Psyllid ID: psy8823
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | 2.2.26 [Sep-21-2011] | |||||||
| Q26474 | 349 | Lachesin OS=Schistocerca | N/A | N/A | 0.818 | 0.905 | 0.841 | 1e-159 | |
| Q24372 | 359 | Lachesin OS=Drosophila me | yes | N/A | 0.816 | 0.877 | 0.691 | 1e-133 | |
| P15364 | 333 | Protein amalgam OS=Drosop | no | N/A | 0.829 | 0.960 | 0.346 | 8e-62 | |
| Q7Z3B1 | 354 | Neuronal growth regulator | yes | N/A | 0.546 | 0.596 | 0.337 | 3e-23 | |
| Q5R412 | 354 | Neuronal growth regulator | yes | N/A | 0.562 | 0.612 | 0.329 | 5e-23 | |
| Q9Z0J8 | 348 | Neuronal growth regulator | yes | N/A | 0.546 | 0.606 | 0.329 | 2e-22 | |
| Q80Z24 | 348 | Neuronal growth regulator | no | N/A | 0.546 | 0.606 | 0.329 | 5e-22 | |
| Q8WZ42 | 34350 | Titin OS=Homo sapiens GN= | no | N/A | 0.642 | 0.007 | 0.263 | 8e-22 | |
| A2ASS6 | 35213 | Titin OS=Mus musculus GN= | no | N/A | 0.647 | 0.007 | 0.261 | 3e-21 | |
| Q9W6V2 | 352 | Neuronal growth regulator | yes | N/A | 0.683 | 0.75 | 0.305 | 9e-21 |
| >sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 270/321 (84%), Positives = 298/321 (92%), Gaps = 5/321 (1%)
Query: 10 FVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP 69
FV FF ++ AQRTPTISYISQEQIKDIGGTVEL+CSVQYAQDYPV+WMKVDRN+ +P
Sbjct: 9 FVGFF--SVVYAQRTPTISYISQEQIKDIGGTVELECSVQYAQDYPVLWMKVDRNRQVDP 66
Query: 70 LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDL 129
LPISTGSSLIIRDSRFA+RYDTASSTYTL +KDIQETDAG+Y+CQVIIG+NNKI+AEVDL
Sbjct: 67 LPISTGSSLIIRDSRFALRYDTASSTYTLQIKDIQETDAGFYQCQVIIGLNNKITAEVDL 126
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSIL 189
QVRRPPVISDNSTRSLVVSEGQ V+LEC+AGG+P PR+SWRRENNAILPTGGSIYRG++L
Sbjct: 127 QVRRPPVISDNSTRSLVVSEGQAVRLECYAGGYPAPRVSWRRENNAILPTGGSIYRGNVL 186
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
KI +I KEDRGTYYCVAENGVGKG RRNIAVEVEF PVITVP+PRLGQALQYDMDLECHV
Sbjct: 187 KISRIGKEDRGTYYCVAENGVGKGARRNIAVEVEFPPVITVPRPRLGQALQYDMDLECHV 246
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
EAYPPPAI W+K++T VL+NNQHYSISHFATADEFTDTT RVITIEKRQYG Y C+AAN
Sbjct: 247 EAYPPPAITWLKDET--VLSNNQHYSISHFATADEFTDTT-RVITIEKRQYGKYQCKAAN 303
Query: 310 KLGTSEKTVELFESIIPVCPP 330
KLG + + VELFE+IIPVCPP
Sbjct: 304 KLGEAREEVELFETIIPVCPP 324
|
May play a role in early neuronal differentiation and axon outgrowth. Schistocerca americana (taxid: 7009) |
| >sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/321 (69%), Positives = 266/321 (82%), Gaps = 6/321 (1%)
Query: 10 FVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP 69
+L + T AQRTPTISYI+QEQIKDIGGTVE CSVQYA++Y V+++K D ++P
Sbjct: 14 LLLAIFVQQTLAQRTPTISYITQEQIKDIGGTVEFDCSVQYAKEYNVLFLKTD----SDP 69
Query: 70 LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDL 129
+ +STGS+L+I+DSRF++RYD SSTY L +KDIQETDAG Y CQV+I +K+SAEV L
Sbjct: 70 VFLSTGSTLVIKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVVISTVHKVSAEVKL 129
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSIL 189
VRRPPVISDNST+S+V SEG VQ+EC+A G+PTP I+WRRENNAILPT + Y G+ L
Sbjct: 130 SVRRPPVISDNSTQSVVASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTL 189
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
+I + KEDRGTYYCVA+NGV KG RRNI VEVEFAPVITVP+PRLGQALQYDMDLECH+
Sbjct: 190 RIKSVKKEDRGTYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHI 249
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
EAYPPPAIVW K+D Q L NNQHYSISHFATADE+TD+T+RVIT+EKRQYG Y+C+A N
Sbjct: 250 EAYPPPAIVWTKDDIQ--LANNQHYSISHFATADEYTDSTLRVITVEKRQYGDYVCKATN 307
Query: 310 KLGTSEKTVELFESIIPVCPP 330
+ G +E V LFE+IIPVCPP
Sbjct: 308 RFGEAEARVNLFETIIPVCPP 328
|
Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth. Drosophila melanogaster (taxid: 7227) |
| >sp|P15364|AMAL_DROME Protein amalgam OS=Drosophila melanogaster GN=Ama PE=2 SV=2 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 193/326 (59%), Gaps = 6/326 (1%)
Query: 6 FIFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNK 65
+ G + I+L + P IS IS++ + +G +VE C+V+ V W K
Sbjct: 6 LLIGLIFCLAISLDSVLSAPVISQISKDVVASVGDSVEFNCTVEEVGQLSVSWAKRPSES 65
Query: 66 VTEPLPISTGSSLIIRDSRFAIRY----DTASSTYTLLVKDIQETDAGYYRCQVIIGINN 121
T + +S + L + D R+ + T S+ YT +++I+ +D G Y CQV++
Sbjct: 66 DTNSVVLSMRNILSLPDQRYNVTVTEGPKTGSAIYTFRIQNIEVSDMGPYECQVLVSATE 125
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181
K++ ++ LQ++ PPVI++N+ +S +V+EGQ ++L C A G P P ISW RE+NA++P GG
Sbjct: 126 KVTKKLSLQIKTPPVIAENTPKSTLVTEGQNLELTCHANGFPKPTISWAREHNAVMPAGG 185
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY 241
+ L+I + + DRG YYC+A+NG G+ +R I VEVEF P I V +P++ Q + +
Sbjct: 186 HLLAEPTLRIRSVHRMDRGGYYCIAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSH 245
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
+LEC V+ YP P +VW K L +++H+ +++ A++ T + +R+ ++ + +G
Sbjct: 246 SAELECSVQGYPAPTVVWHKNGVP--LQSSRHHEVANTASSSGTTTSVLRIDSVGEEDFG 303
Query: 302 SYICRAANKLGTSEKTVELFESIIPV 327
Y C A NKLG ++ + LF+++IPV
Sbjct: 304 DYYCNATNKLGHADARLHLFQTVIPV 329
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q7Z3B1|NEGR1_HUMAN Neuronal growth regulator 1 OS=Homo sapiens GN=NEGR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 112/243 (46%), Gaps = 32/243 (13%)
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
Y+L ++++ TD G Y C V + + +V L V+ PP I D S + V+EG V L
Sbjct: 101 YSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQVHLTVQVPPKIYDIS-NDMTVNEGTNVTL 158
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
C A G P P ISWR I P+ G L I IT++ G Y C AEN V
Sbjct: 159 TCLATGKPEPSISWRH----ISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDV 214
Query: 216 RNIAVEVEFAPVI------TVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT 269
R + V V FAP I TV R G + C PPPA W K + +++
Sbjct: 215 RKVKVVVNFAPTIQEIKSGTVTPGRSGL-------IRCEGAGVPPPAFEWYKGE-KKLFN 266
Query: 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329
Q I +F+T T V + + +G+Y C AANKLGT+ + +P+ P
Sbjct: 267 GQQGIIIQNFSTRSILT-----VTNVTQEHFGNYTCVAANKLGTTNAS-------LPLNP 314
Query: 330 PQT 332
P T
Sbjct: 315 PST 317
|
May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain. Homo sapiens (taxid: 9606) |
| >sp|Q5R412|NEGR1_PONAB Neuronal growth regulator 1 OS=Pongo abelii GN=NEGR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
Y+L ++++ TD G Y C V + + +V L V+ PP I D S+ + ++EG V L
Sbjct: 101 YSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQVHLTVQVPPKIYDISS-DMTINEGTNVTL 158
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
C A G P P ISWR I P+ G L I IT++ G Y C AEN V
Sbjct: 159 TCLATGKPEPSISWRH----ISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDV 214
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS 275
R + V V FAP I K + + + C PPPA W K + +++ Q
Sbjct: 215 RKVKVVVNFAPTIQEIKSGTMTPGRSGL-IRCEGAGVPPPAFEWYKGE-KKLFNGQQGII 272
Query: 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
I +F+T T V + + +G+Y C AANKLGT+ + +P+ PP T
Sbjct: 273 IQNFSTRSILT-----VTNVTQEHFGNYTCVAANKLGTTNAS-------LPLNPPST 317
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May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain. Pongo abelii (taxid: 9601) |
| >sp|Q9Z0J8|NEGR1_RAT Neuronal growth regulator 1 OS=Rattus norvegicus GN=Negr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 112/243 (46%), Gaps = 32/243 (13%)
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
Y+L ++++ TD G Y C V + + +V L V+ PP I D S + ++EG V L
Sbjct: 95 YSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQVHLTVQVPPKIYDIS-NDMTINEGTNVTL 152
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
C A G P P ISWR I P+ G L I IT++ G Y C AEN V
Sbjct: 153 TCLATGKPEPAISWRH----ISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDV 208
Query: 216 RNIAVEVEFAPVI------TVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT 269
+ + V V FAP I TV R G + C PPPA W K + +++
Sbjct: 209 KKVRVVVNFAPTIQEIKSGTVTPGRSGL-------IRCEGAGVPPPAFEWYKGE-KRLFN 260
Query: 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329
Q I +F+T T V + + +G+Y C AANKLGT+ + +P+ P
Sbjct: 261 GQQGIIIQNFSTRSILT-----VTNVTQEHFGNYTCVAANKLGTTNAS-------LPLNP 308
Query: 330 PQT 332
P T
Sbjct: 309 PST 311
|
May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain. Rattus norvegicus (taxid: 10116) |
| >sp|Q80Z24|NEGR1_MOUSE Neuronal growth regulator 1 OS=Mus musculus GN=Negr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 112/243 (46%), Gaps = 32/243 (13%)
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
Y+L ++++ TD G Y C V + + +V L V+ PP I D S + ++EG V L
Sbjct: 95 YSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQVHLTVQVPPKIYDIS-NDMTINEGTNVTL 152
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
C A G P P ISWR I P+ G L I IT++ G Y C AEN V
Sbjct: 153 TCLATGKPEPVISWRH----ISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDV 208
Query: 216 RNIAVEVEFAPVI------TVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT 269
+ + V V FAP I TV R G + C PPPA W K + +++
Sbjct: 209 KKVRVIVNFAPTIQEIKSGTVTPGRSGL-------IRCEGAGVPPPAFEWYKGE-KRLFN 260
Query: 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329
Q I +F+T T V + + +G+Y C AANKLGT+ + +P+ P
Sbjct: 261 GQQGIIIQNFSTRSILT-----VTNVTQEHFGNYTCVAANKLGTTNAS-------LPLNP 308
Query: 330 PQT 332
P T
Sbjct: 309 PST 311
|
May be involved in cell-adhesion. May function as a trans-neural growth-promoting factor in regenerative axon sprouting in the mammalian brain. Mus musculus (taxid: 10090) |
| >sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4 | Back alignment and function description |
|---|
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 33/281 (11%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + + +C V AQ + W K ++ I G + I +T L
Sbjct: 7212 GESADFECHVTGAQPMRITWSKDNKE-------IRPGGNYTIT---------CVGNTPHL 7255
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF 158
+ + + D+G Y CQ + + + L V+ PP S V +G+ +QLEC
Sbjct: 7256 RILKVGKGDSGQYTCQATNDVGKDMCS-AQLSVKEPPKFVKKLEASKVAKQGESIQLECK 7314
Query: 159 AGGHPTPRISWRRENNAILPTG----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
G P ++SW R ++ + + I ++L I + + ED G Y C A NGVG +
Sbjct: 7315 ISGSPEIKVSWFRNDSELHESWKYNMSFINSVALLTINEASAEDSGDYICEAHNGVGDAS 7374
Query: 215 RRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274
+ A+ V+ PV T +G D+ L+C + PP +VW+K+ Q + N++ +
Sbjct: 7375 -CSTALTVKAPPVFTQKPSPVGALKGSDVILQCEISGTPPFEVVWVKDRKQ--VRNSKKF 7431
Query: 275 SIS--HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313
I+ HF DT++ ++ +E G Y C+A N++G+
Sbjct: 7432 KITSKHF-------DTSLHILNLEASDVGEYHCKATNEVGS 7465
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 126/279 (45%), Gaps = 29/279 (10%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + + +C V AQ V W K ++ I G + I +T L
Sbjct: 7173 GESADFECHVTGAQPMRVTWSKDNKE-------IRPGGNYTIT---------CVGNTPHL 7216
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF 158
+ + + D+G Y CQ + + + L V+ PP S V +G+ +QLEC
Sbjct: 7217 RILKVGKGDSGQYTCQATNDVGKDMCS-AQLSVKEPPKFIKKLDASKVAKQGESIQLECK 7275
Query: 159 AGGHPTPRISWRRENNAILPTG----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
G P ++ W R ++ + + + ++L I + + ED G Y C A NGVG +
Sbjct: 7276 ISGSPEIKVVWFRNDSELHESWKYNMSFVNSVALLTINEASAEDTGDYICEAHNGVGDAS 7335
Query: 215 RRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274
+ A++V+ PV T P +G D+ L+C + PP +VW+K D +QV ++ +
Sbjct: 7336 C-STALKVKAPPVFTQKPPPVGALKGSDVILQCEISGTPPFEVVWVK-DRKQVRSSKK-- 7391
Query: 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313
F + DT++ + +E G Y C+A N++G+
Sbjct: 7392 ----FKITSKNFDTSLHIFNLEAPDIGEYHCKATNEVGS 7426
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9W6V2|NEGR1_CHICK Neuronal growth regulator 1 OS=Gallus gallus GN=NEGR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 135/295 (45%), Gaps = 31/295 (10%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASS-TYT 97
G T L+C Y +D ++R+ + I GS D R +I TA+ Y+
Sbjct: 51 GDTAVLRC---YLEDGASKGAWLNRSSI-----IFAGSDKWSVDPRVSIA--TANRREYS 100
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L ++D+ TD G Y C V + + +V L V+ P I S+ +VV+EG V L C
Sbjct: 101 LQIQDVDVTDDGPYTCSVQTQHTPR-TMQVHLTVQVSPKIFRISS-DIVVNEGSNVTLVC 158
Query: 158 FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217
A G P P ISWR I P+ G L I IT++ G Y C AEN V +
Sbjct: 159 LATGKPEPSISWRH----ISPSAKPFESGQYLDIYGITRDQAGEYECSAENDVSVPDVKK 214
Query: 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
+ V V FAP I K G L + + C P P W + + +++++ Q +I
Sbjct: 215 VKVTVNFAPTIQELKSS-GVMLGGNGLIRCEGAGVPAPVFEWYRGE-RKLISGQQGITIK 272
Query: 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
+++T T V + + +G+Y C AANKLG + + +P+ PP T
Sbjct: 273 NYSTRSLLT-----VTNVTEEHFGNYTCVAANKLGMTNAS-------LPLNPPST 315
|
May be involved in cell-adhesion. May participate in the regulation of neurite outgrowth in the developing brain. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | ||||||
| 3024084 | 349 | RecName: Full=Lachesin; Flags: Precursor | 0.818 | 0.905 | 0.841 | 1e-158 | |
| 242012463 | 344 | lachesin precursor, putative [Pediculus | 0.854 | 0.959 | 0.751 | 1e-151 | |
| 189238127 | 364 | PREDICTED: similar to lachesin [Triboliu | 0.826 | 0.876 | 0.766 | 1e-148 | |
| 322789174 | 346 | hypothetical protein SINV_07303 [Solenop | 0.797 | 0.890 | 0.8 | 1e-148 | |
| 110761725 | 363 | PREDICTED: lachesin-like [Apis mellifera | 0.826 | 0.878 | 0.760 | 1e-148 | |
| 380022768 | 363 | PREDICTED: lachesin-like [Apis florea] | 0.826 | 0.878 | 0.760 | 1e-147 | |
| 307181503 | 372 | Lachesin [Camponotus floridanus] | 0.831 | 0.862 | 0.762 | 1e-147 | |
| 156554623 | 361 | PREDICTED: lachesin-like [Nasonia vitrip | 0.839 | 0.897 | 0.748 | 1e-146 | |
| 383865563 | 363 | PREDICTED: lachesin-like [Megachile rotu | 0.834 | 0.887 | 0.737 | 1e-146 | |
| 340722954 | 363 | PREDICTED: lachesin-like [Bombus terrest | 0.834 | 0.887 | 0.737 | 1e-145 |
| >gi|3024084|sp|Q26474.1|LACH_SCHAM RecName: Full=Lachesin; Flags: Precursor gi|294841|gb|AAC37185.1| lachesin [Schistocerca americana] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 270/321 (84%), Positives = 298/321 (92%), Gaps = 5/321 (1%)
Query: 10 FVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP 69
FV FF ++ AQRTPTISYISQEQIKDIGGTVEL+CSVQYAQDYPV+WMKVDRN+ +P
Sbjct: 9 FVGFF--SVVYAQRTPTISYISQEQIKDIGGTVELECSVQYAQDYPVLWMKVDRNRQVDP 66
Query: 70 LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDL 129
LPISTGSSLIIRDSRFA+RYDTASSTYTL +KDIQETDAG+Y+CQVIIG+NNKI+AEVDL
Sbjct: 67 LPISTGSSLIIRDSRFALRYDTASSTYTLQIKDIQETDAGFYQCQVIIGLNNKITAEVDL 126
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSIL 189
QVRRPPVISDNSTRSLVVSEGQ V+LEC+AGG+P PR+SWRRENNAILPTGGSIYRG++L
Sbjct: 127 QVRRPPVISDNSTRSLVVSEGQAVRLECYAGGYPAPRVSWRRENNAILPTGGSIYRGNVL 186
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
KI +I KEDRGTYYCVAENGVGKG RRNIAVEVEF PVITVP+PRLGQALQYDMDLECHV
Sbjct: 187 KISRIGKEDRGTYYCVAENGVGKGARRNIAVEVEFPPVITVPRPRLGQALQYDMDLECHV 246
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
EAYPPPAI W+K++T VL+NNQHYSISHFATADEFTDTT RVITIEKRQYG Y C+AAN
Sbjct: 247 EAYPPPAITWLKDET--VLSNNQHYSISHFATADEFTDTT-RVITIEKRQYGKYQCKAAN 303
Query: 310 KLGTSEKTVELFESIIPVCPP 330
KLG + + VELFE+IIPVCPP
Sbjct: 304 KLGEAREEVELFETIIPVCPP 324
|
Source: Schistocerca americana Species: Schistocerca americana Genus: Schistocerca Family: Acrididae Order: Orthoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242012463|ref|XP_002426952.1| lachesin precursor, putative [Pediculus humanus corporis] gi|212511181|gb|EEB14214.1| lachesin precursor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/334 (75%), Positives = 297/334 (88%), Gaps = 4/334 (1%)
Query: 18 LTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSS 77
++ QRTPTISYISQEQIKDIGGTVEL+C+VQYAQDYPV+W++++RN+ +PLPIS+GSS
Sbjct: 1 MSWCQRTPTISYISQEQIKDIGGTVELQCAVQYAQDYPVLWIRINRNRNNDPLPISSGSS 60
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137
LII+D+RF++R+D ASSTY L +KDIQETDAGYY+CQVII +NNKISAEVDLQVRRPP+I
Sbjct: 61 LIIKDTRFSLRHDVASSTYILQIKDIQETDAGYYQCQVIIELNNKISAEVDLQVRRPPII 120
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKE 197
SDNSTRSLVVSEGQ V LEC+AGG+P PRISWRRENNA+LPTGG+IY+G++LKI + KE
Sbjct: 121 SDNSTRSLVVSEGQSVNLECYAGGYPAPRISWRRENNAVLPTGGAIYKGNVLKIASVKKE 180
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAI 257
DRGTYYCVAENGVG+G RRNI VEVEF PVITVP+PRLGQA+QYDMDLECHVEAYPPPAI
Sbjct: 181 DRGTYYCVAENGVGRGARRNIGVEVEFKPVITVPRPRLGQAVQYDMDLECHVEAYPPPAI 240
Query: 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317
VW+K+ Q L+NNQHYSISHFATADE+TDTT+RVITIEKRQYG Y C+AANKLGT+E
Sbjct: 241 VWLKDGVQ--LSNNQHYSISHFATADEYTDTTLRVITIEKRQYGRYTCKAANKLGTAEAQ 298
Query: 318 VELFESIIPVCPPQTQPSELLPLRNV--NMAVIF 349
VELFE+IIP+CPP S + V +M+++F
Sbjct: 299 VELFETIIPICPPACGYSRTGGVSAVSSSMSIVF 332
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189238127|ref|XP_001814833.1| PREDICTED: similar to lachesin [Tribolium castaneum] gi|270008732|gb|EFA05180.1| hypothetical protein TcasGA2_TC015310 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 246/321 (76%), Positives = 284/321 (88%), Gaps = 2/321 (0%)
Query: 10 FVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP 69
VL I + AQR+PTISYI+Q QIKDIGGTVEL CSVQY DYPVIWMK+D
Sbjct: 10 LVLGVFIEICLAQRSPTISYITQTQIKDIGGTVELSCSVQYTNDYPVIWMKIDPRSNANS 69
Query: 70 LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDL 129
LPISTGS+LI+ +SR+++RYD ASSTYTL +KDIQETDAG+Y CQ+II +N++SAEV+L
Sbjct: 70 LPISTGSTLILHESRYSLRYDEASSTYTLQIKDIQETDAGFYHCQIIISPSNRVSAEVEL 129
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSIL 189
QVRRPP ISDNSTRS+VVSEGQ VQ+EC+AGG+P PRISWRRENNAILPTGGSIYRG+++
Sbjct: 130 QVRRPPFISDNSTRSVVVSEGQAVQMECYAGGYPPPRISWRRENNAILPTGGSIYRGNVM 189
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
KI QI KEDRGTYYCVAENGVG+GT+RNIAVEVEFAPV+TVP+PRLGQALQYDMDLECHV
Sbjct: 190 KIKQIKKEDRGTYYCVAENGVGRGTKRNIAVEVEFAPVVTVPRPRLGQALQYDMDLECHV 249
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
EAYPPPA+ W+K++ L+NNQHYSISHFATADEFTDTT+RVITIEKRQYG YIC+A+N
Sbjct: 250 EAYPPPALTWVKDEV--ALSNNQHYSISHFATADEFTDTTLRVITIEKRQYGQYICKASN 307
Query: 310 KLGTSEKTVELFESIIPVCPP 330
KLG++E VELFESIIPVCPP
Sbjct: 308 KLGSAEGVVELFESIIPVCPP 328
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322789174|gb|EFZ14560.1| hypothetical protein SINV_07303 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/310 (80%), Positives = 283/310 (91%), Gaps = 2/310 (0%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII 80
AQRTPTISYISQEQIKDIG TVEL CSVQYAQ+YPV+W+KV++ V E + +STG++LII
Sbjct: 2 AQRTPTISYISQEQIKDIGETVELLCSVQYAQEYPVLWIKVNKESVHEQVALSTGTALII 61
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
RDSRFA++YDTAS+TY L +KDIQETDAG+Y+C++ I +NN ISAEV+LQVRRPP+ISDN
Sbjct: 62 RDSRFALKYDTASTTYNLQIKDIQETDAGFYQCRIQISVNNLISAEVELQVRRPPIISDN 121
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
ST+SLVVSEGQPV LEC+A G+PTPRISWRRENNAILPTGGSIYRG+ LKI I KEDRG
Sbjct: 122 STQSLVVSEGQPVLLECYANGYPTPRISWRRENNAILPTGGSIYRGTTLKISSIRKEDRG 181
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI 260
TYYC+AENGVG+G RRNI VEVEFAPVIT P+PRLGQALQYDMDLECHVEAYPPPAI+W+
Sbjct: 182 TYYCIAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLECHVEAYPPPAIIWL 241
Query: 261 KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
K+D Q L+NNQHYSISHFATADE+TDTTIRVITIEKRQYG Y+CRAANKLGT+E VEL
Sbjct: 242 KDDIQ--LSNNQHYSISHFATADEYTDTTIRVITIEKRQYGEYLCRAANKLGTAETKVEL 299
Query: 321 FESIIPVCPP 330
FE+IIPVCPP
Sbjct: 300 FETIIPVCPP 309
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110761725|ref|XP_397471.3| PREDICTED: lachesin-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 244/321 (76%), Positives = 284/321 (88%), Gaps = 2/321 (0%)
Query: 10 FVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP 69
F + L++ +QRTPTISYISQEQIKDIG TVE +CSVQYA ++PV+W K+++N +
Sbjct: 7 FFVLALLHTVNSQRTPTISYISQEQIKDIGDTVEFRCSVQYAPEFPVVWTKINKNIANDQ 66
Query: 70 LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDL 129
LP+S GSSLIIRD+RFA+RYD A ST+ L +KDIQETDAG+Y+C+++I +NN +SA V+L
Sbjct: 67 LPLSHGSSLIIRDTRFALRYDDALSTFILQIKDIQETDAGFYQCKILISLNNYVSANVEL 126
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSIL 189
QVRRPP+ISDNSTRSLVV+EGQPVQLEC+AGG PTPRISWRRENNAILPTGGSIYRG+ L
Sbjct: 127 QVRRPPIISDNSTRSLVVTEGQPVQLECYAGGFPTPRISWRRENNAILPTGGSIYRGNTL 186
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
KI I KEDRGTYYCVAENGVG+G RRNI VEVEFAPVIT P+PRLGQALQYDMDLECHV
Sbjct: 187 KISTIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLECHV 246
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
EAYPPPAIVW+K+D Q L+NNQHYSISHFATAD++TDTTIRVITIEKRQYG Y+CRAAN
Sbjct: 247 EAYPPPAIVWLKDDIQ--LSNNQHYSISHFATADQYTDTTIRVITIEKRQYGEYVCRAAN 304
Query: 310 KLGTSEKTVELFESIIPVCPP 330
KLGT+E VELFE+ +PVCPP
Sbjct: 305 KLGTAETKVELFETTVPVCPP 325
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380022768|ref|XP_003695209.1| PREDICTED: lachesin-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 244/321 (76%), Positives = 283/321 (88%), Gaps = 2/321 (0%)
Query: 10 FVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP 69
F + L+ +QRTPTISYISQEQIKDIG TVE +CSVQYA ++PV+W K+++N +
Sbjct: 7 FFILTLLYTVNSQRTPTISYISQEQIKDIGDTVEFRCSVQYAPEFPVVWTKINKNIANDQ 66
Query: 70 LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDL 129
LP+S GSSLIIRD+RFA+RYD A ST+ L +KDIQETDAG+Y+C+++I +NN +SA V+L
Sbjct: 67 LPLSHGSSLIIRDTRFALRYDDALSTFILQIKDIQETDAGFYQCKILISLNNYVSANVEL 126
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSIL 189
QVRRPP+ISDNSTRSLVV+EGQPVQLEC+AGG PTPRISWRRENNAILPTGGSIYRG+ L
Sbjct: 127 QVRRPPIISDNSTRSLVVTEGQPVQLECYAGGFPTPRISWRRENNAILPTGGSIYRGNTL 186
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
KI I KEDRGTYYCVAENGVG+G RRNI VEVEFAPVIT P+PRLGQALQYDMDLECHV
Sbjct: 187 KISTIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLECHV 246
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
EAYPPPAIVW+K+D Q L+NNQHYSISHFATAD++TDTTIRVITIEKRQYG Y+CRAAN
Sbjct: 247 EAYPPPAIVWLKDDIQ--LSNNQHYSISHFATADQYTDTTIRVITIEKRQYGEYVCRAAN 304
Query: 310 KLGTSEKTVELFESIIPVCPP 330
KLGT+E VELFE+ +PVCPP
Sbjct: 305 KLGTAETKVELFETTVPVCPP 325
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307181503|gb|EFN69091.1| Lachesin [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 247/324 (76%), Positives = 284/324 (87%), Gaps = 3/324 (0%)
Query: 7 IFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKV 66
I FL AQRTPTISYISQEQIKDIG TVEL+CS+QYA+DYPV+W+K++RN V
Sbjct: 5 ILALTCVFL-QTVVAQRTPTISYISQEQIKDIGETVELRCSIQYAEDYPVLWIKLNRNSV 63
Query: 67 TEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAE 126
E + +STG++LIIRDSRFAIR+DTAS++Y L +KDIQETDAG+Y+C++ I +NN ++AE
Sbjct: 64 HEQVALSTGTALIIRDSRFAIRHDTASASYLLQIKDIQETDAGFYQCRIQISVNNLLNAE 123
Query: 127 VDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG 186
V+LQVRRPP+ISDNST+SLVVSEGQPV LEC+A G P RISWRRENNAILPTGGSIYRG
Sbjct: 124 VELQVRRPPIISDNSTQSLVVSEGQPVMLECYASGFPPARISWRRENNAILPTGGSIYRG 183
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246
+ LKI I KEDRGTYYCVAENGVG+G RRNI VEVEFAPVIT P+PRLGQALQYDMDLE
Sbjct: 184 NTLKISAIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLE 243
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
CHVEAYPPPAI W+K+D Q L+NNQHYSISHFATADE+TDTTIRVITIEKRQYG Y+CR
Sbjct: 244 CHVEAYPPPAITWVKDDVQ--LSNNQHYSISHFATADEYTDTTIRVITIEKRQYGVYVCR 301
Query: 307 AANKLGTSEKTVELFESIIPVCPP 330
AANKLG++E VELFE+IIPVCPP
Sbjct: 302 AANKLGSAETKVELFETIIPVCPP 325
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156554623|ref|XP_001604968.1| PREDICTED: lachesin-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 247/330 (74%), Positives = 289/330 (87%), Gaps = 6/330 (1%)
Query: 1 MESKGFIFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMK 60
M+ G IF + L++ +QRTPTISYISQEQIKDIGGTVE CSVQY+QDYPV+W+K
Sbjct: 1 MKLLGVIF---VLGLMHSVYSQRTPTISYISQEQIKDIGGTVEFVCSVQYSQDYPVLWIK 57
Query: 61 VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN 120
V++N+ + LPIST ++LIIRDSRFA+R D +SSTYTL +KDIQETDAG+Y CQ++I +
Sbjct: 58 VNKNR-EDQLPISTNTALIIRDSRFALRSDPSSSTYTLQIKDIQETDAGFYLCQILISTS 116
Query: 121 NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180
+KISAEV+LQVRRPP+ISDNSTRSLVVSEGQPV+L C+AGG PTPRISWRRENNAILPTG
Sbjct: 117 SKISAEVELQVRRPPIISDNSTRSLVVSEGQPVELNCYAGGFPTPRISWRRENNAILPTG 176
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ 240
GSIYRG+ LKI + KEDRGTYYCVAENGVG+G RRNI +E+EFAPVIT P+PRLGQALQ
Sbjct: 177 GSIYRGNTLKIAHVRKEDRGTYYCVAENGVGRGARRNINLEIEFAPVITAPRPRLGQALQ 236
Query: 241 YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
YDMDLECHVEAYPPP I W K++ Q L+NNQHYSISHFATADE+TDTT+RVITIEK+QY
Sbjct: 237 YDMDLECHVEAYPPPGITWHKDEVQ--LSNNQHYSISHFATADEYTDTTLRVITIEKKQY 294
Query: 301 GSYICRAANKLGTSEKTVELFESIIPVCPP 330
G Y+C+AANKLGT+E VELFE+IIPVCPP
Sbjct: 295 GEYVCKAANKLGTAETRVELFETIIPVCPP 324
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383865563|ref|XP_003708242.1| PREDICTED: lachesin-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 239/324 (73%), Positives = 284/324 (87%), Gaps = 2/324 (0%)
Query: 7 IFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKV 66
++ ++F + QRTPTISYI+QEQIKDIGGTVE +CSVQYAQD+PVIW+K++++
Sbjct: 4 MYIILVFVFLQTVYGQRTPTISYITQEQIKDIGGTVEFRCSVQYAQDFPVIWIKINKDMA 63
Query: 67 TEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAE 126
+ LP+S GSSLII D+RFA+++D A+S+Y L VKDIQETDAG+Y+C+V+I +NN ++A
Sbjct: 64 NDQLPLSHGSSLIITDTRFALKHDEATSSYILQVKDIQETDAGFYQCKVLISLNNYVTAN 123
Query: 127 VDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG 186
V+LQVRRPP+ISDNSTRSLVVSEGQPVQLEC+AGG P PRISWRRENNAILPTGGSIYRG
Sbjct: 124 VELQVRRPPIISDNSTRSLVVSEGQPVQLECYAGGFPAPRISWRRENNAILPTGGSIYRG 183
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246
+ LKIP I KEDRGTYYCVAENGVG+G RRNI VEVEFAPVI+ P+PRLGQALQYDMDLE
Sbjct: 184 NTLKIPAIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVISAPRPRLGQALQYDMDLE 243
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
CHVEAYPPPAI W K+ VL+NNQHYSISHFATAD++TDTTIRVITIEK+QYG Y+C+
Sbjct: 244 CHVEAYPPPAITWFKDS--NVLSNNQHYSISHFATADQYTDTTIRVITIEKKQYGEYVCK 301
Query: 307 AANKLGTSEKTVELFESIIPVCPP 330
AANKLGT+E VELFE+ +PVCPP
Sbjct: 302 AANKLGTAETRVELFETTVPVCPP 325
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722954|ref|XP_003399864.1| PREDICTED: lachesin-like [Bombus terrestris] gi|350403675|ref|XP_003486872.1| PREDICTED: lachesin-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 239/324 (73%), Positives = 283/324 (87%), Gaps = 2/324 (0%)
Query: 7 IFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKV 66
+ F+ F + +QRTPTISYISQEQIKDIG TVE +CSV YA D+PV+W K+++N
Sbjct: 4 FYTFLAFAFLYAVKSQRTPTISYISQEQIKDIGETVEFRCSVLYAPDFPVVWTKINKNVA 63
Query: 67 TEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAE 126
+ LP+S GS+LIIRD+RF ++YD A ST+ L +KDIQETDAG+Y+C+++I +NN +SA
Sbjct: 64 NDQLPLSHGSTLIIRDTRFTLKYDDALSTFRLQIKDIQETDAGFYQCKILISLNNYVSAN 123
Query: 127 VDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG 186
V+LQVRRPP+ISDNSTR+LVV+EGQPVQL+C+AGG PTPRISWRRENNAILPTGGSIYRG
Sbjct: 124 VELQVRRPPIISDNSTRALVVTEGQPVQLDCYAGGFPTPRISWRRENNAILPTGGSIYRG 183
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246
+ LKI I KEDRGTYYCVAENGVG+G RRNI VEVEFAPVIT P+PRLGQALQYDMDLE
Sbjct: 184 NTLKISTIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLE 243
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
CHVEAYPPPAIVW+K+D Q L+NNQHYSISHFATAD++TDTTIRVITIEKRQYG Y+CR
Sbjct: 244 CHVEAYPPPAIVWLKDDVQ--LSNNQHYSISHFATADQYTDTTIRVITIEKRQYGEYVCR 301
Query: 307 AANKLGTSEKTVELFESIIPVCPP 330
AANKLGT+E +VELFE+ +PVCPP
Sbjct: 302 AANKLGTAETSVELFETTVPVCPP 325
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 386 | ||||||
| FB|FBgn0010238 | 359 | Lac "Lachesin" [Drosophila mel | 0.841 | 0.905 | 0.677 | 5.8e-121 | |
| FB|FBgn0000071 | 333 | Ama "Amalgam" [Drosophila mela | 0.800 | 0.927 | 0.352 | 5.7e-59 | |
| FB|FBgn0259714 | 467 | CG42368 [Drosophila melanogast | 0.727 | 0.601 | 0.293 | 5.2e-33 | |
| FB|FBgn0259245 | 555 | CG42343 [Drosophila melanogast | 0.670 | 0.466 | 0.265 | 2.8e-32 | |
| FB|FBgn0031837 | 376 | CG11320 [Drosophila melanogast | 0.696 | 0.715 | 0.302 | 1.2e-28 | |
| UNIPROTKB|Q7Z3B1 | 354 | NEGR1 "Neuronal growth regulat | 0.559 | 0.610 | 0.336 | 2e-24 | |
| RGD|708416 | 348 | Negr1 "neuronal growth regulat | 0.559 | 0.620 | 0.327 | 5.3e-24 | |
| MGI|MGI:2444846 | 348 | Negr1 "neuronal growth regulat | 0.559 | 0.620 | 0.327 | 1.1e-23 | |
| UNIPROTKB|Q98919 | 338 | Q98919 "Limbic system-associat | 0.670 | 0.766 | 0.298 | 4.8e-23 | |
| MGI|MGI:1261760 | 341 | Lsamp "limbic system-associate | 0.590 | 0.668 | 0.314 | 4.8e-23 |
| FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 225/332 (67%), Positives = 271/332 (81%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSL 78
T AQRTPTISYI+QEQIKDIGGTVE CSVQYA++Y V+++K D ++P+ +STGS+L
Sbjct: 23 TLAQRTPTISYITQEQIKDIGGTVEFDCSVQYAKEYNVLFLKTD----SDPVFLSTGSTL 78
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
+I+DSRF++RYD SSTY L +KDIQETDAG Y CQV+I +K+SAEV L VRRPPVIS
Sbjct: 79 VIKDSRFSLRYDPNSSTYKLQIKDIQETDAGTYTCQVVISTVHKVSAEVKLSVRRPPVIS 138
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKED 198
DNST+S+V SEG VQ+EC+A G+PTP I+WRRENNAILPT + Y G+ L+I + KED
Sbjct: 139 DNSTQSVVASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRIKSVKKED 198
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIV 258
RGTYYCVA+NGV KG RRNI VEVEFAPVITVP+PRLGQALQYDMDLECH+EAYPPPAIV
Sbjct: 199 RGTYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIEAYPPPAIV 258
Query: 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
W K+D Q L NNQHYSISHFATADE+TD+T+RVIT+EKRQYG Y+C+A N+ G +E V
Sbjct: 259 WTKDDIQ--LANNQHYSISHFATADEYTDSTLRVITVEKRQYGDYVCKATNRFGEAEARV 316
Query: 319 ELFESIIPVCPPQTQPSELLPLRNVNMAVIFA 350
LFE+IIPVCPP + + +V+ A FA
Sbjct: 317 NLFETIIPVCPPACGQAYIAGAEDVS-ATSFA 347
|
|
| FB|FBgn0000071 Ama "Amalgam" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 111/315 (35%), Positives = 189/315 (60%)
Query: 17 NLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGS 76
+L + P IS IS++ + +G +VE C+V+ V W K T + +S +
Sbjct: 17 SLDSVLSAPVISQISKDVVASVGDSVEFNCTVEEVGQLSVSWAKRPSESDTNSVVLSMRN 76
Query: 77 SLIIRDSRFAIRYD----TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132
L + D R+ + T S+ YT +++I+ +D G Y CQV++ K++ ++ LQ++
Sbjct: 77 ILSLPDQRYNVTVTEGPKTGSAIYTFRIQNIEVSDMGPYECQVLVSATEKVTKKLSLQIK 136
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIP 192
PPVI++N+ +S +V+EGQ ++L C A G P P ISW RE+NA++P GG + L+I
Sbjct: 137 TPPVIAENTPKSTLVTEGQNLELTCHANGFPKPTISWAREHNAVMPAGGHLLAEPTLRIR 196
Query: 193 QITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY 252
+ + DRG YYC+A+NG G+ +R I VEVEF P I V +P++ Q + + +LEC V+ Y
Sbjct: 197 SVHRMDRGGYYCIAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSHSAELECSVQGY 256
Query: 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
P P +VW K L +++H+ +++ A++ T + +R+ ++ + +G Y C A NKLG
Sbjct: 257 PAPTVVWHKNGVP--LQSSRHHEVANTASSSGTTTSVLRIDSVGEEDFGDYYCNATNKLG 314
Query: 313 TSEKTVELFESIIPV 327
++ + LF+++IPV
Sbjct: 315 HADARLHLFQTVIPV 329
|
|
| FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 90/307 (29%), Positives = 153/307 (49%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASS--TY 96
G V+L CSV+ Y V WM +++ + ++ + +I R+ R ++ +D T+
Sbjct: 66 GRNVKLACSVKNLGSYKVAWMHFEQSAI-----LTVHNHVITRNPRISVTHDKHDKHRTW 120
Query: 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVD---LQVRRPPVISDNSTRS-LVVSEGQP 152
L + ++QE D G Y CQ+ N ++A+ ++V PP I D T S ++V EG
Sbjct: 121 FLHINNVQEEDRGRYMCQI-----NTVTAKTQYGFVKVVVPPNIDDALTSSDIIVREGDN 175
Query: 153 VQLECFAGGHPTPRISWRRE--NNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAEN 208
V L C A G P P I W+R+ N ++ ++ L++ +I++ G Y C+A N
Sbjct: 176 VTLRCKAKGSPEPTIKWKRDDGNKIVINKTLEVHDLETDSLELERISRLHMGAYLCIASN 235
Query: 209 GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVL 268
GV + I V V+F+P++ +P +G + +++ LEC +EA P W +E+ Q++
Sbjct: 236 GVPPSVSKRIKVSVDFSPMVWIPHQLVGIPIGFNITLECFIEANPTSLNYWTREN-DQMI 294
Query: 269 TNNQHYSISHFATADEFTDTTIRVIT-IEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327
T + Y + T IT ++ YG+Y C A N G + ++L+ S
Sbjct: 295 TESSKYKTETIPGHPSYKATMRLTITNVQSSDYGNYKCVAKNPRGDMDGNIKLYMS---- 350
Query: 328 CPPQTQP 334
PP TQP
Sbjct: 351 SPPTTQP 357
|
|
| FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
Identities = 73/275 (26%), Positives = 145/275 (52%)
Query: 56 VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
V W+K D + ++ +I + R +++++ + T+TL ++ ++ DAG Y CQV
Sbjct: 140 VAWIKADAKAI-----LAIHEHVITNNDRLSVQHNDYN-TWTLNIRGVKMEDAGKYMCQV 193
Query: 116 IIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175
+A +++ + P +I++ ++ ++V EG +L C A GHP P+I+WRRE+
Sbjct: 194 NTDPMKMQTATLEVVIP-PDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGR 252
Query: 176 -ILPTGGSIYR-------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227
I+ GS + G +L + +IT+ + G Y C+A NGV + + ++V F P+
Sbjct: 253 EIIARNGSHQKTKAQSVEGEMLTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQVHFHPL 312
Query: 228 ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTD 287
+ VP +G + D+ L C+VEA P W +E+ + ++ ++ Y+++ +
Sbjct: 313 VQVPNQLVGAPVLTDVTLICNVEASPKAINYWQRENGEMIIAGDR-YALTEKENNMYAIE 371
Query: 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322
+ + ++ +G Y C + N +G +E T+ L+E
Sbjct: 372 MILHIKRLQSSDFGGYKCISKNSIGDTEGTIRLYE 406
|
|
| FB|FBgn0031837 CG11320 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 87/288 (30%), Positives = 136/288 (47%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
+G L C V + V W++VD + +S + +I ++ R +I + T +
Sbjct: 44 VGRDALLTCVVHDLVSFKVAWLRVDTQTI-----LSIQNHVITKNHRISISH-TEHRIWQ 97
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVV-SEGQPVQLE 156
L ++D+QE+D G+Y CQ+ +D+ V PP I D T VV S GQ V L
Sbjct: 98 LKIRDVQESDRGWYMCQINTDPMKSQMGYLDVVV--PPDIVDYQTSQDVVRSTGQNVTLT 155
Query: 157 CFAGGHPTPRISWRRENNA--ILPTGGS--IY--RGSILKIPQITKEDRGTYYCVAENGV 210
C A G P P I+WRRE ++ G ++ G L + Q+ + G Y C+A NGV
Sbjct: 156 CSATGVPMPTITWRREEATPILISDDGDREVFSVEGQNLTLWQVQRSHMGAYLCIASNGV 215
Query: 211 GKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN 270
+ + + V FAP I + L + LEC E+ P W+++ Q+L
Sbjct: 216 PPTVSKRVMLVVNFAPTIWTRYDTIYVGLGQKLTLECITESQPASVNFWLRDS--QLLQG 273
Query: 271 NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
+ S+S T+R IT KR +G YICRA N +G +++ +
Sbjct: 274 GSYESVSVDHVFRIVMRITLRPIT--KRDFGEYICRAKNAMGQTDRII 319
|
|
| UNIPROTKB|Q7Z3B1 NEGR1 "Neuronal growth regulator 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 80/238 (33%), Positives = 112/238 (47%)
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
Y+L ++++ TD G Y C V + + +V L V+ PP I D S + V+EG V L
Sbjct: 101 YSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQVHLTVQVPPKIYDISN-DMTVNEGTNVTL 158
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
C A G P P ISWR I P+ G L I IT++ G Y C AEN V
Sbjct: 159 TCLATGKPEPSISWRH----ISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDV 214
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDL-ECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274
R + V V FAP T+ + + G L C PPPA W K + +++ Q
Sbjct: 215 RKVKVVVNFAP--TIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGE-KKLFNGQQGI 271
Query: 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
I +F+T T V + + +G+Y C AANKLGT+ + +P+ PP T
Sbjct: 272 IIQNFSTRSILT-----VTNVTQEHFGNYTCVAANKLGTTNAS-------LPLNPPST 317
|
|
| RGD|708416 Negr1 "neuronal growth regulator 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 78/238 (32%), Positives = 112/238 (47%)
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
Y+L ++++ TD G Y C V + + +V L V+ PP I D S + ++EG V L
Sbjct: 95 YSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQVHLTVQVPPKIYDISN-DMTINEGTNVTL 152
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
C A G P P ISWR I P+ G L I IT++ G Y C AEN V
Sbjct: 153 TCLATGKPEPAISWRH----ISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDV 208
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDL-ECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274
+ + V V FAP T+ + + G L C PPPA W K + +++ Q
Sbjct: 209 KKVRVVVNFAP--TIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGE-KRLFNGQQGI 265
Query: 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
I +F+T T V + + +G+Y C AANKLGT+ + +P+ PP T
Sbjct: 266 IIQNFSTRSILT-----VTNVTQEHFGNYTCVAANKLGTTNAS-------LPLNPPST 311
|
|
| MGI|MGI:2444846 Negr1 "neuronal growth regulator 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 78/238 (32%), Positives = 112/238 (47%)
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
Y+L ++++ TD G Y C V + + +V L V+ PP I D S + ++EG V L
Sbjct: 95 YSLQIQNVDVTDDGPYTCSVQTQHTPR-TMQVHLTVQVPPKIYDISN-DMTINEGTNVTL 152
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
C A G P P ISWR I P+ G L I IT++ G Y C AEN V
Sbjct: 153 TCLATGKPEPVISWRH----ISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDV 208
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDL-ECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274
+ + V V FAP T+ + + G L C PPPA W K + +++ Q
Sbjct: 209 KKVRVIVNFAP--TIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGE-KRLFNGQQGI 265
Query: 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
I +F+T T V + + +G+Y C AANKLGT+ + +P+ PP T
Sbjct: 266 IIQNFSTRSILT-----VTNVTQEHFGNYTCVAANKLGTTNAS-------LPLNPPST 311
|
|
| UNIPROTKB|Q98919 Q98919 "Limbic system-associated membrane protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 85/285 (29%), Positives = 128/285 (44%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T L+C V+ + V W+ +R+ + I G D R + + Y+L
Sbjct: 46 GDTAILRCFVE-DRSSKVAWL--NRSGI-----IFAGEDKWSLDPRVELE-KRSPLEYSL 96
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF 158
++ + D G Y C V + K S +V L V+ PP IS N + + V+EG V L C
Sbjct: 97 RIQKVDVYDEGSYTCSVQTQHHPKTS-QVYLIVQVPPKIS-NISSDITVNEGSNVTLVCM 154
Query: 159 AGGHPTPRISWRRENNAILPTGGSIYRGS--ILKIPQITKEDRGTYYCVAENGVGKGTRR 216
A G P P I+WR + PTG + G L+I IT+E G Y C A N V +
Sbjct: 155 ANGRPEPVITWRH----LTPTGKE-FEGEEEYLEILGITREQSGKYECKAANEVASADVK 209
Query: 217 NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSI 276
+ V V + P IT K + + L C A P P W ++DT+ N
Sbjct: 210 QVRVTVNYPPTITESKSNEAATGRQAL-LRCEASAVPTPDFEWYRDDTRINSANGLEIK- 267
Query: 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321
+T + + + V + + YG+Y C AANKLG + ++ L+
Sbjct: 268 ---STGSQ---SLLMVANVTEEHYGNYTCVAANKLGVTNASLYLY 306
|
|
| MGI|MGI:1261760 Lsamp "limbic system-associated membrane protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 77/245 (31%), Positives = 110/245 (44%)
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
Y+L ++ + D G Y C V K S +V L V+ PP IS N + + V+EG V L
Sbjct: 94 YSLRIQKVDVYDEGSYTCSVQTQHEPKTS-QVYLIVQVPPKIS-NISSDVTVNEGSNVTL 151
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGS--ILKIPQITKEDRGTYYCVAENGVGKG 213
C A G P P I+WR + P G + G L+I IT+E G Y C A N V
Sbjct: 152 VCMANGRPEPVITWRH----LTPLGRE-FEGEEEYLEILGITREQSGKYECKAANEVSSA 206
Query: 214 TRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQH 273
+ + V V + P IT K + L+C A P P W ++DT+ N
Sbjct: 207 DVKQVKVTVNYPPTITESKSNEATTGR-QASLKCEASAVPAPDFEWYRDDTRINSANGLE 265
Query: 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
+T + +++ V + + YG+Y C AANKLG + ++ LF P Q
Sbjct: 266 IK----STEGQ---SSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFSKYAKTEPDSMQ 318
Query: 334 PSELL 338
E L
Sbjct: 319 VIEFL 323
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q24372 | LACH_DROME | No assigned EC number | 0.6915 | 0.8160 | 0.8774 | yes | N/A |
| Q9W6V2 | NEGR1_CHICK | No assigned EC number | 0.3050 | 0.6839 | 0.75 | yes | N/A |
| Q26474 | LACH_SCHAM | No assigned EC number | 0.8411 | 0.8186 | 0.9054 | N/A | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 386 | |||
| cd04968 | 88 | cd04968, Ig3_Contactin_like, Third Ig domain of co | 4e-17 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 4e-15 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 5e-15 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 5e-15 | |
| cd05731 | 71 | cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig | 6e-14 | |
| pfam13895 | 80 | pfam13895, Ig_2, Immunoglobulin domain | 3e-13 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 4e-13 | |
| cd05851 | 88 | cd05851, Ig3_Contactin-1, Third Ig domain of conta | 1e-12 | |
| cd05876 | 71 | cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik | 2e-11 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 4e-11 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 6e-11 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 1e-10 | |
| cd07693 | 100 | cd07693, Ig1_Robo, First immunoglobulin (Ig)-like | 2e-09 | |
| pfam13927 | 74 | pfam13927, Ig_3, Immunoglobulin domain | 2e-09 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 1e-08 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 1e-08 | |
| cd05730 | 95 | cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig | 8e-08 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 9e-08 | |
| cd05729 | 85 | cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig) | 1e-07 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 2e-07 | |
| cd05856 | 82 | cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I | 2e-07 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 7e-07 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 7e-07 | |
| cd05764 | 74 | cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) | 1e-06 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 2e-06 | |
| cd05736 | 76 | cd05736, Ig2_Follistatin_like, Second immunoglobul | 2e-06 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 3e-06 | |
| pfam07686 | 114 | pfam07686, V-set, Immunoglobulin V-set domain | 3e-06 | |
| cd05723 | 71 | cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)- | 4e-06 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 5e-06 | |
| cd05720 | 104 | cd05720, Ig_CD8_alpha, Immunoglobulin (Ig) like do | 6e-06 | |
| cd05747 | 92 | cd05747, Ig5_Titin_like, M5, fifth immunoglobulin | 8e-06 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 1e-05 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 1e-05 | |
| cd04969 | 73 | cd04969, Ig5_Contactin_like, Fifth Ig domain of co | 2e-05 | |
| cd05763 | 75 | cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) | 2e-05 | |
| cd05852 | 73 | cd05852, Ig5_Contactin-1, Fifth Ig domain of conta | 3e-05 | |
| cd05716 | 98 | cd05716, Ig_pIgR, Immunoglobulin (Ig)-like domain | 4e-05 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 6e-05 | |
| cd05732 | 96 | cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig | 7e-05 | |
| cd05760 | 77 | cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like | 7e-05 | |
| cd05746 | 69 | cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I | 1e-04 | |
| cd05744 | 75 | cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l | 2e-04 | |
| cd05857 | 85 | cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like | 2e-04 | |
| cd05754 | 85 | cd05754, Ig3_Perlecan_like, Third immunoglobulin ( | 2e-04 | |
| cd05745 | 74 | cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig | 2e-04 | |
| pfam07686 | 114 | pfam07686, V-set, Immunoglobulin V-set domain | 3e-04 | |
| cd05714 | 106 | cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like dom | 3e-04 | |
| cd05745 | 74 | cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig | 4e-04 | |
| cd05893 | 75 | cd05893, Ig_Palladin_C, C-terminal immunoglobulin | 4e-04 | |
| cd05734 | 79 | cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li | 4e-04 | |
| cd00099 | 105 | cd00099, IgV, Immunoglobulin variable domain (IgV) | 4e-04 | |
| cd04967 | 91 | cd04967, Ig1_Contactin, First Ig domain of contact | 7e-04 | |
| cd05726 | 90 | cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like | 7e-04 | |
| cd05758 | 98 | cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I | 9e-04 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 0.001 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 0.001 | |
| cd05734 | 79 | cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li | 0.001 | |
| cd05738 | 74 | cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu | 0.001 | |
| cd05730 | 95 | cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig | 0.002 | |
| cd05743 | 78 | cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)- | 0.002 | |
| cd05722 | 95 | cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l | 0.002 | |
| cd05867 | 76 | cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I | 0.002 | |
| cd05736 | 76 | cd05736, Ig2_Follistatin_like, Second immunoglobul | 0.003 | |
| pfam00047 | 62 | pfam00047, ig, Immunoglobulin domain | 0.003 | |
| cd05870 | 98 | cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik | 0.003 | |
| cd05725 | 69 | cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like | 0.004 | |
| cd05741 | 92 | cd05741, Ig_CEACAM_D1_like, First immunoglobulin ( | 0.004 | |
| cd05740 | 91 | cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)- | 0.004 |
| >gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-17
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
T +L GQ V LECFA G+P P+I WR+ + ++ + G++LKIP I ED G
Sbjct: 10 DTYALK---GQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEG 66
Query: 201 TYYCVAENGVGKGTRR 216
TY C AEN GK T +
Sbjct: 67 TYECEAENIKGKDTHQ 82
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-15
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-GSILKIPQITKEDRGTYYCVAE 207
EGQ V L C A G+P P I+W + + LP GS L I ++ ED G Y CVAE
Sbjct: 1 EGQSVTLTCPAEGNPVPNITWLK-DGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAE 59
Query: 208 NGVG 211
N G
Sbjct: 60 NSAG 63
|
Length = 63 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-15
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-----YRGSILKIPQITKE 197
S+ V EG+ V L C A G P P ++W ++ +L G S L I +T E
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEV 222
D GTY C A N G + + V
Sbjct: 62 DSGTYTCAATNSSGSAS-SGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-15
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-----YRGSILKIPQITKE 197
S+ V EG+ V L C A G P P ++W ++ +L G S L I +T E
Sbjct: 2 PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEV 222
D GTY C A N G + + V
Sbjct: 62 DSGTYTCAATNSSGSAS-SGTTLTV 85
|
Length = 85 |
| >gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 6e-14
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYR-GSILKIPQITKEDRGTYYCVAENGVG 211
+ LEC A G PTP ISW + + LKI +++ED G Y C A N +G
Sbjct: 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60
Query: 212 KGTRRNIAVEVE 223
R I+V VE
Sbjct: 61 S-ARHTISVTVE 71
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71 |
| >gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-13
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
PV++ + T VV EG+ V L C A G+P P +W ++ + + + P
Sbjct: 1 KPVLTPSPT---VVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------TPN 51
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
++ ED GTY CVA NG G T + + V
Sbjct: 52 VSAEDSGTYTCVASNGGGGKTSNPVTLTV 80
|
This domain contains immunoglobulin-like domains. Length = 80 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-13
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSI--LKIPQITKE 197
+ + V EG+ + C G P P +SW + + L + Y G L I + +
Sbjct: 8 KDVEVQEGESARFTCTVTGDPDPTVSWFK-DGQPLRSSDRFKVTYEGGTYTLTISNVQPD 66
Query: 198 DRGTYYCVAENGVGK 212
D G Y CVA N G+
Sbjct: 67 DEGKYTCVATNSAGE 81
|
Length = 90 |
| >gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-12
Identities = 31/67 (46%), Positives = 37/67 (55%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENG 209
GQ V LECFA G+P P I WR+ + T G++LKI I ED GTY C AEN
Sbjct: 16 GQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENI 75
Query: 210 VGKGTRR 216
GK +
Sbjct: 76 KGKDKHQ 82
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88 |
| >gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 2e-11
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILPT-GGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211
+ LEC A G PTP + W R + + P + L++ + + D G Y C AEN G
Sbjct: 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60
Query: 212 KGTRRNIAVEVE 223
R + V VE
Sbjct: 61 S-ARHHYTVTVE 71
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-11
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTG-GSIYRGSILKIPQITKEDRGTYYCVAENGVG 211
V+ +C GG P P + WR+E+ LP G I LKI +T D G+Y C AEN VG
