Psyllid ID: psy8810


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELVM
cccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccc
cHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHEcHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEc
mrslglplisfgLTGAVVANAyyqkkqfyPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFtvfkddfspKFVALFTLLLFLKAFHWLTEDrvdfmerspmisYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELVM
MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELVM
MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPkfvalftlllflkafHWLTEDRVDFMERSPMISYIFHIRIIVlltvlglldlYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELVM
****GLPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMEL**
MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELVM
MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELVM
MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELVM
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELVM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST


Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
UNIPROTKB|E1BAK9 611 SYVN1 "Uncharacterized protein 0.949 0.338 0.608 4.7e-64
UNIPROTKB|E2RSJ2 776 SYVN1 "Uncharacterized protein 0.949 0.266 0.608 4.7e-64
UNIPROTKB|Q86TM6 617 SYVN1 "E3 ubiquitin-protein li 0.949 0.335 0.608 4.7e-64
UNIPROTKB|I3LGG8 610 SYVN1 "Uncharacterized protein 0.949 0.339 0.608 4.7e-64
MGI|MGI:1921376 612 Syvn1 "synovial apoptosis inhi 0.949 0.338 0.608 4.7e-64
UNIPROTKB|Q6NRL6 605 syvn1-a "E3 ubiquitin-protein 0.949 0.342 0.603 6e-64
UNIPROTKB|Q5XHH7 595 syvn1-b "E3 ubiquitin-protein 0.949 0.347 0.594 1.2e-63
ZFIN|ZDB-GENE-030131-7166 625 syvn1 "synovial apoptosis inhi 0.949 0.331 0.603 2e-63
FB|FBgn0039875 626 sip3 "septin interacting prote 0.977 0.340 0.539 1.7e-59
WB|WBGene00004768 610 sel-11 [Caenorhabditis elegans 0.931 0.332 0.536 7.8e-55
UNIPROTKB|E1BAK9 SYVN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 126/207 (60%), Positives = 152/207 (73%)

Query:    10 SFGLTGAVVANAYYQKKQFYPSVVYITKSNSSMAVIYIQALILVILAGKLVKKIFFGQLR 69
             S  LTGAVVA+AYY K QFYP+VVY+TKS+ SMAV+YIQA +LV L GK++ K+FFGQLR
Sbjct:    11 SLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLR 70

Query:    70 AAEFEHLMERSWYAVTETCLAFTVFKDDFSPXXXXXXXXXXXXXXXHWLTEDRVDFMERS 129
             AAE EHL+ERSWYAVTETCLAFTVF+DDFSP               HWL EDRVDFMERS
Sbjct:    71 AAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVDFMERS 130

Query:   130 PMISYIFHIRIIVXXXXXXXXXXYFVVGAYQTTVTKGASVMIVFGFEYAILLTVCVNILI 189
             P IS++FH RI+            FV  AY + +T+GASV +VFGFEYAIL+T+ + I I
Sbjct:   131 PNISWLFHCRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAILMTMVLTIFI 190

Query:   190 KYALHTIDLNREIFWESKAVFFLYMEL 216
             KY LH++DL  E  W++KAV+ LY EL
Sbjct:   191 KYVLHSVDLQSENPWDNKAVYMLYTEL 217




GO:0043066 "negative regulation of apoptotic process" evidence=IEA
GO:0030433 "ER-associated protein catabolic process" evidence=IEA
GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0001701 "in utero embryonic development" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|E2RSJ2 SYVN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q86TM6 SYVN1 "E3 ubiquitin-protein ligase synoviolin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LGG8 SYVN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1921376 Syvn1 "synovial apoptosis inhibitor 1, synoviolin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NRL6 syvn1-a "E3 ubiquitin-protein ligase synoviolin A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q5XHH7 syvn1-b "E3 ubiquitin-protein ligase synoviolin B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7166 syvn1 "synovial apoptosis inhibitor 1, synoviolin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0039875 sip3 "septin interacting protein 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00004768 sel-11 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
COG5243 491 COG5243, HRD1, HRD ubiquitin ligase complex, ER me 2e-18
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
 Score = 82.3 bits (203), Expect = 2e-18
 Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 4/186 (2%)

Query: 1   MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITK-SNSSMAVIYIQALILVILAGKL 59
           MR +   L S  L G  V  + Y     Y ++V  ++ S   + +     L+L  L    
Sbjct: 1   MRFILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITIGLNVILLLFFLIANA 60

