHHH
Q psy8772           7 QSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD---NIDEDVERE   81 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~---~L~~~~~~~   81 (234)
                      -+.|+..|..==+..+.+.  +++...+.+.|....+..-..-.+.+.|++|++||..+|.+.+....   ++....-..
T Consensus         9 L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~i   88 (148)
T d1yrva1           9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQP   88 (148)
T ss_dssp             HHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCB
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCceecCcccc
Confidence            3456766654333344442  34557788887743321123457899999999999999999986642   222110000


Q ss_pred             HHHHHHHHHHh-cCCchHHHHHHHHHHHHHHH
Q psy8772          82 LKEYLLTQANE-NLGMVMIFTLVSSAQEWLST  112 (234)
Q Consensus        82 L~~~L~~~~ee-~lG~~mIf~lv~~lqE~l~~  112 (234)
                      ....|.. .+. +.+. -|.+++..|+..|..
T Consensus        89 C~~~l~~-~~~W~p~~-tl~~vL~~I~~ll~~  118 (148)
T d1yrva1          89 CIDFLDN-PEKWNTNY-TLSSILLALQVMLSN  118 (148)
T ss_dssp             CCHHHHC-GGGCCTTC-CHHHHHHHHHHHHTS
T ss_pred             cccccCc-hhhcCccc-cHHHHHHHHHHHHhC
Confidence            1112221 111 3333 488888888877754

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=94.49  E-value=0.067  Score=40.46  Aligned_cols=65  Identities=5%  Similarity=-0.057  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -+.|+..|+.==+..+.+.  .++...+.+.|....+..-..-.+.+.|.+|++||..||.|.+...
T Consensus         6 l~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   72 (157)
T d2f4wa1           6 LKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP   72 (157)
T ss_dssp             HHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCC
Confidence            3456666664333334332  2233567777764332112356789999999999999999998764

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=94.40  E-value=0.029  Score=42.70  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhcCCCeeecc-CCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEILE-KDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~~~-~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      +.|+..|...=+..+.+.+ ++...+.+.|.|..+- -..-.+.+.|.+|++||..+|.|.+.+.
T Consensus         9 ~kEl~~l~~~~~~~i~~~~~~~l~~w~~~i~p~~t~-Y~gg~f~~~i~fp~~YP~~pP~V~f~t~   72 (157)
T d1y8xa1           9 QKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPHDPPKVKCETM   72 (157)
T ss_dssp             HHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSST-TTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHhCCCCCCcEEEcCCCcceEEEEEECCCCCC-cCCCeEEEEEEecCCCCCCCceeeeccc
Confidence            3566666532111133322 2347888888654431 2356789999999999999999998664

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=94.39  E-value=0.12  Score=38.58  Aligned_cols=64  Identities=14%  Similarity=0.108  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..|+..|+.=-+..+.+.  .++...+.+.|....+.--..-.+.+.|.+|++||..+|.|.+.+.
T Consensus         8 ~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   73 (149)
T d1j7db_           8 IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK   73 (149)
T ss_dssp             HHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCC
Confidence            456777755333444332  2345777777764322112345689999999999999999999764

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=94.30  E-value=0.15  Score=38.26  Aligned_cols=103  Identities=11%  Similarity=0.022  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC---CCCHHHHH
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD---NIDEDVER   80 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~---~L~~~~~~   80 (234)
                      ....|+..|..==+..+.+.  .++...+.+.|.+..+-.-..-.+.+.|.+|++||..+|.|.+.+..   ++... -.
T Consensus        10 Rl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~-G~   88 (151)
T d1zdna1          10 LVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGAN-GE   88 (151)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT-SB
T ss_pred             HHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCceecCC-CC
Confidence            34567777765323334433  23457788887654332123567889999999999999999987742   22211 01