Sbjct: 1 VEFQCEVGGDPVPTVLWRKEDGE-LPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVG 59
Query: 212 KGT 214
K
Sbjct: 60 KIE 62
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 57.5 bits (138), Expect = 6e-11
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILP--------TGGSIYRGSILKIPQITKEDRGTYYC 204
V L C A G P P I+W + + + G+ S L I +T ED GTY C
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60
Query: 205 VAENGVGKGTR 215
VA N G +
Sbjct: 61 VASNSAGTVSA 71
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-10
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 227 VITVPKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
PK + G++ C V P P + W K+ Q L ++ + + T +
Sbjct: 3 FTQKPKDVEVQEGESA----RFTCTVTGDPDPTVSWFKDG--QPLRSSDRFKV----TYE 52
Query: 284 EFTDT-TIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
T T TI + + G Y C A N G +E + EL
Sbjct: 53 GGTYTLTISNVQPD--DEGKYTCVATNSAGEAEASAEL 88
|
Length = 90 |
| >gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-09
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISW-------------RRENNAILPTG 180
PP I ++ + L+VS+G P L C A G PTP I W R + +LP+G
Sbjct: 1 PPRIVEHPS-DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSG 59
Query: 181 GSIYRGSILKI--PQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ L++ + + D G Y CVA N +G+ RN ++EV
Sbjct: 60 SLFF----LRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100 |
| >gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-09
Identities = 33/76 (43%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIP 192
PVI+ + S V+ G V L C A GG P P ISW R + +GG GS L +
Sbjct: 1 KPVIT--VSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLS 58
Query: 193 QITKEDRGTYYCVAEN 208
+T ED GTY CVA N
Sbjct: 59 SVTSEDSGTYTCVASN 74
|
This family contains immunoglobulin-like domains. Length = 74 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-08
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 16/101 (15%)
Query: 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD 90
G +V L C + V W K G L+ RF++
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYK-------------QGGKLLAESGRFSVSRS 47
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
ST TL + ++ D+G Y C + S+ L V
Sbjct: 48 --GSTSTLTISNVTPEDSGTYTCAATNS-SGSASSGTTLTV 85
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-08
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 16/101 (15%)
Query: 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD 90
G +V L C + V W K G L+ RF++
Sbjct: 1 PPSVTVKEGESVTLSCEASGSPPPEVTWYK-------------QGGKLLAESGRFSVSRS 47
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
ST TL + ++ D+G Y C + S+ L V
Sbjct: 48 --GSTSTLTISNVTPEDSGTYTCAATNS-SGSASSGTTLTV 85
|
Length = 85 |
| >gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 8e-08
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 134 PPVI-SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSIL 189
PP I + S + + GQ V L C A G P P ++W ++ I GS +
Sbjct: 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEM 60
Query: 190 KIPQITKEDRGTYYCVAENGVGK 212
I + K D Y C+AEN G+
Sbjct: 61 TILDVDKLDEAEYTCIAENKAGE 83
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-08
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 143 RSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDR 199
V+ G+ LEC GHP P +SWR++ + + L I + K D
Sbjct: 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDE 63
Query: 200 GTYYCVAENGVG 211
GTY CVA N VG
Sbjct: 64 GTYKCVATNMVG 75
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-07
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNA---ILPTGG--SIYRGSILKIPQITKE 197
R V G V+L+C A G+P P I+W ++ GG + L + +
Sbjct: 2 RLHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPS 61
Query: 198 DRGTYYCVAENGVG 211
D G Y C+ EN G
Sbjct: 62 DSGKYTCIVENKYG 75
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 2e-07
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-RGSILKIPQITKEDRGTYYCVAEN 208
G ++ EC A G+P P W + N L + I L+I +++ D G Y CVAEN
Sbjct: 14 GSSLRWECKASGNPRPAYRWLK-NGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAEN 72
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-07
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS--ILKIPQITKEDRGTYYCVAE 207
G V+L+C A G+P P I+W ++N + PT R L + + ED G Y C
Sbjct: 9 GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68
Query: 208 NGVGK 212
N G+
Sbjct: 69 NRAGE 73
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-07
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C PPP + W K+ ++L + +S+S + +T+ + + G+Y
Sbjct: 14 LSCEASGSPPPEVTWYKQG-GKLLAESGRFSVSR-----SGSTSTLTISNVTPEDSGTYT 67
Query: 305 CRAANKLGTSEKTVEL 320
C A N G++ L
Sbjct: 68 CAATNSSGSASSGTTL 83
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 7e-07
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C PPP + W K+ ++L + +S+S + +T+ + + G+Y
Sbjct: 14 LSCEASGSPPPEVTWYKQG-GKLLAESGRFSVSR-----SGSTSTLTISNVTPEDSGTYT 67
Query: 305 CRAANKLGTSEKTVEL 320
C A N G++ L
Sbjct: 68 CAATNSSGSASSGTTL 83
|
Length = 85 |
| >gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-06
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILP--TGGSIYRGSILKIPQITKEDRGTYYCVAE 207
GQ L C A G P P I W + ++ + +Y L I T +D G++ C+A
Sbjct: 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60
Query: 208 NGVGKGTRR 216
N G+ T
Sbjct: 61 NAAGEATAT 69
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 45.2 bits (106), Expect = 2e-06
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C PPP I W+K + S + +T+ + + G+Y
Sbjct: 3 LTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTS---SGSSTLTISNVTLEDSGTYT 59
Query: 305 CRAANKLGTSEKTVE 319
C A+N GT +V
Sbjct: 60 CVASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-06
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 155 LECFAGGHPTPRISWRRENNAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAENGV 210
L C A G P PR++W + I P GS L I + ED G Y C+A+N
Sbjct: 3 LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62
Query: 211 G 211
G
Sbjct: 63 G 63
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-06
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILP-----TGGSIYRGSILKIPQITKEDRGTYYC 204
G V L C G P ++W +E + T + L I +T ED GTY C
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60
Query: 205 VA 206
V
Sbjct: 61 VV 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-06
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 39 GGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS-----RFAIRYDTA 92
GG+V L CS + V W K K E + S+ + R + + +
Sbjct: 16 GGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGRVTLSGNGS 75
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ ++L + +++ +D+G Y C V A L V
Sbjct: 76 KNDFSLTISNLRLSDSGTYTCAVSNPNELVFGAGTRLTV 114
|
This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114 |
| >gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-06
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTGG-SIYRGSILKIPQITKEDRGTYYCVAENGVG 211
+ EC G PTP + W + + ++P+ I + L++ + K D G Y C+AEN VG
Sbjct: 2 IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-06
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGTYYCVA 206
G V +EC P P ISW + +L I GS L+I +TK D G Y C A
Sbjct: 1 GGDVIIECKPKAAPKPTISWSK-GTELLTNSSRICIWPDGS-LEILNVTKSDEGKYTCFA 58
Query: 207 ENGVGKG 213
EN GK
Sbjct: 59 ENFFGKA 65
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143197 cd05720, Ig_CD8_alpha, Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-06
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEP--LPISTGSSLIIRD------SRFAIRYD 90
G VELKC V + W+ +P L +GSS I D RF+
Sbjct: 6 GQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS 65
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVII 117
S+++ L +K+ Q+ + GYY C V
Sbjct: 66 --SNSFVLTLKNFQKENEGYYFCSVAS 90
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. Length = 104 |
| >gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 8e-06
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG----GSIYRGSILKIPQITKED 198
RSL VSEG+ + C G P P ++W RE I+ + S S +I ++ D
Sbjct: 11 RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSD 70
Query: 199 RGTYYCVAENGVGK 212
G Y V EN GK
Sbjct: 71 EGNYTVVVENSEGK 84
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-05
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295
GQ++ L C E P P I W+K+ + + +T+ + ++
Sbjct: 2 GQSVT----LTCPAEGNPVPNITWLKDGKP----LPESNRFVA-------SGSTLTIKSV 46
Query: 296 EKRQYGSYICRAANKLG 312
G Y C A N G
Sbjct: 47 SLEDSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 42.5 bits (99), Expect = 1e-05
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 42 VELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101
V L C + W+K + + L R T+S + TL +
Sbjct: 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT------------RVRSSRGTSSGSSTLTIS 48
Query: 102 DIQETDAGYYRCQV 115
++ D+G Y C
Sbjct: 49 NVTLEDSGTYTCVA 62
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
+EC +A P P I W K ++LTN+ I + D ++ ++ + K G Y
Sbjct: 6 IECKPKAAPKPTISWSKGT--ELLTNSSRICI--------WPDGSLEILNVTKSDEGKYT 55
Query: 305 CRAANKLGTSEKTVEL 320
C A N G + T L
Sbjct: 56 CFAENFFGKANSTGSL 71
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 2e-05
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 154 QLECFAGGHPTPRISWRRENNAILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAEN 208
+LEC A GHPTP+I+W+++ P + + I + ED G Y C A+N
Sbjct: 2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN 61
Query: 209 GVG 211
G
Sbjct: 62 TAG 64
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75 |
| >gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 3e-05
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIYRGSILKIPQITKEDRGTYYCVAEN 208
G V +EC P P+ SW + ++ SI+ L+I ITK D G+Y C AEN
Sbjct: 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60
Query: 209 GVGK 212
GK
Sbjct: 61 NRGK 64
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73 |
| >gnl|CDD|143193 cd05716, Ig_pIgR, Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 39 GGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
GG+V + C + Y W K + +S GS + R ++ D + +T
Sbjct: 7 GGSVTIPCPYPPKNRSYEKYWCKWGSAGCC-LIIVSEGSVQSQYEGRVSLTDDPDNGVFT 65
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQ 130
+ + +++ DAG+Y C V + ++ V L
Sbjct: 66 VTLNQLRKEDAGWYWCGVGDDGDQGLTLSVTLV 98
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. Length = 98 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDRGTYYCVA 206
G+ +L+C A G P P I+WR I R G L + + D Y C A
Sbjct: 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60
Query: 207 ENGVG 211
N G
Sbjct: 61 SNVHG 65
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 7e-05
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 148 SEGQPVQLECFAGGHPTPRISWRR-----ENNAILPTGGSIYRG----SILKIPQITKED 198
E + + L C A G P P I+WRR G + RG S L + + D
Sbjct: 14 VELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTD 73
Query: 199 RGTYYCVAENGVG 211
G Y C A N +G
Sbjct: 74 AGRYDCEASNRIG 86
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96 |
| >gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 7e-05
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS----ILKIPQITKEDRGTYYCVAEN 208
V L C GHP P W R+ L G Y S L + +D G YYC A N
Sbjct: 1 VTLRCHIDGHPRPTYQWFRDGTP-LSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHN 59
Query: 209 GVG 211
G
Sbjct: 60 AFG 62
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77 |
| >gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 1e-04
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTGG-SIYRGSILKIPQITKEDRGTYYCVAENGVG 211
VQ+ C A G P P I+W ++ + +G I L I + D+G Y CVA N +G
Sbjct: 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69 |
| >gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 2e-04
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 153 VQLECFAGGHPTPRISWRRENNAIL--PTGGSIYR---GSI-LKIPQITKEDRGTYYCVA 206
V+LEC P P+I W++ N + S+Y+ G I L I KED G Y A
Sbjct: 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60
Query: 207 ENGVG 211
N G
Sbjct: 61 VNEAG 65
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75 |
| >gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG--GSI---YRGSILKIPQITKE 197
+ V V+ C A G+PTP + W + G + L + +
Sbjct: 2 KLHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 61
Query: 198 DRGTYYCVAENGVG 211
D+G Y CV EN G
Sbjct: 62 DKGNYTCVVENEYG 75
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85 |
| >gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 140 NSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKED 198
RS V G V C A P + W R LP+ + G IL I + D
Sbjct: 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG-LPSRAMDFNG-ILTIRNVQLSD 63
Query: 199 RGTYYCVAEN 208
GTY C N
Sbjct: 64 AGTYVCTGSN 73
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85 |
| >gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 2e-04
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 149 EGQPVQLECFAGGHPTPRISWRRENNAI-LPTGGSIYRGSILKIPQITKEDRGTYYCVAE 207
EGQ V C A G+P P I+W + + + + + L+I ++ D+G Y C A
Sbjct: 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAV 60
Query: 208 NGVG 211
N VG
Sbjct: 61 NIVG 64
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74 |
| >gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 3e-04
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 30/105 (28%)
Query: 141 STRSLVVSEGQPVQLEC-FAGGHPTPRISWRR-------------ENNAILPTGGSIYRG 186
R + V+EG V L C F+ + + W + + G ++G
Sbjct: 7 PPRPVTVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKG 66
Query: 187 SI------------LKIPQITKEDRGTYYCVAENGV----GKGTR 215
+ L I + D GTY C N G GTR
Sbjct: 67 RVTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNPNELVFGAGTR 111
|
This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114 |
| >gnl|CDD|143191 cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 3e-04
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132
+L++ D++ D+G YRC+VI GI ++ V+L+VR
Sbjct: 69 SLVITDLRLEDSGRYRCEVIDGIEDE-QDTVELEVR 103
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. There is considerable evidence that HA-binding CSPGs are involved in developmental processes in the central nervous system. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. Length = 106 |
| >gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 4e-04
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
+D C + YP P I W K +Q + + +H +S T+R+ + G
Sbjct: 5 VDFLCEAQGYPQPVIAWTKGGSQLSV-DRRHLVLS---------SGTLRISRVALHDQGQ 54
Query: 303 YICRAANKLGTSEKTVEL 320
Y C+A N +G+ +L
Sbjct: 55 YECQAVNIVGSQRTVAQL 72
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74 |
| >gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 4e-04
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTGGSI------YRGSILKIPQITKEDRGTYYCVA 206
V+LEC G P P+I W++EN ++ + L I TKED G Y A
Sbjct: 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60
Query: 207 ENGVG 211
+N G
Sbjct: 61 KNEAG 65
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75 |
| >gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 4e-04
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 153 VQLECFAGGHPTPRISWRRENNA-------ILPTGGSIY---RGSILKIPQITKEDRGTY 202
V L C A G+P P I W+ G I GS+L I + +ED G Y
Sbjct: 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLL-IKHVLEEDSGYY 59
Query: 203 YCVAENGVG 211
C N VG
Sbjct: 60 LCKVSNDVG 68
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79 |
| >gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 4e-04
Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 31/102 (30%)
Query: 145 LVVSEGQPVQLEC-FAGGHPTPRISWRRENN-------AILPTGGSIYRG---------- 186
L VSEG+ V L C ++G + I W R+ + + GS Y G
Sbjct: 1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR 60
Query: 187 ------SILKIPQITKEDRGTYYCVAENGV-------GKGTR 215
L I + ED YYC G+GTR
Sbjct: 61 DSSKSSFTLTISSLQPEDSAVYYCAVSLSGGTYKLYFGQGTR 102
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 105 |
| >gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 7e-04
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR--GSILKIPQITK-EDRGTYYC 204
EG+ V L C A G P P W I S Y G L I +K +D G Y C
Sbjct: 18 DEGK-VSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQC 76
Query: 205 VAENGVGK 212
+A N VG
Sbjct: 77 LASNIVGT 84
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91 |
| >gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 7e-04
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
+C P PAI W KE +Q +L + Q S + + D TI +++ G YI
Sbjct: 6 FQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTI--TNVQRSDVGYYI 63
Query: 305 CRAANKLGT 313
C+ N G+
Sbjct: 64 CQTLNVAGS 72
|
Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90 |
| >gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 9e-04
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAI------------LPTG 180
PP+I+ S + G ++ECF P P RI W + N + P+
Sbjct: 2 PPIIT--SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP 59
Query: 181 GSIYRGSILKIPQITKED-RGTYYCVAENGVGKGT 214
G + S L I + D + +Y C A N G GT
Sbjct: 60 GGVL--STLTISNTQESDFQTSYNCTAWNSFGSGT 92
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.001
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 20/78 (25%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G +V L C + + W+K + P+ + + S T
Sbjct: 1 EGQSVTLTCPAEGNPVPNITWLK-------DGKPLPESNRFVASGS-------------T 40
Query: 98 LLVKDIQETDAGYYRCQV 115
L +K + D+G Y C
Sbjct: 41 LTIKSVSLEDSGLYTCVA 58
|
Length = 63 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P + ++ G + C+V D V W K + R
Sbjct: 1 PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFK--------------DGQPLRSSDR 46
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
F + Y+ TYTL + ++Q D G Y C
Sbjct: 47 FKVTYE--GGTYTLTISNVQPDDEGKYTCVA 75
|
Length = 90 |
| >gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.001
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF-ATADEFTDTTIRVITIEKRQYGSY 303
L C E YPPP IVW + + QH ++ ++ + + + G Y
Sbjct: 3 LNCSAEGYPPPTIVW---KHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYY 59
Query: 304 ICRAANKLGT 313
+C+ +N +G
Sbjct: 60 LCKVSNDVGA 69
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79 |
| >gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Score = 36.9 bits (85), Expect = 0.001
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 157 CFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGTYYCVAENGVG 211
C A G+P P I+W ++ + T R L+I + D+G Y CVA N G
Sbjct: 5 CAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG 62
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74 |
| >gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.002
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C + +P P + W K D + + + + YS + ++ ++ TI ++K Y
Sbjct: 23 LACDADGFPEPTMTWTK-DGEPIESGEEKYSFN-----EDGSEMTIL--DVDKLDEAEYT 74
Query: 305 CRAANKLGTSEKTVEL 320
C A NK G E + L
Sbjct: 75 CIAENKAGEQEAEIHL 90
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95 |
| >gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.002
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 150 GQPVQLECFAGGHPTPRISWR--------RENNAILPTGGSIYRGSILKIPQITKEDRGT 201
G+ V+ C A G PTP I+WR +I GG G+ L I + + D+G
Sbjct: 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGG---YGT-LTIRDVKESDQGA 56
Query: 202 YYCVAENGVG 211
Y C A N G
Sbjct: 57 YTCEAINTRG 66
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78 |
| >gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.002
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAI---------LPTGGSIYRGSILKIPQITKEDRG 200
G PV L C A G P P+I W+++ + GS+ S++ + K D G
Sbjct: 14 GGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHS-KHNKPDEG 72
Query: 201 TYYCVAENG 209
Y CVA+N
Sbjct: 73 FYQCVAQND 81
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95 |
| >gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Score = 36.4 bits (84), Expect = 0.002
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDRGTYYCVA 206
G+ +L+C G PTP I+W I T R L + + D Y C A
Sbjct: 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60
Query: 207 EN 208
N
Sbjct: 61 RN 62
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76 |
| >gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Score = 36.1 bits (83), Expect = 0.003
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L CH E P P + W+K +T ++ A E + +R G+Y
Sbjct: 3 LRCHAEGIPLPRLTWLKNGMD--ITPKLSKQLTLIANGSELHISNVRY-----EDTGAYT 55
Query: 305 CRAANKLGTSEKTVELF 321
C A N+ G E LF
Sbjct: 56 CIAKNEAGVDEDISSLF 72
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76 |
| >gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 35.6 bits (82), Expect = 0.003
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G +V L CSV V W K G L +S + S+ TL
Sbjct: 1 GSSVTLTCSVSGPPQVDVTWFK-------------EGKGLE--ESTTVGTDENRVSSITL 45
Query: 99 LVKDIQETDAGYYRCQV 115
+ ++ D+G Y C V
Sbjct: 46 TISNVTPEDSGTYTCVV 62
|
Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62 |
| >gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Score = 36.5 bits (84), Expect = 0.003
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL-------PTGGSIYRG----SILKI 191
++ E L C A G P P I+W+R ++ P G +G S L I
Sbjct: 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHI 68
Query: 192 PQITKEDRGTYYCVAENGVG 211
+ D G Y C A + +G
Sbjct: 69 KDVKLSDSGRYDCEAASRIG 88
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98 |
| >gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 35.5 bits (82), Expect = 0.004
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
+ +C V P P ++W KED + D D ++++ + GSY
Sbjct: 2 EFQCEVGGDPVPTVLWRKEDGE--------LPKGRAEILD---DKSLKIRNVTAGDEGSY 50
Query: 304 ICRAANKLGTSEKTVEL 320
C A N +G E + L
Sbjct: 51 TCEAENMVGKIEASASL 67
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69 |
| >gnl|CDD|143218 cd05741, Ig_CEACAM_D1_like, First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 56 VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
+ W K V + ++ + ++ R T +LL++++ + D+G Y Q+
Sbjct: 18 ITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRE-TIYPNGSLLIQNLTKEDSGTYTLQI 76
Query: 116 IIGINNKISAEVDLQV 131
I +A+ L+V
Sbjct: 77 ISTNGVTENAKFFLRV 92
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D1 Ig-like domain. Also belonging to this group is the N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84-like family. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. SLAM family proteins are organized as an extracellular domain with having two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region having tyr-based motifs. The extracellular domain is organized as a membrane-distal Ig variable (IgV) domain that is responsible for ligand recognition and a membrane-proximal truncated Ig constant-2 (IgC2) domain. Length = 92 |
| >gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Score = 36.1 bits (83), Expect = 0.004
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSIL 189
+P + S+NS + + QPV L C A G T I W NN L + L
Sbjct: 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQAT-YIWW--VNNGSLLVPPRLQLSNDNRTL 57
Query: 190 KIPQITKEDRGTYYCVAENGVGK 212
+T+ D G Y C A N V
Sbjct: 58 TFNNVTRSDTGHYQCEASNEVSN 80
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4194|consensus | 873 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 100.0 | |
| KOG4221|consensus | 1381 | 99.97 | ||
| KOG4222|consensus | 1281 | 99.97 | ||
| KOG4194|consensus | 873 | 99.95 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.93 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.89 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.87 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.78 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.7 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.69 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.67 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.65 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.65 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.64 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.63 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.63 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.63 | |
| KOG3515|consensus | 741 | 99.62 | ||
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.62 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.62 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.62 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.61 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.61 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.61 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.61 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.61 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.61 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.6 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.6 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.6 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.6 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.6 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.6 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.6 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.59 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.59 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.59 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.59 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.58 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.58 | |
| KOG3515|consensus | 741 | 99.56 | ||
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.56 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.56 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.56 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.56 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.55 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.55 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.55 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.55 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.55 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.54 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.54 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.54 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.54 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.54 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.54 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.54 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.54 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.54 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.54 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.53 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.53 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.53 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.52 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.52 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.52 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.52 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.51 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.51 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.51 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.51 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.5 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.5 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.5 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.5 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.5 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.49 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.49 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.49 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.49 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.49 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.49 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.49 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.49 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.48 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.48 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.48 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.48 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.47 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.46 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.46 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.46 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.46 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.46 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.45 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.45 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.45 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.45 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.44 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.44 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.44 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.44 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.44 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.44 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.43 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.43 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.43 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.43 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.43 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.42 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.42 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.42 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.42 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.42 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.42 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.41 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.41 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.41 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.41 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.41 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.41 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.41 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.4 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.4 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.4 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.4 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.4 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.39 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.39 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.39 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.39 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.39 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.39 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.39 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.38 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.38 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.38 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.38 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.38 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.38 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.37 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.37 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.37 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.37 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.36 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.35 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.35 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.35 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.35 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.34 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.34 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.33 | |
| PHA03376 | 221 | BARF1; Provisional | 99.33 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.32 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.31 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.3 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.3 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.3 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.3 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.29 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.28 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.28 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.28 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.28 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.27 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.27 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.27 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 99.27 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.26 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.26 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 99.26 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 99.26 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.25 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.25 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.24 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.24 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.24 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.22 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 99.22 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.22 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 99.21 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.21 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.21 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 99.2 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 99.2 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.19 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.18 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.18 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.17 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.17 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.17 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 99.15 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 99.15 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 99.14 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.14 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.13 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.13 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 99.13 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.12 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.12 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 99.12 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.11 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 99.1 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 99.1 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 99.09 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 99.08 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 99.08 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 99.08 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 99.08 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 99.07 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 99.07 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.06 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 99.06 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 99.06 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 99.06 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 99.06 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.06 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 99.05 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 99.05 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.05 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 99.04 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 99.04 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 99.04 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.04 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 99.03 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 99.03 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 99.02 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 99.02 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 99.01 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 99.01 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 99.01 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 99.0 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 99.0 | |
| smart00409 | 86 | IG Immunoglobulin. | 99.0 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 99.0 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 99.0 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.99 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.97 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.97 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.96 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.95 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.93 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 98.92 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.91 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.9 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.9 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.9 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.89 | |
| PHA03376 | 221 | BARF1; Provisional | 98.87 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.87 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.86 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.86 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.86 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.86 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 98.84 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.81 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.81 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.8 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.8 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.77 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.77 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.75 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.75 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.75 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.74 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.74 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 98.74 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.73 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.72 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.71 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.69 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 98.68 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 98.67 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.65 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.65 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.63 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.62 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.62 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 98.62 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.58 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 98.58 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.57 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.56 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.55 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.54 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 98.52 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.52 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.51 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.5 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.5 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.49 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 98.47 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.47 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 98.45 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.43 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.43 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 98.42 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.41 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.4 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 98.39 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.36 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.35 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 98.35 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.34 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.34 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.33 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.28 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.28 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 98.26 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.26 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 98.24 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.24 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 98.23 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 98.21 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.2 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 98.19 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.19 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 98.18 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 98.16 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 98.14 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 98.14 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 98.13 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 98.1 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 98.09 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 98.08 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 98.07 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 98.06 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.06 | |
| KOG1480|consensus | 909 | 98.05 | ||
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.05 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 98.03 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 98.02 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 98.01 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.01 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 98.0 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.96 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.95 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 97.92 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.9 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.89 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.87 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 97.85 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 97.84 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.82 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.82 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.77 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 97.77 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 97.74 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 97.73 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.65 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 97.64 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.64 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.59 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.59 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 97.58 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.56 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 97.52 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.5 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.47 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 97.47 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 97.43 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 97.41 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.41 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 97.36 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 97.32 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 97.3 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.27 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 97.26 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.15 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 97.15 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 97.11 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.09 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 97.02 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 97.0 | |
| KOG1480|consensus | 909 | 96.98 | ||
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 96.98 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 96.98 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 96.81 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 96.78 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 96.58 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 96.36 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 96.15 | |
| KOG4597|consensus | 560 | 95.91 | ||
| KOG0613|consensus | 1205 | 95.89 | ||
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 95.46 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 95.18 | |
| PHA03189 | 348 | UL14 tegument protein; Provisional | 95.13 | |
| cd05890 | 98 | Ig2_Nectin-1_like Second immunoglobulin (Ig) domai | 95.09 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 94.94 | |
| KOG0613|consensus | 1205 | 94.83 | ||
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 94.78 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 94.63 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 94.34 | |
| KOG4597|consensus | 560 | 94.02 | ||
| PF03921 | 91 | ICAM_N: Intercellular adhesion molecule (ICAM), N- | 93.41 | |
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 93.38 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 93.19 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 93.16 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 93.13 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 92.99 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 92.04 | |
| KOG1026|consensus | 774 | 91.92 | ||
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 91.83 | |
| cd05890 | 98 | Ig2_Nectin-1_like Second immunoglobulin (Ig) domai | 90.61 | |
| PHA03240 | 258 | envelope glycoprotein M; Provisional | 89.9 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 89.37 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 89.34 | |
| PF03921 | 91 | ICAM_N: Intercellular adhesion molecule (ICAM), N- | 87.77 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 87.46 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 86.36 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 86.15 | |
| PHA03112 | 141 | IL-18 binding protein; Provisional | 85.39 | |
| PF02010 | 440 | REJ: REJ domain; InterPro: IPR002859 The REJ (Rece | 84.98 | |
| PHA03189 | 348 | UL14 tegument protein; Provisional | 83.93 | |
| PF02440 | 63 | Adeno_E3_CR1: Adenovirus E3 region protein CR1; In | 80.69 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=322.09 Aligned_cols=333 Identities=22% Similarity=0.363 Sum_probs=277.5
Q ss_pred cccCCeeeeecc-ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 21 AQRTPTISYISQ-EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 21 ~~~~p~i~~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
...+|.+.+..+ ......|+.|.|.|-+.|.|.++|.|.|.+...... +... ......|.
T Consensus 237 ~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~---------------r~~~----~~~~~vL~ 297 (1051)
T KOG3513|consen 237 REYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR---------------RATY----SNYGKVLK 297 (1051)
T ss_pred cccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc---------------ceee----eccccEEE
Confidence 345566666544 556889999999999999999999999988743111 1111 11233899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~ 179 (386)
|.+++.+|+|.|+|.+.|..+ .....+.+.|+.+|..... +....+..|++++|.|.+.|.|.|.++|++||.++...