Query: 60  VKKIFFGQLRAAEFEHLMERSWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLT 119
           +K + FG LR  E E L E+ W  +TE  LA +VF++  S  F  L + LLF K FHW+ 
Sbjct: 61  LKTLLFGSLRTFELELLYEQLWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWIL 120

Query: 120 EDRV--DFMERSPMISYIFHIRIIVLLTVLGLLDLYFVVGAYQTTVTKGASVMIVFGFEY 177
             R     ++ +    +IF  R      +L +LD   +     +      S + +F  E+
Sbjct: 121 SFRTERLQIQSTDQRFHIFS-RFSCAYFLLSILDASLIYLCISSEHLIDKSTLFLFVCEF 179

Query: 178 AILLTV 183
           ++LL  
Sbjct: 180 SVLLLN 185


Length = 491

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 218
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 100.0
KOG0802|consensus 543 99.85
PF13705508 TRC8_N: TRC8 N-terminal domain 97.48
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
Probab=100.00  E-value=9.6e-32  Score=236.26  Aligned_cols=213  Identities=25%  Similarity=0.412  Sum_probs=181.3

Q ss_pred             CccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHh
Q psy8810           1 MRSLGLPLISFGLTGAVVANAYYQKKQFYPSVVYITK-SNSSMAVIYIQALILVILAGKLVKKIFFGQLRAAEFEHLMER   79 (218)
Q Consensus         1 mr~~~Y~~~S~~l~~~~v~~a~~~~~~fy~~~v~l~~-s~~~~~vl~N~~~~~~~l~~~~l~~lfFG~LR~~E~e~l~er   79 (218)
                      ||.++|++.|.++.+.+++-+++..++-|++.+..++ |++++++..|+++++..++|+++++++||+||..|.||++||
T Consensus         1 ~r~i~y~l~~~Vl~~l~~~~~~~~s~t~ys~l~~t~~ls~~hi~i~~~~ill~~~l~~~~l~~llFGsLr~~E~e~~~E~   80 (491)
T COG5243           1 MRFILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITIGLNVILLLFFLIANALKTLLFGSLRTFELELLYEQ   80 (491)
T ss_pred             CceeehhHHHHHHHHHHHHHHHhccceeeeeeeeeeccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence            8999999999999999999999999999999999988 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhCCCccHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy8810          80 SWYAVTETCLAFTVFKDDFSPKFVALFTLLLFLKAFHWLTEDRVDFMERSPMISYIFH--IRIIVLLTVLGLLDLYFVVG  157 (218)
Q Consensus        80 ~~~~v~~~~l~~~if~~~~~~~~~~~f~~L~~lK~fhwl~~dR~e~l~~sp~~~~~~h--~R~~~ll~~l~~~D~~~i~~  157 (218)
                      +|++++|++++.++|+++++.++..++..|+++|+|||++++|.|...- .++...+|  .|+.+++.+|.++|..++..
T Consensus        81 l~~tlt~~ll~iS~F~e~i~fs~~~l~~~Ll~~kvfhwil~~R~er~~~-~st~~~~~ifSrfS~~~~lL~ild~~li~~  159 (491)
T COG5243          81 LWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILSFRTERLQI-QSTDQRFHIFSRFSCAYFLLSILDASLIYL  159 (491)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            9999999999999999999999999999999999999999999997532 23444444  59999999999999999999


Q ss_pred             HHHHhhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCcccceeEeEEeeec
Q psy8810         158 AYQTTVT-KGASVMIVFGFEYAILLTVCVNILIKYALHTIDLNREIFWESKAVFFLYMELV  217 (218)
Q Consensus       158 ~~~~~~~-~g~s~~llf~fE~~iL~~~~l~~~~ky~l~l~dl~~~~~We~K~~~~~y~el~  217 (218)
                      |+.+... +|.+. .++-.||-.+........-|-.+..+|.++++  ++|++|.||+|+.
T Consensus       160 CiSs~~liD~~~l-fL~~c~F~~~ll~l~s~~n~~cV~n~~~~ddD--d~rs~~~f~~~v~  217 (491)
T COG5243         160 CISSEHLIDKSTL-FLFVCEFSVLLLNLTSEANKLCVYNYEARDDD--DERSTYLFRLEVC  217 (491)
T ss_pred             HhhhHhhhhhhHH-HHHHHHHHHHHHHHHHhhcccceeeccccccc--ccceeeeeeeehH
Confidence            9986543 33333 33444555555444444445555566766666  8999999999963



>KOG0802|consensus Back     alignment and domain information
>PF13705 TRC8_N: TRC8 N-terminal domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00