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q psy8772          81 ELKEYLLTQANENLGMVMIFTLVSSAQEWLST  112 (234)
Q Consensus        81 ~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~  112 (234)
                      .....+.+.|  +.+ --|.+++..++..|.+
T Consensus        89 ic~~~l~~~W--~p~-~~l~~il~~i~~~l~~  117 (151)
T d1zdna1          89 ICVNVLKRDW--TAE-LGIRHVLLTIKCLLIH  117 (151)
T ss_dssp             BCHHHHTTTC--CTT-CCHHHHHHHHHHHHHS
T ss_pred             cccccccccC--Ccc-ccHHHHHHHHHHHHhC
Confidence            1122232323  223 3477777777777754

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=94.30  E-value=0.086  Score=39.36  Aligned_cols=65  Identities=12%  Similarity=0.114  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -+.|+..|+.-=+..+.+.  ++ +...+.+.|....+.--..-.+.+.|.+|++||..+|.+.+.+.
T Consensus         6 L~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~   73 (149)
T d1fzya_           6 IMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTK   73 (149)
T ss_dssp             HHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCC
Confidence            3457777775444455552  22 45677777764332112356789999999999999999998663

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=94.08  E-value=0.12  Score=38.51  Aligned_cols=65  Identities=11%  Similarity=0.140  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -..|+..|..==+..+.+.  +.+...+.+.|.+..+.--..-.+.+.|.+|++||..+|.+.+.+.
T Consensus         6 l~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   72 (146)
T d1i7ka_           6 LQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP   72 (146)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCC
Confidence            3457777765433344332  2344677777765433212345789999999999999999999774

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=93.99  E-value=0.13  Score=38.67  Aligned_cols=65  Identities=17%  Similarity=0.125  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -..|+..|++==+..+.+.  .++...+.+.|....+..-..-.+.+.|.+|++||..+|.+.+.+.
T Consensus         8 l~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~   74 (152)
T d1jata_           8 IIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK   74 (152)
T ss_dssp             HHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCC
Confidence            3467777876444444443  2334667777764322112345789999999999999999998775

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=93.98  E-value=0.082  Score=39.96  Aligned_cols=105  Identities=15%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhhcCCCeeecc-C------CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecCC---CCC
Q psy8772           6 EQSNEIEALDSIYYGDMEILE-K------DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENCD---NID   75 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~~-~------~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~~---~L~   75 (234)
                      .-+.|+..|+.=-+..|.... .      +...+.+.|.+..+..-..-.+.+.|.+|++||..+|.|.+....   ++.
T Consensus         6 Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   85 (156)
T d2uyza1           6 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY   85 (156)
T ss_dssp             HHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBC
T ss_pred             HHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccccccc
Confidence            345678888865555554321 1      225666777654332123456899999999999999999987642   121


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q psy8772          76 EDVERELKEYLLTQANENLGMVMIFTLVSSAQEWLST  112 (234)
Q Consensus        76 ~~~~~~L~~~L~~~~ee~lG~~mIf~lv~~lqE~l~~  112 (234)
                      .. -......|...-.-+.. -.|.+++..|+..|..
T Consensus        86 ~~-G~icl~~l~~~~~W~p~-~ti~~il~~i~~ll~~  120 (156)
T d2uyza1          86 PS-GTVSLSILEEDKDWRPA-ITIKQILLGIQELLNE  120 (156)
T ss_dssp             TT-SBBCCGGGCTTTTCCTT-CCHHHHHHHHHHHHHS
T ss_pred             cc-ceeeecccCcccccCCc-ccHHHHHHHHHHHhcC
Confidence            10 00001111100001222 3578888888877754

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=93.93  E-value=0.15  Score=38.61  Aligned_cols=65  Identities=11%  Similarity=0.060  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhhcCCCeeec--cC-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEIL--EK-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~--~~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -+.|+..|..==+..+.+.  ++ +...+.+.|....+.--..-.+.+.|.+|++||..+|.|.+...
T Consensus         8 L~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   75 (164)
T d2ucza_           8 LLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS   75 (164)
T ss_dssp             HHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecC
Confidence            3467777765222334332  32 44677777774333112356789999999999999999998654