T Consensus 298 I~nv~~~D~G~Y~C~AeN~~G-~~~~~~~v~v~a~P~w~~~-~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~ 375 (1051)
T KOG3513|consen 298 IPNVQYEDAGEYECIAENSRG-SATHSGHVTVYAPPYWLQK-PQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPA 375 (1051)
T ss_pred ecccCcCCCeEEEEEEecccc-cceeeEEEEEecCchhhcc-cceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCcc
Confidence 999999999999999998866 6688899999999987764 55677889999999999999999999999999999876
Q ss_pred Cc---eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec-ceEeeCCCc--ccccCCCcEEEEEEEEecC
Q psy8823 180 GG---SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA-PVITVPKPR--LGQALQYDMDLECHVEAYP 253 (386)
Q Consensus 180 ~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~--~~~~~g~~~~l~C~~~g~p 253 (386)
.. .....+.|.|.+++..|+|.|+|.|+|..|. ....+.|.|... |.+...+.. ..+..|..+.|.|...+.|
T Consensus 376 ~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~-i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP 454 (1051)
T KOG3513|consen 376 ERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGT-IYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASP 454 (1051)
T ss_pred CCCcceEEeCCEEEEEecccccCeEEEeeeecccce-EeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCC
Confidence 66 6778899999999999999999999999998 567788888765 666554433 4677899999999999999
Q ss_pred CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCC
Q psy8823 254 PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQ 333 (386)
Q Consensus 254 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~ 333 (386)
.|.+.|.+++.. +.++.++.+. .+++|.|.+++.+|+|.|+|.|+|..|.++....|.|++.+.....+.
T Consensus 455 ~p~~~W~k~~~~--~~~~~r~~i~--------edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~ 524 (1051)
T KOG3513|consen 455 KPKVSWLKGGEK--LLQSGRIRIL--------EDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPS 524 (1051)
T ss_pred cceEEEEcCCcc--cccCceEEEC--------CCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccc
Confidence 999999999985 7777777764 588999999999999999999999999999999999999998888778
Q ss_pred CceeecCcceeeeEEecCCC-----CCcccccceeeec--ccce---------eeeeeeeecccccCC
Q psy8823 334 PSELLPLRNVNMAVIFAEQP-----TSWEPQRKQLNCS--SLLY---------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 334 ~~~~~~~~~~~~~c~~~~~p-----~~W~~~~~~l~~~--~~~~---------~~~i~~v~~~d~~~~ 385 (386)
...+..|..+.|.|.+...+ +.|.+||..+... ..+. .|+|.+|..+|+.-|
T Consensus 525 ~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y 592 (1051)
T KOG3513|consen 525 NTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKY 592 (1051)
T ss_pred hhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceE
Confidence 88899999999999998777 5899999965533 1111 399999999998765
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=308.53 Aligned_cols=331 Identities=26% Similarity=0.382 Sum_probs=258.4
Q ss_pred Ceeeeeccceee-ecCC--cEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 25 PTISYISQEQIK-DIGG--TVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 25 p~i~~~~~~~~v-~~G~--~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
|.|..++.+..+ ..-+ .+.|.|.+.|+|.+.+.|++++....... ..++... .++|.|.
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~------------~~~~~~~------~G~lvI~ 101 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTE------------YPRVSVL------GGTLVIT 101 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeeccccc------------ccceeee------cCceEec
Confidence 777777775543 2323 39999999999999999999997753211 1111111 2266666
Q ss_pred ccC-CCCCeEEEEEeEEcccceeeeEEEEEEe------------------------------------------------
Q psy8823 102 DIQ-ETDAGYYRCQVIIGINNKISAEVDLQVR------------------------------------------------ 132 (386)
Q Consensus 102 ~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------------------------------------------------ 132 (386)
+.. ..|.|.|+|.+.|..+...+..+.|...
T Consensus 102 ~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~ 181 (1051)
T KOG3513|consen 102 NPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQ 181 (1051)
T ss_pred CCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccc
Confidence 666 7788888888877655544443333320
Q ss_pred ---------------------------------------------------------cCCeeecCCCceEEEeCCccEEE
Q psy8823 133 ---------------------------------------------------------RPPVISDNSTRSLVVSEGQPVQL 155 (386)
Q Consensus 133 ---------------------------------------------------------~~p~~~~~~~~~~~~~~g~~v~l 155 (386)
.+|.+....+.......|+.+.|
T Consensus 182 ~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~L 261 (1051)
T KOG3513|consen 182 IDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKL 261 (1051)
T ss_pred cCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEE
Confidence 11112222233456678999999
Q ss_pred EEEeeeeCCCeEEEEEcCeeeCCC-CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCc
Q psy8823 156 ECFAGGHPTPRISWRRENNAILPT-GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR 234 (386)
Q Consensus 156 ~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~ 234 (386)
.|-+.|+|-|++.|.|.+...... ......+..|.|.+++.+|+|.|.|.++|..|. ....+.+.|+.+|.....+..
T Consensus 262 ECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~-~~~~~~v~v~a~P~w~~~~~d 340 (1051)
T KOG3513|consen 262 ECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS-ATHSGHVTVYAPPYWLQKPQD 340 (1051)
T ss_pred EEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc-ceeeEEEEEecCchhhcccce
Confidence 999999999999999988853332 233345778999999999999999999999995 778899999999999999999
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCce---eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQH---YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
..+..|+.+++.|.+.|.|.|+++|++|+.+ +....+ +.+ ..+.|.|++++..|+|.|.|.|+|..
T Consensus 341 ~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~p--l~~~~r~~~~~i---------~~g~L~is~v~~~dsg~YQC~A~Nk~ 409 (1051)
T KOG3513|consen 341 TEADTGSNVTLECKASGKPNPTVKWLKNGEP--LEPAERDPRYKI---------DDGTLIISNVQESDSGVYQCIAENKY 409 (1051)
T ss_pred eEecCCCCeEEEEEecCCCCCceEEeeCCee--cCccCCCcceEE---------eCCEEEEEecccccCeEEEeeeeccc
Confidence 9999999999999999999999999999998 444433 333 57889999999999999999999999
Q ss_pred CceeeEEEEEEEec-CCCCCCCCC--ceeecCcceeeeEEecCCC---CCcccccceeeecccce-----eeeeeeeecc
Q psy8823 312 GTSEKTVELFESII-PVCPPQTQP--SELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY-----QCVLPLVDRQ 380 (386)
Q Consensus 312 g~~~~~~~l~v~~~-p~~~~~~~~--~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~-----~~~i~~v~~~ 380 (386)
|..-+++.|.|... |..+..+.. ..+..|+.+.+.|.+.+.| ++|.++++.+..++|+. .|.|.+++++
T Consensus 410 G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~ 489 (1051)
T KOG3513|consen 410 GTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRS 489 (1051)
T ss_pred ceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcc
Confidence 99999999999876 655554433 4677899999999999999 79999999888888876 6999999999
Q ss_pred cccCC
Q psy8823 381 DRLMH 385 (386)
Q Consensus 381 d~~~~ 385 (386)
||..|
T Consensus 490 DaG~Y 494 (1051)
T KOG3513|consen 490 DAGKY 494 (1051)
T ss_pred cCcEE
Confidence 99876
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=261.80 Aligned_cols=336 Identities=17% Similarity=0.283 Sum_probs=260.2
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
+..+-.|.++|.+ +.+|.++.|.|..... ..+.|.|.+++..+... .+.+... -.|++|
T Consensus 38 ~~~~~~f~~ep~d--~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~------------~d~~~~~-----LsNgSl 98 (1381)
T KOG4221|consen 38 ANTPLQFLLEPSD--AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEV------------YDDRRQL-----LSNGSL 98 (1381)
T ss_pred ccCcceEEecccc--cccccceEEeccccccCCCCeeEEEccCchhhhhh------------hhhHHhh-----ccCCce
Confidence 3445556666664 4899999999997644 36779999988765321 1111111 234478
Q ss_pred EEcccCC-----CCCeEEEEEeEEc-ccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc
Q psy8823 99 LVKDIQE-----TDAGYYRCQVIIG-INNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE 172 (386)
Q Consensus 99 ~i~~~~~-----~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~ 172 (386)
.|.++.. .|.|.|+|.+.-. .+.-.+..+.|.+...+.+... .....+..|+++.|.|.+.+.+.+.+.|.++
T Consensus 99 ~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~-~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn 177 (1381)
T KOG4221|consen 99 YISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQ-PESTTLLYGQTALFSCEVNAEPVPTIMWLKN 177 (1381)
T ss_pred eEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccC-ccceeEecCCcEEEEEEEcCccCceeEEecc
Confidence 8888876 8899999999864 3455677778877766655543 4556788999999999999988889999999
Q ss_pred CeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce------EeeCCCcccccCCCcEEE
Q psy8823 173 NNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV------ITVPKPRLGQALQYDMDL 245 (386)
Q Consensus 173 ~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~~~l 245 (386)
...+...... ...++.|.|.++...|.|.|+|.++++.....+....+.|...|. +...+....+.+|+++.|
T Consensus 178 ~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~l 257 (1381)
T KOG4221|consen 178 DQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVL 257 (1381)
T ss_pred cccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEE
Confidence 9877655532 235788999999999999999999998777667778888774442 344556677889999999
Q ss_pred EEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 246 ~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
.|.+.|.|.|.|.|.+|+..+.... .++.. ...+.|.|.+++.+|+|.|+|.|+|..-...++..|.|..+
T Consensus 258 eCvvs~~p~p~v~Wlrng~~i~~ds-~rivl--------~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~ 328 (1381)
T KOG4221|consen 258 ECVVSGVPKPSVKWLRNGEKISVDS-YRIVL--------VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAP 328 (1381)
T ss_pred EEEecCCCCCceEEeeCCeeeeecc-eEEEE--------ecccceEEeccccccCceEEEEecCCCcccccceEEEEEcC
Confidence 9999999999999999999855444 33332 14778999999999999999999997666777788888888
Q ss_pred CCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccce-----eeeeeeeecccccCC
Q psy8823 326 PVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY-----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 326 p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~-----~~~i~~v~~~d~~~~ 385 (386)
|..+..+....+..+..+.|.|.+.|.| +.|+|||..+..++... .|.|--+.+-|++||
T Consensus 329 P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~y 396 (1381)
T KOG4221|consen 329 PGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFY 396 (1381)
T ss_pred CCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhh
Confidence 9988888888888899999999999999 58999999998876553 266666677777765
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=246.75 Aligned_cols=295 Identities=23% Similarity=0.415 Sum_probs=234.2
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (386)
.....|.|..+|....+..|++++|+|.+.++ .+..+.|.++++...... ...... .....|.....+...-.+.
T Consensus 499 ~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~--ved~a~-~~~q~r~~~~~e~~~~~~~ 575 (873)
T KOG4194|consen 499 DDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVD--VEDFAT-FLSQNRNGTFGEREEYTAI 575 (873)
T ss_pred cCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccc--hhcchh-hhhhhccCccchhhhhhhe
Confidence 35567888888888889999999999999863 455699999887543211 111111 1111111111112223447
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL 177 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~ 177 (386)
|.+.|+...|+|.|+|++.|..+...+..++++|...|.+... +..+++..|+.+.|.|.+.|.|.|++.|.|+|+...
T Consensus 576 L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtkt-P~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdF 654 (873)
T KOG4194|consen 576 LHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKT-PEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDF 654 (873)
T ss_pred eeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccC-cccceeecccceeeeeeccCCCCcceeehhcCCCCC
Confidence 9999999999999999999999999999999999999988765 567889999999999999999999999999988743
Q ss_pred CCCc--e---EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEec
Q psy8823 178 PTGG--S---IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY 252 (386)
Q Consensus 178 ~~~~--~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 252 (386)
+... + ......+.|.|++.+|.|.|+|.+.|..|. .+...++.|...|.+..+.....+..|+++.|.|.+.|.
T Consensus 655 PAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~ 733 (873)
T KOG4194|consen 655 PAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGA 733 (873)
T ss_pred chhhhheeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEecCCcccccccceEEEecceEEEEEecCCC
Confidence 3321 1 124678999999999999999999999998 678899999999999999999999999999999999999
Q ss_pred CC-CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCC
Q psy8823 253 PP-PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVC 328 (386)
Q Consensus 253 p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 328 (386)
|+ |.+.|+|+++++.+.....+. ..+..|.+.+...+|+|.|+|...|..|.-...+.+.+...+.-
T Consensus 734 ~a~pr~~W~k~d~pil~t~rh~f~---------d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 734 PADPRLEWFKEDKPILITERHTFP---------DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred CCCccccccCCCCceEEeecccCC---------CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCc
Confidence 88 899999999996555443332 24677889999999999999999999999988888877655543
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=255.96 Aligned_cols=343 Identities=23% Similarity=0.338 Sum_probs=268.0
Q ss_pred hhcccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 17 NLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 17 ~~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
.+.....+|.|..-|.++++..|+.++|.|.+.+.|.++++|||+|..... ...+ +.|+.+- ++
T Consensus 24 ~~r~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~----~e~~------shR~~lp------~g 87 (1281)
T KOG4222|consen 24 SLRAQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFK----GEPG------SHRFLLP------DG 87 (1281)
T ss_pred ccccccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCC----CCCC------CcceecC------Cc
Confidence 344556788898889999999999999999999999999999999963211 0111 1111110 11
Q ss_pred EEEEccc-----CCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEE
Q psy8823 97 TLLVKDI-----QETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWR 170 (386)
Q Consensus 97 ~L~i~~~-----~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~ 170 (386)
+|.+..+ ...|.|.|+|++.|..+...+....|.+-..+.-....+..+.+..|+.+.|.|.- .+.|.+.+.|.
T Consensus 88 sLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~ 167 (1281)
T KOG4222|consen 88 SLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWV 167 (1281)
T ss_pred cEEEEecccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceee
Confidence 2332221 12399999999998877776766666655434333333455678889999999977 68889999999
Q ss_pred EcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEE
Q psy8823 171 RENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC 247 (386)
Q Consensus 171 ~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C 247 (386)
|+|+.+.... .....++.|.|.+++..|.|.|.|++.|..+...+....+.|+.+|.+...+....+..|..+.+.|
T Consensus 168 Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c 247 (1281)
T KOG4222|consen 168 KDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDC 247 (1281)
T ss_pred cCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeeccccccccc
Confidence 9999876222 2235688999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 248 ~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
.+.|.|.|++.|.+++.. +. ..++.+.. .+.+|.|.++.+.|.|.|.|.+.|..|..+++..+.|...|.
T Consensus 248 ~v~GdP~P~Vrwkk~~~~--~P-~~ry~i~~-------d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~ 317 (1281)
T KOG4222|consen 248 RVGGDPQPTVRWKKDDPS--LP-RSRYSILD-------DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPS 317 (1281)
T ss_pred ccCCCCCCceeeeccCCC--CC-ccceeeee-------ccccccccccCCCcccceeeeccccccccccccceEEecCcc
Confidence 999999999999997665 32 23333321 357799999999999999999999999999999999999998
Q ss_pred CCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeec------ccce-------eeeeeeeecccccCC
Q psy8823 328 CPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCS------SLLY-------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~------~~~~-------~~~i~~v~~~d~~~~ 385 (386)
.-..+....+..+..++|.|.+.++| +-|.+.|..--.+ .+.+ .|.|.+|++.|...|
T Consensus 318 f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Y 391 (1281)
T KOG4222|consen 318 FGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYY 391 (1281)
T ss_pred cccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceE
Confidence 88888888888999999999999999 5799877653322 1111 699999999998654
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=220.13 Aligned_cols=259 Identities=17% Similarity=0.278 Sum_probs=172.7
Q ss_pred cceeeecCCcEEEEEEE-----eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 32 QEQIKDIGGTVELKCSV-----QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
....+.+|+.+.|.|.+ .+.+.+.++|+|++..... .... + ....|.|.+++.+
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~----------------~~~~--~---~g~~l~i~~~~~~ 92 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR----------------IIPI--D---NGSNMLILNPTQS 92 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce----------------EEEc--c---CCceEEEcccCcc
Confidence 44457799999999996 5677788999998743210 0000 0 1115889999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecC--CeeecCCCceEEEeCCccEEEEEEe-----eeeCCCeEEEEEcCeeeCCC
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRP--PVISDNSTRSLVVSEGQPVQLECFA-----GGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~~~~~~~~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~ 179 (386)
|+|.|+|.+.|..+. ....+.|.|... +.+.. ......+.+|..+.|.|.. .+.+++.++|+++.. +. .
T Consensus 93 DsG~Y~C~a~N~~g~-~~~s~~L~V~~~~~~~~~~-~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~ 168 (326)
T PHA02785 93 DSGIYICITKNETYC-DMMSLNLTIVSVSESNIDL-ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-N 168 (326)
T ss_pred cCeEEEEEEECCCcc-eEEEEEEEEEecCCCccce-eeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-C
Confidence 999999999976533 345566666543 22221 1223346789999999962 456888999988642 22 2
Q ss_pred CceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCce---eeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEec
Q psy8823 180 GGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGT---RRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAY 252 (386)
Q Consensus 180 ~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 252 (386)
.... ..++.|.|.+++.+|+|.|+|.+.|..+... ...+.+.|.. +|.+ ..+....+..|+.++|.|.+.|.
T Consensus 169 ~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~ 247 (326)
T PHA02785 169 KRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLR 247 (326)
T ss_pred cceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECC
Confidence 2221 2346899999999999999999999776532 2334455542 3333 33455667789999999999998
Q ss_pred CCC---eeEEEeCCeeeeeec-C--ceeEEeeee---ecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 253 PPP---AIVWIKEDTQQVLTN-N--QHYSISHFA---TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 253 p~~---~~~W~~~~~~~~~~~-~--~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
|.+ .+.|++||..+.... . .++...... .........|.|.+++.+|.|.|+|.|.|..|....
T Consensus 248 P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 248 PPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred CCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEe
Confidence 874 799999998732111 1 111111100 111123578999999999999999999999865544
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=237.08 Aligned_cols=275 Identities=27% Similarity=0.430 Sum_probs=221.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
..+.+...+.+..+..|+.+.|.|.+.+.+.+.+.|.++...+. .++++....+ +.|.|.+
T Consensus 139 ~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~--------------~~~r~i~lps-----G~L~I~~ 199 (1381)
T KOG4221|consen 139 GLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLP--------------LDSRVIVLPS-----GALEISG 199 (1381)
T ss_pred ccCccccCccceeEecCCcEEEEEEEcCccCceeEEeccccccc--------------CCCcEEEcCC-----CcEEecc
Confidence 45667777888889999999999999987777899999886442 2234433333 2899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe-----eecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV-----ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL 177 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~ 177 (386)
++..|.|.|+|.+.+......+..+.|.|...|. .....+....+.+|+.+.|.|.+.+.|.|.|.|.+|+..+.
T Consensus 200 ~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~ 279 (1381)
T KOG4221|consen 200 LQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKIS 279 (1381)
T ss_pred cccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeee
Confidence 9999999999999987777778888888874332 12344566778899999999999999999999999998886
Q ss_pred CCCceE--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC
Q psy8823 178 PTGGSI--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 178 ~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
...... ...+.|.|.+++..|+|.|+|.|.|.... ......+.|..+|.+...+....+.++.++.|.|.+.|.|.|
T Consensus 280 ~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~-idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p 358 (1381)
T KOG4221|consen 280 VDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDS-IDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIP 358 (1381)
T ss_pred ecceEEEEecccceEEeccccccCceEEEEecCCCcc-cccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcc
Confidence 554222 24678999999999999999999995554 456778889999999888888888899999999999999999
Q ss_pred eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 256 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
.+.|++||.. +.....+.+. .+..|.|..+-..|.|.|.|.++|..|...+...+.+...|.
T Consensus 359 ~v~w~kNgd~--~ipsdy~ki~--------~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~ 420 (1381)
T KOG4221|consen 359 TVRWYKNGDR--IIPSDYFKIV--------GGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA 420 (1381)
T ss_pred eEEEEecCcc--cCcccceEec--------CCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc
Confidence 9999999988 4445555543 233388888899999999999999999999988886654443
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-31 Score=238.56 Aligned_cols=341 Identities=21% Similarity=0.348 Sum_probs=256.2
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
+-....|.+.+.+..+..|+.++|.|.-. +.+.+.+.|.|++..+.. ....++... ..+.|.
T Consensus 128 avlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~------------~~~~~~~li-----sgG~Ll 190 (1281)
T KOG4222|consen 128 AVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDH------------YDVPIIALI-----SGGNLL 190 (1281)
T ss_pred EEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccc------------ccceeEEEe-----cCCcEE
Confidence 34445677778888899999999999865 567888999999987630 011112111 123799
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~ 179 (386)
|.+++..|+|.|.|++.|..+...+....|.|.++|.+... +....+..|..+.+.|.+.|.|.+.+.|.+++..+...
T Consensus 191 IsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~r-p~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ 269 (1281)
T KOG4222|consen 191 ISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKR-PKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRS 269 (1281)
T ss_pred EeccccCCCceeeeeecccccccccccceeeeccCCccccc-cccceeecccccccccccCCCCCCceeeeccCCCCCcc
Confidence 99999999999999999988888899999999999988754 45667889999999999999999999999977766544
Q ss_pred CceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeE
Q psy8823 180 GGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIV 258 (386)
Q Consensus 180 ~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~ 258 (386)
.-.. .+..+|.|.+++..|.|.|.|.++|..+. ......+.|+.+|.+...+....+..|..++|.|.+.|+|.|.+.
T Consensus 270 ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~-l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~Pavf 348 (1281)
T KOG4222|consen 270 RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGG-LEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVF 348 (1281)
T ss_pred ceeeeeccccccccccCCCcccceeeeccccccc-cccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceE
Confidence 4333 34478999999999999999999999987 667889999999999988888889999999999999999999999
Q ss_pred EEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC---CCCC----C
Q psy8823 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP---VCPP----Q 331 (386)
Q Consensus 259 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p---~~~~----~ 331 (386)
|.+.+....+......... ........+.|+|.+++..|.|.|.|...+..|+...-..+.+...- .+++ .
T Consensus 349 W~keg~q~llf~~~p~~~~--~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g 426 (1281)
T KOG4222|consen 349 WLKEGSQDLLFSASPPSSN--GRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQG 426 (1281)
T ss_pred EeccCcceecccCCCCCcC--ccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeec
Confidence 9998877444321111100 01111235589999999999999999999888876544333333211 1122 2
Q ss_pred CCCceeecCcceeeeEEecCCC---CCcccccceeeecccce-eeeeeeeecccc
Q psy8823 332 TQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY-QCVLPLVDRQDR 382 (386)
Q Consensus 332 ~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~-~~~i~~v~~~d~ 382 (386)
........++...+.|.+.+.| ++|.+++-.+....... ++.+-..+..|.
T Consensus 427 ~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl 481 (1281)
T KOG4222|consen 427 PANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDL 481 (1281)
T ss_pred ccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeee
Confidence 2334455678899999999998 79999999877665432 444444444443
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=203.40 Aligned_cols=238 Identities=18% Similarity=0.264 Sum_probs=197.0
Q ss_pred CCceEEEeCCccEEEEEEeee--eCCCeEEEEEcCeeeCCCCc-----------------eEEeeeEEEECCCCCCCCeE
Q psy8823 141 STRSLVVSEGQPVQLECFAGG--HPTPRISWRRENNAILPTGG-----------------SIYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~-----------------~~~~~~~l~i~~~~~~d~g~ 201 (386)
++..+....|.+++|+|.+.+ ..+..+.|.+++........ .......|.+.+++..|+|.
T Consensus 509 qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~gr 588 (873)
T KOG4194|consen 509 QPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGR 588 (873)
T ss_pred CchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCce
Confidence 455566678999999999965 44668999998763321110 00113468999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeee-eecCceeEEeeee
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQV-LTNNQHYSISHFA 280 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~ 280 (386)
|+|+++|..|...+..+.+.|...|.+...|.......|+.+.|.|.+.|.|.|.+.|.|+|.... .....+..+.
T Consensus 589 YQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm--- 665 (873)
T KOG4194|consen 589 YQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM--- 665 (873)
T ss_pred EEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec---
Confidence 999999999998889999999999999999999999999999999999999999999999987611 1111222211
Q ss_pred ecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC----CCc
Q psy8823 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP----TSW 356 (386)
Q Consensus 281 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p----~~W 356 (386)
..+..+.|.++..+|.|.|+|.|.|..|..++.+.|.|-+.|.......+..+..|+.+.+.|.+.+.| ..|
T Consensus 666 ----pedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W 741 (873)
T KOG4194|consen 666 ----PEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEW 741 (873)
T ss_pred ----CCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccc
Confidence 135668899999999999999999999999999999999998877778888999999999999998887 589
Q ss_pred ccccceeeecccce------eeeeeeeecccccCC
Q psy8823 357 EPQRKQLNCSSLLY------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 357 ~~~~~~l~~~~~~~------~~~i~~v~~~d~~~~ 385 (386)
.|+.+.+.-..|+. -+++..+..+|+++|
T Consensus 742 ~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~y 776 (873)
T KOG4194|consen 742 FKEDKPILITERHTFPDGDQLLVVKENLVEDAGIY 776 (873)
T ss_pred cCCCCceEEeecccCCCCCeEEEEEehhhhhcceE
Confidence 99999999988775 589999999999987
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=186.27 Aligned_cols=226 Identities=18% Similarity=0.190 Sum_probs=155.6
Q ss_pred EEeCCccEEEEEEe-----eeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 146 VVSEGQPVQLECFA-----GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 146 ~~~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
.+.+|+.+.|.|.+ .|.|.+.++|+|++..... ......+..|.|.++..+|+|.|+|.+.|..+. ....+.|
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~L 114 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-IIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLNL 114 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccce-EEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEEE
Confidence 35579999999986 5788889999998753110 011112445889999999999999999998765 4455666
Q ss_pred EEEec--ceEeeCCCcccccCCCcEEEEEE-----EEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 221 EVEFA--PVITVPKPRLGQALQYDMDLECH-----VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 221 ~v~~~--p~~~~~~~~~~~~~g~~~~l~C~-----~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
.|... |.+........+.+|..+.|.|. ..+.|++.+.|+++.. + ...++.. ..++.|.|.
T Consensus 115 ~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~---~-~~~r~~~--------~~~~~L~i~ 182 (326)
T PHA02785 115 TIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR---L-RNKRLKQ--------RTPGIITIE 182 (326)
T ss_pred EEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc---c-CCcceEe--------cCCCeEEEe
Confidence 66443 22222222334568899999997 2467888999987542 2 1122211 124689999
Q ss_pred ecccCCCeEEEEEEEcCCCceee----EEEEEEEecCCCC--CCCCCceeecCcceeeeEEecCCC------CCcccccc
Q psy8823 294 TIEKRQYGSYICRAANKLGTSEK----TVELFESIIPVCP--PQTQPSELLPLRNVNMAVIFAEQP------TSWEPQRK 361 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~~~----~~~l~v~~~p~~~--~~~~~~~~~~~~~~~~~c~~~~~p------~~W~~~~~ 361 (386)
+++.+|+|.|+|.|.|..|.... .+.|.|.....+| ..+....+..|+.++|.|.+.+.| +.|++||+
T Consensus 183 ~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~ 262 (326)
T PHA02785 183 DVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGM 262 (326)
T ss_pred ecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCE
Confidence 99999999999999999887643 3345554322222 123445566799999999998766 57999998
Q ss_pred eeeecc-----c----------------ceeeeeeeeecccccCC
Q psy8823 362 QLNCSS-----L----------------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 362 ~l~~~~-----~----------------~~~~~i~~v~~~d~~~~ 385 (386)
.+.... + ...|.|.+|+.+|++.|
T Consensus 263 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y 307 (326)
T PHA02785 263 YYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTF 307 (326)
T ss_pred ECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeee
Confidence 774321 1 12699999999999765
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=156.06 Aligned_cols=165 Identities=19% Similarity=0.342 Sum_probs=111.6
Q ss_pred ccceeeecCCcEEEEEEEeeC-----------CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA-----------QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~-----------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
..+..+.+|++|.|.|.+.+. ..+.|.|+|++... .....+....... +.. .+....+.+|.
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~----~v~~~~~~~~~~~--i~~-~~~~~r~~~L~ 101 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLA----FVRDSGARTKIKK--ITH-NEIGDRSENLW 101 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEE----EEEcCCCcccccc--ccc-cceecCCCeEE
Confidence 345668999999999997653 34579999975321 0000000000000 000 00011244899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEee-----eeCCCeEEEEEcCe
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAG-----GHPTPRISWRRENN 174 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-----~~~~~~v~W~~~~~ 174 (386)
|.+++.+|+|.|+|.+.|.. ......+.|.|..++ ....+.+|+.++|.|.+. +.|.+.++|+|++.
T Consensus 102 I~~v~~~DsG~Y~C~a~N~~-~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~ 173 (227)
T PHA02826 102 IGNVINIDEGIYICTISSGN-ICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGN 173 (227)
T ss_pred ECCCChHHCEEEEEEEEECC-cceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCE
Confidence 99999999999999999854 334666777774322 234567899999999885 34578999999999
Q ss_pred eeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 175 AILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 175 ~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
.+........ .+..|.|.+++.+|+|.|+|.+....
T Consensus 174 ~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 174 IVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred ECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 8865544332 34589999999999999999998753
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=149.81 Aligned_cols=156 Identities=15% Similarity=0.269 Sum_probs=113.5
Q ss_pred ceEEEeCCccEEEEEEeeeeC-----------CCeEEEEEcCeee--CCC-----------CceEEeeeEEEECCCCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP-----------TPRISWRRENNAI--LPT-----------GGSIYRGSILKIPQITKED 198 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~-----------~~~v~W~~~~~~~--~~~-----------~~~~~~~~~l~i~~~~~~d 198 (386)
..+.+.+|+++.|.|.+.+.+ .+.+.|+|++... ... .....++..|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999986643 3479999987542 100 0011235689999999999
Q ss_pred CeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEE-----ecCCCeeEEEeCCeeeeeecCce
Q psy8823 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-----AYPPPAIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 199 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----g~p~~~~~W~~~~~~~~~~~~~~ 273 (386)
+|.|+|++.|..+. ....+.|.|..++ ....+.+|+.+.|.|.+. +.|.|+++|++++.. +....+
T Consensus 110 sG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~--l~~~~r 180 (227)
T PHA02826 110 EGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI--VLYTDR 180 (227)
T ss_pred CEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE--CCCCCC
Confidence 99999999997765 4556666664322 234567899999999985 345789999999988 444444
Q ss_pred eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 274 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
+.... ....|.|.+++.+|+|.|+|.|+...+..
T Consensus 181 ~~~~~-------~~~~L~I~~V~~~DsG~YtC~a~~~~~g~ 214 (227)
T PHA02826 181 IQLRN-------NNSTLVIKSATHDDSGIYTCNLRFNKNSN 214 (227)
T ss_pred EEEeC-------CCCEEEECcCCHHhCEEEEEEEEEeECCE
Confidence 33221 34589999999999999999999875433
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=117.77 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=81.4
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+....+..|+.+.|.|.+.|.|++++.|++++.. +....++.+... ...+.|.|.++..+|+|.|+|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~--l~~~~~~~~~~~-----~~~s~L~I~~~~~~D~G~Ytc 73 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQ--IQEGEGIKIENT-----ENSSKLTITEGQQEHCGCYTL 73 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEE--ecCCCcEEEEec-----CCeeEEEECCCChhhCEEEEE
Confidence 4455566777889999999999999999999999999988 555544443321 135789999999999999999
Q ss_pred EEEcCCCceeeEEEEEEEecCCCC
Q psy8823 306 RAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|.|..|..++++.|.|.+.|.+|
T Consensus 74 ~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 74 EVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EEEcCCCceeEEEEEEEecCCCCC
Confidence 999999999999999999998765
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=108.41 Aligned_cols=87 Identities=21% Similarity=0.373 Sum_probs=72.3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.|+|.|.++|++++.. +....++.. .+..|.|.++..+|+|.|+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~--~~~~~~~~~---------~~~~L~I~~v~~~D~G~Y~ 69 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEP--MPATAEISM---------SGAVLKIFNIQPEDEGTYE 69 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcC--CCCCCEEec---------CCCEEEECcCChhhCEEEE
Confidence 46666677778888999999999999999999999999876 433322211 2457999999999999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v 322 (386)
|.|.|..|..+.++.|.|
T Consensus 70 C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 70 CEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEEEcCCCceEEEEEEEE
Confidence 999999999999998876
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-16 Score=105.42 Aligned_cols=87 Identities=20% Similarity=0.361 Sum_probs=69.6
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
|+.+.|.|.+.|.|++.+.|++++.. +.. ..++.+..... .....+.|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~--i~~~~~r~~~~~~~~-~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~ 77 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRI--INPEMSRYLVSTKEV-GDEVISTLQILPTVREDSGFFSCHAINSYGEDRGII 77 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEE--CCCCCCcEEEEEecC-CCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEE
Confidence 68899999999999999999999976 432 23443332211 223457899999999999999999999999999999
Q ss_pred EEEEEecCCCC
Q psy8823 319 ELFESIIPVCP 329 (386)
Q Consensus 319 ~l~v~~~p~~~ 329 (386)
.|.|...|.+|
T Consensus 78 ~L~V~~~P~~P 88 (88)
T cd05735 78 QLTVQEPPDPP 88 (88)
T ss_pred EEEEeCCCCCC
Confidence 99999887654
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=106.28 Aligned_cols=89 Identities=22% Similarity=0.362 Sum_probs=69.2
Q ss_pred CcccccCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 233 PRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
....+.+|+++.|.|.+.| .|+|.+.|+|+|.. +...................+.|.|..+..+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~--i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRT--LTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCee--CCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 3456778999999999999 88889999999988 54333322211111112246889999999999999999999999
Q ss_pred CceeeEEEEEEE
Q psy8823 312 GTSEKTVELFES 323 (386)
Q Consensus 312 g~~~~~~~l~v~ 323 (386)
|..+.++.|.|.
T Consensus 89 G~~~~t~~L~V~ 100 (101)
T cd04975 89 ASKSLTFELYVN 100 (101)
T ss_pred ccEEEEEEEEEE
Confidence 999999998875
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-16 Score=101.30 Aligned_cols=74 Identities=26% Similarity=0.541 Sum_probs=61.7
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
+|+.+.|.|.+.|+|.|.+.|++++.. +....+.... ..+.|.|.++..+|+|.|+|.|.|..|+.+.++
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~--~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 70 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQ--LSVDRRHLVL--------SSGTLRISRVALHDQGQYECQAVNIVGSQRTVA 70 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEE--CCCCCCeEEc--------cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEE
Confidence 588999999999999999999999987 4333222221 356899999999999999999999999999998
Q ss_pred EEEE
Q psy8823 319 ELFE 322 (386)
Q Consensus 319 ~l~v 322 (386)
.|.|
T Consensus 71 ~L~V 74 (74)
T cd05745 71 QLTV 74 (74)
T ss_pred EEeC
Confidence 8864
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=99.77 Aligned_cols=73 Identities=33% Similarity=0.479 Sum_probs=62.1
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++.. +....++.+. .++.|.|.+++.+|+|.|+|.|.|..|+...+..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~--l~~~~r~~~~--------~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 70 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTEL--LVNNSRISIW--------DDGSLEILNITKLDEGSYTCFAENNRGKANSTGV 70 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEe--cccCCCEEEc--------CCCEEEECcCChhHCEEEEEEEECCCCceeEEEE
Confidence 67899999999999999999999876 4444444432 2467999999999999999999999999999998
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 71 l~~ 73 (73)
T cd05852 71 LSV 73 (73)
T ss_pred EEC
Confidence 864
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=104.52 Aligned_cols=96 Identities=20% Similarity=0.398 Sum_probs=68.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+.......|+.++|.|.+.|.|.|.++|++++.. +...................+.|.|.++..+|+|.|+
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~--~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRN--ISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCcc--ccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence 45555555555555689999999999999999999998765 3221110000000011123468999999999999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v 322 (386)
|.|.|..|....++.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999999988865
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=102.69 Aligned_cols=89 Identities=19% Similarity=0.364 Sum_probs=73.1
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+..|+.+.|.|.+.|+|.|.+.|++++.. +....++.+.. ....+.|.|.++..+|+|.|+
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~--l~~~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~ 75 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQI--IVSSQRHQITS-----TEYKSTFEISKVQMSDEGNYT 75 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEE--CCCCCcEEEEE-----cCCeeEEEECCCCcccCEeEE
Confidence 56666677788899999999999999999999999999877 44444443321 113578999999999999999
Q ss_pred EEEEcCCCceeeEEEE
Q psy8823 305 CRAANKLGTSEKTVEL 320 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l 320 (386)
|.|.|..|..+.++.|
T Consensus 76 C~a~N~~G~~~~~~~l 91 (92)
T cd05747 76 VVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEcCCCCEeEEEEe
Confidence 9999999999888876
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-15 Score=105.86 Aligned_cols=101 Identities=22% Similarity=0.398 Sum_probs=73.7
Q ss_pred EecceEeeCCCc--c--cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecc-
Q psy8823 223 EFAPVITVPKPR--L--GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIE- 296 (386)
Q Consensus 223 ~~~p~~~~~~~~--~--~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~- 296 (386)
.++|.+...+.. . ....|..++|.|.+.|.|.+.+.|++++.. +.. ..++....... .....+.|.|.++.
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~--l~~~~~r~~~~~~~~-~~~~~s~L~I~~v~~ 78 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVP--LDLGNPRYEETTEHT-GTVHTSILTIINVSA 78 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEE--CCCCCCeEEEEeecc-CccceeEEEECcCCc
Confidence 456666554431 1 123568999999999999999999999987 432 22333322221 22235789999997
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.+|.|.|+|.|.|..|....++.|.+...|
T Consensus 79 ~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 79 ALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred cCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 599999999999999999999999997666
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-15 Score=100.24 Aligned_cols=82 Identities=13% Similarity=0.297 Sum_probs=66.4
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.+.+..|+.+.|.|.+.|.|.|.+.|++++.. +... .++.+... ...+.|.|.++..+|+|.|+|.|.|..|
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~--i~~~~~r~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G 76 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKA--FTETEGRVRVESY-----KDLSSFVIEGAEREDEGVYTITVTNPVG 76 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEE--CccCCCeEEEEEc-----CCeEEEEECCCccCcCEEEEEEEEeCCC
Confidence 34567899999999999999999999999987 4322 23333211 1357899999999999999999999999
Q ss_pred ceeeEEEEEE
Q psy8823 313 TSEKTVELFE 322 (386)
Q Consensus 313 ~~~~~~~l~v 322 (386)
..+.++.|.|
T Consensus 77 ~~~~~~~l~V 86 (86)
T cd05894 77 EDHASLFVKV 86 (86)
T ss_pred cEEEEEEEEC
Confidence 9999988864
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=133.45 Aligned_cols=303 Identities=20% Similarity=0.286 Sum_probs=190.0
Q ss_pred eeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
.-+..|++|.|+|.+.++| ...+.|++.+.... .++.... +..|.......+.-+.|.
T Consensus 17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----------------~~~~~~~-----~~~~~~~~~~~~~~~~~~ 75 (741)
T KOG3515|consen 17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----------------GRYATIA-----DPTLVTTGDVRDTVAELN 75 (741)
T ss_pred hhhccCCcceeeeecCCCCCCcceEEEecCcccc----------------ccccccc-----CCceeeecchhhhhhhhh
Confidence 3688999999999998654 56799999876541 2222211 126777777788888999
Q ss_pred EEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe--eeeCCCeEEEEEcCeeeCCCCc---------
Q psy8823 113 CQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA--GGHPTPRISWRRENNAILPTGG--------- 181 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~--~~~~~~~v~W~~~~~~~~~~~~--------- 181 (386)
|++.+..+........+.+..+|....... ......+..+.+.|.+ .+.|.++++|..++........
T Consensus 76 c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~-e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a 154 (741)
T KOG3515|consen 76 CRAFNSVGMPSRCPMILDVDYPPACLPELG-EIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGA 154 (741)
T ss_pred hhhcccccCceecceeeccccCcccccccc-chhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccc
Confidence 999887666666777888888875543322 2234567889999965 4667789999998765433221
Q ss_pred ---eEEeeeEEEECCCCCCCCeEEEEEEecCCCC--ceeeeEEEEEEecce---EeeCCCcccccCCCcEEEEEEEE-ec
Q psy8823 182 ---SIYRGSILKIPQITKEDRGTYYCVAENGVGK--GTRRNIAVEVEFAPV---ITVPKPRLGQALQYDMDLECHVE-AY 252 (386)
Q Consensus 182 ---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~--~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~l~C~~~-g~ 252 (386)
.......+.+...+.++.|.|+|.+.+.... ...+...+.+..+.. +..........+|+.+.|.|.+. |+
T Consensus 155 ~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~ 234 (741)
T KOG3515|consen 155 LGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGN 234 (741)
T ss_pred cCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCC
Confidence 1123456888888899999999999885332 233444555443332 22223335567899999999865 57
Q ss_pred CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCC
Q psy8823 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332 (386)
Q Consensus 253 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~ 332 (386)
|.+.++|+++...... ..... ... ........+.+..-..++.-...|.+.|. ..++..+.+...|...+..
T Consensus 235 P~~~~~w~~~s~~~~~--~sl~~--~~~-sg~~v~~~~~~~~~r~~~~~~~kc~a~n~---~~~~~~tav~~~~~~~~Is 306 (741)
T KOG3515|consen 235 PSQQQTWYKDSRPQSE--SSLLS--QEP-SGDTVSSTLVLRVGRQDLQAQLKCKASNL---LAASQITAVQVKPTAVPIS 306 (741)
T ss_pred cchhhhhccccccchh--hhccc--CCC-CCCcccccccccccccchhhhhhccccCc---cccceeeeccccccccccc
Confidence 8889999999877322 21110 000 11112334444444445555688999992 2233333344444433322
Q ss_pred -CCceeecCcceeeeEEec-CCC---CCcccccceeeec
Q psy8823 333 -QPSELLPLRNVNMAVIFA-EQP---TSWEPQRKQLNCS 366 (386)
Q Consensus 333 -~~~~~~~~~~~~~~c~~~-~~p---~~W~~~~~~l~~~ 366 (386)
.......++...+.|... +.| +.|+++.....-+
T Consensus 307 t~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~ 345 (741)
T KOG3515|consen 307 TSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGS 345 (741)
T ss_pred CcccccccccccccceeccCCCCccceeeeccCcccccc
Confidence 223377888899999773 333 7899866654433
|
|
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.9e-15 Score=100.81 Aligned_cols=90 Identities=28% Similarity=0.537 Sum_probs=76.8
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +....++...... ....|.|.++..+|+|.|+|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~--l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 73 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRP--LTSSQRYQIESDG-----GSSSLTIKNVTREDAGTYTC 73 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEE--EESSSSEEEEEET-----TEEEEEESSESGGGSEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccc--eeeeeeeeeeccc-----ceeEEccCCCChhhCEEEEE
Confidence 4566667778889999999999999999999999999988 6666555544322 57889999999999999999
Q ss_pred EEEcCCCceeeEEEEEE
Q psy8823 306 RAANKLGTSEKTVELFE 322 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v 322 (386)
.|.|..|..+.++.|.|
T Consensus 74 ~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 74 VASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEEC
Confidence 99999999999998875
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-15 Score=100.11 Aligned_cols=86 Identities=22% Similarity=0.394 Sum_probs=69.6
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....... .....|.|.+++.+|+|.|+|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~--~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C 70 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGS--MPSSAEIS---------MSGAVLKIPNIQFEDEGTYEC 70 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCc--CCCccEEE---------EeCCEEEECCCCcccCEEEEE
Confidence 3344456667788999999999999999999999998876 32222211 146789999999999999999
Q ss_pred EEEcCCCceeeEEEEEE
Q psy8823 306 RAANKLGTSEKTVELFE 322 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v 322 (386)
.|.|..|....+..|.|
T Consensus 71 ~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 71 EAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEECCCcEEEEEEEEE
Confidence 99999999999988876
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-15 Score=101.05 Aligned_cols=85 Identities=20% Similarity=0.319 Sum_probs=67.9
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
+....+.+|+++.|.|.+.|.|.|.+.|++++.. +....++.+.... .....|.|.++..+|+|.|+|.|.|..
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~--l~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 81 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQA--LALSDHYNVKVEQ----GKYASLTIKGVSSEDSGKYGIVVKNKY 81 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEE--CccCCCEEEEEcC----CCEEEEEEccCChhhCEEEEEEEEECC
Confidence 4456678899999999999999999999999987 4444443332110 124579999999999999999999999
Q ss_pred CceeeEEEEEE
Q psy8823 312 GTSEKTVELFE 322 (386)
Q Consensus 312 g~~~~~~~l~v 322 (386)
|.....+.|.|
T Consensus 82 G~~~~~~~v~v 92 (92)
T cd05737 82 GGETVDVTVSV 92 (92)
T ss_pred CcceEEEEEeC
Confidence 99999888764
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-15 Score=96.17 Aligned_cols=74 Identities=24% Similarity=0.452 Sum_probs=58.7
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
+.|.|.+.|.|.|.+.|++++.. +.. ..++.+.... ....+|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~--i~~~~~r~~~~~~~----~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEM--VQYNTDRISLYQDN----SGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEE--CcCCCCeEEEEEcC----CCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence 47999999999999999999987 432 2344332111 1234799999999999999999999999999998886
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 75 V 75 (75)
T cd05892 75 V 75 (75)
T ss_pred C
Confidence 5
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=101.40 Aligned_cols=95 Identities=24% Similarity=0.376 Sum_probs=73.7
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.|...+....+.+|+++.|.|.+.|.|.+.+.|+|++..+. .+.++..... ...+.|.|.++.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~--------------~~~~~~~~~~--~~~s~L~I~~~~ 64 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQ--------------EGEGIKIENT--ENSSKLTITEGQ 64 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEec--------------CCCcEEEEec--CCeeEEEECCCC
Confidence 456777888889999999999999999999999999886542 1122222221 234589999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+|+|.|+|.+.|..+.. .+.+.|.|..+|.
T Consensus 65 ~~D~G~Ytc~a~N~~G~~-~~~~~l~V~~~P~ 95 (98)
T cd05762 65 QEHCGCYTLEVENKLGSR-QAQVNLTVVDKPD 95 (98)
T ss_pred hhhCEEEEEEEEcCCCce-eEEEEEEEecCCC
Confidence 999999999999876554 6688898887764
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=93.92 Aligned_cols=66 Identities=23% Similarity=0.447 Sum_probs=55.8
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|+|+|.+.|+|+|.. +... .....|.|.++..+|+|.|+|.|+|..|..++++.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~--l~~~-------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKL--ISGK-------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEE--Cccc-------------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 47899999999999999999987 4311 13568999999999999999999999998888777766
Q ss_pred E
Q psy8823 323 S 323 (386)
Q Consensus 323 ~ 323 (386)
.
T Consensus 66 ~ 66 (67)
T cd05863 66 I 66 (67)
T ss_pred E
Confidence 3
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-15 Score=95.58 Aligned_cols=71 Identities=25% Similarity=0.575 Sum_probs=58.3
Q ss_pred cEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 242 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
++.|.|.+.|.|.|.++|++++.. +....++... ....|.|.++..+|+|.|+|.|.|..|+.++++.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~--~~~~~~~~~~--------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDM--VIPSDYFKIV--------KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeE--CCCCCCEEEE--------ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence 478999999999999999999987 4443333322 234588889999999999999999999999999886
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 71 V 71 (71)
T cd05723 71 I 71 (71)
T ss_pred C
Confidence 4
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-15 Score=99.58 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=68.0
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.+....+..|+++.|.|.+.|.|.|.+.|++++.. +....++.. ....|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~--~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQP--LASENRIEV---------EAGDLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEE--CCCCCeEEE---------eCCEEEEeeCCHHHCEEEEEEEECC
Confidence 45567788999999999999999999999999987 444444332 2457999999999999999999999
Q ss_pred CCceeeEEEEEE
Q psy8823 311 LGTSEKTVELFE 322 (386)
Q Consensus 311 ~g~~~~~~~l~v 322 (386)
.|...+++.|.|
T Consensus 74 ~G~~~~~~~l~V 85 (85)
T cd05728 74 HGTIYASAELAV 85 (85)
T ss_pred CCeEEEEEEEEC
Confidence 999999888764
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=99.46 Aligned_cols=84 Identities=14% Similarity=0.243 Sum_probs=66.6
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +......... .......|.|.++..+|.|.|+|.|.|..
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~--~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~ 79 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLI--VIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENPV 79 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEE--ccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECCC
Confidence 3445578999999999999999999999999987 4332221111 11235689999999999999999999999
Q ss_pred CceeeEEEEEE
Q psy8823 312 GTSEKTVELFE 322 (386)
Q Consensus 312 g~~~~~~~l~v 322 (386)
|....++.|.|
T Consensus 80 G~~~~~~~L~v 90 (90)
T cd04972 80 GQANVSVQVTV 90 (90)
T ss_pred CceeEEEEEeC
Confidence 99999988764
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=101.07 Aligned_cols=82 Identities=22% Similarity=0.509 Sum_probs=66.7
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...+..|+.+.|.|.+.|.|.|.+.|++++.. +... .++... ...+.|.|.+++.+|.|.|+|.|.|..|
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~--~~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEP--IESGEEKYSFN-------EDGSEMTILDVDKLDEAEYTCIAENKAG 82 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEE--CcCCCCEEEEe-------CCCCEEEECCCChhhCEEEEEEEEcCCC
Confidence 34577899999999999999999999999987 4332 222211 1245799999999999999999999999
Q ss_pred ceeeEEEEEEEe
Q psy8823 313 TSEKTVELFESI 324 (386)
Q Consensus 313 ~~~~~~~l~v~~ 324 (386)
..+.++.|.|..
T Consensus 83 ~~~~~~~L~V~~ 94 (95)
T cd05730 83 EQEAEIHLKVFA 94 (95)
T ss_pred eEEEEEEEEEEe
Confidence 999999998864
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=106.72 Aligned_cols=124 Identities=19% Similarity=0.331 Sum_probs=89.7
Q ss_pred EEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCee
Q psy8823 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQ 265 (386)
Q Consensus 188 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~ 265 (386)
+|.|.+++.+|+|.|.|.+.+..+. ....+.|.|..+|.+...+.......|+.+.|.|.+.|. |. +.+.|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 5899999999999999999987666 567889999999988776665555578899999999986 44 38999999854
Q ss_pred eee----ecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 266 QVL----TNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 266 ~~~----~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
... ..... .......+..+...+.|.+.....++.+.|+|.+.|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 111 01111 011122233334567788877777778899999988754
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=101.50 Aligned_cols=88 Identities=23% Similarity=0.294 Sum_probs=67.9
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee-cCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT-ADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...+..|+.+.|.|.+.|+|+|.+.|+|++.+ +............+ ......+.|.|.++..+|+|.|+|.|.|..|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~--l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRT--LIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEE--CcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 34566789999999999999999999999988 54433221111100 1112357899999999999999999999999
Q ss_pred ceeeEEEEEEE
Q psy8823 313 TSEKTVELFES 323 (386)
Q Consensus 313 ~~~~~~~l~v~ 323 (386)
..+.++.|.|.
T Consensus 90 ~~~~t~~l~V~ 100 (101)
T cd05859 90 VKSYTFALQIQ 100 (101)
T ss_pred eEEEEEEEEEE
Confidence 99999998874
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=101.79 Aligned_cols=95 Identities=18% Similarity=0.330 Sum_probs=68.5
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+. ......+.+|+.+.|.|.+.|.|.|.+.|++++.. +...................+.|.|.+++.+|+|.|+
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 78 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRN--FSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYD 78 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcc--cCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeE
Confidence 34443 33456778899999999999999999999998855 3221110000011111223578999999999999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v 322 (386)
|.|.|..|..+.++.|.|
T Consensus 79 C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 79 CEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEeCCCCcEEEEEEeC
Confidence 999999999999888764
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-14 Score=98.15 Aligned_cols=80 Identities=41% Similarity=0.622 Sum_probs=65.9
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+.+|+.+.|.|.+.|.|.|.++|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|. ....+.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~ 86 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARVY 86 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEEE
Confidence 34567889999999999999999999999998876554433345668999999999999999999999997 55556665
Q ss_pred E
Q psy8823 222 V 222 (386)
Q Consensus 222 v 222 (386)
|
T Consensus 87 V 87 (88)
T cd05851 87 V 87 (88)
T ss_pred E
Confidence 5
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=95.84 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=60.2
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+++.|.|.+.|.|.|+++|++++..+.......... .....|.|.+++.+|+|.|+|.|.|..|...+++.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~--------~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK--------VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAF 72 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE--------ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence 6789999999999999999999998732221111111 12457899999999999999999999999999999
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 73 l~v 75 (76)
T cd05868 73 VNV 75 (76)
T ss_pred EEe
Confidence 876
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=94.85 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=57.6
Q ss_pred EEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 244 ~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
.|.|.+.|+|.|+++|++++.. +...................+.|.|.++..+|+|.|+|.|+|..|+..+++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~--l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAI--LNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEE--CCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999999999999999998 544433221111111112357899999999999999999999999998888763
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=95.74 Aligned_cols=74 Identities=19% Similarity=0.361 Sum_probs=60.3
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
|+++.|.|.+.|.|.|.++|++++..+...... ++. ...+.|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~---------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 71 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH---------VSSGALILTDVQPSDTAVYQCEARNRHGNLLANA 71 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE---------eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEE
Confidence 678999999999999999999999873221111 111 1356799999999999999999999999999998
Q ss_pred EEEE
Q psy8823 319 ELFE 322 (386)
Q Consensus 319 ~l~v 322 (386)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 8876
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=95.01 Aligned_cols=74 Identities=20% Similarity=0.372 Sum_probs=60.9
Q ss_pred cEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 242 ~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
.+.|.|.+.|.|.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~--l~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKP--LKLSGRVQIETT-----ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEE--cCCCCeEEEEEC-----CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence 368999999999999999999988 544444443221 1367899999999999999999999999999998886
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 74 V 74 (74)
T cd05748 74 V 74 (74)
T ss_pred C
Confidence 4
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=95.75 Aligned_cols=73 Identities=32% Similarity=0.515 Sum_probs=61.6
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++.. +....++... ....|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~--~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTEL--LTNSSRICIW--------PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGS 70 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEE--cccCCCEEEC--------CCCeEEEccCChhHCEEEEEEEECCCCceEEEEE
Confidence 67899999999999999999999987 4444444321 2457999999999999999999999999999988
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 71 l~V 73 (73)
T cd04969 71 LSV 73 (73)
T ss_pred EEC
Confidence 865
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=101.37 Aligned_cols=91 Identities=19% Similarity=0.388 Sum_probs=67.0
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-----CceeEEeeeeecCceeeeEEEEeecccCCC
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-----NQHYSISHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
|.+.. +....+.+|+.++|.|.+.|.|.|.+.|+++.....+.. ..++... .......|.|.+++.+|+
T Consensus 3 p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~-----~~~~~~~L~I~~v~~~D~ 76 (98)
T cd05870 3 PHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVK-----GQHGESSLHIKDVKLSDS 76 (98)
T ss_pred CEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEe-----ecCCeeEEEEeeCCcCCC
Confidence 44433 456778899999999999999999999999532211221 1222221 111346899999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEE
Q psy8823 301 GSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|.|+|.|.|..|....++.|.|
T Consensus 77 G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 77 GRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEEeccCCcceeEEEEeC
Confidence 9999999999999999888764
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=97.82 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=65.2
Q ss_pred CCCcccccCCCcEEEEEEEEecCC-CeeEEEe-CCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPP-PAIVWIK-EDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
.+....+..|+++.|.|.+.|.|. |.+.|++ ++.. +.. ..++.... . ....++|.|.+++.+|+|.|+|.|
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~--l~~~~~r~~v~~--~--~~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEK--LTPNQQRISVVR--N--DDYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcC--ccccCCeEEEEe--C--CCCceEEEEeccChhhCEEEEEEE
Confidence 344556788999999999999995 6999998 5654 322 22332211 1 112578999999999999999999
Q ss_pred EcCC-CceeeEEEEEE
Q psy8823 308 ANKL-GTSEKTVELFE 322 (386)
Q Consensus 308 ~n~~-g~~~~~~~l~v 322 (386)
.|.. |..++++.|.|
T Consensus 80 ~N~~~g~~~~s~~l~v 95 (96)
T cd05865 80 SNEDEGESEATVNVKI 95 (96)
T ss_pred EcCCCCcEEEEEEEEE
Confidence 9996 89999998876
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=93.70 Aligned_cols=74 Identities=28% Similarity=0.403 Sum_probs=58.2
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
+.|.|.+.|.|.|.+.|++++.. +.. ..++..... ......|.|.++..+|+|.|+|.|.|..|+.+.++.|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~--l~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENES--LTHNTDRVSMHQD----NCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEE--CCCCCCeEEEEEc----CCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence 57999999999999999999987 432 233333211 11234799999999999999999999999999998886
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 75 V 75 (75)
T cd05893 75 V 75 (75)
T ss_pred C
Confidence 4
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=128.97 Aligned_cols=220 Identities=15% Similarity=0.222 Sum_probs=159.5
Q ss_pred EEeCCccEEEEEEeeeeCC-CeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 146 VVSEGQPVQLECFAGGHPT-PRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
.+..|+.|.|.|.+.+.|+ ..+.|++.++... ..........|......++..+.|.|.+.|..+........+.+.+
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~ 96 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY 96 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccc-cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence 6889999999999977654 5799999988776 3333345677888888888889999999999888778888999999
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEE--ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCc-eeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVE--AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE-FTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~--g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G 301 (386)
+|.............+..+.+.|.+. +.|.+.++|..++..................... ...+.+.+...+.++.|
T Consensus 97 ~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g 176 (741)
T KOG3515|consen 97 PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNG 176 (741)
T ss_pred CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCc
Confidence 98877666667777888999999654 5666699999998874433322222221111111 34567888888999999
Q ss_pred EEEEEEEcC---CCceeeEEEEEEEecCCCCC---CCCCceeecCcceeeeEEe-cCCC---CCcccccceeeec
Q psy8823 302 SYICRAANK---LGTSEKTVELFESIIPVCPP---QTQPSELLPLRNVNMAVIF-AEQP---TSWEPQRKQLNCS 366 (386)
Q Consensus 302 ~Y~C~a~n~---~g~~~~~~~l~v~~~p~~~~---~~~~~~~~~~~~~~~~c~~-~~~p---~~W~~~~~~l~~~ 366 (386)
.|+|.|.|. .+.......+.+.......- ........++..++|.|.+ .++| ++|+++..+...+
T Consensus 177 ~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~ 251 (741)
T KOG3515|consen 177 NYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES 251 (741)
T ss_pred eeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhh
Confidence 999999994 45555555555543322211 1122556788899999976 5555 7999999988876
|
|
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=91.95 Aligned_cols=69 Identities=16% Similarity=0.397 Sum_probs=56.0
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|+|.|.+.|++++.. +...... .....|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~--l~~~~~~----------~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQL--IVLNHTF----------KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEE--CCCCCEE----------ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 36899999999999999999988 4433221 12457999999999999999999999998887766655
Q ss_pred E
Q psy8823 323 S 323 (386)
Q Consensus 323 ~ 323 (386)
.
T Consensus 69 ~ 69 (70)
T cd05864 69 V 69 (70)
T ss_pred E
Confidence 3
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=93.36 Aligned_cols=68 Identities=25% Similarity=0.553 Sum_probs=56.9
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
+.|.|.+.|.|.|.+.|++++.. +....++.+. ..+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~--~~~~~~~~~~--------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQ--VTESGKFHIS--------PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEE--CCCCCCEEEC--------CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999999999999877 4444444332 24679999999999999999999999999988876
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=92.39 Aligned_cols=70 Identities=23% Similarity=0.448 Sum_probs=57.8
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|+|.+.|++++.. +....++. .....|.|.++..+|+|.|+|.|.|..|..+.++.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~--l~~~~~~~---------~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKL--ISEKNRTK---------KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEE--CCCCCEEE---------cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 46899999999999999999987 54443322 13567999999999999999999999999888877766
Q ss_pred E
Q psy8823 323 S 323 (386)
Q Consensus 323 ~ 323 (386)
.
T Consensus 70 ~ 70 (71)
T cd04976 70 V 70 (71)
T ss_pred E
Confidence 3
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-14 Score=94.33 Aligned_cols=82 Identities=21% Similarity=0.369 Sum_probs=62.5
Q ss_pred CcEEEEEEEEecCCC--eeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 241 YDMDLECHVEAYPPP--AIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 241 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
+.++|.|.+.|.|.| .+.|++++..+.... ..++.... .....+.|.|.+++..|+|.|+|.|.|..|..+++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME----VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE----ecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 468999999999987 689999998732211 11221110 01135689999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy8823 318 VELFESIIP 326 (386)
Q Consensus 318 ~~l~v~~~p 326 (386)
+.|.|..+|
T Consensus 77 ~~L~V~~~P 85 (85)
T cd05854 77 ATLVVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999998654
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.8e-14 Score=95.66 Aligned_cols=91 Identities=16% Similarity=0.318 Sum_probs=66.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCC-CcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+.+.|....+.+|++++|.|.+.+.|. +.++|++ ++..+.. .+.++..... ....++|.|.+++
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-------------~~~r~~v~~~-~~~~~~L~I~~v~ 68 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-------------NQQRISVVRN-DDYSSTLTIYNAN 68 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-------------cCCeEEEEeC-CCCceEEEEeccC
Confidence 556677778999999999999999885 6999998 4533211 1112222211 1223589999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+|+|.|+|.|.|..++..++.+.|.|
T Consensus 69 ~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 69 IDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred hhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 999999999999987677777777766
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-14 Score=92.50 Aligned_cols=70 Identities=24% Similarity=0.474 Sum_probs=57.1
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|.|.+.|++++.. +..... .. ......|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~--~~~~~~-~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGP--LSPNRT-KK-------LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcC--CCCCce-eE-------EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46899999999999999999876 322211 11 113568999999999999999999999999999988876
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=101.73 Aligned_cols=113 Identities=25% Similarity=0.388 Sum_probs=82.5
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcCe
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRRENN 174 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~ 174 (386)
+|.|.+++.+|+|.|+|.+.+.. ......+.|.|..+|.+..... .....+|+.+.|.|.+.|. |. +.+.|++++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~-~~~~~~~~l~v~~~P~v~~~~~-~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPP-HQAQQIIQLSVSEPPRVRLSLE-KLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccC-cceeeEEEEEEecCCceEEeCC-CceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 79999999999999999998653 3457888999998887765433 3334478899999999886 43 4899999875
Q ss_pred eeCC----------------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 175 AILP----------------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 175 ~~~~----------------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.... .++.....+.|.+.....++.+.|+|.+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 4211 111222345677777766677799999988654
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-14 Score=93.02 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=57.8
Q ss_pred EEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee--cCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT--ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 244 ~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
.|.|.+.|+|.|+++|+++|.. +............. ......+.|.|.++..+|+|.|+|.|.|..|..++++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~--i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAV--LNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEE--CcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 3789999999999999999988 44433322211111 1223466899999999999999999999999999988764
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-14 Score=96.13 Aligned_cols=86 Identities=20% Similarity=0.345 Sum_probs=68.0
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++..... . .....|.|.+++.+|+|.|+|.|.|.
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~--~~~~~~~~~~~~-~---~~~~~L~I~~~~~~D~G~Y~C~a~N~ 80 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQD--IELSEHYSVKLE-Q---GKYASLTIKGVTSEDSGKYSINVKNK 80 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEE--CCCCCCEEEEEc-C---CCEEEEEECCCChhhCEEEEEEEEeC
Confidence 34566788999999999999999999999999887 433333332211 1 12357999999999999999999999
Q ss_pred CCceeeEEEEEE
Q psy8823 311 LGTSEKTVELFE 322 (386)
Q Consensus 311 ~g~~~~~~~l~v 322 (386)
.|..+.++.|.|
T Consensus 81 ~G~~~~~~~v~~ 92 (92)
T cd05891 81 YGGETVDVTVSV 92 (92)
T ss_pred CCceeeEEEEEC
Confidence 999999998864
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-14 Score=93.48 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=60.8
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++.. +........ .......|.|.+++.+|+|.|+|.|.|..|...+++.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~--~~~~~~~~~------~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVP--IEELPPDPR------RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAF 72 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEE--CCCCCCcce------EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEE
Confidence 67899999999999999999999987 332221100 0123578999999999999999999999999999998
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 73 l~V 75 (76)
T cd04978 73 VHV 75 (76)
T ss_pred EEE
Confidence 876
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-14 Score=93.10 Aligned_cols=76 Identities=20% Similarity=0.321 Sum_probs=60.4
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+++.|.|.+.|.|.|.+.|++++.. +....++.... ......|.|.++..+|.|.|+|.|.|..|.......
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~--~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGH--VPDSARVSITS-----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeE--CCCCCCEEEEE-----CCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 67899999999999999999999876 44433433221 113578999999999999999999999999877666
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
+.+
T Consensus 74 ~~~ 76 (78)
T cd05743 74 GIL 76 (78)
T ss_pred EEE
Confidence 554
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-14 Score=91.70 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=57.8
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|.|.+.|++++..+.. ...++.+... ......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~-~~~r~~~~~~----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY-NTDRISLYQD----NCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC-CCCcEEEEEc----CCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999987321 2233332111 112346999999999999999999999999999988764
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=95.83 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=66.1
Q ss_pred ceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCceE-E--------eeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGGSI-Y--------RGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~-~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.+.+|++++|.|.+.| .|+|.+.|+|+|..+....... . ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4567889999999999999 8899999999999886433322 1 1467999999999999999999999997
Q ss_pred ceeeeEEEEEE
Q psy8823 213 GTRRNIAVEVE 223 (386)
Q Consensus 213 ~~~~~~~l~v~ 223 (386)
.+..+.|.|+
T Consensus 91 -~~~t~~L~V~ 100 (101)
T cd04975 91 -KSLTFELYVN 100 (101)
T ss_pred -EEEEEEEEEE
Confidence 6677777764
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=93.92 Aligned_cols=80 Identities=40% Similarity=0.677 Sum_probs=66.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+.+|+.+.|.|.+.|.|.+.++|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|. ......|.
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 86 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGK-DTHQGRIY 86 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-EEEEEEEE
Confidence 45567889999999999999999999999988776554444445678999999999999999999999987 45555655
Q ss_pred E
Q psy8823 222 V 222 (386)
Q Consensus 222 v 222 (386)
|
T Consensus 87 V 87 (88)
T cd04968 87 V 87 (88)
T ss_pred E
Confidence 4
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=94.61 Aligned_cols=90 Identities=27% Similarity=0.458 Sum_probs=70.5
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+. .+.++...... ..++|.|.+++
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~--------------~~~~~~~~~~~--~~~~L~I~~v~ 64 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLT--------------SSQRYQIESDG--GSSSLTIKNVT 64 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEE--------------SSSSEEEEEET--TEEEEEESSES
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccccccee--------------eeeeeeeeccc--ceeEEccCCCC
Confidence 567888888999999999999999999999999999875542 23344433322 66799999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+|+|.|+|.+.+. .+..+..+.|.|
T Consensus 65 ~~D~G~Y~C~~~n~-~g~~~~~~~l~V 90 (90)
T PF07679_consen 65 REDAGTYTCVASNS-SGEATASVNLTV 90 (90)
T ss_dssp GGGSEEEEEEEEET-TEEEEEEEEEEE
T ss_pred hhhCEEEEEEEEEC-CCEEEEEEEEEC
Confidence 99999999999987 444466666654
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-14 Score=89.97 Aligned_cols=68 Identities=24% Similarity=0.467 Sum_probs=54.4
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++.. +.....+. .....|.|.++. |+|.|+|.|.|..|..+.++.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~--l~~~~~~~---------~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEE--LTKEDEMP---------VGRNVLELTNIY--ESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEE--CCCcccee---------cCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEE
Confidence 67899999999999999999999987 43332221 124468888874 789999999999999988877
Q ss_pred E
Q psy8823 320 L 320 (386)
Q Consensus 320 l 320 (386)
|
T Consensus 68 l 68 (69)
T cd05739 68 V 68 (69)
T ss_pred E
Confidence 6
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=93.64 Aligned_cols=84 Identities=18% Similarity=0.310 Sum_probs=63.3
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeC-CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKE-DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+....+.+|+.+.|.|.+.|.|. .+.|+++ +.. +....++.... ......|.|.++..+|+|.|+|.|.|
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~--~~~~~r~~~~~-----~g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEK--IVSSQRVVVQK-----EGVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeE--ecCCCCEEEEe-----CCCeeEEEEecCChHHCEEEEEEEEc
Confidence 445567889999999999999998 8999985 444 33334443321 11245899999999999999999999
Q ss_pred CCCce-eeEEEEEE
Q psy8823 310 KLGTS-EKTVELFE 322 (386)
Q Consensus 310 ~~g~~-~~~~~l~v 322 (386)
..|.. ++++.|.+
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 99986 56666654
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.6e-14 Score=93.25 Aligned_cols=82 Identities=13% Similarity=0.269 Sum_probs=62.7
Q ss_pred CcEEEEEEEEe--cCCCeeEEEeCCeeeeee-cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 241 YDMDLECHVEA--YPPPAIVWIKEDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 241 ~~~~l~C~~~g--~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
+++.|.|.+.+ .+++.+.|++|+..+... ...++.... .....+.|.|.+++..|+|+|+|.|.|..++..++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~----~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVG----GQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEec----cCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence 46899999976 446799999999984332 222332210 00135689999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy8823 318 VELFESIIP 326 (386)
Q Consensus 318 ~~l~v~~~p 326 (386)
+.|.|..+|
T Consensus 77 a~L~V~~pP 85 (85)
T cd05853 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEecCC
Confidence 999998765
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=96.34 Aligned_cols=94 Identities=22% Similarity=0.384 Sum_probs=69.7
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc-CCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK-RQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~ 302 (386)
+|.+. .+....+..|+.+.|.|.+.|.|.| .+.|++++..+......++.+...... ....+.|.|.++.. +|.|.
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCcccccccee
Confidence 34443 3445667899999999999999999 699999998733322345544432211 22356899999998 55899
Q ss_pred EEEEEEcCCCceeeEEEE
Q psy8823 303 YICRAANKLGTSEKTVEL 320 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l 320 (386)
|+|.|.|..|.++..+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999999888776
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.7e-14 Score=94.51 Aligned_cols=81 Identities=15% Similarity=0.338 Sum_probs=63.7
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
.+..|+.+.|.|.+.|.|.|.+.|++++.. +........... ......|.|.++..+|+|.|+|.|.|..|+.+
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~--l~~~~~~~~~~~----~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKE--FKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 78 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEE--CCCCCceeeeEE----eCCceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence 467899999999999999999999999987 433322211000 01345799999999999999999999999999
Q ss_pred eEEEEEE
Q psy8823 316 KTVELFE 322 (386)
Q Consensus 316 ~~~~l~v 322 (386)
.++.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05857 79 HTYHLDV 85 (85)
T ss_pred EEEEEEC
Confidence 9988864
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=93.21 Aligned_cols=82 Identities=16% Similarity=0.336 Sum_probs=62.5
Q ss_pred CcEEEEEEEEecCCC--eeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 241 YDMDLECHVEAYPPP--AIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 241 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
+++.|.|.+.|.|.| .+.|++++..+..... ..+.... .....+.|.|.+++..|+|.|+|.|.|..|..+++
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 76 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG----GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe----cccccceEEEccCCHHhCeeeEEEEecCCCcEEEE
Confidence 468999999999987 6799999987332211 1111110 01135789999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy8823 318 VELFESIIP 326 (386)
Q Consensus 318 ~~l~v~~~p 326 (386)
+.|.|..+|
T Consensus 77 ~~l~V~~pP 85 (85)
T cd04970 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999998755
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=93.52 Aligned_cols=89 Identities=19% Similarity=0.334 Sum_probs=66.4
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+.+.+..+.+|+++.|.|.+.|.|. .+.|++++.... ..+.++.... .....+|.|.+++.+
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~-------------~~~~r~~~~~--~g~~~~L~I~~v~~~ 66 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKI-------------VSSQRVVVQK--EGVRSRLTIYNANIE 66 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEe-------------cCCCCEEEEe--CCCeeEEEEecCChH
Confidence 456677888999999999999999887 899998543210 1122333322 123458999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|+|.|+|.+.|..+....+.+.|.+
T Consensus 67 D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 67 DAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred HCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 9999999999987776677777765
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=93.34 Aligned_cols=79 Identities=25% Similarity=0.477 Sum_probs=64.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-----eeeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..|. ...
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG-ETV 86 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCc-ceE
Confidence 4567789999999999999999999999999988765543222 1347999999999999999999999987 445
Q ss_pred eEEEE
Q psy8823 217 NIAVE 221 (386)
Q Consensus 217 ~~~l~ 221 (386)
.+.|.
T Consensus 87 ~~~v~ 91 (92)
T cd05737 87 DVTVS 91 (92)
T ss_pred EEEEe
Confidence 55544
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=94.41 Aligned_cols=80 Identities=24% Similarity=0.488 Sum_probs=63.5
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeee------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLT------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
|+.+.|.|.+.|.|.|.+.|++++....+. ...++... ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS--------QTGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC--------CCCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 678999999999999999999988653221 11222211 2457999999999999999999999999
Q ss_pred eeeEEEEEEEecCC
Q psy8823 314 SEKTVELFESIIPV 327 (386)
Q Consensus 314 ~~~~~~l~v~~~p~ 327 (386)
...++.|.|.....
T Consensus 73 ~~~~~~l~V~~~~~ 86 (90)
T cd05726 73 ILTKAYLEVTDVIA 86 (90)
T ss_pred eEEEEEEEEeeccc
Confidence 99999999987543
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=97.06 Aligned_cols=96 Identities=23% Similarity=0.317 Sum_probs=64.1
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEE--eecccCCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV--ITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i--~~~~~~d~G~ 302 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+................. ....+.+ ..+..+|+|.
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSG--SLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCC--cEEEEEeeccCCCcCcCEE
Confidence 46666677778888999999999999999999999999987322110000000000000 1112222 2346899999
Q ss_pred EEEEEEcCCCc-eeeEEEEEE
Q psy8823 303 YICRAANKLGT-SEKTVELFE 322 (386)
Q Consensus 303 Y~C~a~n~~g~-~~~~~~l~v 322 (386)
|+|.|.|..|. .+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999998 566777765
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=90.71 Aligned_cols=77 Identities=29% Similarity=0.503 Sum_probs=63.6
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc-eEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
.+.+.+|+.+.|.|.+.|.|.|.++|++++..+..... ... ....|.|.++..+|+|.|+|.+.|..|. .+..+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEEE
Confidence 56788999999999999999999999999998865432 222 2468999999999999999999999997 55555
Q ss_pred EEE
Q psy8823 219 AVE 221 (386)
Q Consensus 219 ~l~ 221 (386)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05894 83 FVK 85 (86)
T ss_pred EEE
Confidence 554
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=89.47 Aligned_cols=71 Identities=31% Similarity=0.549 Sum_probs=58.3
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
|+.+.|.|.+.|.|.|.++|+|++..+........ .+++|.|.+++.+|+|.|+|.+.|..|. ......|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGK-ANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCc-eeEEEEEE
Confidence 67899999999999999999999987765544333 4578999999999999999999999987 44444443
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=90.69 Aligned_cols=72 Identities=31% Similarity=0.558 Sum_probs=59.5
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+|+.+.|.|.+.|.|.|.++|+|++..+...... ......|.|.+++.+|+|.|+|.+.|..|. .+..+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEEe
Confidence 5899999999999999999999999887654332 234568999999999999999999999987 44555554
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=92.04 Aligned_cols=79 Identities=24% Similarity=0.460 Sum_probs=66.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+..|+.+.|.|.+.|.|.|.+.|++++..+.........+..|.|.++..+|+|.|+|.+.|..|. ....+.|.
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 84 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGT-IYASAELA 84 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEEE
Confidence 44567889999999999999999999999999988665555556778999999999999999999999987 44555544
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=93.36 Aligned_cols=69 Identities=22% Similarity=0.452 Sum_probs=53.3
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCceee
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~ 316 (386)
+|+.+.|.|.+.|.|.|.++|++++..+......++.. .++.|.|.++. .+|+|.|+|.|.|..|....
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~---------~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL---------IDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe---------eCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 47899999999999999999999998732212222211 24578888874 69999999999999998753
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=89.89 Aligned_cols=69 Identities=29% Similarity=0.602 Sum_probs=56.1
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|+|.+.|++++.. +.. .++... ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~--~~~-~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGE--LPK-GRAEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCcc--CCC-CcEEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999766 322 222221 3457999999999999999999999999999888764
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-13 Score=92.19 Aligned_cols=81 Identities=27% Similarity=0.445 Sum_probs=66.5
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
.+..+.+.+|++++|.|.+.|. .+.+.|++++..+....... ..+..|.|.+++++|+|.|+|.+.|..|...+..+.
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 3445678899999999999999 99999999998865433211 134689999999999999999999999987777777
Q ss_pred EEE
Q psy8823 220 VEV 222 (386)
Q Consensus 220 l~v 222 (386)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 776
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-13 Score=92.43 Aligned_cols=72 Identities=25% Similarity=0.479 Sum_probs=54.7
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCceee-E
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSEK-T 317 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~ 317 (386)
|+.++|.|.+.|+|.|+++|++++..+......++.+ ..+.|.|.++. .+|.|.|+|.|+|..|.... .
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~---------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 89 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL---------VAGNLVINNPQKARDAGSYQCLAINRCGTVVSRE 89 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE---------ECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEE
Confidence 5689999999999999999999998833222223322 24578888765 69999999999999997754 4
Q ss_pred EEE
Q psy8823 318 VEL 320 (386)
Q Consensus 318 ~~l 320 (386)
+.|
T Consensus 90 a~l 92 (94)
T cd05850 90 ANL 92 (94)
T ss_pred EEE
Confidence 443
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=90.07 Aligned_cols=72 Identities=24% Similarity=0.420 Sum_probs=55.9
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-eeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-EKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 321 (386)
++|.|.+.|.|.|.+.|++++..+......++... ..+.|.|.+++.+|+|.|+|.|.|..|.. +.++.|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--------RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--------CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 47999999999999999999887322233333221 24569999999999999999999999985 5677776
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 73 v 73 (74)
T cd05738 73 V 73 (74)
T ss_pred E
Confidence 6
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-13 Score=89.54 Aligned_cols=74 Identities=28% Similarity=0.550 Sum_probs=57.9
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|.|.|.+.|++++... +....+... ...+.|.|.++..+|.|.|+|.|.|..|..+.++.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~-~~~~~~~~~--------~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 71 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKL-ISNSSRTLV--------YDNGTLDILITTVKDTGSFTCIASNAAGEATATVE 71 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEE-ecCCCeEEE--------ecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEE
Confidence 678999999999999999999754331 333332221 13467999999999999999999999999988888
Q ss_pred EEE
Q psy8823 320 LFE 322 (386)
Q Consensus 320 l~v 322 (386)
|.|
T Consensus 72 l~v 74 (74)
T cd05764 72 LHI 74 (74)
T ss_pred EEC
Confidence 764
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-13 Score=88.68 Aligned_cols=72 Identities=29% Similarity=0.504 Sum_probs=59.2
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
|+.+.|.|.+.|.|.|.++|++++..+.... ........|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence 6789999999999999999999998775432 23334678999999999999999999999887 455566554
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=93.05 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=58.5
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCee--eeeec-Cce-eEEeee--eecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQ--QVLTN-NQH-YSISHF--ATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~--~~~~~-~~~-~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
|+.+.|.|.+.|.|.|.++|++++.. ..+.. ... ...... ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 67899999999999999999996421 00111 111 111111 0111123457999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
..+++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999999877
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=90.30 Aligned_cols=73 Identities=22% Similarity=0.447 Sum_probs=56.2
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeee-eecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQV-LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
+.|.|.+.|.|.|.++|++++.... .....++... .....|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM-------PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe-------cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 4689999999999999999986411 1111122111 1245799999999999999999999999999998887
Q ss_pred E
Q psy8823 322 E 322 (386)
Q Consensus 322 v 322 (386)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 6
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=92.40 Aligned_cols=78 Identities=21% Similarity=0.420 Sum_probs=62.1
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
....|+.+.|.|.+.|.|.|.+.|++++.. +........ ......|.|.++..+|+|.|+|.|.|..|...
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~--~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 75 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKP--LTPTEIGES-------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN 75 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcC--CcCCcccee-------cCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence 456799999999999999999999999887 322211111 11346799999999999999999999999988
Q ss_pred eEEEEEE
Q psy8823 316 KTVELFE 322 (386)
Q Consensus 316 ~~~~l~v 322 (386)
.++.|.|
T Consensus 76 ~~~~v~v 82 (82)
T cd05856 76 ATYKVDV 82 (82)
T ss_pred EEEEEeC
Confidence 8888754
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=92.68 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=58.3
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCC----eeeeeecCceeEEeeeee----cCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKED----TQQVLTNNQHYSISHFAT----ADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
|+.+.|.|.+.|.|.|.+.|++++ .. +............. ........|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSK--YGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcE--eCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 678999999999999999999853 22 21111111110000 011123689999999999999999999999
Q ss_pred CceeeEEEEEE
Q psy8823 312 GTSEKTVELFE 322 (386)
Q Consensus 312 g~~~~~~~l~v 322 (386)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999998877
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=89.68 Aligned_cols=70 Identities=29% Similarity=0.572 Sum_probs=56.5
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|.|.+.|++++.. +... ..... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~--~~~~-~~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGE--LPAD-RTKFE-------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeE--CCCC-ceeEe-------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47899999999999999999876 3221 11110 13467999999999999999999999999999988876
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=90.85 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=62.2
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
...+.+|+.+.|.|.+.+. .+.+.|++++.. +....++.. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~--l~~~~~~~~---------~~~~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQ--LGENNRTRI---------TGEEVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcC--CCCCceEEE---------eCCEEEECCCChhhCEEEEEEEeCCCCc
Confidence 4456789999999999886 568999999987 544444432 2347999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
....+.|.|
T Consensus 71 ~~~~~~v~V 79 (79)
T cd04973 71 DTTYFSVNV 79 (79)
T ss_pred ccEEEEEeC
Confidence 888877654
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=89.23 Aligned_cols=72 Identities=28% Similarity=0.566 Sum_probs=55.1
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee--EEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK--TVE 319 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~ 319 (386)
++|.|.+.|.|.|.+.|++++.. +.... .+... .....|.|.++..+|+|.|.|.|.|..|.... .+.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~--l~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~ 71 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTP--LSDGQGNYSVS-------SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFT 71 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEE--CCCCCccEEEe-------CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEE
Confidence 57999999999999999999987 43322 22211 12458999999999999999999999998754 555
Q ss_pred EEEE
Q psy8823 320 LFES 323 (386)
Q Consensus 320 l~v~ 323 (386)
|.|.
T Consensus 72 l~v~ 75 (77)
T cd05760 72 LSII 75 (77)
T ss_pred EEEe
Confidence 5553
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=92.10 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=63.2
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+..+.+.+|++++|.|.+.+. .+.+.|++++..+. ..++.... ...+|.|.+++.+|+|.
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~---------------~~~~~~~~----~~~~L~I~~v~~~D~G~ 69 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLV---------------PPRLQLSN----DNRTLTFNNVTRSDTGH 69 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECC---------------CCCEEEeC----CCCEEEECcCChhhCEE
Confidence 345678999999999999988 88999999875431 11222211 12379999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|+|.+.|..+...+..+.|.|
T Consensus 70 Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 70 YQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEEEEcCCCCEEeeeEEEEe
Confidence 999999988887788888776
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-13 Score=92.84 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=64.9
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE----------eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----------RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
...+..|+.+.|.|.+.|+|+|.+.|+|++..+........ ..+.|.|.++..+|+|.|+|.|.|..+.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~- 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV- 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce-
Confidence 45677899999999999999999999999998865443211 1357999999999999999999999887
Q ss_pred eeeeEEEEEE
Q psy8823 214 TRRNIAVEVE 223 (386)
Q Consensus 214 ~~~~~~l~v~ 223 (386)
.+.++.|.|+
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 5666777664
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=85.94 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=53.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
++|.|.+.|.|.|.++|+|+|..+... .....|.|.++..+|+|.|+|.+.|..+. ..+++.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAG-LEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCcc-EEEEEEEEE
Confidence 479999999999999999999887532 23568999999999999999999999886 445555544
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-13 Score=90.20 Aligned_cols=76 Identities=30% Similarity=0.482 Sum_probs=62.5
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc-eEE--------eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIY--------RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|+.++|.|.+.|.|++.++|++++..+..... ... ..+.|.|.++..+|+|.|+|.|.|..|. ....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE-DRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc-ceEEEEE
Confidence 78899999999999999999999987754322 111 1257999999999999999999999998 6678888
Q ss_pred EEEecc
Q psy8823 221 EVEFAP 226 (386)
Q Consensus 221 ~v~~~p 226 (386)
.|..+|
T Consensus 80 ~V~~~P 85 (88)
T cd05735 80 TVQEPP 85 (88)
T ss_pred EEeCCC
Confidence 887765
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-13 Score=87.22 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=57.0
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+.|.|.+.|.|.|.+.|+|++..+............|.|.++..+|+|.|+|.+.|..+. ....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence 479999999999999999999988766544456778999999999999999999998876 444444443
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-13 Score=88.23 Aligned_cols=77 Identities=21% Similarity=0.395 Sum_probs=61.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+...+.+|+.++|.|.+.+. .+.+.|+|+|..+.........+..|.|.++..+|+|.|+|.+.|..+. ....+.+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~-~~~~~~v~ 78 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS-DTTYFSVN 78 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc-ccEEEEEe
Confidence 34568899999999999886 5689999999888665555555678999999999999999999998776 34444443
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-13 Score=88.28 Aligned_cols=74 Identities=24% Similarity=0.547 Sum_probs=58.5
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|+|.+.|++++.. +........... .....|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~--l~~~~~~~~~~~-----~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMD--ITPKLSKQLTLI-----ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV 73 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEE--CCCCCCccEEEe-----CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence 46899999999999999999987 333222211111 12357999999999999999999999999999999988
Q ss_pred E
Q psy8823 323 S 323 (386)
Q Consensus 323 ~ 323 (386)
.
T Consensus 74 ~ 74 (76)
T cd05736 74 E 74 (76)
T ss_pred E
Confidence 5
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=89.09 Aligned_cols=79 Identities=29% Similarity=0.478 Sum_probs=63.5
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE----EeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI----YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
+....+.+|+.+.|.|.+.|.|.|.++|++++..+....... .....|.|.++..+|.|.|+|.|.|..|. ....
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~ 85 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ-ANVS 85 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc-eeEE
Confidence 344568899999999999999999999999998775443321 12458999999999999999999999987 4555
Q ss_pred EEEE
Q psy8823 218 IAVE 221 (386)
Q Consensus 218 ~~l~ 221 (386)
+.|.