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=93.84  E-value=0.16  Score=37.69  Aligned_cols=64  Identities=17%  Similarity=0.091  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhcCCCeeec---cC---CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEIL---EK---DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~~---~~---~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..|++.|+.=-++.+...   ..   +-..+.+.|....+..-..-.+.+.|.||++||..+|.|.+...
T Consensus        11 ~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~   80 (139)
T d2a4da1          11 LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK   80 (139)
T ss_dssp             HHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecC
Confidence            467888875444443322   11   23567777764332113356788999999999999999998764

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=93.55  E-value=0.27  Score=36.27  Aligned_cols=64  Identities=14%  Similarity=0.182  Sum_probs=38.4

Q ss_pred             HHHHHHHHhhcCCC-e--eeccCC---CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGD-M--EILEKD---PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de-~--~~~~~~---p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..|++.++-=.+.. +  .+..++   -....+.|....+..-..-.+.+.|.||++||..+|.|.+.+.
T Consensus        10 ~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~   79 (136)
T d1jatb_          10 LEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK   79 (136)
T ss_dssp             HHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEecc
Confidence            45666665533333 2  223332   2456666654332112345689999999999999999998774

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=93.55  E-value=0.13  Score=38.26  Aligned_cols=64  Identities=20%  Similarity=0.267  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhhcCCCeeecc--C-CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           7 QSNEIEALDSIYYGDMEILE--K-DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         7 Q~~ElEaLeSIY~de~~~~~--~-~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -+.|+..|+.-=+..+....  + +-..+.+.+.|..+ --..-.+.+.|.||++||..+|.|.+.+.
T Consensus         5 l~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~iigp~~t-py~gg~f~~~i~fp~~YP~~pP~v~f~t~   71 (150)
T d1wzva1           5 VVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQP-PYHLKAFNLRISFPPEYPFKPPMIKFTTK   71 (150)
T ss_dssp             HHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCST-TGGGEEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHCCCCCEEEEecCCCceEEEEEEECCCCC-CccCceeeEEEecCcCCccCCceeeccCC
Confidence            34678888764444443322  2 23456665644332 12345789999999999999999998764

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=93.54  E-value=0.17  Score=37.69  Aligned_cols=66  Identities=12%  Similarity=0.114  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           6 EQSNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         6 eQ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .-..|+..|+.==++.+.+.  .++...+.+.|....+..-..-.+.+.|.+|++||..+|.+.+...
T Consensus         7 Rl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~   74 (149)
T d1z3da1           7 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISK   74 (149)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCc
Confidence            34467777765333344332  2233566666653332112344689999999999999999998764

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.50  E-value=0.07  Score=40.66  Aligned_cols=42  Identities=17%  Similarity=0.139  Sum_probs=29.7

Q ss_pred             cEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772          30 HVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus        30 ~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      ..+.+.|....+-.-.+-.+.+.|.||++||..+|.|.+.+.
T Consensus        44 ~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~F~t~   85 (161)
T d2f4za1          44 HRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTK   85 (161)
T ss_dssp             EEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             ceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEEecCC
Confidence            455566654332112345789999999999999999998653

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=93.49  E-value=0.18  Score=38.06  Aligned_cols=43  Identities=19%  Similarity=0.175  Sum_probs=32.1

Q ss_pred             CcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772          29 PHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus        29 p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      -..|.|.|....+..-.+-.+.+.|.+|++||..+|.|.+.+.
T Consensus        25 ~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~   67 (158)
T d1yf9a1          25 VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNR   67 (158)
T ss_dssp             TTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             ceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCC
Confidence            3577788874433212356789999999999999999998763

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=93.20  E-value=0.27  Score=36.42  Aligned_cols=64  Identities=11%  Similarity=0.070  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhcCCCeeec--cCCCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772           8 SNEIEALDSIYYGDMEIL--EKDPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus         8 ~~ElEaLeSIY~de~~~~--~~~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      +.|+..|+.==+..+.+.  .++...+.+.|....+..-..-.+.+.|.+|++||..+|.+.+.+.
T Consensus         8 ~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~   73 (148)
T d1y6la_           8 QKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTR   73 (148)
T ss_dssp             HHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCC
Confidence            457777764223334332  3345666666654222112345689999999999999999998764