T Consensus 86 ~~L~ 89 (90)
T cd04972 86 VQVT 89 (90)
T ss_pred EEEe
Confidence 5554
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=89.84 Aligned_cols=89 Identities=17% Similarity=0.350 Sum_probs=63.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+.|....+..|+++.|.|.+.+.|. .+.|++.+.... ....++... .......+|.|.+++.+
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~-------------~~~~~~~~~-~~~~~~~~L~I~~v~~~ 67 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKL-------------VTQQQISVV-QNDDVRSTLTIYNANIE 67 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEe-------------ccCCCEEEE-eCCCCEEEEEEecCCcc
Confidence 566778888999999999999998864 899998433210 011122211 12234568999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEE
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
|+|.|+|.+.|..+...++.+.|.
T Consensus 68 D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 68 DAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred cCEEEEEEEEcCCCCcceeEEEEE
Confidence 999999999987666656666665
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.9e-13 Score=86.89 Aligned_cols=72 Identities=28% Similarity=0.444 Sum_probs=58.7
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
|+.+.|.|.+.|.|.|.++|++++..+.... .....+..|.|.+++..|+|.|+|.+.|..|. ...++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence 6789999999999999999999998875322 12234568999999999999999999999997 556666655
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=92.80 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=66.1
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|...+....+.+|+++.|.|.+.+.|.+.+.|+|++..+...... . ..+.....+.......+.+..+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~--~-------~~~~~~~~~~~~~~~~i~~~~~ 71 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDD--P-------RSHRIVLPSGSLFFLRVVHGRK 71 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCC--C-------CcceEEecCCcEEEEEeeccCC
Confidence 477888888889999999999999999999999999988654221000 0 0000011111000012223344
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
+.+|+|.|+|.+.|..+...+..+.|.|
T Consensus 72 ~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 72 GRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CcCcCEEEEEEEEccccceecceEEEEe
Confidence 7899999999999988776777777765
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-13 Score=89.53 Aligned_cols=81 Identities=11% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCcEEEEEEEEec--CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 240 QYDMDLECHVEAY--PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 240 g~~~~l~C~~~g~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
|+.+.|.|.+.|. |.+.+.|.+++... ...................+.|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKR--GRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCccc--CCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 6889999999999 77899999887652 1111110000111112346789999999999999999999999999999
Q ss_pred EEEEE
Q psy8823 318 VELFE 322 (386)
Q Consensus 318 ~~l~v 322 (386)
..|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 88876
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=90.10 Aligned_cols=95 Identities=25% Similarity=0.407 Sum_probs=65.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.|.|...+....+..|+.++|.|.+.|.|.+.++|++++..+..... ....++..... .....|.|.++
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~---------~~~~~~~v~~~--~~~~~L~I~~v 70 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEK---------TLDGHIVVRSH--ARVSSLTLKYI 70 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCcc---------ccCccEEEEcC--ccEEEEEEecC
Confidence 46777776666677799999999999999999999997754321100 01122222211 22358999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
+.+|+|.|+|.+.|..+.. +..+.|.
T Consensus 71 ~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 96 (97)
T cd05869 71 QYTDAGEYLCTASNTIGQD-SQSMYLE 96 (97)
T ss_pred ccCcCEEEEEEEecCCCCe-eEEEEEE
Confidence 9999999999999876654 4555554
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=88.95 Aligned_cols=94 Identities=19% Similarity=0.361 Sum_probs=70.9
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCC-CeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ-YGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~ 302 (386)
+|.+ .......+.+|+.+.|.|.+.+.|+| .+.|..++..+......++.+..... .....+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~-~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTST-GSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEcc-CCCcEEEEEECCCccccCCcE
Confidence 3444 55667778899999999999999998 68888887652222234555544322 23367889999998766 799
Q ss_pred EEEEEEcCCCceeeEEEE
Q psy8823 303 YICRAANKLGTSEKTVEL 320 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l 320 (386)
|.|.|.|.+|++...+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999988876
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=85.62 Aligned_cols=68 Identities=28% Similarity=0.474 Sum_probs=53.8
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EE--ee---eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS-IY--RG---SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~--~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+.|.|.+.|.|.|.++|+|++..+...... .. .+ .+|.|.++..+|+|.|+|.+.|..|. ......|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGV-ATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCe-EEEEEEEe
Confidence 579999999999999999999887643222 21 11 27999999999999999999999997 44455554
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-12 Score=87.97 Aligned_cols=78 Identities=32% Similarity=0.614 Sum_probs=63.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
+....+.+|+.+.|.|.+.|.|.+.+.|++++..+......... ...|.|.++..+|+|.|+|.+.|..|. ....
T Consensus 10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~ 88 (92)
T cd05747 10 PRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK-QEAQ 88 (92)
T ss_pred CccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCC-EeEE
Confidence 45678999999999999999999999999999877654433222 358999999999999999999999987 4444
Q ss_pred EEE
Q psy8823 218 IAV 220 (386)
Q Consensus 218 ~~l 220 (386)
+.|
T Consensus 89 ~~l 91 (92)
T cd05747 89 FTL 91 (92)
T ss_pred EEe
Confidence 443
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-12 Score=88.76 Aligned_cols=85 Identities=22% Similarity=0.325 Sum_probs=61.1
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeC-CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKE-DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+....+..|+.+.|.|.+.|.| +.+.|++. +.. +....+..... .....+.|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~--~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 6 VPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEK--LVTQQQISVVQ----NDDVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred ecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCE--eccCCCEEEEe----CCCCEEEEEEecCCcccCEEEEEEEEc
Confidence 44556788999999999999996 49999974 443 32222222211 112457899999999999999999999
Q ss_pred CCC-ceeeEEEEEE
Q psy8823 310 KLG-TSEKTVELFE 322 (386)
Q Consensus 310 ~~g-~~~~~~~l~v 322 (386)
..| ..++++.|.|
T Consensus 79 ~~g~~~~~sv~l~~ 92 (92)
T cd04977 79 AKGTESEATVNLKI 92 (92)
T ss_pred CCCCcceeEEEEEC
Confidence 965 4566776653
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-12 Score=88.71 Aligned_cols=80 Identities=30% Similarity=0.535 Sum_probs=65.5
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
....+..|+.+.|.|.+.|.|.+.+.|++++..+....... ..+..|.|.+++.+|.|.|+|.+.|..|. ....+.
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~ 89 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIH 89 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEE
Confidence 34568899999999999999999999999998876542221 12457999999999999999999999997 566777
Q ss_pred EEEE
Q psy8823 220 VEVE 223 (386)
Q Consensus 220 l~v~ 223 (386)
|.|.
T Consensus 90 L~V~ 93 (95)
T cd05730 90 LKVF 93 (95)
T ss_pred EEEE
Confidence 7764
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=84.63 Aligned_cols=69 Identities=29% Similarity=0.604 Sum_probs=56.1
Q ss_pred cEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 152 PVQLECFAGGHPTPRISWRRENNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 152 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
++.|.|.+.|.|.|.++|+|++..+....... .....|.|.+++.+|+|.|+|.|.|..|. ....+.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGN-VQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCE-EEEEEEEE
Confidence 47899999999999999999998876554433 34557899999999999999999999997 44555544
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=86.62 Aligned_cols=72 Identities=31% Similarity=0.469 Sum_probs=59.7
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
|+.+.|.|.+.|.|.|.+.|++++..+..... .......|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence 67899999999999999999999988765432 2334678999999999999999999999887 555666655
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=89.01 Aligned_cols=71 Identities=23% Similarity=0.470 Sum_probs=54.2
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCceee-E
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSEK-T 317 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~-~ 317 (386)
+..+.|.|.+.|+|.|.++|++++..+.. ...++.. .++.|.|.++. .+|+|.|+|.|.|..|.... .
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~-~~~~~~~---------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~ 88 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDL-TNDRYSM---------VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSRE 88 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccC-CCCeEEE---------ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEcc
Confidence 45799999999999999999999987321 1222221 35679999885 68999999999999998754 4
Q ss_pred EEE
Q psy8823 318 VEL 320 (386)
Q Consensus 318 ~~l 320 (386)
+.|
T Consensus 89 a~l 91 (93)
T cd05849 89 ATL 91 (93)
T ss_pred EEE
Confidence 443
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=85.37 Aligned_cols=68 Identities=32% Similarity=0.523 Sum_probs=53.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EE-ee----eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS-IY-RG----SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~-~~----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
++|.|.+.|.|.|.++|+|++..+...... .. .. ..|.|.++..+|+|.|+|.|.|..|. .+....|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGI-VSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCE-EEEEEEEe
Confidence 579999999999999999999887643322 22 11 26999999999999999999999997 44555554
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=85.32 Aligned_cols=71 Identities=31% Similarity=0.532 Sum_probs=58.2
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
|+.+.|.|.+.|.|.+.++|++++..+........ ....|.|.+++.+|+|.|+|.+.|..|. ....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGK-ANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCc-eEEEEEEE
Confidence 67899999999999999999999988765443332 3467999999999999999999999987 44555554
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=90.19 Aligned_cols=83 Identities=24% Similarity=0.433 Sum_probs=59.1
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeec-----ccCCCeEEEE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI-----EKRQYGSYIC 305 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C 305 (386)
.+....+..|+++.|.|.+.|.|.|.+.|++++..+......+... ..++.|.|.++ ..+|.|.|+|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~--------~~~~~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ--------LPNGSLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE--------ccCCeEEEeeeeccCCCCCcCEEEEE
Confidence 3445566789999999999999999999999998732222111111 12344666665 5899999999
Q ss_pred EEEcC-CCce-eeEEEEE
Q psy8823 306 RAANK-LGTS-EKTVELF 321 (386)
Q Consensus 306 ~a~n~-~g~~-~~~~~l~ 321 (386)
.|.|. .|.. +..+.|.
T Consensus 77 ~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 77 VAQNDSLGSIVSRTARLT 94 (95)
T ss_pred EEECCccCcEEEeeeEEe
Confidence 99999 9977 4456554
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-13 Score=90.19 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=57.4
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCee--eeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQ--QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
|+.+.|.|.+.|.|.|.+.|++++.. ........... .. .......|.|.++..+|+|.|+|.|.|..|....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRG-NV---VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccC-CE---EEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 67899999999999999999997431 01111110000 00 00124689999999999999999999999999999
Q ss_pred EEEEE
Q psy8823 318 VELFE 322 (386)
Q Consensus 318 ~~l~v 322 (386)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 88864
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=86.74 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=60.2
Q ss_pred ccEEEEEEeeeeCCC--eEEEEEcCeeeCCCC--ceE------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 151 QPVQLECFAGGHPTP--RISWRRENNAILPTG--GSI------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 151 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~--~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
++++|.|.+.|.|.+ .++|++++..+.... ... ...+.|.|.+++..|+|.|+|.|.|..+. .+..+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEE
Confidence 468999999999876 689999998774321 111 13468999999999999999999999987 6778888
Q ss_pred EEEecc
Q psy8823 221 EVEFAP 226 (386)
Q Consensus 221 ~v~~~p 226 (386)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 888765
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=83.64 Aligned_cols=59 Identities=29% Similarity=0.505 Sum_probs=50.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++|.|.+.|.|.|.++|+|++..+.... ....+..|.|.++..+|+|.|+|.+.|..|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~ 59 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH-TFKRGVHLTIYEVTEKDAGNYTVVLTNPITK 59 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC-EEccCCEEEECcCCHHHCEEEEEEEEECCCc
Confidence 4689999999999999999999886543 2234567999999999999999999999886
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=86.78 Aligned_cols=71 Identities=18% Similarity=0.384 Sum_probs=55.8
Q ss_pred CCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+....+..|+++.|.|.+.|.|.| ++.|++++.. +... . ....+.|.|..+ .|.|.|.|.|.|
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~--l~~~--~---------~~~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSP--LGDP--P---------APSPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEE--CCCC--C---------CCCCCEEEEccc--cCCeEEEEEEEe
Confidence 4456778899999999999999999 7999999987 3221 1 013457888877 478999999999
Q ss_pred CCCceee
Q psy8823 310 KLGTSEK 316 (386)
Q Consensus 310 ~~g~~~~ 316 (386)
..|....
T Consensus 69 ~~G~~~s 75 (81)
T cd05749 69 AKGVTTS 75 (81)
T ss_pred ccCcEEe
Confidence 9996654
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-13 Score=91.58 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=62.2
Q ss_pred ccccCCCcEEEEEEEEe-----cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 235 LGQALQYDMDLECHVEA-----YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
..+.+|+.+.|.|.+.| .|.+.+.|++++.............. .....|.|.++..+|+|.|+|.+.|
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~-------~~~~~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMH-------QQKDLLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceee-------ecCCeEEEccCCcccCeEEEEEEcC
Confidence 44567999999999988 68889999999866322211111111 1246799999999999999999999
Q ss_pred CCCceeeEEEEEE
Q psy8823 310 KLGTSEKTVELFE 322 (386)
Q Consensus 310 ~~g~~~~~~~l~v 322 (386)
..|..+.++.|.|
T Consensus 82 ~~g~~~~~~~L~v 94 (94)
T cd05756 82 STYCMKVSISLTV 94 (94)
T ss_pred CCccEEEEEEEEC
Confidence 9999999888764
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=84.79 Aligned_cols=68 Identities=35% Similarity=0.687 Sum_probs=55.2
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
++|.|.+.|.|.|.+.|++++..+............|.|.+++.+|+|.|+|.+.|..|. ......|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK-IEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCc-EEEEEEEE
Confidence 479999999999999999998766544334445678999999999999999999999987 44555554
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=83.59 Aligned_cols=68 Identities=18% Similarity=0.378 Sum_probs=51.9
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 321 (386)
+.|.|.+.|.|+|++.|++++.+ +... ..+.. ....|.|.++..+|+|.|+|.|.|..........+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~--l~~~~~~~~~---------~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLP--AAEKCSRYHV---------DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEE--CCCCCcEEEe---------CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 36899999999999999999987 4332 22211 234799999999999999999999866555544443
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=87.36 Aligned_cols=80 Identities=31% Similarity=0.552 Sum_probs=64.6
Q ss_pred CceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCceE--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 142 TRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSI--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
+....+.+|+++.|.|.+ .|.|.+.+.|++++..+....... ...+.|.|.+++.+|+|.|+|.+.|..|...+..+
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence 345678899999999998 788999999999998876533222 23568999999999999999999999887666665
Q ss_pred EEE
Q psy8823 219 AVE 221 (386)
Q Consensus 219 ~l~ 221 (386)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05724 83 RLS 85 (86)
T ss_pred EEE
Confidence 554
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-12 Score=88.21 Aligned_cols=96 Identities=20% Similarity=0.384 Sum_probs=64.8
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|.. +.+..+.+|++++|.|.+.+.|.+.+.|+++..... +.... ...+.++... ...+..+|.|.++
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~-----~~~~~--~~~~~r~~v~--~~~~~~~L~I~~v 71 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHT-----FSEGD--KSPDGRIEVK--GQHGESSLHIKDV 71 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCce-----eccCC--cCcCceEEEe--ecCCeeEEEEeeC
Confidence 355643 667889999999999999999999999999643210 00000 0012233332 2224568999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
+.+|+|.|+|.+.|..+.. +..+.|.
T Consensus 72 ~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 97 (98)
T cd05870 72 KLSDSGRYDCEAASRIGGH-QKSMYLD 97 (98)
T ss_pred CcCCCEEEEEEEeccCCcc-eeEEEEe
Confidence 9999999999999876643 4455554
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=88.35 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=62.3
Q ss_pred eccceeeecCCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 30 ISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
.|....+.+|+++.|.|.+ .+.|.+.+.|++++..+.. .+.++.... +.+|.|.+++.+|+
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~-------------~~~~~~~~~-----~~~L~I~~~~~~D~ 63 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL-------------DNERVRIVD-----DGNLLIAEARKSDE 63 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCC-------------CCCCEEEcc-----CCEEEEeECCcccC
Confidence 3566778899999999998 6788889999998765421 012222221 23799999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEE
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|.|+|.+.|..+...+..+.|.|
T Consensus 64 G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 64 GTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred EEEEEEEEeccCceeeeeEEEEC
Confidence 99999999987776666666543
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=86.61 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=62.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-----eeeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..|. ...
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG-ETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc-eee
Confidence 4567789999999999999999999999999987765433221 1247999999999999999999999887 444
Q ss_pred eEEEE
Q psy8823 217 NIAVE 221 (386)
Q Consensus 217 ~~~l~ 221 (386)
.+.|.
T Consensus 87 ~~~v~ 91 (92)
T cd05891 87 DVTVS 91 (92)
T ss_pred EEEEE
Confidence 44443
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=87.23 Aligned_cols=72 Identities=28% Similarity=0.474 Sum_probs=57.5
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eEEeeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+|+.++|.|.+.|.|.|.++|+|++..+..... ....++.|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 478999999999999999999999988754322 23345688998875 6999999999999999865555443
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=87.35 Aligned_cols=77 Identities=25% Similarity=0.490 Sum_probs=62.0
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce---E--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---I--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
..+.+|+.+.|.|.+.|.|.+.+.|+|++..+...... . .....|.|.++..+|+|.|+|.+.|..|. ....+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEE
Confidence 35778999999999999999999999999887654322 1 12457999999999999999999999997 556666
Q ss_pred EEE
Q psy8823 220 VEV 222 (386)
Q Consensus 220 l~v 222 (386)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 653
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=85.84 Aligned_cols=73 Identities=19% Similarity=0.444 Sum_probs=54.9
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
+.|.|.+.| .|.|.+.|++++.. +............ .......|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~--l~~~~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKE--LNRKNKPRNIKIR--NKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCee--ccccCCcceEEEE--ecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 468999999 99999999999887 4332222111111 1123578999999999999999999999999887765
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=88.38 Aligned_cols=94 Identities=24% Similarity=0.365 Sum_probs=65.6
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|. .+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+... .. ..+.++... .......|.|.++
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~-------~~--~~~~~~~~~--~~~~~~~L~I~~v 69 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEG-------DK--SLDGRIVVR--GHARVSSLTLKDV 69 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCC-------Cc--cccceEEEe--CCccEEEEEECcC
Confidence 45664 455677899999999999999999999999987433110 00 011222222 2234568999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
+.+|+|.|+|.+.|..+.. +..+.|.
T Consensus 70 ~~~D~G~Y~C~a~N~~G~~-~~s~~l~ 95 (96)
T cd05732 70 QLTDAGRYDCEASNRIGGD-QQSMYLE 95 (96)
T ss_pred CcCcCEEeEEEEEeCCCCc-EEEEEEe
Confidence 9999999999999876654 5555554
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-12 Score=89.09 Aligned_cols=77 Identities=22% Similarity=0.367 Sum_probs=62.1
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE---------eeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeE
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---------RGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
.|..+.|.|.+.|.|.+.++|++++..+........ ..+.|.|.++. .+|.|.|+|.|.|..|. ....+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE-DSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEEE
Confidence 467899999999999999999999988754332111 13579999997 58999999999999998 57788
Q ss_pred EEEEEecc
Q psy8823 219 AVEVEFAP 226 (386)
Q Consensus 219 ~l~v~~~p 226 (386)
.|.+...|
T Consensus 101 ~L~~~~~p 108 (109)
T cd05773 101 QLVSTSRP 108 (109)
T ss_pred EEEecCCC
Confidence 88887665
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.1e-12 Score=86.06 Aligned_cols=80 Identities=24% Similarity=0.542 Sum_probs=58.8
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
..+..+.+|+++.|.|.+.+.+.+.+.|++++... +..+......+.++..... .....+|.|.+++.+|+|.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~------~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~nV~~~D~G~ 76 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQT------LYFGEKRALRDNRIQLVKS-TPTELIISISNVQLSDEGE 76 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccE------EEeCCeEEEeCCeEEEEeC-CCceEEEEECCCCcccCEE
Confidence 35677999999999999999888999999987532 1112222334455543322 2356799999999999999
Q ss_pred EEEEeEE
Q psy8823 111 YRCQVII 117 (386)
Q Consensus 111 Y~C~~~~ 117 (386)
|+|.+..
T Consensus 77 YtC~~~t 83 (95)
T cd05882 77 YTCSIFT 83 (95)
T ss_pred EEEEEEe
Confidence 9999875
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-12 Score=82.81 Aligned_cols=69 Identities=26% Similarity=0.498 Sum_probs=56.3
Q ss_pred cEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 152 PVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 152 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
.+.|.|.+.|.|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.+.|..|. .+..+.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEE
Confidence 478999999999999999999998754443332 2468999999999999999999999987 55555554
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=83.82 Aligned_cols=69 Identities=33% Similarity=0.697 Sum_probs=55.9
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+.|.|.+.|.|.|.+.|++++..+...... ......|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence 469999999999999999998876543222 224568999999999999999999999997 556666665
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-12 Score=84.30 Aligned_cols=75 Identities=28% Similarity=0.514 Sum_probs=59.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+..+.+.+|+++.|.|.+.|.|.| .|+|++++..+... .....+.|.|..+ .|+|.|.|.|.|..|...++...|
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 456788999999999999999999 79999999887541 1223467888887 478999999999999755555443
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=81.73 Aligned_cols=61 Identities=26% Similarity=0.560 Sum_probs=50.7
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+.++|.|.+.|.|.|.++|+|++..+............|.|.++. |+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~ 61 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGM 61 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCE
Confidence 6789999999999999999999998875544333345578899874 799999999999987
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-12 Score=84.15 Aligned_cols=70 Identities=30% Similarity=0.534 Sum_probs=56.5
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCC--CceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPT--GGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
++|.|.+.|.|.|.++|+|++..+... .... ..++.|.|.+++.+|+|.|+|.+.|..|...+....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 479999999999999999999876532 2222 235679999999999999999999999986666666665
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=86.23 Aligned_cols=76 Identities=29% Similarity=0.598 Sum_probs=61.0
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....|++++|.|.+.+.|.+.++|++++..+........ ....|.|.++..+|+|.|+|.+.|..|. ....+.|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEEEe
Confidence 3456799999999999999999999999987754433222 3467999999999999999999999887 55555554
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=83.20 Aligned_cols=66 Identities=30% Similarity=0.606 Sum_probs=54.1
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
|.|.|.+.|.|.|.++|+|++..+........ ..+.|.|.++..+|+|.|+|.+.|..|. .+..+.
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~ 67 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY-ASVSMV 67 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCc-EEEEEE
Confidence 57999999999999999999988765544332 3678999999999999999999999987 444443
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=87.24 Aligned_cols=71 Identities=24% Similarity=0.596 Sum_probs=52.0
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeee------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-e
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLT------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-E 315 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~ 315 (386)
++|.|.+.|+|.|.+.|++++...... ...++.. ...+.|.|.++..+|+|.|.|.|.|..|.. +
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL--------LSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE--------ecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 579999999999999999975431110 1111111 135689999999999999999999999977 4
Q ss_pred eEEEEE
Q psy8823 316 KTVELF 321 (386)
Q Consensus 316 ~~~~l~ 321 (386)
.++.|.
T Consensus 73 ~~~~l~ 78 (79)
T cd05734 73 KSMVLT 78 (79)
T ss_pred eEEEEe
Confidence 566654
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.7e-12 Score=85.86 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=56.9
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCC--ceEEeeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTG--GSIYRGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|+.++|.|.+.|.|.+.++|+++|..+.... .....++.|.|.++. ..|+|.|+|.|.|..|...++.+.|
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 4689999999999999999999998875332 233345678898765 5999999999999999866665554
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=82.85 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=49.2
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCc-eEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGG-SIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
+.|.|.+.|.|.|.+.|+|++..+..... ....+.+|.|.++..+|+|.|+|.+.+...
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcccc
Confidence 46899999999999999999988765422 333456899999999999999999999643
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=84.57 Aligned_cols=68 Identities=18% Similarity=0.341 Sum_probs=55.7
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
|.+...++...+.+|++++|.|.+.+.|.+ .+.|++++.. +.. ....|.|.++ .+|+|.|+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~--l~~---------------~~~~l~i~~~-~~dsG~Y~ 62 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKL--LET---------------TTNSYRIRAA-NNDSGEYR 62 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEE--eec---------------cCCeEEEeec-ccCCEEeE
Confidence 345666777888999999999999998865 7999999987 311 2567899999 99999999
Q ss_pred EEEEcCC
Q psy8823 305 CRAANKL 311 (386)
Q Consensus 305 C~a~n~~ 311 (386)
|.|.|..
T Consensus 63 C~a~~~~ 69 (78)
T cd05752 63 CQTQGSS 69 (78)
T ss_pred EECCCCc
Confidence 9999863
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-12 Score=86.09 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=60.1
Q ss_pred ccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCc-----eE---EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 151 QPVQLECFAGGHPTP--RISWRRENNAILPTGG-----SI---YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 151 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~-----~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+++.|.|.+.+.|.+ .+.|++++..+..... .. ...+.|.|.+++..|+|.|+|.+.|..+. .+....|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEE
Confidence 468999999998877 6799999988753321 11 13567999999999999999999998887 6778888
Q ss_pred EEEecc
Q psy8823 221 EVEFAP 226 (386)
Q Consensus 221 ~v~~~p 226 (386)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 888765
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-12 Score=87.73 Aligned_cols=81 Identities=31% Similarity=0.589 Sum_probs=62.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCC-----CCCCCeEEEEEEecC-CCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQI-----TKEDRGTYYCVAENG-VGK 212 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~-----~~~d~g~y~C~~~~~-~~~ 212 (386)
+....+.+|+++.|.|.+.|.|.+.++|+|++..+..... ....++.+.|.++ +..|.|.|+|.+.|. .|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 3445677899999999999999999999999988764332 1223455666665 689999999999999 888
Q ss_pred ceeeeEEEEE
Q psy8823 213 GTRRNIAVEV 222 (386)
Q Consensus 213 ~~~~~~~l~v 222 (386)
..++.+.|.|
T Consensus 86 ~~s~~~~l~v 95 (95)
T cd05722 86 IVSRTARLTV 95 (95)
T ss_pred EEEeeeEEeC
Confidence 6677766653
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-12 Score=85.43 Aligned_cols=71 Identities=30% Similarity=0.433 Sum_probs=57.4
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCC-CceEEeeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPT-GGSIYRGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|..+.|.|.+.|.|.|.++|++++..+... ......++.|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 457999999999999999999999887532 2333456789999885 6899999999999999866665554
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=84.21 Aligned_cols=70 Identities=29% Similarity=0.639 Sum_probs=55.5
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCCCce-eeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l~v 222 (386)
++|.|.+.|.|.|.++|+|+|..+....... .....|.|.++..+|+|.|+|.+.|..|... +..++|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799999999999999999998875543221 1245899999999999999999999988742 34666655
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=83.76 Aligned_cols=67 Identities=19% Similarity=0.469 Sum_probs=48.8
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc----CCCeEEEEEEEcCCCceee
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK----RQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 316 (386)
+.|.|.+.|.|.|+++|++++..+.......+... ...+.|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-------~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-------PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-------CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 47899999999999999999987322222222211 1356777877764 3789999999999998765
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-12 Score=85.18 Aligned_cols=67 Identities=22% Similarity=0.486 Sum_probs=49.7
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc----CCCeEEEEEEEcCCCceee
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK----RQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 316 (386)
+.|.|.+.|.|.|+++|++++..+......++... ...+.|.|.++.. +|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-------~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-------PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-------CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47899999999999999999987322222222211 1356788888754 7899999999999997654
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-12 Score=84.04 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=60.0
Q ss_pred ccEEEEEEeee--eCCCeEEEEEcCeeeCC--CCceE-E-----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 151 QPVQLECFAGG--HPTPRISWRRENNAILP--TGGSI-Y-----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 151 ~~v~l~C~~~~--~~~~~v~W~~~~~~~~~--~~~~~-~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+++.|.|.+.+ .+++.+.|+++|..+.. ..... . ..+.|.|.+++..|+|.|+|.|.|..+. .+....|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEE
Confidence 46899999966 45788999999998863 22221 1 2357999999999999999999999987 6788888
Q ss_pred EEEecc
Q psy8823 221 EVEFAP 226 (386)
Q Consensus 221 ~v~~~p 226 (386)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 888776
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-12 Score=83.72 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=49.9
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc----cCCCeEEEEEEEcCCCceeeE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE----KRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
+.|.|.+.|+|.|+++|++++..+......++... ...+.|.|..+. .+|+|.|+|.|.|..|.....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR-------RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe-------CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 46899999999999999999986323333333221 135678888764 247999999999999977553
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-12 Score=82.04 Aligned_cols=68 Identities=29% Similarity=0.451 Sum_probs=53.5
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EE--e---eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS-IY--R---GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~--~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
++|.|.+.|.|.|.++|+|++..+...... .. . ...|.|.+++.+|+|.|+|.+.|..|. ......|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV-VSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc-EEEEEEEe
Confidence 479999999999999999999887643221 11 1 126999999999999999999999997 44455554
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=81.24 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=52.6
Q ss_pred EEEEeeeeCCCeEEEEEcCeeeCCCCceE---------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 155 LECFAGGHPTPRISWRRENNAILPTGGSI---------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 155 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+.|.+.|.|.|.++|+|+|..+....... .....|.|.++..+|+|.|+|.|+|..|. .++++.+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~~~~~ 76 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE-DEKNVSA 76 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcc-cceEEEe
Confidence 68999999999999999999886554321 12457999999999999999999999997 4455544
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-11 Score=82.00 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC--ceeeE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG--TSEKT 317 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~ 317 (386)
|++++|.|.+.+.|.+.+.|++++.. ....... ..............|.|.+++.+|+|.|+|.|.|..+ ...++
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~--~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKD--IGKGIPE-VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCcc--CCCCceE-EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 68899999999999999999987754 1110000 0011111222467899999999999999999999876 66777
Q ss_pred EEEEEE
Q psy8823 318 VELFES 323 (386)
Q Consensus 318 ~~l~v~ 323 (386)
+.|.|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 777764
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-12 Score=84.41 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=57.2
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
|.+++.|+...+.+|++|+|.|.+.+.+. ..+.|++++..+. . ...+|.|.++
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~--------------~------------~~~~l~i~~~ 54 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE--------------T------------TTNSYRIRAA 54 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee--------------c------------cCCeEEEeec
Confidence 45777888888999999999999987665 4699999885430 0 1127899999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
.+|+|.|+|++.+. ..+..+.|.
T Consensus 55 -~~dsG~Y~C~a~~~---~~S~~v~l~ 77 (78)
T cd05752 55 -NNDSGEYRCQTQGS---SLSDPVHLE 77 (78)
T ss_pred -ccCCEEeEEECCCC---cCCCCEEEe
Confidence 99999999998742 444445554
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=81.81 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=52.3
Q ss_pred EEEEeeeeCCCeEEEEEcCeeeCCCCceE-----------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 155 LECFAGGHPTPRISWRRENNAILPTGGSI-----------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 155 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|.|.+.|.|.|.++|+|+|..+....... .....|.|.+++.+|+|.|+|.|.|..|. .+..+.+
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~~ 78 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ-DSKSISA 78 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC-eeeEEEe
Confidence 68999999999999999999887654321 11346999999999999999999999998 4444444
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=85.41 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=56.8
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+++..+.+|++++|.|.+.+.+.+.+.|++.+... +. .+......++|+.... ......+|.|.+++.+|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~----l~--~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~DsG~ 76 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQT----LY--FDDKKALRDNRIELVR-ASWHELSISISDVSLSDEGQ 76 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeE----EE--EcCcccccCCCEEEEE-CCCCcEEEEECcCCcccCEE
Confidence 45677999999999999998888899999754321 11 1111112345555422 22355689999999999999
Q ss_pred EEEEeEEc
Q psy8823 111 YRCQVIIG 118 (386)
Q Consensus 111 Y~C~~~~~ 118 (386)
|+|.+...
T Consensus 77 Y~C~~~t~ 84 (95)
T cd07701 77 YTCSLFTM 84 (95)
T ss_pred EEEEeEee
Confidence 99998863
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=84.14 Aligned_cols=69 Identities=23% Similarity=0.458 Sum_probs=52.5
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCceee
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~ 316 (386)
.++.+.|.|.+.|.|.|.++|++++..+.......+.. ..+.|.|.++. .+|+|.|+|.|+|..|....
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~---------~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL---------VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE---------ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 34679999999999999999999998732222222221 34578898876 48999999999999997644
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=84.94 Aligned_cols=74 Identities=28% Similarity=0.485 Sum_probs=58.7
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeC--------CCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAIL--------PTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~--------~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|+.+.|.|.+.|.|.+.+.|++++.... ...... ...+.|.|.+++.+|+|.|+|.+.|..|. ....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence 6789999999999999999999886531 111111 12467999999999999999999999997 5667888
Q ss_pred EEEe
Q psy8823 221 EVEF 224 (386)
Q Consensus 221 ~v~~ 224 (386)
.|..
T Consensus 80 ~V~~ 83 (90)
T cd05726 80 EVTD 83 (90)
T ss_pred EEee
Confidence 8765
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-11 Score=88.67 Aligned_cols=139 Identities=19% Similarity=0.342 Sum_probs=79.1
Q ss_pred eeeecCCcEEEEEEEeeC---CCCcEEEEecCCccccccccccCCceeEEeccceeeecC--CCcceEEEEEcccCCCCC
Q psy8823 34 QIKDIGGTVELKCSVQYA---QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD--TASSTYTLLVKDIQETDA 108 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~ 108 (386)
..+..|+.+.|+|..... ....|.|+|.+... +.......+.......-.++.+.+ ...++.+|.|.+++.+|.
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~-~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGE-EQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCC-CCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 447799999999997622 33459999965311 111222222222222222322222 234888999999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
|.|+|.+.....+. ...-.|.+-.|-........ .....-+..++.|.+.|+|.|.+.|..+.+.
T Consensus 100 GtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a~~-~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 100 GNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSER-SQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred ceEEEEEEcCCCce-eeeeeeeeeecceEEEEecc-ccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 99999998543222 22222222221111110000 0011145678999999999999999987654
|
|
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=81.03 Aligned_cols=69 Identities=38% Similarity=0.682 Sum_probs=54.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+.|.|.+.|.|.|.+.|++++..+....... .....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS-ARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence 4799999999999999999988764432221 23468999999999999999999999887 455666554
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=83.22 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=58.9
Q ss_pred eeccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+.++...+.+|++|+|.|.+.. .+...+.|+|++..+.. ...+..|.|.+++.+|
T Consensus 4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------------------------~~~~~~l~I~~~~~~d 59 (83)
T cd05753 4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------------------------SHSNSNLSIPQATLSD 59 (83)
T ss_pred EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------------------------cCCCceEEECccCHHH
Confidence 4445557899999999999853 45567999998753310 0112379999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEE
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
+|.|+|.+.+..+...+..+.|+|
T Consensus 60 sG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 60 SGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred CEEEEEEEEeCCceecCCCEEEEC
Confidence 999999999877766677666654
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=80.49 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=56.5
Q ss_pred CCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEc
Q psy8823 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 39 G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 118 (386)
|++++|.|.+.+.+.+.+.|++.+...... .. . .............+|.|.+++.+|+|.|+|.+.+.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~---------~~-~--~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 68 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKG---------IP-E--VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHES 68 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCC---------ce-E--EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence 789999999998888999999876532100 00 0 01111112223558999999999999999999876
Q ss_pred cc-ceeeeEEEEEEe
Q psy8823 119 IN-NKISAEVDLQVR 132 (386)
Q Consensus 119 ~~-~~~~~~~~l~v~ 132 (386)
.. ...+..+.|.|.
T Consensus 69 ~~~~~~~~sv~i~V~ 83 (84)
T cd05861 69 TQDQKAFKKVNITVH 83 (84)
T ss_pred ccCcceeEEEEEEEe
Confidence 43 345677777775
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-11 Score=79.95 Aligned_cols=64 Identities=31% Similarity=0.537 Sum_probs=53.5
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
|+++.|.|.+.|.|.|.++|++++..+........ ....|.|.++..+|+|.|+|.+.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 67899999999999999999999887754433221 23679999999999999999999988873
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=84.00 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=59.1
Q ss_pred eEEEeCCccEEEEEEeee-----eCCCeEEEEEcCeeeCCC----CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCce
Q psy8823 144 SLVVSEGQPVQLECFAGG-----HPTPRISWRRENNAILPT----GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 214 (386)
...+.+|+.+.|.|.+.+ .|.+.++|+|++..+... ......+..|.|.++..+|+|.|+|.+.|..+. .
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYC-M 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCcc-E
Confidence 456778999999999988 688899999998764321 112224578999999999999999999998876 4
Q ss_pred eeeEEEE
Q psy8823 215 RRNIAVE 221 (386)
Q Consensus 215 ~~~~~l~ 221 (386)
...+.|.
T Consensus 87 ~~~~~L~ 93 (94)
T cd05756 87 KVSISLT 93 (94)
T ss_pred EEEEEEE
Confidence 4455444
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=80.75 Aligned_cols=74 Identities=20% Similarity=0.410 Sum_probs=53.2
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
+.|.|.+.+ .|.+.+.|++++..+............ ......+.|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKI---RKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEE---EeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 469999875 677899999998874322211111110 11123578999999999999999999999999888765
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-11 Score=82.47 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=62.1
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+....+.+|+++.|.|.+.+ +.+.+.|++++..+..... ...++... ...|.|.+++.+|+|.
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~----------~~~~~~~~------~~~L~I~~~~~~D~G~ 65 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE----------PEERLLVT------EDGLLIRSVSPADAGV 65 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC----------cCceEEEc------CCCEEEccCCHHHCEE
Confidence 34556889999999999875 7778999999865422100 01122221 1259999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEec
Q psy8823 111 YRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
|+|.+.+.........+.|.|..
T Consensus 66 Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 66 YTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred EEEEEecCccceeEeEEEEEEec
Confidence 99999877667777778887753
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-11 Score=81.71 Aligned_cols=72 Identities=15% Similarity=0.286 Sum_probs=53.3
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC------ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN------QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
...+.+|+++.|.|.+.+.|.+.+.|++++........ .++.+. ........|.|.++..+|+|.|+|.+
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLV----KSTPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEE----eCCCceEEEEECCCCcccCEEEEEEE
Confidence 45677899999999999999999999998865222111 111111 11123578999999999999999999
Q ss_pred Ec
Q psy8823 308 AN 309 (386)
Q Consensus 308 ~n 309 (386)
..
T Consensus 82 ~t 83 (95)
T cd05882 82 FT 83 (95)
T ss_pred Ee
Confidence 87
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=80.85 Aligned_cols=69 Identities=33% Similarity=0.668 Sum_probs=53.3
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceE--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTG---GSI--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
++|.|.+.|.|.|.++|+|++....... ... ..+..|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 4789999999999999999986432221 111 23468999999999999999999999887 556666665
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=79.30 Aligned_cols=71 Identities=30% Similarity=0.609 Sum_probs=54.9
Q ss_pred CccEEEEEEeeeeCCCeEEEEEc-CeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRE-NNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
|+.+.|.|.+.|.|.|.+.|+++ +..+...... .....+|.|.++..+|.|.|+|.+.|..|. .+..+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGE-ATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEE
Confidence 67899999999999999999974 5444333222 234568999999999999999999999887 45555554
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=80.71 Aligned_cols=70 Identities=31% Similarity=0.629 Sum_probs=53.6
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCC--------CCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILP--------TGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~--------~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
++|.|.+.|.|.|.+.|++++..... .... .....+|.|.++..+|+|.|.|.+.|..|...++.+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 57999999999999999997543211 1111 1245789999999999999999999999986666666653
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.27 E-value=6e-11 Score=81.26 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=63.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC----ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
+..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+.... ........|.|.+++.+|+|.|+|.+.+..+.....+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 34567889999999999977 778999999988765432 2223345699999999999999999998766556667
Q ss_pred EEEEEE
Q psy8823 218 IAVEVE 223 (386)
Q Consensus 218 ~~l~v~ 223 (386)
+.|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 777764
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-11 Score=82.53 Aligned_cols=72 Identities=24% Similarity=0.493 Sum_probs=54.2
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcC----eeeCCCCce-------------EEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 150 GQPVQLECFAGGHPTPRISWRREN----NAILPTGGS-------------IYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~-------------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+.++|.|.+.|.|.|.++|+|++ ..+...... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 222111110 011347999999999999999999999997
Q ss_pred ceeeeEEEEE
Q psy8823 213 GTRRNIAVEV 222 (386)
Q Consensus 213 ~~~~~~~l~v 222 (386)
...++.|.|
T Consensus 81 -~~~sa~L~V 89 (90)
T cd04974 81 -SHHSAWLTV 89 (90)
T ss_pred -ccCCEEEEe
Confidence 455666665
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-11 Score=80.42 Aligned_cols=81 Identities=19% Similarity=0.343 Sum_probs=62.2
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
.+..|+.+.|.|.+.+.|.+.+.|++++.. +.......... .......|.|.++..+|.|.|.|.+.|..|..+
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~--~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~ 78 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKP--FKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSIN 78 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEE--CcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEE
Confidence 355799999999999999999999999876 33222221110 112345799999999999999999999999988
Q ss_pred eEEEEEE
Q psy8823 316 KTVELFE 322 (386)
Q Consensus 316 ~~~~l~v 322 (386)
.++.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05729 79 HTYKVDV 85 (85)
T ss_pred EEEEEeC
Confidence 8888754
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-11 Score=85.24 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=62.2
Q ss_pred eccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 109 (386)
.+....+.+|++|+|.|.+.+.+...+.|++.........+............+|+.+..+.....++|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 34566789999999999998766778999996543211111111111111345677666655668889999999999999
Q ss_pred EEEEEeEEc
Q psy8823 110 YYRCQVIIG 118 (386)
Q Consensus 110 ~Y~C~~~~~ 118 (386)
.|.|.+.+.
T Consensus 84 ~Y~C~~~~~ 92 (109)
T cd04983 84 VYFCALSES 92 (109)
T ss_pred EEEEEEecC
Confidence 999998754
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-11 Score=81.95 Aligned_cols=76 Identities=20% Similarity=0.370 Sum_probs=60.8
Q ss_pred CCcccccCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 232 KPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+....+..|+.++|.|.+.+ .|.+.+.|++++.. +.... ....+.|.|.+++.+|+|.|.|.|.|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~--~~~~~-----------~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG--LPSRA-----------MDFNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCc--CCCcc-----------cccCCEEEECCCCHHHCEEEEEEEecc
Confidence 44556788999999999875 67789999998865 22110 013568999999999999999999999
Q ss_pred CCceeeEEEE
Q psy8823 311 LGTSEKTVEL 320 (386)
Q Consensus 311 ~g~~~~~~~l 320 (386)
.|..++++.|
T Consensus 75 ~g~~~~~~~l 84 (85)
T cd05754 75 LDTDEATATL 84 (85)
T ss_pred CCeEeEEEEE
Confidence 9999988776
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-11 Score=79.23 Aligned_cols=68 Identities=19% Similarity=0.391 Sum_probs=56.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC-ceEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-GSIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+....+..|+++.|.|.+.+ +.+.+.|++++..+.... ........|.|.+++.+|+|.|+|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 45667899999999999864 577899999999887653 334456789999999999999999998764
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=79.51 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=59.8
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
++..+.+|++++|.|.+.+.....+.|++.+... ....+ .....+.|+.... ......+|.|.+++.+|+|.|
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~-----i~~~~-~~~~~d~Rf~~~~-~~~~~~tL~I~~vq~~D~G~Y 77 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQT-----IYFRD-VRPLKDSRFQLVN-FSSNELRVSLSNVSLSDEGRY 77 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcE-----EEecC-ccccCCcCEEEEe-CCCCEEEEEECcCCcccCEEE
Confidence 5567899999999999997777779999766322 11122 2334677887663 235688999999999999999
Q ss_pred EEEeEEc
Q psy8823 112 RCQVIIG 118 (386)
Q Consensus 112 ~C~~~~~ 118 (386)
+|.+...
T Consensus 78 ~Cqv~t~ 84 (95)
T cd05881 78 FCQLYTD 84 (95)
T ss_pred EEEEEcc
Confidence 9998743
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=78.76 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=69.6
Q ss_pred CcccccCCCcEEEEEEEEecCCCe-eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
....+.+|+.+.|.|.++++|+|. +.|.+++.. +.+...............-.+.|.|..+..+|+|.|+|.|.|..
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~--l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRT--LTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcc--cCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 345678999999999999999996 999999876 43333322222111223357899999999999999999999999
Q ss_pred CceeeEEEEEEE
Q psy8823 312 GTSEKTVELFES 323 (386)
Q Consensus 312 g~~~~~~~l~v~ 323 (386)
++.+.++.|.|.
T Consensus 89 ~~~s~tF~l~v~ 100 (101)
T cd05860 89 ASASVTFNVYVN 100 (101)
T ss_pred CeEEEEEEEEEe
Confidence 999999999874
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-11 Score=79.76 Aligned_cols=68 Identities=26% Similarity=0.542 Sum_probs=52.1
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eE--EeeeEEEECCCCC----CCCeEEEEEEecCCCCceeeeEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGG--SI--YRGSILKIPQITK----EDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~--~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
++|.|.+.|.|.|.++|+|++..+..... .. ...+.|.|.++.. +|+|.|+|.|.|..|...+..+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 47999999999999999999988753321 11 2357889988754 789999999999999865554443
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-11 Score=81.14 Aligned_cols=72 Identities=26% Similarity=0.493 Sum_probs=54.1
Q ss_pred CccEEEEEEeeeeCCCeEEEEEc----CeeeCCCCceE----E---------eeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRE----NNAILPTGGSI----Y---------RGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~----~~~~~~~~~~~----~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+.+.|.|.+.|.|.|.++|+++ +..+....... . ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 33332211100 0 1257999999999999999999999987
Q ss_pred ceeeeEEEEE
Q psy8823 213 GTRRNIAVEV 222 (386)
Q Consensus 213 ~~~~~~~l~v 222 (386)
...+..|.|
T Consensus 81 -~~~~a~L~V 89 (90)
T cd05858 81 -SHHSAWLTV 89 (90)
T ss_pred -ccceEEEEE
Confidence 555666655
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-11 Score=78.47 Aligned_cols=68 Identities=26% Similarity=0.475 Sum_probs=51.1
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eE--EeeeEEEECCCCC----CCCeEEEEEEecCCCCceeeeEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGG--SI--YRGSILKIPQITK----EDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~--~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+.|.|.+.|.|.|.++|+|++..+..... .. ..+++|.|..+.. .|.|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 47999999999999999999987632221 11 1356788877764 378999999999999866655543
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=80.10 Aligned_cols=83 Identities=27% Similarity=0.442 Sum_probs=61.4
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCC--ceEEe--------eeEEEECCCCCC-CCeE
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTG--GSIYR--------GSILKIPQITKE-DRGT 201 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~--~~~~~--------~~~l~i~~~~~~-d~g~ 201 (386)
||.+.. .....+.+|+.+.|.|.+.|.|.| .+.|++++..+.... ..... .+.|.|.++..+ |.|.
T Consensus 2 pp~i~~--~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIITS--EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEcC--CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence 444433 345568899999999999999998 699999998775432 12111 247999999994 4899
Q ss_pred EEEEEecCCCCceeeeEE
Q psy8823 202 YYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~ 219 (386)
|.|.|.|..|. ....+.
T Consensus 80 Y~C~A~N~~G~-~~~~~~ 96 (98)
T cd05758 80 YNCTAWNSFGS-GTAIIS 96 (98)
T ss_pred EEEEEEcCCCc-ccEEEE
Confidence 99999999987 334443
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=77.39 Aligned_cols=70 Identities=34% Similarity=0.610 Sum_probs=55.9
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCCCCce--E--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILPTGGS--I--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
+.|.|.+.|.|.+.+.|+|++..+...... . ..+..|.|.++..+|.|.|+|.+.|..|. ....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence 368999999999999999999887644321 1 12357999999999999999999999887 5566677664
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=80.20 Aligned_cols=91 Identities=20% Similarity=0.403 Sum_probs=59.6
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
++...+.+|++++|.|.+.+.+.+.+.|++.+... +.. . ......++++.... .....++|.|.+++.+|+|.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~----~~~-~-~~~~~~~~r~~~~~-~~~~~~~L~I~~v~~~DsG~ 76 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQT----LYF-N-DKRALRDNRIQLVN-FSANELSISISNVSLSDEGR 76 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcE----EEe-c-cccccccCcEEEEc-CCCCeeEEEEccCCcccCEE
Confidence 35667899999999999987777889998744321 111 1 11111234555432 23355689999999999999
Q ss_pred EEEEeEEcccceeeeEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~ 130 (386)
|+|.+...... ++.+.|.
T Consensus 77 Y~C~~~~~~~~--~~~~~~~ 94 (95)
T cd05717 77 YTCSLYTMPVQ--TAKATVT 94 (95)
T ss_pred EEEEEecCCCc--eEEEEEE
Confidence 99998865433 4444444
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-11 Score=83.11 Aligned_cols=91 Identities=22% Similarity=0.404 Sum_probs=62.7
Q ss_pred ecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCC----ceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 37 DIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTG----SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 37 ~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
..|++|+|+|.... .....+.|++..... ..... ......++++..+......+++|.|.+++.+|+|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~-----i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y 76 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLA-----IITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSY 76 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeE-----EEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEE
Confidence 47999999998764 344569999973221 11111 222233445544444455678999999999999999
Q ss_pred EEEeEEcccceeeeEEEEEEe
Q psy8823 112 RCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 112 ~C~~~~~~~~~~~~~~~l~v~ 132 (386)
.|.+....+......+.|.|+
T Consensus 77 ~c~v~~~~~~~~~~~f~L~vy 97 (97)
T cd05775 77 RAEINTKNGVTITKEFTLHIY 97 (97)
T ss_pred EEEEEcCCCCeEEEEEEEEeC
Confidence 999987766666777777764
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.1e-11 Score=77.52 Aligned_cols=68 Identities=26% Similarity=0.486 Sum_probs=50.7
Q ss_pred EEEEEEeeeeCCCeEEEEEcCeeeCC--CCceE--EeeeEEEECCCC----CCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 153 VQLECFAGGHPTPRISWRRENNAILP--TGGSI--YRGSILKIPQIT----KEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 153 v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+.|.|.+.|.|.|.++|+|++..+.. ..... ..+++|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 46999999999999999999986532 22222 235688888764 2469999999999999866555443
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-11 Score=82.25 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=57.7
Q ss_pred CCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEc
Q psy8823 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 39 G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 118 (386)
|++|+|.|.........+.|+++.....................+++..+.... .+++|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~-~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY-PNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc-CCceEEEccCCchhcEEEEEEEEcC
Confidence 899999999876556679999987654322211111111222223333222222 2369999999999999999999876
Q ss_pred ccceeeeEEEEE
Q psy8823 119 INNKISAEVDLQ 130 (386)
Q Consensus 119 ~~~~~~~~~~l~ 130 (386)
.+......+.|.
T Consensus 80 ~~~~~~~~~~l~ 91 (92)
T cd05741 80 NGVTENAKFFLR 91 (92)
T ss_pred CCcEEEEEEEEE
Confidence 555555666554
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=78.25 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=54.8
Q ss_pred CccEEEEEEeeee--CCCeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 150 GQPVQLECFAGGH--PTPRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 150 g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
|+.+.|.|.+.+. |.+.+.|++++..+..... .....+.|.|.+++.+|+|.|+|.+.|..+. .+.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD-QKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCc-eEEEE
Confidence 7889999999998 7889999987765422211 1123568999999999999999999999876 44555
Q ss_pred EEEE
Q psy8823 219 AVEV 222 (386)
Q Consensus 219 ~l~v 222 (386)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 5544
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=78.77 Aligned_cols=72 Identities=26% Similarity=0.529 Sum_probs=54.1
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCe---ee-CCCCc-----eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENN---AI-LPTGG-----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~---~~-~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
|+.+.|.|.+.|.|.|.++|+|++. .. ..... .......|.|.++..+|+|.|+|.+.|..|. ....+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCce-EEEEEEE
Confidence 6889999999999999999999742 11 11111 1123467999999999999999999999987 5566665
Q ss_pred EE
Q psy8823 221 EV 222 (386)
Q Consensus 221 ~v 222 (386)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 43
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.5e-11 Score=81.95 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=61.3
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccc-ccccCCceeEE----eccceeeecCCCcceEEEEEcc
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP-LPISTGSSLII----RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++++.+..+.+|++|.|.|.....+...+.|||......... ..+..+..... ..+|..+.. +++|.|.+
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-----ngSL~I~~ 76 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-----NGSLLIQN 76 (105)
T ss_pred eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-----CCcEEEec
Confidence 456667778999999999987544445799999643321111 11111111111 223333332 44999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
++.+|+|.|+|.+.+.........+.|.
T Consensus 77 v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 77 VTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 9999999999999876544445555544
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=77.71 Aligned_cols=82 Identities=10% Similarity=0.142 Sum_probs=58.4
Q ss_pred CCcEEEEEEEEecCCC--eeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 240 QYDMDLECHVEAYPPP--AIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
|+++.|.|.+.+.+.+ .+.|..++....... ...... .........+.|.|.+++..|+|.|+|.|.|..|....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR--SLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc--cccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 6889999999887654 789988776421111 010000 00111234678999999999999999999999999999
Q ss_pred EEEEEEE
Q psy8823 317 TVELFES 323 (386)
Q Consensus 317 ~~~l~v~ 323 (386)
+..|.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 8888875
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.5e-11 Score=77.60 Aligned_cols=60 Identities=28% Similarity=0.506 Sum_probs=49.8
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCCceE-------EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTGGSI-------YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|.|.+.| .|.+.+.|++++..+....... .....|.|.++..+|.|.|+|.+.|..|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 68 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGN 68 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCc
Confidence 469999998 8999999999998876543321 12467999999999999999999999987
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.9e-11 Score=78.78 Aligned_cols=73 Identities=30% Similarity=0.481 Sum_probs=58.5
Q ss_pred EEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 146 VVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
.+.+|++++|.|.+. +.+...+.|+|++..+... .....|.|.+++.+|+|.|+|.+.+..+...++.+.|.|
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 588999999999984 4556789999999766421 134679999999999999999999988876666666654
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=77.74 Aligned_cols=68 Identities=32% Similarity=0.495 Sum_probs=53.3
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCC--CceEEeeeEEEECCCCC-CCCeEEEEEEecCCCCceee
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPT--GGSIYRGSILKIPQITK-EDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~ 216 (386)
.|+.+.|.|.+.|.|.+.++|++++..+... .......+.|.|.++.. +|+|.|+|.+.|..|...++
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 3467999999999999999999999877432 22333456789988774 89999999999999875443
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=78.65 Aligned_cols=84 Identities=12% Similarity=0.235 Sum_probs=58.0
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeee------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
....+.+|++++|.|.+.+.|.+.+.|++.+...... ...++... .......+|.|.+++.+|+|.|+|.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~----~~~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV----RASWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEE----ECCCCcEEEEECcCCcccCEEEEEE
Confidence 3566789999999999999999999998654332111 11222211 1112456899999999999999999
Q ss_pred EEcCCCceeeEEEEE
Q psy8823 307 AANKLGTSEKTVELF 321 (386)
Q Consensus 307 a~n~~g~~~~~~~l~ 321 (386)
+.+..+ .+.+..|.
T Consensus 81 ~~t~~~-~~~~~~l~ 94 (95)
T cd07701 81 LFTMPV-KTSKAYLT 94 (95)
T ss_pred eEeecC-ccEEEEEE
Confidence 998533 35555554
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=76.92 Aligned_cols=68 Identities=18% Similarity=0.347 Sum_probs=52.7
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
|....+..|+++.|.|.+.+ +.+.+.|++++.. +... .++.+ ....|.|.+++.+|+|.|+|.|.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~--i~~~~~r~~~---------~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKV--LTPESAKYLL---------YRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEE--CCCCCceEEE---------ECCcEEEeCCCHHHCEEEEEEEEec
Confidence 34556778999999999854 6779999999988 4332 23322 2456999999999999999999987
Q ss_pred C
Q psy8823 311 L 311 (386)
Q Consensus 311 ~ 311 (386)
.
T Consensus 71 ~ 71 (87)
T cd05873 71 S 71 (87)
T ss_pred c
Confidence 4
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=79.76 Aligned_cols=82 Identities=20% Similarity=0.346 Sum_probs=53.8
Q ss_pred eeecCCcEEEEEEEeeCCCCcEEEEecCCcc-ccccccc-cCCceeEEeccceeeec-CCCcceEEEEEcccCCCCCeEE
Q psy8823 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNK-VTEPLPI-STGSSLIIRDSRFAIRY-DTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
.+.+|++|+|+|.+.+.+...+.|++++... ......+ .... ....+|+..+. ....++++|.|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~--~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGP--SKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecc--cccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 4779999999999988888889999765332 1110000 0000 01233443333 2244677999999999999999
Q ss_pred EEEeEEc
Q psy8823 112 RCQVIIG 118 (386)
Q Consensus 112 ~C~~~~~ 118 (386)
.|.+.+.
T Consensus 81 ~C~v~~~ 87 (94)
T cd07690 81 ICEVEDK 87 (94)
T ss_pred EEEECCc
Confidence 9998754
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.8e-10 Score=78.26 Aligned_cols=90 Identities=18% Similarity=0.310 Sum_probs=59.8
Q ss_pred ccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCccccc-ccc-ccCCceeE----EeccceeeecCCCcceEEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTE-PLP-ISTGSSLI----IRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~-~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i 100 (386)
+....+..|+.++|.|.+.... ...|.|.+........ .+. +..+.... ...+|..+..+...++.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3456688999999999997532 3469995533222111 111 22222221 112466666666778899999
Q ss_pred cccCCCCCeEEEEEeEEccc
Q psy8823 101 KDIQETDAGYYRCQVIIGIN 120 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~ 120 (386)
.+++.+|+|.|+|.+.+...
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCCcccCEEEEEEEEcCCC
Confidence 99999999999999997654
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=75.64 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=56.8
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
+.+.+|+++.|.|... .|.+.+.||+.......... ...+.++... +..|.|.+++.+|+|.|+|
T Consensus 6 ~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~--------~~~~~r~~~~------~~~L~I~~~~~~DsG~Y~C 70 (91)
T cd05871 6 VYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEE--------VKTEERLIHT------ERGLLLRSLQRSDAGVYTC 70 (91)
T ss_pred EEEecCCcEEEEEECC-CCCceEEEEEECCCCCcccc--------ccccccEEEe------cCeEEEeeCChhHCEEEEE
Confidence 4578999999999964 67788999995543211000 0012233221 2369999999999999999
Q ss_pred EeEEcccceeeeEEEEEEe
Q psy8823 114 QVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~ 132 (386)
.+.+...+.....+.|.|.
T Consensus 71 ~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 71 TAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred EEEccCCeEEEEEEEEEEe
Confidence 9986555555567777765
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-10 Score=81.76 Aligned_cols=105 Identities=21% Similarity=0.347 Sum_probs=68.7
Q ss_pred eeeeccceeeecCCcEEEEEEEe-eCCCCcEEEEecCCcccccccc-ccCCceeEE----eccceeeecCCCcceEEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLP-ISTGSSLII----RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i 100 (386)
++..+....+.+|++|.|.|... ......+.|++.........+. ......... ..+++.+..+....+++|.|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 44456677799999999999998 4455679999965532222221 111111111 13355556666678899999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+++.+|+|.|.|.+...........+.|.|
T Consensus 84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999999998663344444555544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-10 Score=76.14 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=55.8
Q ss_pred EEEeCCccEEEEEEeee-----eCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 145 LVVSEGQPVQLECFAGG-----HPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.+|+...|.|...+ +|.+.+.|+|++..+.........+..|.|.++..+|+|.|+|.+.|..+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 45778999999997643 256799999999988765544446788999999999999999999998765
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-10 Score=78.81 Aligned_cols=74 Identities=16% Similarity=0.341 Sum_probs=56.0
Q ss_pred cccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 234 RLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...+.+|+.+.|.|.. .|.|++.+.|++++....+....+..+. ..++.|.|.+++.+|+|.|+|.|+|...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~-------~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS-------QTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe-------CCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 3557789999999986 6889999999999865322222222111 1367899999999999999999999875
Q ss_pred ce
Q psy8823 313 TS 314 (386)
Q Consensus 313 ~~ 314 (386)
..
T Consensus 85 ~~ 86 (96)
T cd05727 85 TK 86 (96)
T ss_pred CC
Confidence 54
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-10 Score=75.74 Aligned_cols=69 Identities=28% Similarity=0.465 Sum_probs=56.0
Q ss_pred CceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+....+.+|++++|.|.+.+ .|.+.+.|++++..+... ....++.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence 45567889999999999864 678899999998764322 2233568999999999999999999998876
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.6e-10 Score=80.04 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=60.3
Q ss_pred ccceeeecCCcEEEEEEEeeCC----CCcEEEEecCC-ccccccccccCCceeEEec----cceeeecCCCcceEEEEEc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDR-NKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~ 101 (386)
+....+.+|++++|.|.+...+ ...|.|++... ......+............ +|+.+..+...++++|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4556689999999999987433 23599986421 1111122222121111122 2333334555678899999
Q ss_pred ccCCCCCeEEEEEeEEcccc-eeeeEEEEE
Q psy8823 102 DIQETDAGYYRCQVIIGINN-KISAEVDLQ 130 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~ 130 (386)
+++.+|+|.|+|.+.+.... .....+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 99999999999999875442 223444443
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=77.16 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=57.1
Q ss_pred cccCCCcEEEEEEEEe-----cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 236 GQALQYDMDLECHVEA-----YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.+.+|+.+.|.|...+ +|.|.+.|++++.. +........ ..+.|.|.++..+|+|.|+|.|.|.
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~--i~~~~~~~~---------~~~~L~I~~v~~~DsG~YtC~~~n~ 74 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKL--LEGDRKRFV---------KGSKLLIQNVTEEDAGNYTCKLTFT 74 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEE--CCCCccEEe---------cCCEEEEeeCChhhCEEEEEEEEec
Confidence 4567889999998643 25679999999987 433322111 3678999999999999999999999
Q ss_pred CCceeeEEEEEE
Q psy8823 311 LGTSEKTVELFE 322 (386)
Q Consensus 311 ~g~~~~~~~l~v 322 (386)
.+.....+...+
T Consensus 75 ~~~~~~~~t~t~ 86 (92)
T cd05757 75 HNGKQYNVTRTI 86 (92)
T ss_pred CCCEEEEEEEEE
Confidence 887766554443
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=74.43 Aligned_cols=76 Identities=26% Similarity=0.519 Sum_probs=59.3
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-----EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-----YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
..+..|+.+.|.|.+.+.|.+.+.|++++..+....... .....|.|.++..+|.|.|.|.+.|..+. ...++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS-INHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce-EEEEEE
Confidence 346689999999999999999999999988765432221 12347999999999999999999998876 455555
Q ss_pred EE
Q psy8823 220 VE 221 (386)
Q Consensus 220 l~ 221 (386)
|.
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 54
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.9e-10 Score=79.34 Aligned_cols=86 Identities=26% Similarity=0.364 Sum_probs=57.3
Q ss_pred eccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEE----eccceeeecCCCcceEEEEEcccCC
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII----RDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.|....+.+|++|+|.|.+.+ +...+.|||.........+.......... ..+++...... ...++|.|.+++.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~~~~~ 81 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS-LTRSSLTIKSAEP 81 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC-CCccEEEECCCCh
Confidence 455667899999999999986 56679999976543222222211111111 13455544332 2567999999999
Q ss_pred CCCeEEEEEeEE
Q psy8823 106 TDAGYYRCQVII 117 (386)
Q Consensus 106 ~d~G~Y~C~~~~ 117 (386)
+|+|.|.|.+.+
T Consensus 82 ~Dsg~Y~Ca~~~ 93 (110)
T cd05899 82 EDSAVYLCASSL 93 (110)
T ss_pred hhCEEEEEEeeC
Confidence 999999999864
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=77.91 Aligned_cols=79 Identities=11% Similarity=0.193 Sum_probs=54.2
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEe-------eee---ecCceeeeEEEEeecccCCCeEEEE
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS-------HFA---TADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
.+.+|+.|+|.|.+.+.+.+.+.|++++.............. .+. .........|+|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 356799999999999888899999987644322211111000 000 0112235679999999999999999
Q ss_pred EEEcCCCce
Q psy8823 306 RAANKLGTS 314 (386)
Q Consensus 306 ~a~n~~g~~ 314 (386)
.+.|..+..
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 999987654
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=77.15 Aligned_cols=93 Identities=23% Similarity=0.431 Sum_probs=56.7
Q ss_pred cCCcEEEEEEEeeCC------------CCcEEEEecCCccccccccccCCceeEEe---ccceeeec-CCCcceEEEEEc
Q psy8823 38 IGGTVELKCSVQYAQ------------DYPVIWMKVDRNKVTEPLPISTGSSLIIR---DSRFAIRY-DTASSTYTLLVK 101 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~------------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~L~i~ 101 (386)
.|++|+|+|.+.... ...|.|+|.........+.... ...... .+|+.+.. ....++++|.|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~-~~~~~~~~f~~R~sl~~~~~~~~~asL~I~ 79 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATE-GKVRVNTEYLDRVSLPNYPAIPSDATLEIT 79 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEEC-CeEEECccccCeEEecccCCCCCCcEEEEe
Confidence 489999999997432 3579999964322111111122 222111 12444432 224578899999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|.+.+.. ...+..+.|.|.
T Consensus 80 nl~~sDsG~Y~C~V~~g~-~~~~~~v~l~v~ 109 (112)
T cd05900 80 ELRSNDSGTYRCEVMHGI-EDNYDTVEVQVK 109 (112)
T ss_pred ecccccCEEEEEEEecCC-CCceeEEEEEEE
Confidence 999999999999998442 333555555553
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.1e-10 Score=78.40 Aligned_cols=89 Identities=16% Similarity=0.256 Sum_probs=57.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
+...|....+.+|++|+|.|.+.+.. ...+.|||.........+.............++... .......|.|.+++.
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~~~~ 80 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS--GSGTDFTLTISRVEP 80 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe--ccCCEEEEEECCCCh
Confidence 34456667799999999999987554 566999997643322222211111111112344443 234567899999999
Q ss_pred CCCeEEEEEeEE
Q psy8823 106 TDAGYYRCQVII 117 (386)
Q Consensus 106 ~d~G~Y~C~~~~ 117 (386)
+|+|.|.|.+.+
T Consensus 81 ~Dsg~Y~Ca~~~ 92 (106)
T cd04980 81 EDAAVYYCQQYG 92 (106)
T ss_pred HHCEEEEEEEeC
Confidence 999999998753
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=73.48 Aligned_cols=78 Identities=23% Similarity=0.529 Sum_probs=57.0
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+ ..+..|+.+.|.|.+.+.|.+.+.|++++.. +... ...+.+.++..+|.|.|+|
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~--~~~~---------------~~~~~~~~~~~~~~g~y~C 62 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSP--INSS---------------QNGLFIPNVSPEDSGNYTC 62 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEE--EEEE---------------SSEEEESSEEGGGTEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeee--eeee---------------eeeeeeeeeccccCEEEEE
Confidence 4444333 4577899999999999998899999998866 3211 1116778899999999999
Q ss_pred EEEcCCC-ceeeEEEEEE
Q psy8823 306 RAANKLG-TSEKTVELFE 322 (386)
Q Consensus 306 ~a~n~~g-~~~~~~~l~v 322 (386)
.|.|..+ ..+.++.|.|
T Consensus 63 ~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 63 RASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCCeEeeeEEeeC
Confidence 9999664 4445666554
|
... |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.4e-10 Score=79.07 Aligned_cols=85 Identities=26% Similarity=0.391 Sum_probs=56.7
Q ss_pred eeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccc-cCCce--eEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 35 IKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPI-STGSS--LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
.+.+|++|+|.|.+... +...+.|++.........+.. ..... .....+++....+...+..+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46799999999999865 566799999765321111111 11110 112234555554444478899999999999999
Q ss_pred EEEEeEEcc
Q psy8823 111 YRCQVIIGI 119 (386)
Q Consensus 111 Y~C~~~~~~ 119 (386)
|.|.+.+..
T Consensus 82 Y~C~v~~~~ 90 (105)
T cd00099 82 YYCAVSLSG 90 (105)
T ss_pred EEEEEecCC
Confidence 999997543
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=72.79 Aligned_cols=79 Identities=27% Similarity=0.444 Sum_probs=58.5
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.+...+ ..+.+|++++|.|.+.+.+...+.|++++..+. ... . .|.|.+++
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~--------------~~~----------~--~~~~~~~~ 53 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPIN--------------SSQ----------N--GLFIPNVS 53 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEE--------------EES----------S--EEEESSEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeee--------------eee----------e--eeeeeeec
Confidence 4455443 558899999999999988788899999764321 000 0 27778999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+|+|.|+|.+.+..+...+..+.|.|
T Consensus 54 ~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 54 PEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp GGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 999999999999866666677777765
|
... |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=77.75 Aligned_cols=90 Identities=21% Similarity=0.346 Sum_probs=57.6
Q ss_pred ccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCccccc-ccc-ccCCceeEEec----cceeeecCCCcceEEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTE-PLP-ISTGSSLIIRD----SRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~-~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i 100 (386)
|....+.+|++|+|.|.+.... ...+.|++........ .+. ...+....... .|+.+..+...++++|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4566788999999999987432 2459998855322111 111 11111111112 344445555567789999
Q ss_pred cccCCCCCeEEEEEeEEccc
Q psy8823 101 KDIQETDAGYYRCQVIIGIN 120 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~ 120 (386)
.+++.+|+|.|.|.+.+...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999987544
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=77.09 Aligned_cols=93 Identities=24% Similarity=0.481 Sum_probs=57.8
Q ss_pred cCCcEEEEEEEeeCC------CCcEEEEecCCcc-ccccccccCCceeEEeccce--eeec-CCCcceEEEEEcccCCCC
Q psy8823 38 IGGTVELKCSVQYAQ------DYPVIWMKVDRNK-VTEPLPISTGSSLIIRDSRF--AIRY-DTASSTYTLLVKDIQETD 107 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~------~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~L~i~~~~~~d 107 (386)
.|++|+|+|.+...+ ...|.|++..... .........+..... ..++ +... ....++.+|.|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~-~~~~~~r~~~~~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKV-YGSGRVRVPLYPADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEE-cCCCceEEEeeCCCCCcceEEECCCCHHH
Confidence 489999999987542 4569999974211 111122222222111 1222 2221 235578899999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+|.|+|.+.+. ....+..+.|.|.
T Consensus 80 ~G~Y~C~v~~~-~~~~~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDG-IEDEQDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcC-CCceEEEEEEEEE
Confidence 99999999865 3344667777664
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=78.52 Aligned_cols=90 Identities=17% Similarity=0.307 Sum_probs=59.9
Q ss_pred eeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
...+....+.+|++|+|.|..... ....+.|||.........+...........++|+....+.....++|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 344566778999999999998753 4456999996543221111111111111224566665545566789999999999
Q ss_pred CCeEEEEEeEE
Q psy8823 107 DAGYYRCQVII 117 (386)
Q Consensus 107 d~G~Y~C~~~~ 117 (386)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999874
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.8e-10 Score=69.87 Aligned_cols=63 Identities=25% Similarity=0.544 Sum_probs=49.7
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
+|+.+.|.|.+.+.|.+.+.|++++.. +.. .... ......|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~--~~~--~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKP--LPE--SNRL-------SASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEE--CCC--CCEE-------ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999998898899999998876 321 1110 11356899999999999999999999865
|
|
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.6e-10 Score=73.01 Aligned_cols=60 Identities=23% Similarity=0.455 Sum_probs=47.1
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCCc----eE----EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTGG----SI----YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~----~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|.|.+.+ .|.+.+.|++++..+..... .. .....|.|.++..+|+|.|+|.+.|..+.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence 469999864 67789999999988753321 11 12467999999999999999999998886
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=69.79 Aligned_cols=63 Identities=29% Similarity=0.451 Sum_probs=43.9
Q ss_pred CCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 39 GGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 39 G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
|++++|.|.+ ...+...+.|++++....... ..............|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~--------------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS--------------TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE--------------EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcc--------------eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 667778899999887652211 11111111111115999999999999999985
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=71.35 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=49.6
Q ss_pred EEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 243 MDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 243 ~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
+.|+|... |+|++.++|++++.. +..... ...........+.|.+.....+|++.|+|+|.|+.+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~--l~~~~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKE--LKGVIS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEE--CCCCcc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999975 688889999999998 433211 11111122356789999999999999999999998754
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-09 Score=75.84 Aligned_cols=93 Identities=22% Similarity=0.411 Sum_probs=57.9
Q ss_pred cCCcEEEEEEEeeCC----------CCcEEEEecCCccccccccccCCceeEE---eccceeeec-CCCcceEEEEEccc
Q psy8823 38 IGGTVELKCSVQYAQ----------DYPVIWMKVDRNKVTEPLPISTGSSLII---RDSRFAIRY-DTASSTYTLLVKDI 103 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~----------~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~L~i~~~ 103 (386)
.|++|+|+|.+...+ ...|.|+|............. +..... ..+|+.+.. ....++++|.|.++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~-~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l 79 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQ-DGVVKVGQEYQGRVSLPNYPENRGDASLEISRL 79 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEE-CCEEEecccccCeEEeccCCCCCCcEEEEECCC
Confidence 389999999997543 255999997432221112122 222111 123444322 23457789999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+.+|+|.|.|.+.+.. ......+.|.|.
T Consensus 80 ~~sD~G~Y~C~v~~~~-~~~~~~v~l~V~ 107 (110)
T cd05878 80 RSSDSGVYRCEVMHGI-EDEQDTVPLEVT 107 (110)
T ss_pred ChhhCEEEEEEEEeCC-CcceEEEEEEEE
Confidence 9999999999998643 344566666664
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=69.70 Aligned_cols=62 Identities=40% Similarity=0.729 Sum_probs=50.7
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+|+.++|.|.+.+.+.+.+.|++++..+............|.|.++...|+|.|+|.+.|..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 47899999998888888999999988776222223345689999999999999999998864
|
|
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.1e-10 Score=75.05 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=55.7
Q ss_pred CceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeC--CCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAIL--PTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.....+.+|+.+.|.|.. .|.|.+.+.|++++.... ...+... ..+.|.|.+++.+|+|.|+|.|.|....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 345668899999999977 788999999999987542 1222222 3578999999999999999999997654
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-09 Score=79.00 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=65.0
Q ss_pred eeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEec--cceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 34 QIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD--SRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
..|.+|++|+|.|... +.....++|+|...... .+...+.....+ +|+.+ ......+.+|.|.+++.+|+|.
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia----tY~~~g~~i~~~Fk~Rve~-mS~s~~~StItIknVt~sDeGc 99 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA----GYGPCGPVIVDKFKNKIEY-LSKSFNESTILIKNVSLKDNGC 99 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE----EEecCCcEEChhhcCeEEE-eccCCCcceEEEEeCChhhCeE
Confidence 3488999999999985 44567799999754332 222222222221 23332 2334455699999999999999
Q ss_pred EEEEeEEcccc-eeeeEEEEEEecCC
Q psy8823 111 YRCQVIIGINN-KISAEVDLQVRRPP 135 (386)
Q Consensus 111 Y~C~~~~~~~~-~~~~~~~l~v~~~p 135 (386)
|+|.+..-..+ ..+....|.|..+.
T Consensus 100 Y~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 100 YTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEEEecCCCCCceeEEEEEEEchh
Confidence 99998764444 67788888887654
|
|
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-09 Score=72.71 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=58.5
Q ss_pred cEEEEEEEeeC-CC---CcEEEEecCCccccccccccCCceeE---EeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 41 TVELKCSVQYA-QD---YPVIWMKVDRNKVTEPLPISTGSSLI---IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 41 ~v~L~C~~~~~-~~---~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
+|+|+|.+... +. .+|+|.+...........+....... ...+|..+. +...++++|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEEE
Confidence 68999999842 21 25999886432222222222211111 123455544 344577899999999999999999
Q ss_pred EeEEcccceeeeEEEEEEe
Q psy8823 114 QVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~ 132 (386)
.+.+...+..+..+.|.|+
T Consensus 81 ~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 81 EFATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEEeCCCCCeEEEEEEEEC
Confidence 9998555667888888774
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-09 Score=71.66 Aligned_cols=86 Identities=19% Similarity=0.277 Sum_probs=59.1
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeec--CCCcceEEEEE
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY--DTASSTYTLLV 100 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i 100 (386)
||.| .......+.+|+.+.|.|.+.+.|.+ .|.|.+.+..+... .+++|.+.. ........|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~------------~~~r~~I~~~~~~~g~~S~L~I 68 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESG------------TSERYTVERTSTGSGVLSTLTI 68 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCC------------CCCCEEEEEEccCCCcEEEEEE
Confidence 5666 44566778999999999999656654 57888876533110 123443322 22345568999
Q ss_pred cccCCCC-CeEEEEEeEEcccce
Q psy8823 101 KDIQETD-AGYYRCQVIIGINNK 122 (386)
Q Consensus 101 ~~~~~~d-~G~Y~C~~~~~~~~~ 122 (386)
.++...| .|.|.|.+.|..+..
T Consensus 69 ~~~~~~d~~g~Y~C~a~N~~G~d 91 (98)
T cd05898 69 NNIMEADFQTHYNCTAWNSFGSG 91 (98)
T ss_pred CCCccccCCcEEEEEEEeCCccc
Confidence 9998767 799999999877654
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=71.94 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=55.5
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCee--e----CCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNA--I----LPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
.+...+|+++.|.|.. +.|.+.+.|++.+.. . ............|.|.++..+|+|.|+|.+.+.........
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 4567789999999996 478889999985421 1 11122333456799999999999999999985433334446
Q ss_pred EEEEEE
Q psy8823 218 IAVEVE 223 (386)
Q Consensus 218 ~~l~v~ 223 (386)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 666664
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=75.81 Aligned_cols=83 Identities=23% Similarity=0.441 Sum_probs=58.2
Q ss_pred eeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 35 IKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
.+.+|++|+|.|..... ....+.|+|.........+. ..+.......+++.+..+...+.++|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~-~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIV-SEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEE-CCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 47899999999998642 44568999977554322222 22222223356666665666788899999999999999999
Q ss_pred EeEEc
Q psy8823 114 QVIIG 118 (386)
Q Consensus 114 ~~~~~ 118 (386)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 88643
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-09 Score=74.08 Aligned_cols=91 Identities=21% Similarity=0.408 Sum_probs=58.6
Q ss_pred cEEEEEEEeeCC---CCcEEEEecCCcccccccc---ccCCceeE-EeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 41 TVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLP---ISTGSSLI-IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 41 ~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
+|+|+|...... ...|.|+|.........+. ...+.... ...+|.++..+....+++|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999987443 3469999965432211111 11122111 1124555655555678899999999999999999
Q ss_pred EeEEcccceeeeEEEEEE
Q psy8823 114 QVIIGINNKISAEVDLQV 131 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v 131 (386)
.+.+...+..++.+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 998755555577777776
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=73.80 Aligned_cols=83 Identities=12% Similarity=0.216 Sum_probs=56.4
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
...+.+|++++|.|.+.+.+.+.+.|++.+....... ..++... ........|.|.+++.+|+|.|+|.+
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV----NFSANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE----cCCCCeeEEEEccCCcccCEEEEEEE
Confidence 4567789999999999888888999986443311111 1122211 11123567999999999999999999
Q ss_pred EcCCCceeeEEEEE
Q psy8823 308 ANKLGTSEKTVELF 321 (386)
Q Consensus 308 ~n~~g~~~~~~~l~ 321 (386)
.+... .++++.|.
T Consensus 82 ~~~~~-~~~~~~~~ 94 (95)
T cd05717 82 YTMPV-QTAKATVT 94 (95)
T ss_pred ecCCC-ceEEEEEE
Confidence 98753 45555554
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-09 Score=74.17 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=58.3
Q ss_pred CCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEE---eccceeeecCCCcceEEEEEcccCCCCCeEEEEE
Q psy8823 39 GGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLII---RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114 (386)
Q Consensus 39 G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 114 (386)
|++|+|+|....... ..|.|+|.................... ..++.... .....+++|.|.+++.+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEEE
Confidence 789999999764432 359999964332111111111111111 11232222 3445678999999999999999999
Q ss_pred eEEcccceeeeEEEEEEe
Q psy8823 115 VIIGINNKISAEVDLQVR 132 (386)
Q Consensus 115 ~~~~~~~~~~~~~~l~v~ 132 (386)
+.....+..+..+.|.|+
T Consensus 80 ~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 80 FNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred EEeCCCCCeeeEEEEEEC
Confidence 987666667777888773
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=75.13 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=53.5
Q ss_pred eeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 35 IKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
.+.+|++|+|.|.+... ....+.||+.........+............+++.... .....+|.|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEE
Confidence 46799999999998754 45569999977654332222221111111134555433 336778999999999999999
Q ss_pred EEeEE
Q psy8823 113 CQVII 117 (386)
Q Consensus 113 C~~~~ 117 (386)
|.+.+
T Consensus 80 C~~~~ 84 (98)
T cd04984 80 CQVWD 84 (98)
T ss_pred EEEcc
Confidence 98763
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=77.47 Aligned_cols=87 Identities=21% Similarity=0.338 Sum_probs=57.7
Q ss_pred ccceeeecCCcEEEEEEEee--CCCCcEEEEecCCccccccc-cccCCceeEE----eccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQY--AQDYPVIWMKVDRNKVTEPL-PISTGSSLII----RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~--~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
|....+.+|++|+|.|.+.+ .+...+.||+.........+ .......... ...++....+.....++|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 45556889999999999876 45667999997543322111 1111111111 23456555444446789999999
Q ss_pred CCCCCeEEEEEeEE
Q psy8823 104 QETDAGYYRCQVII 117 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~ 117 (386)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999998763
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-09 Score=70.84 Aligned_cols=76 Identities=21% Similarity=0.399 Sum_probs=51.0
Q ss_pred cEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeee-cCceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eE
Q psy8823 242 DMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFAT-ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KT 317 (386)
Q Consensus 242 ~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~ 317 (386)
.+.|.|.+.| +|.+.++|++++.. +..... ....... ......+.|.+.....+|.|.|+|.|.|...... .+
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~--l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s 77 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEV--LDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETS 77 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEE--ccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEE
Confidence 3689999987 68889999999987 433221 1111111 1122456788888888899999999999875443 44
Q ss_pred EEE
Q psy8823 318 VEL 320 (386)
Q Consensus 318 ~~l 320 (386)
+.|
T Consensus 78 ~~l 80 (82)
T cd05759 78 VTL 80 (82)
T ss_pred EEE
Confidence 444
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-09 Score=67.42 Aligned_cols=63 Identities=17% Similarity=0.397 Sum_probs=43.8
Q ss_pred CCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 240 QYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 240 g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
|+.++|.|.+ .+.+...+.|++++..... ...... ..........|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~--~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPE--GSTTNR---STNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSE--EEEEEE---EETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccC--cceeEe---ecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 6667779999999876222 111111 1111112225999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=74.91 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=55.0
Q ss_pred CcEEEEEEEeeCC---CCcEEEEecCCccccccccccC-CceeEEe--ccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 40 GTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPIST-GSSLIIR--DSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 40 ~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
++|+|.|.+.... ...|.|+|.............. ....... ..|..+... ..++.+|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNS-SLEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCC-CCCceEEEEccCCcccCEEEEE
Confidence 5799999988544 3469999976542111111111 0111111 223222222 1267799999999999999999
Q ss_pred EeEEcccceeeeEEEEEE
Q psy8823 114 QVIIGINNKISAEVDLQV 131 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v 131 (386)
.+.....+.....+.|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 987655555677777766
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-09 Score=75.00 Aligned_cols=93 Identities=29% Similarity=0.514 Sum_probs=57.6
Q ss_pred cCCcEEEEEEEeeCC------CCcEEEEecCCccccc-cccccCCceeEE---eccceeeecCCCcceEEEEEcccCCCC
Q psy8823 38 IGGTVELKCSVQYAQ------DYPVIWMKVDRNKVTE-PLPISTGSSLII---RDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~------~~~v~W~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
.|++|+|+|.+...+ ...|.|+|........ ......+..... ..+|+.+.. ...++.+|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRR-AHDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecC-CCCCcEEEEEccCChHH
Confidence 489999999987542 3459999976332111 111222211111 123444422 23457799999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+|.|+|.+.+. .+.....+.|.|.
T Consensus 80 sG~Y~C~v~~~-~~~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDG-LEDESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEec-ccceEEEEEEEEE
Confidence 99999999764 3345666766664
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-09 Score=68.99 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=48.6
Q ss_pred EEEEEEe-eeeCCCeEEEEEcCeeeCCCC------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFA-GGHPTPRISWRRENNAILPTG------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~-~~~~~~~v~W~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|+|.. .+.|++.++||+++..+.... ......+.|.+.....+|++.|+|+|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 6899998 678999999999999885432 11234567999999999999999999998765
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=99.00 E-value=5e-09 Score=75.85 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=58.1
Q ss_pred ccceeeecCCcEEEEEEEeeCC------CCcEEEEecCCcccc-ccccccCCce--eEEeccceeeecCCCcceEEEEEc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ------DYPVIWMKVDRNKVT-EPLPISTGSS--LIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~------~~~v~W~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
|+...+.+|++|+|+|.+.... ...+.||+....... .......... .....+|+....+...++++|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4556789999999999876332 244899997654211 1111111111 111234666665677888999999
Q ss_pred ccCCCCCeEEEEEeEE
Q psy8823 102 DIQETDAGYYRCQVII 117 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~ 117 (386)
+++.+|+|.|.|.+..