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=93.01  E-value=0.1  Score=38.74  Aligned_cols=43  Identities=12%  Similarity=0.153  Sum_probs=31.0

Q ss_pred             CCcEEEEEeccCCCCCCCcceEEEEEEeCCCCCCCCCeEEEecC
Q psy8772          28 DPHVFTIPIQSECVDDEHQMNCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus        28 ~p~~f~I~i~~~~~~~~~~~~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      +...+.+.|.|..+- -.+-.+.+.|.+|++||..||.|.+.+.
T Consensus        28 n~~~w~~~igp~~tp-Y~gg~f~~~i~fp~~YP~~pP~v~f~t~   70 (144)
T d1c4zd_          28 NLLTWQGLIVPDNPP-YDKGAFRIEINFPAEYPFKPPKITFKTK   70 (144)
T ss_dssp             SSSEEEEEECCCSSS-CCSCCEEEEEECCTTTTTSCCEEEESSC
T ss_pred             cceEEEEEECCCCcC-ccCCEEEEEEEecCcccCCCceeeccCC
Confidence            346777777544321 2345689999999999999999998664

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.088  Score=40.00  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=21.8

Q ss_pred             eEEEEEEeCCCCCCCCCeEEEecC
Q psy8772          48 NCLLRFQYTPKYPEEIPIIEIENC   71 (234)
Q Consensus        48 ~l~L~~~~p~~YP~~~P~i~l~~~   71 (234)
                      .+.|.|.||++||..||.+.+...
T Consensus        67 ~~~l~i~fp~~YP~~PP~v~f~t~   90 (162)
T d1zuoa1          67 YILLNFSFKDNFPFDPPFVRVVLP   90 (162)
T ss_dssp             SEEEEEECCTTTTSSCCEEEEEES
T ss_pred             eEEEEEECCCchhhhcceEEEEEE
Confidence            489999999999999999999775

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=0.53  Score=34.63  Aligned_cols=67  Identities=12%  Similarity=0.135  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHHHhhcCCCeee------ccCCCcEEEEEeccCCCC--CCCcceEEEEEEeCCCCCCCCCeEEEec
Q psy8772           3 YQEEQSNEIEALDSIYYGDMEI------LEKDPHVFTIPIQSECVD--DEHQMNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus         3 ~~EeQ~~ElEaLeSIY~de~~~------~~~~p~~f~I~i~~~~~~--~~~~~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      |.+.-..|+-.+-+.|++- ..      ..+.....-+.|.+..+-  ......+.+.|.+|.+||..+|.+.+..
T Consensus        15 ~~~~~~~d~~~~l~~~~~l-~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~p   89 (141)
T d1s1qa_          15 YRDLTVRETVNVITLYKDL-KPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKP   89 (141)
T ss_dssp             THHHHHHHHHHHHHHCTTE-EEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECC
T ss_pred             chhhHHHHHHHHHHhCCCC-CCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEec
Confidence            3455667888899999753 21      111122333444322110  1123556778889999999999998864

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.66  E-value=0.58  Score=34.92  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=21.1

Q ss_pred             ceEEEEEEeCCCCCCCCCeEEEec
Q psy8772          47 MNCLLRFQYTPKYPEEIPIIEIEN   70 (234)
Q Consensus        47 ~~l~L~~~~p~~YP~~~P~i~l~~   70 (234)
                      ..+-+.|.+|.+||..+|.+.+..
T Consensus        72 y~ipi~I~lP~~YP~~pP~v~~~~   95 (152)
T d1uzxa_          72 HSIPVIMWVPSMYPVKPPFISINL   95 (152)
T ss_dssp             -CEEEEEECCTTTTTSCCEEEECC
T ss_pred             eEEEEEEEcCCCCCCCCCEEEEec
Confidence            468999999999999999999954