T Consensus 86 ~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 86 DAQPEDSGKYFFRVEL 101 (119)
T ss_pred cCChhhCeEEEEEEEc
Confidence 9999999999998864
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=69.55 Aligned_cols=81 Identities=25% Similarity=0.532 Sum_probs=61.6
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeC-CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKE-DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..+..|+++.|.|.+.+.+.+.+.|+++ +.. +....+....... ....|.|.++..+|+|.|.|.+.+..+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--v~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKL--LAESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEE--cCCCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4456899999999998887889999998 555 3323333322111 1568999999999999999999999888
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00409 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 877777665
|
|
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=69.55 Aligned_cols=81 Identities=25% Similarity=0.532 Sum_probs=61.6
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeC-CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKE-DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..+..|+++.|.|.+.+.+.+.+.|+++ +.. +....+....... ....|.|.++..+|+|.|.|.+.+..+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--v~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKL--LAESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEE--cCCCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4456899999999998887889999998 555 3323333322111 1568999999999999999999999888
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00410 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 877777665
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=72.58 Aligned_cols=87 Identities=16% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.+...|. .+|.+|++|+|.|... .+...+.|++++...... ........+.|.|.++
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-------------------~~~~~~~~~~f~i~~v 60 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-------------------KPPEPQNKAKFFIPSM 60 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-------------------ccCCCceeEEEEccCC
Confidence 466777654 4688999999999875 556679999988643110 0011233458999999
Q ss_pred CCCCCeEEEEEeEEcc--cceeeeEEEEEE
Q psy8823 104 QETDAGYYRCQVIIGI--NNKISAEVDLQV 131 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v 131 (386)
+.+|+|.|+|+..+.. ....+..+.|.|
T Consensus 61 ~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 61 KREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred ChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 9999999999987642 123344455544
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.4e-09 Score=73.36 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=55.1
Q ss_pred CCcEEEEEEEeeCC---CCcEEEEecCCccccccccccCCcee-----EEeccceeeec-CCCcceEEEEEcccCCCCCe
Q psy8823 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSL-----IIRDSRFAIRY-DTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 39 G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G 109 (386)
|++|+|+|.+.... ...+.|++..... .......+... ....+|+.+.. ....++.+|.|.+++.+|+|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~--~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G 78 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSP--AVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG 78 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCce--eEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE
Confidence 78999999986332 2358999965321 11111111111 01123444432 23456789999999999999
Q ss_pred EEEEEeEEcccceeeeEEEEEE
Q psy8823 110 YYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 110 ~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.|+|.+.+..+. ....+.|.|
T Consensus 79 ~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 79 LYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEEecCCcE-EEEEEEEEE
Confidence 999999875443 566666655
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=69.21 Aligned_cols=83 Identities=23% Similarity=0.377 Sum_probs=57.1
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEec-CCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKV-DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|+++.|.|.+.+.+...+.|+++ +..+. .+.++....... ..+|.|.+++..|+|.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------------~~~~~~~~~~~~--~~~l~i~~~~~~d~G~ 65 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--------------ESGRFSVSRSGS--NSTLTISNVTPEDSGT 65 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--------------CCCcEEEEEcCC--eeEEEEEeeccccCeE
Confidence 345678999999999999777788999997 43221 122222222211 4589999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|.|.+.+..+.... .+.|.|
T Consensus 66 Y~C~v~~~~~~~~~-~~~l~V 85 (86)
T smart00410 66 YTCAATNSSGSASS-TTTLTV 85 (86)
T ss_pred EEEEEEcCCCeEEE-EEEEEE
Confidence 99999865444433 355554
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=69.21 Aligned_cols=83 Identities=23% Similarity=0.377 Sum_probs=57.1
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEec-CCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKV-DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|+++.|.|.+.+.+...+.|+++ +..+. .+.++....... ..+|.|.+++..|+|.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------------~~~~~~~~~~~~--~~~l~i~~~~~~d~G~ 65 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--------------ESGRFSVSRSGS--NSTLTISNVTPEDSGT 65 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--------------CCCcEEEEEcCC--eeEEEEEeeccccCeE
Confidence 345678999999999999777788999997 43221 122222222211 4589999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|.|.+.+..+.... .+.|.|
T Consensus 66 Y~C~v~~~~~~~~~-~~~l~V 85 (86)
T smart00409 66 YTCAATNSSGSASS-TTTLTV 85 (86)
T ss_pred EEEEEEcCCCeEEE-EEEEEE
Confidence 99999865444433 355554
|
|
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=70.06 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=57.9
Q ss_pred CcEEEEEEEeeC-CCCcEEEEecCCccccccccccC--Ccee-EEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 40 GTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPIST--GSSL-IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 40 ~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
++|+|+|..... ....|+|.|.............. +... ....+|..+. +....+.+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence 478999998743 33469999865322111111111 1100 1112344443 34556789999999999999999999
Q ss_pred EEcccceeeeEEEEEE
Q psy8823 116 IIGINNKISAEVDLQV 131 (386)
Q Consensus 116 ~~~~~~~~~~~~~l~v 131 (386)
.....+..++.+.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 8777777777777776
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-09 Score=70.34 Aligned_cols=75 Identities=16% Similarity=0.308 Sum_probs=49.2
Q ss_pred cceeeecCCcEEEEEEEe-----------eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 32 QEQIKDIGGTVELKCSVQ-----------YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~-----------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
....+.+|+.+.|.|... ......+.|||++......... ...+.|.+... ..|.|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~-------~~~~~Ri~~~~------~~Lwf 74 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEI-------IFDGVRMSKEE------DSIWF 74 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcc-------cccceeEEEeC------CEEEE
Confidence 345688999999999962 1223469999987443221110 00112333322 28999
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
.++..+|+|.|+|++.|..
T Consensus 75 ~Pa~~eDSG~Y~C~~rN~t 93 (104)
T cd05896 75 RPAELQDSGLYTCVLRNST 93 (104)
T ss_pred EeCChhhCeEEEEEECCCC
Confidence 9999999999999998653
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=71.66 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=52.9
Q ss_pred cceeeecCCcEEEEEE-EeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe-
Q psy8823 32 QEQIKDIGGTVELKCS-VQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG- 109 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G- 109 (386)
+...+.+|+.+.|.|. ..+.|.+.|.|++++... ...+.|+.... +++|.|.+++.+|+|
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~-------------i~~~~Ri~~~~-----~GnL~fs~v~~~D~g~ 72 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH-------------ITQDERVSMGQ-----NGNLYFANVEEQDSHP 72 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc-------------ccccccEEECC-----CceEEEEEEehhhCCC
Confidence 4566899999999997 578899999999765321 11234444432 348999999999999
Q ss_pred EEEEEeEEcc
Q psy8823 110 YYRCQVIIGI 119 (386)
Q Consensus 110 ~Y~C~~~~~~ 119 (386)
.|.|.|.+..
T Consensus 73 ~Y~C~a~~~~ 82 (95)
T cd05845 73 DYICHAHFPG 82 (95)
T ss_pred CeEEEEEccc
Confidence 8999998754
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=71.33 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=58.3
Q ss_pred ecCCCceEEEeCCccEEEEEE-eeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCe-EEEEEEecCCCC
Q psy8823 138 SDNSTRSLVVSEGQPVQLECF-AGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRG-TYYCVAENGVGK 212 (386)
Q Consensus 138 ~~~~~~~~~~~~g~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g-~y~C~~~~~~~~ 212 (386)
.......+.+.+|+.+.|.|. ..|.|.+.+.|++++........+.. ..+.|.|.++..+|.| .|.|.|.|....
T Consensus 6 ~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 6 PKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred CccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 334456678999999999997 58999999999987655433333222 3578999999999999 899999987544
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.3e-09 Score=68.81 Aligned_cols=74 Identities=26% Similarity=0.587 Sum_probs=49.2
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecC-CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYP-PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+.......+. +.|.|.+.+.+ .+.+.|+ +.... ... .........+.|.|.++..+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~-~~~--------~~~~~~~~~~~L~i~~v~~~~~g~y 69 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS-FNS--------NSRGSSSSNSTLTISNVTRSDNGTY 69 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE-EEE--------EEEEEEEEEEEEEESSCCGGGTEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc-eee--------eeeeccceeeEEEEccCCHHhCcEE
Confidence 35555555444444444 99999999887 6699999 11110 000 1111123578899999999999999
Q ss_pred EEEEEc
Q psy8823 304 ICRAAN 309 (386)
Q Consensus 304 ~C~a~n 309 (386)
+|.|+|
T Consensus 70 ~C~a~N 75 (75)
T PF13927_consen 70 TCIASN 75 (75)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999987
|
... |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=67.67 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=58.9
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....+.+|+++.|.|...+. .+.+.|++++..+............|.|.+++.+|+|.|.|.+.-..-...-..+.+.|
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 34578899999999998764 66999999999886654555556668899999999999999997443332333444443
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=70.21 Aligned_cols=94 Identities=21% Similarity=0.437 Sum_probs=58.0
Q ss_pred cCCcEEEEEEEeeCC-------CCcEEEEecCC--ccccccccccCCceeE---Eeccceeeec-CCCcceEEEEEcccC
Q psy8823 38 IGGTVELKCSVQYAQ-------DYPVIWMKVDR--NKVTEPLPISTGSSLI---IRDSRFAIRY-DTASSTYTLLVKDIQ 104 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~-------~~~v~W~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~L~i~~~~ 104 (386)
.|++|+|+|.+...| .+.|.|++... ...........+.... ...+|..+.. ....++.+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378999999977332 35699998632 1111111222222211 1223444433 234578899999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
.+|+|.|+|.+.... ...+..+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~-~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGI-NDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECC-cccEEEEEEEEE
Confidence 999999999998643 444666677664
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=70.74 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=58.9
Q ss_pred CCCcEEEEEEEEecC------CCeeEEEeCC-----ee-eeeecCceeEE------eeeeecCceeeeEEEEeecccCCC
Q psy8823 239 LQYDMDLECHVEAYP------PPAIVWIKED-----TQ-QVLTNNQHYSI------SHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p------~~~~~W~~~~-----~~-~~~~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
.|++|+|.|.....+ ...+.|++.. .. +.......... ............+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 388999999987653 3489999873 11 11111111111 001011123578999999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 301 GSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999988889999998875
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=69.84 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=53.0
Q ss_pred eeeecCCcEEEEEEEe-----eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 34 QIKDIGGTVELKCSVQ-----YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~-----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
+.+.+|.+..|.|.-. ....+.++|||++..+.. .+.++.... +...|.|.+++.+|+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-------------~~~~~~~~~----~~~~L~I~~v~~~D~ 67 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-------------DNEKFYSLK----GSTYLHIIDVSLNDS 67 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-------------CCcceEecC----CCCEEEEEEcChhhC
Confidence 4577899999999731 235568999999865421 111111100 112699999999999
Q ss_pred eEEEEEeEEcccce---eeeEEEEEE
Q psy8823 109 GYYRCQVIIGINNK---ISAEVDLQV 131 (386)
Q Consensus 109 G~Y~C~~~~~~~~~---~~~~~~l~v 131 (386)
|.|+|++.+..++. .++.+.|.|
T Consensus 68 G~YtC~~~~~~~g~~y~vtr~~~l~v 93 (95)
T cd05897 68 GYYTCKLQFTHEGKKYNITRIIKLRI 93 (95)
T ss_pred EEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence 99999999865443 344445544
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.4e-08 Score=72.19 Aligned_cols=121 Identities=17% Similarity=0.290 Sum_probs=73.3
Q ss_pred eEEEeCCccEEEEEEeee---eCCCeEEEEEcCe----eeCCC-------------CceE----EeeeEEEECCCCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGG---HPTPRISWRRENN----AILPT-------------GGSI----YRGSILKIPQITKEDR 199 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~~----~~~~~-------------~~~~----~~~~~l~i~~~~~~d~ 199 (386)
.+.+..|+.+.|+|.... .....|+|+|.+. ..... .... .++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 445678999999998742 2345799999432 11100 0000 1245799999999999
Q ss_pred eEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCee
Q psy8823 200 GTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ 265 (386)
Q Consensus 200 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~ 265 (386)
|+|+|.+...... ..+.-.+.+..+-.+.+.........-+..++.|.+-|+|.|.+.|..+...
T Consensus 100 GtY~C~fQkge~~-~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 100 GNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred ceEEEEEEcCCCc-eeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 9999999875433 2121222221111122221111122245678999988899999999977654
|
|
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=66.83 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=53.6
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
...+.+|+++.|+|...+ ..+.+.|++++..+. .+.++....+ .|.|.+++..|+|.|.
T Consensus 5 ~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~--------------~~~r~~~~~~------GLlI~~~~~~dsG~Y~ 63 (85)
T cd05872 5 NRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLN--------------AQFSYRVGTD------GLLILVTSPEHSGTYR 63 (85)
T ss_pred EEEEecCCCEEEECCCCC-CCccEEEEECCcccC--------------CCcceEEeCC------CCEEEECCHhhCEEEE
Confidence 456889999999999874 466899999987641 1223333222 4889999999999999
Q ss_pred EEeEEcccceeeeEEEEEE
Q psy8823 113 CQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v 131 (386)
|.+.-..-......+.|.|
T Consensus 64 C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 64 CYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred EEEecCCCeEEEEEEEEEE
Confidence 9976332223334445544
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-08 Score=68.18 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=51.8
Q ss_pred eEEEeCCccEEEEEEe-e----------eeCCCeEEEEEcCeeeCCCC-------ceEEeeeEEEECCCCCCCCeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFA-G----------GHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQITKEDRGTYYCV 205 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~-~----------~~~~~~v~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~ 205 (386)
...+.+|+.+.|.|.. . ......+.|+|++....... +....+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 4568899999999985 1 11234799999975543322 3344578899999999999999999
Q ss_pred EecCCCC
Q psy8823 206 AENGVGK 212 (386)
Q Consensus 206 ~~~~~~~ 212 (386)
+.|....
T Consensus 89 ~rN~t~C 95 (104)
T cd05896 89 LRNSTYC 95 (104)
T ss_pred ECCCCcc
Confidence 9987654
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=67.37 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=52.2
Q ss_pred CccEEEEEEeeeeC--CCeEEEEEcCeeeCCC---C-------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 150 GQPVQLECFAGGHP--TPRISWRRENNAILPT---G-------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 150 g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~---~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
|+++.|.|.+.+.+ ...+.|...++..... . ......+.|.|.+++.+|+|.|+|.+.|..+. ....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~-~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMI-AKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceE-eccc
Confidence 78899999997755 4578998877543211 1 01123568999999999999999999997765 4455
Q ss_pred EEEEEE
Q psy8823 218 IAVEVE 223 (386)
Q Consensus 218 ~~l~v~ 223 (386)
..|.|+
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 555554
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-07 Score=64.91 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=62.7
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCe-EEEEEcCeeeCCCCc--eEE-------eeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPR-ISWRRENNAILPTGG--SIY-------RGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~--~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.+.+|+.+.|.|.++++|+|. +.|.+++..+..... ... -.+.|.+.+++.+|.|.|+|.+.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456799999999999999999997 999998775432222 111 2367999999999999999999998877
Q ss_pred ceeeeEEEEEE
Q psy8823 213 GTRRNIAVEVE 223 (386)
Q Consensus 213 ~~~~~~~l~v~ 223 (386)
.+..+.|.|.
T Consensus 91 -~s~tF~l~v~ 100 (101)
T cd05860 91 -ASVTFNVYVN 100 (101)
T ss_pred -EEEEEEEEEe
Confidence 5566666653
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.8e-08 Score=68.39 Aligned_cols=93 Identities=23% Similarity=0.460 Sum_probs=56.4
Q ss_pred CCcEEEEEEEeeCC-----------CCcEEEEecC-----CccccccccccCCceeEEe---ccceeeec-CCCcceEEE
Q psy8823 39 GGTVELKCSVQYAQ-----------DYPVIWMKVD-----RNKVTEPLPISTGSSLIIR---DSRFAIRY-DTASSTYTL 98 (386)
Q Consensus 39 G~~v~L~C~~~~~~-----------~~~v~W~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~L 98 (386)
|++|+|+|.+...| ...|.|++-. ............+...... .+|..+.. ....++.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999998433 2359999852 1111122222222222211 22333322 234578899
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
.|.+++.+|+|.|+|++.+.. ......+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~-~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGI-EDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECC-cccEEEEEEEEE
Confidence 999999999999999998653 334566666654
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-08 Score=70.04 Aligned_cols=82 Identities=21% Similarity=0.430 Sum_probs=53.2
Q ss_pred eeecCCcEEEEEEEeeC-CCCcEEEEecCCcccccc----ccccCCceeE----EeccceeeecCCCcceEEEEEcccCC
Q psy8823 35 IKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEP----LPISTGSSLI----IRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+.+|++|+|.|..... ....+.||+......... .......... ...+++..........+.|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47899999999998653 345699999766421111 1111111111 11345655444455677899999999
Q ss_pred CCCeEEEEEeE
Q psy8823 106 TDAGYYRCQVI 116 (386)
Q Consensus 106 ~d~G~Y~C~~~ 116 (386)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999864
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=69.48 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=50.7
Q ss_pred cccCCCcEEEEEE-EEe----cCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 236 GQALQYDMDLECH-VEA----YPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 236 ~~~~g~~~~l~C~-~~g----~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+..|.+..|.|. .++ ++.+.+.|+|++.. +.... ++... .....|.|.++..+|+|.|+|.|.|
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~--l~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~YtC~~~~ 76 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVL--LDKDNEKFYSL-------KGSTYLHIIDVSLNDSGYYTCKLQF 76 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEE--CcCCCcceEec-------CCCCEEEEEEcChhhCEEEEEEEEE
Confidence 3456788999997 233 35668999999987 43222 11110 0235699999999999999999999
Q ss_pred CCCcee
Q psy8823 310 KLGTSE 315 (386)
Q Consensus 310 ~~g~~~ 315 (386)
..|...
T Consensus 77 ~~~g~~ 82 (95)
T cd05897 77 THEGKK 82 (95)
T ss_pred eeCCEE
Confidence 987654
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.7e-08 Score=63.16 Aligned_cols=72 Identities=19% Similarity=0.351 Sum_probs=53.9
Q ss_pred EEEEEEee-eeCCCeEEEEEcCeeeCCCCc-------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 153 VQLECFAG-GHPTPRISWRRENNAILPTGG-------SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 153 v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
++|.|.+. +.|.+.|+|++++..+..... .....+.|.|..-..+|+..|+|++.|..-........|.|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 68999985 568889999999988765322 1223567888777777777999999997765566777888776
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-08 Score=67.08 Aligned_cols=74 Identities=20% Similarity=0.226 Sum_probs=49.9
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.+... +..+|.+|++|+|.|.... ....+.|+|++....... .. ........+.+.|.+++
T Consensus 2 P~l~a~-p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~-----------~~-----~~~~~~~~a~f~I~~~~ 63 (94)
T cd05711 2 PFLSAH-PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH-----------LY-----EKHHGGFQASFPLGPVT 63 (94)
T ss_pred CEEEec-CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee-----------cc-----cccCCeEEEEEEecCCC
Confidence 455554 3556889999999998764 456699999886531100 00 00011234479999999
Q ss_pred CCCCeEEEEEeE
Q psy8823 105 ETDAGYYRCQVI 116 (386)
Q Consensus 105 ~~d~G~Y~C~~~ 116 (386)
.+|+|.|+|...
T Consensus 64 ~~~~G~Y~C~~~ 75 (94)
T cd05711 64 PAHAGTYRCYGS 75 (94)
T ss_pred cccCEEEEEEEE
Confidence 999999999875
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=67.08 Aligned_cols=86 Identities=16% Similarity=0.274 Sum_probs=57.2
Q ss_pred CCCcEEEEEEEEecC------CCeeEEEeCCee-----e-eeecCceeEE------eeeeecCceeeeEEEEeecccCCC
Q psy8823 239 LQYDMDLECHVEAYP------PPAIVWIKEDTQ-----Q-VLTNNQHYSI------SHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p------~~~~~W~~~~~~-----~-~~~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
.|++++|.|.....| ...+.|++.... . .......... ............+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 378999999987653 236999986421 1 1111110000 000001112356899999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 301 GSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|.|.+.+..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999999999998875
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=5e-08 Score=66.83 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=53.1
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+ ...+..|+.|+|.|... .+...+.|+++|........ ........|.|.+++.+|+|.|+|
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~----------~~~~~~~~f~i~~v~~~~~G~Y~C 70 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP----------PEPQNKAKFFIPSMKREHAGRYRC 70 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc----------CCCceeEEEEccCCChhHCEEEEE
Confidence 4455443 45678999999999884 55668999999875221100 011246779999999999999999
Q ss_pred EEEcC
Q psy8823 306 RAANK 310 (386)
Q Consensus 306 ~a~n~ 310 (386)
.+.|.
T Consensus 71 ~~~~~ 75 (91)
T cd05751 71 YYRSG 75 (91)
T ss_pred EEECC
Confidence 99987
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=64.61 Aligned_cols=89 Identities=15% Similarity=0.238 Sum_probs=53.1
Q ss_pred CcEEEEEEEeeC-CCCcEEEEecCCccccccccccC--Ccee-EEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 40 GTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPIST--GSSL-IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 40 ~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
+.++|.|..... ...+|+|.|...........+.. +... ....+|..+.. ....+.+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~-~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLN-STREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEec-CCCCccEEEEcCCCcccCEEEEEEE
Confidence 468999998632 34558999975422111222211 2111 01123444432 2236789999999999999999999
Q ss_pred EEcccceeeeEEEE
Q psy8823 116 IIGINNKISAEVDL 129 (386)
Q Consensus 116 ~~~~~~~~~~~~~l 129 (386)
.....+..++.+.+
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 87655555555544
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=66.12 Aligned_cols=86 Identities=16% Similarity=0.304 Sum_probs=57.5
Q ss_pred CCCcEEEEEEEEecC------------CCeeEEEeCCe--e-eee-ecCceeEEe-eeee-------cCceeeeEEEEee
Q psy8823 239 LQYDMDLECHVEAYP------------PPAIVWIKEDT--Q-QVL-TNNQHYSIS-HFAT-------ADEFTDTTIRVIT 294 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p------------~~~~~W~~~~~--~-~~~-~~~~~~~~~-~~~~-------~~~~~~~~L~i~~ 294 (386)
.|++++|.|...... .+.+.|++-.. . ..+ ....+.... .+.. .......+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 488999999986432 34899997421 1 111 111111110 1100 1123578999999
Q ss_pred cccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 295 IEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
++.+|+|.|+|.+.+........+.|.|..
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999999888888999988875
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-07 Score=66.17 Aligned_cols=86 Identities=17% Similarity=0.350 Sum_probs=57.5
Q ss_pred CCCcEEEEEEEEecC----------CCeeEEEeCC--eeee--eecCceeEE-eeeee-------cCceeeeEEEEeecc
Q psy8823 239 LQYDMDLECHVEAYP----------PPAIVWIKED--TQQV--LTNNQHYSI-SHFAT-------ADEFTDTTIRVITIE 296 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p----------~~~~~W~~~~--~~~~--~~~~~~~~~-~~~~~-------~~~~~~~~L~i~~~~ 296 (386)
.|++++|.|.....+ ...+.|++.. .... ......... ..+.. ........|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999986544 2469999852 2111 111111110 01110 112346789999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999888888999998865
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=66.46 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCcEEEEEEEEecCC---CeeEEEeCCeeeee--ecCce---------e--EEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 240 QYDMDLECHVEAYPP---PAIVWIKEDTQQVL--TNNQH---------Y--SISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 240 g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~--~~~~~---------~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
|++++|.|....... ..+.|++......+ ..... + +.............+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678999999853322 26889886532111 11000 0 00000011112357899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v 322 (386)
+|.+.|..+..++.+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888888888876
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=64.11 Aligned_cols=73 Identities=11% Similarity=0.272 Sum_probs=53.0
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeee------ecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVL------TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
....+.+|++++|.|.+.+.....+.|++.+..... ....++..... .....+|.|++++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~----~~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF----SSNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC----CCCEEEEEECcCCcccCEEEEEE
Confidence 346678999999999998887778899877754321 12333333221 12456799999999999999999
Q ss_pred EEc
Q psy8823 307 AAN 309 (386)
Q Consensus 307 a~n 309 (386)
+..
T Consensus 81 v~t 83 (95)
T cd05881 81 LYT 83 (95)
T ss_pred EEc
Confidence 975
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=63.74 Aligned_cols=70 Identities=24% Similarity=0.400 Sum_probs=49.0
Q ss_pred cEEEEEEeee-eCCCeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEE
Q psy8823 152 PVQLECFAGG-HPTPRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAV 220 (386)
Q Consensus 152 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l 220 (386)
.+.|.|.+.| .|.+.++|++++..+..... .....+.|.+.....+|.|.|+|.+.|.... ....+++|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999976 68889999999987643211 1112356888888888899999999986543 23445554
Q ss_pred E
Q psy8823 221 E 221 (386)
Q Consensus 221 ~ 221 (386)
.
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 4
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=68.64 Aligned_cols=87 Identities=25% Similarity=0.344 Sum_probs=56.4
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCC-cee---EEeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTG-SSL---IIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|....+.+|++|+|.|...... ...+.|||.........+. .... ... ....+++....+.......|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 35566789999999999876433 3559999977543322221 1111 111 111345655544444566899999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|+|.|.|.+.
T Consensus 83 ~~~~Dsa~YyCa~~ 96 (117)
T cd04981 83 LTPEDTAVYYCARG 96 (117)
T ss_pred CCHHHCEEEEEEEE
Confidence 99999999999875
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.73 E-value=6e-08 Score=67.72 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=55.3
Q ss_pred CCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeee-----e-eecCceeEE---eeeeecCceeeeEEEEeecccCCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQ-----V-LTNNQHYSI---SHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~-----~-~~~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
+....+.+|+++.|.|.. .|.. .++|+|..... . ......... .......-..+++|.|.+++.+|+
T Consensus 5 ~~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 5 LVPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred ccCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 334567789999999864 4544 89999964320 0 001100000 000011112457899999999999
Q ss_pred eEEEEEEEcCC-CceeeEEEEEE
Q psy8823 301 GSYICRAANKL-GTSEKTVELFE 322 (386)
Q Consensus 301 G~Y~C~a~n~~-g~~~~~~~l~v 322 (386)
|.|+|.+.+.. ...+..+.|.|
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEEEC
Confidence 99999999987 45556666643
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.7e-08 Score=65.03 Aligned_cols=74 Identities=24% Similarity=0.369 Sum_probs=50.5
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|.|...+.......+. ++|.|.+.+.+ ...+.|+. .. .............+..|.|.+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~-~~------------------~~~~~~~~~~~~~~~~L~i~~ 60 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYD-SN------------------PSFNSNSRGSSSSNSTLTISN 60 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEET-EE------------------EEEEEEEEEEEEEEEEEEESS
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEe-cC------------------CceeeeeeeccceeeEEEEcc
Confidence 46777777776655555 99999998766 77899991 10 000011111122345899999
Q ss_pred cCCCCCeEEEEEeEE
Q psy8823 103 IQETDAGYYRCQVII 117 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~ 117 (386)
+..+|.|.|+|.|.|
T Consensus 61 v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 61 VTRSDNGTYTCIASN 75 (75)
T ss_dssp CCGGGTEEEEEEEEE
T ss_pred CCHHhCcEEEEEEEC
Confidence 999999999999875
|
... |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-07 Score=60.58 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=53.1
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc-eeeEEEE
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT-SEKTVEL 320 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l 320 (386)
+.|.|.+.| .|.+.|+|++++.. +...... ...........++|.|..-..+|+..|+|.|.|+.-. .+.+..|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~--l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L 77 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKE--LTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYL 77 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEE--CcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEE
Confidence 689999876 67779999999988 4332111 1122223346788999887888888899999997642 3455666
Q ss_pred EEEe
Q psy8823 321 FESI 324 (386)
Q Consensus 321 ~v~~ 324 (386)
.|.+
T Consensus 78 ~V~y 81 (82)
T cd05883 78 EVQY 81 (82)
T ss_pred EEEE
Confidence 6543
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=66.05 Aligned_cols=74 Identities=16% Similarity=0.300 Sum_probs=53.4
Q ss_pred cCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 238 ALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..|+.++|.|.+.|+ |. +.++|++++.. +..... .......+......+.|.+.....++.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~--~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKE--LTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEE--CCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999997 54 48999999988 433332 2222333333445667888877778999999999998764
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-07 Score=67.01 Aligned_cols=80 Identities=26% Similarity=0.415 Sum_probs=51.4
Q ss_pred eeecCCcEEEEEEEeeCCCCcEEEEecCCc--ccccccc-ccCC-ceeEE----eccceeeecCCCcceEEEEEcccCCC
Q psy8823 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRN--KVTEPLP-ISTG-SSLII----RDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~--~~~~~~~-~~~~-~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
.+.+|++|+|.|.........+.||+.... .....+. .... ..... ...++.... .....+|.|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHH
Confidence 367899999999986554566999997754 2211122 1111 11111 123444322 336778999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|.+.
T Consensus 80 DsgtY~Ca~~ 89 (104)
T cd05720 80 NEGYYFCSVA 89 (104)
T ss_pred HCEEEEEEEc
Confidence 9999999865
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-05 Score=64.72 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=101.3
Q ss_pred EEEEEcccCCCCCeEEEEEeEEccc-ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC---eEEEEE
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP---RISWRR 171 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~ 171 (386)
..|.|..++...+|.|+-...+..+ ....+.+.+..+.+|.+..... .+.+|+...-.|.+..+.++ .++|++
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH---AVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 3599999999999999998765443 2334567788888887665443 36789999999999655433 599999
Q ss_pred cCeeeCCCCce----------EEeeeEEEECCCCCCCC-eEEEEEEecCCCC----ceeeeEEEEEEecceEeeCCCccc
Q psy8823 172 ENNAILPTGGS----------IYRGSILKIPQITKEDR-GTYYCVAENGVGK----GTRRNIAVEVEFAPVITVPKPRLG 236 (386)
Q Consensus 172 ~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~ 236 (386)
|+..+...... ....+++++........ =..+|.+.-.... ..+....-.|+.+|.+.+....
T Consensus 259 ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~F~d-- 336 (466)
T PHA03270 259 GGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEMEFGG-- 336 (466)
T ss_pred CCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEEEeC--
Confidence 99877532211 11234555544332222 2789998543222 1234445566677766654222
Q ss_pred ccCCCcEEEEEEEEecCCC-eeEEEeCCee
Q psy8823 237 QALQYDMDLECHVEAYPPP-AIVWIKEDTQ 265 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~ 265 (386)
-...|.+.--|.- .+.|+.++..
T Consensus 337 ------G~AVCtA~CVPegV~l~W~V~D~~ 360 (466)
T PHA03270 337 ------DEAVCTAACVPEGVTLAWLLGADP 360 (466)
T ss_pred ------CEEEEeccccCCCCEEEEEecCCC
Confidence 2345777655543 8999887755
|
|
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-07 Score=65.20 Aligned_cols=83 Identities=13% Similarity=0.212 Sum_probs=50.9
Q ss_pred CcccccCCCcEEEEEEEEecC----CCeeEEEeCCee------eeee-cCceeE--------EeeeeecCceeeeEEEEe
Q psy8823 233 PRLGQALQYDMDLECHVEAYP----PPAIVWIKEDTQ------QVLT-NNQHYS--------ISHFATADEFTDTTIRVI 293 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~~~~~------~~~~-~~~~~~--------~~~~~~~~~~~~~~L~i~ 293 (386)
....+..|+.+.|.|...... ...+.|.+.... +... .+..+. ...+.......+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 345677899999999986643 237999542210 0001 111110 000111112356789999
Q ss_pred ecccCCCeEEEEEEEcCCCcee
Q psy8823 294 TIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
+++.+|.|.|+|.+.|+-+...
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcCC
Confidence 9999999999999999876443
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-07 Score=61.45 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=46.5
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
+.|.|.+.+ +|.+.++|++++.. +.... ..........+...+.|.+.....++++.|+|.|.|+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~--l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKE--LKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEE--ccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999976 58889999999987 43322 11111111222345567777777778889999999987654
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.6e-07 Score=61.80 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=33.7
Q ss_pred eeeEEEEeecccCCCeEEEEEEEc-CCCceeeEEEEEE
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAAN-KLGTSEKTVELFE 322 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 322 (386)
.+++|.|.+++.+|.|.|+|.+.| +.|+.+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 468999999999999999999999 7888888888876
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-07 Score=63.14 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=55.9
Q ss_pred CCCcEEEEEEEEecC-------CCeeEEEeCC-----eee--eeecCceeE--------EeeeeecCceeeeEEEEeecc
Q psy8823 239 LQYDMDLECHVEAYP-------PPAIVWIKED-----TQQ--VLTNNQHYS--------ISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p-------~~~~~W~~~~-----~~~--~~~~~~~~~--------~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.|++++|.|...-.| .+.+.|.+.. ... ......... .............+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378899999975333 3579998752 111 111111110 101111112257899999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999887888899998864
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-07 Score=63.48 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=52.2
Q ss_pred CcEEEEEEEEecC---CCeeEEEeCCee----eeeec---Cc------eeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 241 YDMDLECHVEAYP---PPAIVWIKEDTQ----QVLTN---NQ------HYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 241 ~~~~l~C~~~g~p---~~~~~W~~~~~~----~~~~~---~~------~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
++|+|.|.....+ ...+.|++.... +.... .. ..+.. +. ........|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~-~~-~~~~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVS-FL-NSSLEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEE-Ee-CCCCCceEEEEccCCcccCEEEE
Confidence 4689999987654 237999986532 00000 00 00000 00 01114678999999999999999
Q ss_pred EEEEc-CCCceeeEEEEEE
Q psy8823 305 CRAAN-KLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n-~~g~~~~~~~l~v 322 (386)
|.+.+ +.|..++.+.|.|
T Consensus 79 C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEeCCCCcEEEEEEEEe
Confidence 99875 7788888888876
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-05 Score=69.28 Aligned_cols=171 Identities=18% Similarity=0.222 Sum_probs=107.3
Q ss_pred ceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEccc--ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee
Q psy8823 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN--NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 84 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
++.+-.....++..|.|.++...++|.|+-++.+... ......+.+.++.+|.+..... .+.+|+...-.|.+..
T Consensus 277 ~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA~ 353 (566)
T PHA03269 277 KYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVNK 353 (566)
T ss_pred eEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEeee
Confidence 3444344455667899999999999999877654322 2345677788888886665433 3778999999999965
Q ss_pred eCCC---eEEEEEcCeeeCCC----------CceEEeeeEEEECCCCCCC--CeEEEEEEecCCCCc----eeeeEEEEE
Q psy8823 162 HPTP---RISWRRENNAILPT----------GGSIYRGSILKIPQITKED--RGTYYCVAENGVGKG----TRRNIAVEV 222 (386)
Q Consensus 162 ~~~~---~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d--~g~y~C~~~~~~~~~----~~~~~~l~v 222 (386)
+.++ .++|++|+..+... ++.....++|.+......| -=..+|.+.-..... .+....-.|
T Consensus 354 YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~V 433 (566)
T PHA03269 354 YYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDV 433 (566)
T ss_pred ecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCcc
Confidence 5433 59999998777531 1122334556664432222 336799985432221 133445566
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCee
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQ 265 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~ 265 (386)
..+|.+.+.... -...|.+.-.|. ..+.|+.++..
T Consensus 434 Y~~PtISm~Fed--------G~AVCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 434 YPFPNVSIEIID--------GHIVCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred ccCCeEEEEEeC--------CEEEEecccccCCCceEEEEecCCC
Confidence 667766554221 234688766665 37999877755
|
|
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.4e-07 Score=63.84 Aligned_cols=72 Identities=25% Similarity=0.372 Sum_probs=51.3
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCC--------C---------c--eEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPT--------G---------G--SIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--------~---------~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
|++|+|.|.........+.|+++....... . . ....+.+|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 789999998876556689999876432110 0 0 01124689999999999999999999877
Q ss_pred CCceeeeEEEE
Q psy8823 211 GKGTRRNIAVE 221 (386)
Q Consensus 211 ~~~~~~~~~l~ 221 (386)
+......+.|.
T Consensus 81 ~~~~~~~~~l~ 91 (92)
T cd05741 81 GVTENAKFFLR 91 (92)
T ss_pred CcEEEEEEEEE
Confidence 66555555554
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=61.97 Aligned_cols=75 Identities=28% Similarity=0.414 Sum_probs=48.5
Q ss_pred cEEEEEEEeeCCC--CcEEEEecCCccccccccccC--CceeE--EeccceeeecCCCcceEEEEEcccCCCCCeEEEEE
Q psy8823 41 TVELKCSVQYAQD--YPVIWMKVDRNKVTEPLPIST--GSSLI--IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114 (386)
Q Consensus 41 ~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 114 (386)
.|+|.|.+..... ..+.|++.........+.... ..... ...+|+........+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999885544 369999976532212222111 11111 12456666555557788999999999999999996
Q ss_pred e
Q psy8823 115 V 115 (386)
Q Consensus 115 ~ 115 (386)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
|
|
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-07 Score=64.51 Aligned_cols=79 Identities=11% Similarity=0.257 Sum_probs=53.5
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCee---ee-ee--------cCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ---QV-LT--------NNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~---~~-~~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
.+....+.+|++++|.|.+.+.+...+.|++.... .. +. ...++.+. .........|.|.+++.+
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSAT---LDKSRKSSSLHISAAQLS 80 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEE---EcccCCEEEEEECCCCHH
Confidence 34456788999999999998777779999985421 00 00 11112111 111124678999999999
Q ss_pred CCeEEEEEEEcCCC
Q psy8823 299 QYGSYICRAANKLG 312 (386)
Q Consensus 299 d~G~Y~C~a~n~~g 312 (386)
|+|.|.|.+.+..+
T Consensus 81 DsG~Y~C~~~~~~~ 94 (109)
T cd04983 81 DSAVYFCALSESGG 94 (109)
T ss_pred HCEEEEEEEecCCC
Confidence 99999999997654
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-06 Score=60.66 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=36.0
Q ss_pred eeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
...+|.|.+++.+|+|.|.|.+.+.....+..+.|.|..
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 468999999999999999999999999999999998875
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.8e-07 Score=62.74 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=54.7
Q ss_pred cCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCc----eeEEe--eeeec--CceeeeEEEEeecccCCCeEEEEEEE
Q psy8823 238 ALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQ----HYSIS--HFATA--DEFTDTTIRVITIEKRQYGSYICRAA 308 (386)
Q Consensus 238 ~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~----~~~~~--~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~ 308 (386)
..|++|+|.|.... .....+.|++........... ..... .+... ....+..|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46999999998754 333479999986543333221 11000 01000 11235789999999999999999999
Q ss_pred cCCCce-eeEEEEEE
Q psy8823 309 NKLGTS-EKTVELFE 322 (386)
Q Consensus 309 n~~g~~-~~~~~l~v 322 (386)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 988655 45666654
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=58.61 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=46.8
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeec-CceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATA-DEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
++|.|.+.| +|.+.|+|++++.. +..... ........ .+...+.|.+.....+|+..|+|.|.|+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~--l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQE--LEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEE--CCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 689999987 48889999999987 433221 11111111 22234667777777888889999999987544
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=67.62 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=100.2
Q ss_pred eEEEEEcccCCCCCeEEEEEeEEccc-ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC---eEEEE
Q psy8823 95 TYTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP---RISWR 170 (386)
Q Consensus 95 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~ 170 (386)
+..|.|..++..++|.|+-+..+..+ ......+.+..+.+|.+..... .+.+|+...-.|.+..+.++ .++|+
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 36799999999999999877654322 2234556666688887665433 37789999999999654433 69999
Q ss_pred EcCeeeCCCCc-----------eEEeeeEEEECCCCC-CCCeEEEEEEecCCCC-ce---eeeEEEEEEecceEeeCCCc
Q psy8823 171 RENNAILPTGG-----------SIYRGSILKIPQITK-EDRGTYYCVAENGVGK-GT---RRNIAVEVEFAPVITVPKPR 234 (386)
Q Consensus 171 ~~~~~~~~~~~-----------~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~-~~---~~~~~l~v~~~p~~~~~~~~ 234 (386)
+|+..+..... .....++|.+..... +.-=..+|.+.-.... .. +....-.|..+|.+.+....
T Consensus 274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~F~~ 353 (486)
T PHA03273 274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVTVED 353 (486)
T ss_pred eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEEEeC
Confidence 99998762211 112234565555433 2333789998543222 11 23444556667766553221
Q ss_pred ccccCCCcEEEEEEEEecCC--CeeEEEeCCe
Q psy8823 235 LGQALQYDMDLECHVEAYPP--PAIVWIKEDT 264 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~ 264 (386)
-...|.+.--|. ..+.|+.++.
T Consensus 354 --------G~AVCtA~CVP~egV~l~W~v~D~ 377 (486)
T PHA03273 354 --------GDAVCTAKCVPSTGVFVSWSVNDH 377 (486)
T ss_pred --------CEEEEecccccCCCeeEEEEccCC
Confidence 234688876665 4899987763
|
|
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.52 E-value=7e-07 Score=59.59 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=47.0
Q ss_pred EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 243 MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 243 ~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
++|.|.+.| +|...++|+++|.. +...............+...+.|.+.....+++..|+|.|.|.....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~--l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKE--IKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEE--CcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 689999987 66668999999988 43332222111122223346677777666778888999999986543
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=61.10 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=51.2
Q ss_pred cEEEEEEEEecC---CCeeEEEeCCee-----eeeec---Ccee-----EEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 242 DMDLECHVEAYP---PPAIVWIKEDTQ-----QVLTN---NQHY-----SISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 242 ~~~l~C~~~g~p---~~~~~W~~~~~~-----~~~~~---~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
+++|.|.....+ ...+.|++.... +.... +... ....+..........|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986443 227999984321 11100 0110 0011111112346789999999999999999
Q ss_pred EEEc-CCCceeeEEEEEE
Q psy8823 306 RAAN-KLGTSEKTVELFE 322 (386)
Q Consensus 306 ~a~n-~~g~~~~~~~l~v 322 (386)
.+.+ +.|..++.+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 7787788888776
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=61.01 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=52.6
Q ss_pred CCcEEEEEEEEecCCC-eeEEEeCCee--eee--e---cCc----eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 240 QYDMDLECHVEAYPPP-AIVWIKEDTQ--QVL--T---NNQ----HYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~-~~~W~~~~~~--~~~--~---~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
|++++|.|........ .+.|++.... ..+ . ... .+.-.............|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6889999997554333 6999985321 000 0 000 01000011112235678999999999999999997
Q ss_pred E-cCCCceeeEEEEEE
Q psy8823 308 A-NKLGTSEKTVELFE 322 (386)
Q Consensus 308 ~-n~~g~~~~~~~l~v 322 (386)
. .+.|..+..+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 56788788888776
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=60.10 Aligned_cols=83 Identities=11% Similarity=0.229 Sum_probs=53.2
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC-CCCc--EEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA-QDYP--VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+.+.+.+..+.+|+.++|.|.+.+. |... |.||+++..+....... ..........+|.+.
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~--------------~~~~~~~~~stlt~~ 67 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD--------------NTKSPVNAPATITIT 67 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc--------------ccCCCceeEEEEEEe
Confidence 356677777778999999999999864 5555 79999887663211100 000111223467776
Q ss_pred ccCCCCCeEEEEEeEEcccc
Q psy8823 102 DIQETDAGYYRCQVIIGINN 121 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~ 121 (386)
..+.+|.-.|+|++.++...
T Consensus 68 ~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 68 VDREDHGANFSCETELDLRP 87 (100)
T ss_pred cchhhCCcEEEEEEEeccCc
Confidence 55555555999999876543
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-06 Score=61.87 Aligned_cols=81 Identities=15% Similarity=0.308 Sum_probs=49.5
Q ss_pred CcccccCCCcEEEEEEEEecCC----CeeEEEeC----Ceeeee--ecCc-------eeEEe-eeeecCceeeeEEEEee
Q psy8823 233 PRLGQALQYDMDLECHVEAYPP----PAIVWIKE----DTQQVL--TNNQ-------HYSIS-HFATADEFTDTTIRVIT 294 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~----~~~~W~~~----~~~~~~--~~~~-------~~~~~-~~~~~~~~~~~~L~i~~ 294 (386)
..+.+.+|++++|.|.....++ ..+.|++. +....+ .... ++... .+..........|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 4456788999999999865432 25999752 111111 1100 11000 00111122467899999
Q ss_pred cccCCCeEEEEEEEcCCCc
Q psy8823 295 IEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~ 313 (386)
++.+|+|.|+|.+.|..+.
T Consensus 86 v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CChhhCEEEEEEEEeCCCC
Confidence 9999999999999988764
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-06 Score=60.19 Aligned_cols=79 Identities=14% Similarity=0.277 Sum_probs=48.0
Q ss_pred cccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEEeeeee-cCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 234 RLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSISHFAT-ADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
......|+.++|.|.+.|+.+ ..++|++||.. +..... ......+ ..+...+.|.+.....++.-.|+|.+.+.
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~--~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNE--LSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHR 91 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEE--Cccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeC
Confidence 334557888999999988544 38999999988 332211 1111111 12334556666654444334599999998
Q ss_pred CCcee
Q psy8823 311 LGTSE 315 (386)
Q Consensus 311 ~g~~~ 315 (386)
.....
T Consensus 92 ~l~~p 96 (111)
T cd05772 92 TLQAP 96 (111)
T ss_pred CCCCC
Confidence 65443
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.4e-07 Score=63.36 Aligned_cols=81 Identities=17% Similarity=0.341 Sum_probs=52.0
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCee---eeee--cCcee--E----Eeeee-ecCceeeeEEEEeecccC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ---QVLT--NNQHY--S----ISHFA-TADEFTDTTIRVITIEKR 298 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~---~~~~--~~~~~--~----~~~~~-~~~~~~~~~L~i~~~~~~ 298 (386)
.+....+.+|++++|.|.+.+ +.+.+.|++.... ..+. ..... . ...+. .........|.|.+++.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 445667889999999999977 6678999986421 1111 00000 0 00011 111114578999999999
Q ss_pred CCeEEEEEEEcCCC
Q psy8823 299 QYGSYICRAANKLG 312 (386)
Q Consensus 299 d~G~Y~C~a~n~~g 312 (386)
|+|.|.|.+.+..+
T Consensus 83 Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 83 DSAVYLCASSLGGG 96 (110)
T ss_pred hCEEEEEEeeCCCC
Confidence 99999999987543
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=59.94 Aligned_cols=87 Identities=11% Similarity=0.196 Sum_probs=62.1
Q ss_pred eeccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccc-cCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPI-STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+++....+..|+.++|.|.+++... ..+.|+|......+-.... ..+........++....+......+|.|.+++
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 4456667889999999999976532 4589999776632212221 12222223456777888888899999999999
Q ss_pred CCCCeEEEEEe
Q psy8823 105 ETDAGYYRCQV 115 (386)
Q Consensus 105 ~~d~G~Y~C~~ 115 (386)
.+|++.|.|..
T Consensus 83 a~DTa~Y~Ca~ 93 (115)
T cd05721 83 ANQTDIYFCKI 93 (115)
T ss_pred HHHCeEEEEEe
Confidence 99999999964
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.8e-06 Score=57.45 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=52.1
Q ss_pred CcEEEEEEEEecCCC-eeEEEeCCee----eeeec---Cc----eeE-EeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 241 YDMDLECHVEAYPPP-AIVWIKEDTQ----QVLTN---NQ----HYS-ISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 241 ~~~~l~C~~~g~p~~-~~~W~~~~~~----~~~~~---~~----~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
++++|.|.....+.. .+.|.|.... +.... +. .+. ...+. .....+++|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence 368999998643333 7999875321 11111 00 000 00011 12234789999999999999999996
Q ss_pred -EcCCCceeeEEEEEE
Q psy8823 308 -ANKLGTSEKTVELFE 322 (386)
Q Consensus 308 -~n~~g~~~~~~~l~v 322 (386)
..+.|+.++++.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 567899999998876
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.2e-06 Score=58.03 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=52.7
Q ss_pred eCCCcccccCCCcEEEEEEEEe-cCCCe--eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 230 VPKPRLGQALQYDMDLECHVEA-YPPPA--IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g-~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
+.+....+.+|+.++|.|.+.| .|.+. +.|++++.. +....... ..........+|++..-..+|+-.|+|.
T Consensus 6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~--l~~~~~~~---~~~~~~~~~stlt~~~~r~D~g~~~sC~ 80 (100)
T cd05755 6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNET--LSRQPFGD---NTKSPVNAPATITITVDREDHGANFSCE 80 (100)
T ss_pred EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEE--cccceecc---ccCCCceeEEEEEEecchhhCCcEEEEE
Confidence 3344455689999999999976 56665 799999988 43321110 1111223466777766666666679999
Q ss_pred EEcCCCce
Q psy8823 307 AANKLGTS 314 (386)
Q Consensus 307 a~n~~g~~ 314 (386)
|.+..+..
T Consensus 81 A~l~l~~~ 88 (100)
T cd05755 81 TELDLRPE 88 (100)
T ss_pred EEeccCcc
Confidence 99987654
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-06 Score=57.44 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=48.0
Q ss_pred CCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 240 QYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 240 g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
|+.+.+.|.+. |+|+|.+.|+.++... ...................+.|.+..-..++...++|.|.|+.-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV--VASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE--CEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce--eeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 77999999864 6888899999999883 1111111111122222345678887766677788999999987554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-06 Score=61.36 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=49.3
Q ss_pred CCcccccCCCcEEEEEEEEecC----CCeeEEEeCCe----eee-e-e-cCceeE--Eeee------eecCceeeeEEEE
Q psy8823 232 KPRLGQALQYDMDLECHVEAYP----PPAIVWIKEDT----QQV-L-T-NNQHYS--ISHF------ATADEFTDTTIRV 292 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p----~~~~~W~~~~~----~~~-~-~-~~~~~~--~~~~------~~~~~~~~~~L~i 292 (386)
+..+.+.+|++++|.|...... ...+.|++... ... + . ...... ...+ ..........|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3445677899999999986532 13699986322 110 1 0 000000 0000 0011123478999
Q ss_pred eecccCCCeEEEEEEEcCCCc
Q psy8823 293 ITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.+++.+|+|.|.|.+.|....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999988654
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-06 Score=57.60 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=46.4
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC----CceEEeeeEEEECCCCCCCCeEEEEEEec
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT----GGSIYRGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
..+.+|++|+|.|.... ....+.|+|++...... .........+.|.+++.+|+|.|.|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 35778999999997754 44579999988763221 11112345789999999999999999853
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.1e-05 Score=62.91 Aligned_cols=171 Identities=18% Similarity=0.307 Sum_probs=98.1
Q ss_pred ceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEcccce-eeeEEEEEEe-cCCeeecCCCceEEEeCCccEEEEEEeee
Q psy8823 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDLQVR-RPPVISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 84 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~-~~p~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
+|.+-.+....+..|.|+++...|+|.|+-...+..... ..+.+.+.+. .+|.+..... .+.+|+...-.|.+..
T Consensus 195 ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~---PVL~Ge~YkAtC~vAn 271 (490)
T PHA03271 195 KYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP---PVLSGENYKASCIVRH 271 (490)
T ss_pred eeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC---ccccCCCceEEEEeee
Confidence 444444455667789999999999996644443322221 2333444444 4554554333 3678999999999965
Q ss_pred eCCC---eEEEEEcCeeeCCCCceE------------EeeeEEEECCCCCCCCeEEEEEEecCCCC---ceeeeEEEEEE
Q psy8823 162 HPTP---RISWRRENNAILPTGGSI------------YRGSILKIPQITKEDRGTYYCVAENGVGK---GTRRNIAVEVE 223 (386)
Q Consensus 162 ~~~~---~v~W~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~---~~~~~~~l~v~ 223 (386)
+.++ .++|++||.......... ...++|.+.+...+.-=..+|.+.-.... ..+....-.|.
T Consensus 272 YYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY 351 (490)
T PHA03271 272 FYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVY 351 (490)
T ss_pred ecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccc
Confidence 5433 599999988765433211 12234555444333333789998543322 12333344555
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCee
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQ 265 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~ 265 (386)
.+|.+.+... + -...|.+.--|.- .+.|+-++..
T Consensus 352 ~~P~ISv~Fe------d--G~AVCtA~CVP~gV~lrWlVgD~p 386 (490)
T PHA03271 352 HHPRISLAFK------D--GYAICTIECVPSGITVRWLVHDEP 386 (490)
T ss_pred cCCeEEEEEe------C--CEEEEeccccCCCcEEEEEecCCC
Confidence 6665554322 1 2345777555543 8999877654
|
|
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.9e-06 Score=53.12 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=51.6
Q ss_pred ceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 33 EQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+..+..|++++|+|.....+ ...|+|+..+..... ....+..+|.+.+++..|+|.
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~----------------------~~~~~~ktL~~~qv~~qdSG~ 65 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ----------------------ILNQDKKTLNLVQLGPNDSGT 65 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce----------------------eccCCccEEEeceeCcccCCE
Confidence 44588999999999986543 448999986654210 001123389999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
++|.+..+ .......+.+.|
T Consensus 66 WtC~V~~~-~k~~~~~~~V~V 85 (88)
T cd07694 66 WDCIVSVN-SSEKTLKLDIKV 85 (88)
T ss_pred EEEEEEEC-ceEEEEEeeEEE
Confidence 99999754 233344444444
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.7e-06 Score=60.29 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=49.7
Q ss_pred cccCCCcEEEEEEEEec-CCCeeEEEeCCee---eee-e--c---------CceeEEeeeeecCceeeeEEEEeecccCC
Q psy8823 236 GQALQYDMDLECHVEAY-PPPAIVWIKEDTQ---QVL-T--N---------NQHYSISHFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~---~~~-~--~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 299 (386)
.+.+|+.++|.|.+.+. +...+.|++.... ..+ . . ..++.... ........|+|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR---DSSKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE---eccCCEEEEEECCCCHHH
Confidence 35689999999999876 5668999985431 101 0 0 11111111 111146689999999999
Q ss_pred CeEEEEEEEcCCC
Q psy8823 300 YGSYICRAANKLG 312 (386)
Q Consensus 300 ~G~Y~C~a~n~~g 312 (386)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999998776
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.1e-06 Score=58.83 Aligned_cols=76 Identities=8% Similarity=0.171 Sum_probs=49.0
Q ss_pred cccCCCcEEEEEEEEecCC-C-eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 236 GQALQYDMDLECHVEAYPP-P-AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~-~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
....++.++|.|.+.|..+ . .++|++||.. +...... ......+..+...+.|.+.....++...|+|.+.+...
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~--~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGAT--VSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEE--CcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 3446778999999998543 3 7999999988 3222111 11111123334466677777666677889999998764
Q ss_pred c
Q psy8823 313 T 313 (386)
Q Consensus 313 ~ 313 (386)
.
T Consensus 91 ~ 91 (100)
T cd07699 91 S 91 (100)
T ss_pred C
Confidence 3
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-06 Score=60.22 Aligned_cols=80 Identities=15% Similarity=0.304 Sum_probs=50.0
Q ss_pred CCCcccccCCCcEEEEEEEEecC-CCeeEEEeCCe---eeeee-cCceeEE---eeeeecCceeeeEEEEeecccCCCeE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYP-PPAIVWIKEDT---QQVLT-NNQHYSI---SHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~---~~~~~-~~~~~~~---~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
.+....+.+|++++|.|.+.+.. ...+.|++... ...+. ....... ..+..........|.|.+++.+|+|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 44556778999999999997665 45799997532 11111 1000000 00111111245679999999999999
Q ss_pred EEEEEEcC
Q psy8823 303 YICRAANK 310 (386)
Q Consensus 303 Y~C~a~n~ 310 (386)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99998754
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.3e-06 Score=61.61 Aligned_cols=91 Identities=9% Similarity=0.218 Sum_probs=55.2
Q ss_pred CCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCe---eeeee---cCceeEEeeee--------ecCceeeeEEEEeecc
Q psy8823 232 KPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDT---QQVLT---NNQHYSISHFA--------TADEFTDTTIRVITIE 296 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~---~~~~~---~~~~~~~~~~~--------~~~~~~~~~L~i~~~~ 296 (386)
+....+.+|+++.|.|... ......+.|++... ...+. ........... ........+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4456677899999999998 34445899998433 11111 11011111000 0111235679999999
Q ss_pred cCCCeEEEEEEEcC-CCceeeEEEEEE
Q psy8823 297 KRQYGSYICRAANK-LGTSEKTVELFE 322 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~-~g~~~~~~~l~v 322 (386)
.+|+|.|.|.+... .......+.|.|
T Consensus 88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999987 233344555543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.7e-06 Score=54.99 Aligned_cols=60 Identities=20% Similarity=0.387 Sum_probs=42.5
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCC--------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTG--------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|.|.+.+ +|.+.++|++++..+.... ......+.|.+.....++.+.|+|.+.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999955 5888999999998775321 11122345666666666777999999997655
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.9e-06 Score=61.72 Aligned_cols=90 Identities=16% Similarity=0.284 Sum_probs=59.7
Q ss_pred ccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEE-eeeee-----cCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 235 LGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSI-SHFAT-----ADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
..+.+|++++|.|... +...+.+.|+|....+.......... ..+.+ ......+.|+|++++.+|+|.|.|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 4567899999999974 55566899999754322111111111 11111 11125688999999999999999997
Q ss_pred Ec-CCC-ceeeEEEEEEEe
Q psy8823 308 AN-KLG-TSEKTVELFESI 324 (386)
Q Consensus 308 ~n-~~g-~~~~~~~l~v~~ 324 (386)
.- +.| ..+..+.|.|..
T Consensus 105 ~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EecCCCCCceeEEEEEEEc
Confidence 64 456 778888888874
|
|
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=52.73 Aligned_cols=76 Identities=9% Similarity=0.139 Sum_probs=54.8
Q ss_pred ccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 235 LGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
..+..|++++|+|.....+.| .+.|...+.. .... ......+|.+..++..|+|..+|.+.-...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~--~~~~-----------~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k 75 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNK--SKQI-----------LNQDKKTLNLVQLGPNDSGTWDCIVSVNSS 75 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCc--ccee-----------ccCCccEEEeceeCcccCCEEEEEEEECce
Confidence 356689999999999664454 9999876654 1100 011467899999999999999999986655
Q ss_pred ceeeEEEEEEE
Q psy8823 313 TSEKTVELFES 323 (386)
Q Consensus 313 ~~~~~~~l~v~ 323 (386)
..+..+.+.|.
T Consensus 76 ~~~~~~~V~Vl 86 (88)
T cd07694 76 EKTLKLDIKVL 86 (88)
T ss_pred EEEEEeeEEEE
Confidence 55666666664
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.1e-06 Score=56.38 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=48.0
Q ss_pred ccccCCCcEEEEEEEEec--CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 235 LGQALQYDMDLECHVEAY--PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~--p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.....++.++|.|.+.|. |+. .++|.+++.... ..... ......+..+...+.|.+..-.+++.-.|+|.+.+..
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~-~~~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPV-KASIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEee-eEEec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 345568899999999998 433 789999975421 11111 1111122223345566666655556667999999986
Q ss_pred Ccee
Q psy8823 312 GTSE 315 (386)
Q Consensus 312 g~~~ 315 (386)
....
T Consensus 87 l~~p 90 (96)
T cd07696 87 LPTP 90 (96)
T ss_pred CCCC
Confidence 5443
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.5e-06 Score=58.45 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=48.4
Q ss_pred ecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEE
Q psy8823 37 DIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114 (386)
Q Consensus 37 ~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 114 (386)
..|+.++|.|.+.+. | ...++|++++..+..... ........++.|.. ...|.|.....+|.|.|+|+
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~---~~~~~~~~~gt~~~-------~s~l~v~~~~~~~~~~y~C~ 80 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT---TTPPVPNSDGTYSV-------SSQLTVSPSDWNSGDTYTCV 80 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee---ccccccCCCCCEEE-------EEEEEECHHHhCCCCCEEEE
Confidence 468999999999976 4 467999999876533211 01111112223332 22677877777899999999
Q ss_pred eEEccc
Q psy8823 115 VIIGIN 120 (386)
Q Consensus 115 ~~~~~~ 120 (386)
+.+...
T Consensus 81 v~h~~~ 86 (95)
T cd00098 81 VTHESL 86 (95)
T ss_pred EEeCCC
Confidence 987543
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-05 Score=54.30 Aligned_cols=69 Identities=16% Similarity=0.333 Sum_probs=40.9
Q ss_pred CCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 240 QYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 240 g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
++.++|.|.+.|+ |+. .++|.+++.. ....... ......+..+...+.|.+ ...+...|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~--~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGED--SVDDVESGEILPNGDGTYQLWVTLEV---PPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEE--CcccccccceEECCCCeEEEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence 6789999999996 444 8999999863 1111111 111111111222334444 445789999999987643
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=58.15 Aligned_cols=76 Identities=13% Similarity=0.354 Sum_probs=49.5
Q ss_pred CCcccccCCCcEEEEEEEEe--cCCCeeEEEeCCe---eee-e--ec-----------CceeEEeeeeecCceeeeEEEE
Q psy8823 232 KPRLGQALQYDMDLECHVEA--YPPPAIVWIKEDT---QQV-L--TN-----------NQHYSISHFATADEFTDTTIRV 292 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g--~p~~~~~W~~~~~---~~~-~--~~-----------~~~~~~~~~~~~~~~~~~~L~i 292 (386)
+....+.+|++++|.|.+.+ .+.+.+.|++... +.. + .. ..++... .........|+|
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I 81 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEAR---KDVGKSTSTLTI 81 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEE---EECCCCEEEEEE
Confidence 44566778999999999977 5677899998532 111 1 11 0111110 001113568999
Q ss_pred eecccCCCeEEEEEEEcC
Q psy8823 293 ITIEKRQYGSYICRAANK 310 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~ 310 (386)
.+++.+|+|.|.|.+...
T Consensus 82 ~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 82 QNLEKEDSATYYCAYWES 99 (116)
T ss_pred EECCHHHCEEEEEEEecC
Confidence 999999999999998643
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=54.93 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 239 LQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
..+.++|.|.+.|+.+. .++|.++|.. +.... ...........+...+.|.+..-...+...|+|.+.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~--~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQV--ATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEE--CcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 45669999999985443 7899999987 32211 1111111122233456677776666677889999999876543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=52.69 Aligned_cols=68 Identities=16% Similarity=0.349 Sum_probs=44.4
Q ss_pred EEEEEEEEec-CC-CeeEEEeCCeeeeeecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 243 MDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 243 ~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
++|.|.+.|+ |+ ..+.|++++.. +..... .......+..+...+.|.+.....++...|+|.+.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~--~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQE--VTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEE--CCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 6899999986 44 38999999986 222211 111111233334566777777677788899999988753
|
|
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.1e-06 Score=56.61 Aligned_cols=75 Identities=8% Similarity=0.206 Sum_probs=46.5
Q ss_pred cccCCCcEEEEEEEEec--CCCeeEEEeCCee---eeee--cCce--eEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 236 GQALQYDMDLECHVEAY--PPPAIVWIKEDTQ---QVLT--NNQH--YSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~--p~~~~~W~~~~~~---~~~~--~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
.+.+|++++|.|...+. ....+.|++.... ..+. .... .....+..........|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998765 4557999875432 1111 0000 000011111112456799999999999999999
Q ss_pred EEcC
Q psy8823 307 AANK 310 (386)
Q Consensus 307 a~n~ 310 (386)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.6e-05 Score=53.39 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=48.6
Q ss_pred CcEEEEEEEEecC-CCeeEEEeCCe----eeeeec---CceeE-----EeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 241 YDMDLECHVEAYP-PPAIVWIKEDT----QQVLTN---NQHYS-----ISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 241 ~~~~l~C~~~g~p-~~~~~W~~~~~----~~~~~~---~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
+.++|.|...... ...+.|.|... .+.... +..+. ...+. .....+.+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~-~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFL-NSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEe-cCCCCccEEEEcCCCcccCEEEEEEE
Confidence 3688999985322 23688988542 111110 11110 00011 11124689999999999999999999
Q ss_pred Ec-CCCceeeEEEEE
Q psy8823 308 AN-KLGTSEKTVELF 321 (386)
Q Consensus 308 ~n-~~g~~~~~~~l~ 321 (386)
.. +.|..++.+.|.
T Consensus 80 ~t~P~g~~~~~i~~~ 94 (96)
T cd05889 80 VTYPQGSWEKVIEVV 94 (96)
T ss_pred EeCCCCCeEEEEEEE
Confidence 65 578888877663
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-05 Score=51.97 Aligned_cols=60 Identities=17% Similarity=0.382 Sum_probs=42.8
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|.|.+.+ +|.+.|+|+++|..+..... .....+.|.+.....++...|+|++.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999965 58889999999987654221 1122345666666667778999999997654
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=55.81 Aligned_cols=77 Identities=14% Similarity=0.299 Sum_probs=47.7
Q ss_pred cccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeee----ecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 236 GQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFA----TADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
....+..++|.|.+.|+.+. .++|++++.. +............ +..+...+.|.+..-...+...|+|.+.+
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~--~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H 89 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQP--LSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGH 89 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEE--CCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEe
Confidence 34456789999999996554 6899999987 3322111111111 12233455676755555667789999998
Q ss_pred CCCce
Q psy8823 310 KLGTS 314 (386)
Q Consensus 310 ~~g~~ 314 (386)
.....
T Consensus 90 ~~l~~ 94 (102)
T cd05768 90 EALPL 94 (102)
T ss_pred CCCCc
Confidence 76433
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.9e-05 Score=51.05 Aligned_cols=67 Identities=22% Similarity=0.475 Sum_probs=46.7
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
+.|.|.+.+.+...+.|++++... ...... ..............|.|.++..+|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPL--PSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEEC--CCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 468999988667799999988762 221111 1111222234577899999999999999999988763
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-05 Score=55.62 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=49.5
Q ss_pred EecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCC
Q psy8823 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDR 199 (386)
Q Consensus 131 v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~ 199 (386)
|+++|..............|+.++|.|.+.++.+ ..++|++||..+..... .....+.|.+.....++.
T Consensus 2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~ 81 (111)
T cd05772 2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVH 81 (111)
T ss_pred cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECcccccc
Confidence 3445544433333334557888999999977544 47999999988643211 122244566665433333
Q ss_pred eEEEEEEecCCC
Q psy8823 200 GTYYCVAENGVG 211 (386)
Q Consensus 200 g~y~C~~~~~~~ 211 (386)
..|+|.+.+...
T Consensus 82 ~~ytC~V~H~~l 93 (111)
T cd05772 82 SQVTCEVQHRTL 93 (111)
T ss_pred CceEEEEEeCCC
Confidence 469999998653
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.3e-05 Score=55.62 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=51.1
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCcee--EEeeeeecCceeeeEEEEeecccCC-CeEEEEEEEcCC
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHY--SISHFATADEFTDTTIRVITIEKRQ-YGSYICRAANKL 311 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~ 311 (386)
...++.++|.|.+.|+.+. .++|.+|+.. +...... .........+...+.|.+...+..+ ...|+|.+.+..
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~--l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKE--VTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEE--CCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 3356789999999985444 7899999987 3322211 1111111223346677777666544 567999999997
Q ss_pred CceeeEEE
Q psy8823 312 GTSEKTVE 319 (386)
Q Consensus 312 g~~~~~~~ 319 (386)
........
T Consensus 93 ~~~~~~~~ 100 (115)
T cd05769 93 GTDTDKWQ 100 (115)
T ss_pred Cccceeee
Confidence 76665544
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.1e-05 Score=50.94 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=42.4
Q ss_pred cCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 238 ALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
..|+..+|.|.+.|+.++ .++|.+||.. +............+..+.....| .+.+.+...|+|.+.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~--~~~~~~~~~~p~~d~tyq~~s~l---~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVK--IPKVEQSDLSFSKDWTFYLLKST---EFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEE--CCCcEECcEEECCCCCEEEEEEE---EECCCCCCeEEEEEEECCC
Confidence 346677999999996544 7899999988 33221111222222222222333 3446677789999998653
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.1e-05 Score=51.95 Aligned_cols=71 Identities=17% Similarity=0.325 Sum_probs=46.5
Q ss_pred CCCcEEEEEEEEecCC-C-eeEEEeCCeeeeeecCceeEEee-eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 239 LQYDMDLECHVEAYPP-P-AIVWIKEDTQQVLTNNQHYSISH-FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~-~-~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.++.++|.|.+.|+.+ . .+.|++++.. +.......... ..++.+...+.|.+. ..+...|+|.+.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~--~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKE--VTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE 80 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEE--ETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccce--eeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence 4789999999998544 4 7999999987 44433322221 122333345556665 666678999999886543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=50.36 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=43.5
Q ss_pred cCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 238 ALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
..|+.++|.|.+.|+.++ .++|++++.. +.... ........+..+...+.|.+ ..++...|+|.+.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~--~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQE--ETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSLQE 86 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCee--cCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCCCC
Confidence 357889999999995444 7899999987 33321 11111111112222334443 4456678999999886543
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.6e-05 Score=52.27 Aligned_cols=71 Identities=13% Similarity=0.238 Sum_probs=43.5
Q ss_pred CCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 239 LQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.++.++|.|.+.|+.+. .++|.++|.. .............+..+...+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~--~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS--TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE--CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45679999999996443 7899999986 21111111111112333345666666555445667999999875
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00014 Score=49.65 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=41.8
Q ss_pred CCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 239 LQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.++.++|.|.+.|+ |.. .++|.+||.. +...... ......+..+...+.|.+. +++...|+|.+.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~--~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVP--VTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeE--ccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCCC
Confidence 45668999999995 433 7899999987 4332111 1111122222234455554 3456689999998753
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=2e-05 Score=50.83 Aligned_cols=66 Identities=23% Similarity=0.366 Sum_probs=45.1
Q ss_pred EEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEcc
Q psy8823 42 VELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 42 v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 119 (386)
+.|.|.+.+.+...+.|++++......... ..............|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT------------RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE------------EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999987677789999977554221111 111122233455689999999999999999987543
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-05 Score=55.40 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=45.9
Q ss_pred EEEeCCccEEEEEEeee-eCCCeEEEEEcCeee-----C-------C-CCceEE------eeeEEEECCCCCCCCeEEEE
Q psy8823 145 LVVSEGQPVQLECFAGG-HPTPRISWRRENNAI-----L-------P-TGGSIY------RGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~-----~-------~-~~~~~~------~~~~l~i~~~~~~d~g~y~C 204 (386)
+.+.+|++++|.|.... .....+.|++..... . . ..+... ....|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35788999999998854 345578999864211 0 0 011111 13579999999999999999
Q ss_pred EEecCC
Q psy8823 205 VAENGV 210 (386)
Q Consensus 205 ~~~~~~ 210 (386)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 998754
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-06 Score=78.37 Aligned_cols=185 Identities=21% Similarity=0.295 Sum_probs=111.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCC----cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDY----PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
..|.|...|.+-.+..|.++.|.|.+...+.. .-.|..+............++-. ....+.
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~---------------~~~~si 87 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLG---------------VREVSI 87 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCccccee---------------EEeeee
Confidence 56788888999999999999999998643322 23576654432111111011100 011144
Q ss_pred EEcccCCCCCe---EEEEEeE--EcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEc
Q psy8823 99 LVKDIQETDAG---YYRCQVI--IGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRE 172 (386)
Q Consensus 99 ~i~~~~~~d~G---~Y~C~~~--~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~ 172 (386)
.|.....++.| .|.|+-. ...+...+....+.+.+-.......+....+..+..+.+.|.. .+.|...+.|+++
T Consensus 88 ~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~ 167 (909)
T KOG1480|consen 88 DISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKN 167 (909)
T ss_pred eeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhcccc
Confidence 55555555544 5777643 2222111211112211112222333444567788899999987 6778889999999
Q ss_pred CeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 173 NNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 173 ~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+..+.+..... .....+++..+...|.|+|+|++.|.........+.+.+
T Consensus 168 e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 168 EVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQV 218 (909)
T ss_pred CCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEE
Confidence 98776633322 235679999999999999999999977765555555444
|
|
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.3e-05 Score=51.01 Aligned_cols=60 Identities=20% Similarity=0.354 Sum_probs=43.2
Q ss_pred EEEEEEeee-eCCCeEEEEEcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 153 VQLECFAGG-HPTPRISWRRENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 153 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++|.|.+.| +|...++|+++|..+.... +.....+.|.+.....++...|+|++.|....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999965 6778899999998864322 11223456777766667777999999986544
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.9e-05 Score=51.69 Aligned_cols=73 Identities=10% Similarity=0.117 Sum_probs=46.1
Q ss_pred CcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 241 YDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 241 ~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
....+.|.+ .|+|.+.|+|+++... ..........++.....+.|.+.....+|+-.|+|.+.|+.-.....+
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~-----~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~ 89 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGG-----EAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRF 89 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCC-----cceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 467789998 5789999999987211 111111111112233466788877777777779999999875544433
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0016 Score=49.85 Aligned_cols=138 Identities=13% Similarity=0.208 Sum_probs=74.4
Q ss_pred ccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCcccc-cccccc-CCc-eeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVT-EPLPIS-TGS-SLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
..+..+..|++|.|.|...... -....|+++...... .....+ -+. .....+-+.......+..+++|+|.++..+
T Consensus 31 ~~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~ 110 (251)
T PHA02982 31 TADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQ 110 (251)
T ss_pred hhhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcc
Confidence 3455678899999999965332 345789986533211 000000 000 000011122222223345669999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeC-CccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE-GQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~-g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
..|-|+|++....+....-..-|.|+...... ...+ ...-.+.|-+.+.......|.-+|-.
T Consensus 111 N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 111 NLGCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred cCCceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999985443333323344442221111 1222 33456899886554443489877653
|
|
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.4e-05 Score=52.83 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=47.9
Q ss_pred ccccCCCcEEEEEEEEecC--CC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 235 LGQALQYDMDLECHVEAYP--PP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p--~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.....+..++|.|.+.++. .. .++|.+++... ..........+..+...+.|.+..-.+..+..|+|.+.+..
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~----~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKE----AVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCccC----cEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 3344678899999999854 22 79999998751 11111111223334456777777656666667999999886
Q ss_pred C
Q psy8823 312 G 312 (386)
Q Consensus 312 g 312 (386)
.
T Consensus 90 l 90 (99)
T cd04986 90 G 90 (99)
T ss_pred c
Confidence 5
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.7e-05 Score=54.45 Aligned_cols=77 Identities=16% Similarity=0.373 Sum_probs=49.4
Q ss_pred CCCcccccCCCcEEEEEEEEec-CCCeeEEEeCCee---eee-ec--------CceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQ---QVL-TN--------NQHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~---~~~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
.+....+..|++++|.|..... ....+.|++.... ..+ .. ..++.... ........|+|.+++.
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF---QKAQKSISLTISALQL 81 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE---eccCCEEEEEECCCCH
Confidence 3445667899999999998754 3457999974321 111 10 11111110 0112356899999999
Q ss_pred CCCeEEEEEEEcC
Q psy8823 298 RQYGSYICRAANK 310 (386)
Q Consensus 298 ~d~G~Y~C~a~n~ 310 (386)
+|+|.|.|.+...
T Consensus 82 ~Dsg~Y~C~~~~~ 94 (116)
T cd07706 82 EDSAKYFCALSTL 94 (116)
T ss_pred HHCEEEEEEEECC
Confidence 9999999999853
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.3e-05 Score=53.14 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=52.7
Q ss_pred CCeeeeecccee-eecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 24 TPTISYISQEQI-KDIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 24 ~p~i~~~~~~~~-v~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
+|.+.+.+.... ...++.++|.|.+.+. | ...|+|++++..+... ..........++.|... ..|.+
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~---~~~~~~~~~~dgty~~~-------s~L~v 70 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSG---VQTSTTEQQSDNTYSLS-------SYLTL 70 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECccc---EeccccEECCCCCEEEE-------EEEEE
Confidence 355666554443 4468889999999864 3 5679999998765321 11111111223444432 26767
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
.....++...|+|++.+..
T Consensus 71 ~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 71 TKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cHHHhCCCCeEEEEEEecC
Confidence 6666666789999998753
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.96 E-value=3e-05 Score=54.93 Aligned_cols=63 Identities=32% Similarity=0.508 Sum_probs=43.2
Q ss_pred EEeCCccEEEEEEeeee-CCCeEEEEEcCeee-----------CC-----------CCceEE------eeeEEEECCCCC
Q psy8823 146 VVSEGQPVQLECFAGGH-PTPRISWRRENNAI-----------LP-----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~-----------~~-----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+|++++|.|.+.+. ....+.|++..... .. ...... ....|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47789999999998653 34579999854320 00 001100 123699999999
Q ss_pred CCCeEEEEEEec
Q psy8823 197 EDRGTYYCVAEN 208 (386)
Q Consensus 197 ~d~g~y~C~~~~ 208 (386)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=50.43 Aligned_cols=80 Identities=21% Similarity=0.388 Sum_probs=44.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC-CC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA-QD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+.... |+.++|.|.+.+. |. ..++|++++...... ..........++.|.. ...|.|.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~---~~~~~~~~~~d~ty~~-------~s~l~v~ 68 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDD---VESGEILPNGDGTYQL-------WVTLEVP 68 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECccc---ccccceEECCCCeEEE-------EEEEEEC
Confidence 466666554432 7889999999974 43 479999988522111 0001111111222222 1144443
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
..|.+.|+|++.+..
T Consensus 69 ---~~~~~~ytC~V~H~~ 83 (93)
T cd07698 69 ---PEDKARYSCRVEHSG 83 (93)
T ss_pred ---CCCCCEEEEEEEeCC
Confidence 348899999998754
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=49.56 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=49.1
Q ss_pred CceEEEeCCccEEE-EEEe-eeeCCCeEEEEEcCeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 142 TRSLVVSEGQPVQL-ECFA-GGHPTPRISWRRENNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 142 ~~~~~~~~g~~v~l-~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.....+.+|+.+.+ .|.+ .|.|+++|+|+.+..... ..++...-.+.+.+...+.+|...++|.+.+...
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34556778999888 9987 788999999998743321 1122333455677777666677799999998654
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0001 Score=50.21 Aligned_cols=63 Identities=25% Similarity=0.518 Sum_probs=45.0
Q ss_pred CccEEEEEEe-eeeCCCeEEEEEcCeeeCC---------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 150 GQPVQLECFA-GGHPTPRISWRRENNAILP---------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 150 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+.+.+.|.+ .++|++.++|+.++..+.. ........+.|.+..-..++...++|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 6799999977 6788899999999987711 1112223456777766666777999999987654
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00021 Score=46.79 Aligned_cols=60 Identities=23% Similarity=0.460 Sum_probs=41.6
Q ss_pred cEEEEEEeeee-CC-CeEEEEEcCeeeCCC----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 152 PVQLECFAGGH-PT-PRISWRRENNAILPT----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 152 ~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.++|.|.+.|. |+ ..++|+++|..+... ++.....+.|.+.....++...|+|.+.+...
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 36899999886 43 479999999863321 11222345677777677777899999987543
|
|
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.8e-05 Score=52.71 Aligned_cols=73 Identities=18% Similarity=0.398 Sum_probs=45.0
Q ss_pred ccCCCcEEEEEEEEecCCCeeEEEeCCee-----eeee---cCceeE-------EeeeeecCceeeeEEEEeecccCCCe
Q psy8823 237 QALQYDMDLECHVEAYPPPAIVWIKEDTQ-----QVLT---NNQHYS-------ISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~~~~W~~~~~~-----~~~~---~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+.+|++|+|.|.........+.|++.... ..+. ...... ...+..........|+|++++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 56899999999986554457999975432 1111 100000 00111111124567999999999999
Q ss_pred EEEEEEEc
Q psy8823 302 SYICRAAN 309 (386)
Q Consensus 302 ~Y~C~a~n 309 (386)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99999864
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=49.45 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=47.9
Q ss_pred CcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 241 YDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 241 ~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
....+.|.+. |.|.+.++|+++... .................+.|.+.....+|+..|+|.|.|..-.....+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g-----~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~ 90 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGG-----NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP 90 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCC-----CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 3577899875 688889999987322 1111111111112234667888777777777899999999765555554
Q ss_pred EE
Q psy8823 320 LF 321 (386)
Q Consensus 320 l~ 321 (386)
+.
T Consensus 91 ~~ 92 (95)
T cd07703 91 VT 92 (95)
T ss_pred EE
Confidence 43
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.2e-05 Score=52.47 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=43.4
Q ss_pred eCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCC-------------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 148 SEGQPVQLECFAGGHPTP--RISWRRENNAILPTG-------------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 148 ~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~-------------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+..++|.|.+.|+.+. .++|+++|..+.... ......+.|.+..-...+...|+|.+.+....
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l~ 93 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEALP 93 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCCC
Confidence 346789999999886554 589999998754221 12223445666555445566899999986543
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=52.51 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=47.6
Q ss_pred CCcccccCCCcEEEEEEEEecC------CCeeEEEeCCeee-----ee-ecCceeEEeee----ee--cCceeeeEEEEe
Q psy8823 232 KPRLGQALQYDMDLECHVEAYP------PPAIVWIKEDTQQ-----VL-TNNQHYSISHF----AT--ADEFTDTTIRVI 293 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p------~~~~~W~~~~~~~-----~~-~~~~~~~~~~~----~~--~~~~~~~~L~i~ 293 (386)
+..+.+.+|+.|+|.|...... ...+.|++..... .. ..........+ .- ........|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3445677899999999874322 2358999864321 11 11000000001 00 122346789999
Q ss_pred ecccCCCeEEEEEEEcC
Q psy8823 294 TIEKRQYGSYICRAANK 310 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~ 310 (386)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=48.66 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=40.1
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeE-EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYS-ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
...+..++|.|.+.|+.++ .++|.++|.. +..+.... .....+ .+...+.|.+..-. ....|+|.+.+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~--~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSP--SILGSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEE--CcCCeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 3345679999999995444 7899999987 33221111 111111 22234445444322 2344999999854
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0004 Score=47.48 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=47.3
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+... ...|+.++|.|.+.+. ....++|.+++..+.... .........++.|... ..|.+.
T Consensus 1 ~P~V~v~~~~~-~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~---~~~~~~~~~Dgty~~~-------s~L~v~ 69 (94)
T cd05767 1 PPEVTVFSLKP-VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGV---SETRYYPRQDLSFQKF-------SYLNFT 69 (94)
T ss_pred CCEEEEEeCCc-ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCce---EEeeeEeCCCCcEEEE-------EEEEEE
Confidence 35555544432 3457778999999864 346689999987653211 1111122223344332 255554
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
. ++...|+|++.+..
T Consensus 70 ~---~~~~~ytC~V~H~~ 84 (94)
T cd05767 70 P---EEGDIYSCIVEHWG 84 (94)
T ss_pred C---CCCCeEEEEEEeCC
Confidence 3 45669999998753
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00048 Score=47.23 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=42.3
Q ss_pred eecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 36 KDIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
+..|+.++|.|.+.+. | ...++|++++..+.... .........++.|... ..|.+. ..+...|+|
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~---~~~~~~~~~dgTy~~~-------s~L~~~---~~~~~~ysC 77 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGV---VSTELIPNGDWTYQIL-------VMLETT---PSRGDTYTC 77 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCc---eecceEECCCCcEEEE-------EEEEEc---CCCCCEEEE
Confidence 3468999999999864 3 34689999998754321 1111111122233332 144443 346679999
Q ss_pred EeEEcc
Q psy8823 114 QVIIGI 119 (386)
Q Consensus 114 ~~~~~~ 119 (386)
++.+..
T Consensus 78 ~V~H~~ 83 (94)
T cd05766 78 VVEHSS 83 (94)
T ss_pred EEEeCC
Confidence 998754
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00018 Score=44.57 Aligned_cols=61 Identities=23% Similarity=0.551 Sum_probs=43.0
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
..+.|.|.|.+ ...|.|++ |..+.... ..+|.+.....+-.|.|.|.+.+ .+....|.|+|
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~s~-----~~~~~~LQVyY 65 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKESE-----PNKEKTLQVYY 65 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecCcc-----CCCcEEEEEEE
Confidence 35579999965 24599999 65554322 56789999999999999999876 12334555554
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00023 Score=50.54 Aligned_cols=66 Identities=18% Similarity=0.338 Sum_probs=45.0
Q ss_pred EeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCC-----------ceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 147 VSEGQPVQLECFAGGHPTP--RISWRRENNAILPTG-----------GSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+.+++.++|.|.+.++.+. .++|++|+..+.... ......+.|.+......+ ...|+|.+.+....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 3356779999999886443 799999997754321 122234567777666545 45999999986554
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00088 Score=45.61 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=46.6
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
|.+.+.... .+..|+..+|.|.+.+. +...++|.++|..+. . ......+...+..|.... .|.+
T Consensus 2 P~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~---~~~~~~~p~~d~tyq~~s-------~l~~-- 67 (93)
T cd05770 2 PKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-K---VEQSDLSFSKDWTFYLLK-------STEF-- 67 (93)
T ss_pred CEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-C---cEECcEEECCCCCEEEEE-------EEEE--
Confidence 455553322 23457778999999864 455689999997653 1 111122222333443321 4444
Q ss_pred cCCCCCeEEEEEeEEcc
Q psy8823 103 IQETDAGYYRCQVIIGI 119 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~ 119 (386)
...+...|+|++.+..
T Consensus 68 -~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 68 -TPTKGDEYACRVRHNS 83 (93)
T ss_pred -CCCCCCeEEEEEEECC
Confidence 4567779999998753
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=49.25 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=52.5
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccc--ccccCCceeEEe---ccceeeecCCCcceEEEEEcccCCCC
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP--LPISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
..+...|+++.|.=.........++|.+.-....... +....+...... ..++.+. ..+.+|.|+.++..|
T Consensus 7 ~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~----~enlaLlIkaAq~qD 82 (108)
T PF11465_consen 7 HVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFT----SENLALLIKAAQPQD 82 (108)
T ss_dssp EEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEE----TTTTEEEESS-SGGG
T ss_pred ceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeee----ccCceEEEeecCccc
Confidence 4456788888887222112234478877553222211 111222211111 2344443 345599999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+|.|.-++.+..+......+.+.|.
T Consensus 83 SG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 83 SGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp -EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CceEEEEEEcCCCcEEEEEEEEEee
Confidence 9999999998877766777777664
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0003 Score=48.16 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=43.4
Q ss_pred CCccEEEEEEeeeeCC--CeEEEEEcCeeeCCC----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 149 EGQPVQLECFAGGHPT--PRISWRRENNAILPT----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.++.++|.|.+.|+.+ ..++|.++|..+... +......+.|.+......+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 4566899999988644 479999999875221 112223456667765555677999999986543
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00025 Score=48.71 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=43.2
Q ss_pred EeCCccEEEEEEeeee-CC--CeEEEEEcCeeeCC---------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 147 VSEGQPVQLECFAGGH-PT--PRISWRRENNAILP---------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~-~~--~~v~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
+..|+.++|.|.+.|. .+ ..++|.++++.... .++.....+.|.+......+.-.|+|.+.+...
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 4558899999999888 33 36899998754321 122223345566666555455689999998654
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=51.13 Aligned_cols=67 Identities=28% Similarity=0.549 Sum_probs=45.1
Q ss_pred CceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCee-----e---CC----------CCceE-E------eeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--TPRISWRRENNA-----I---LP----------TGGSI-Y------RGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~-----~---~~----------~~~~~-~------~~~~l~i~~~ 194 (386)
+....+.+|++++|.|...+.. ...+.||+.... + .. ..... . ....|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4556788999999999875432 456999984321 0 00 00111 1 1236999999
Q ss_pred CCCCCeEEEEEEec
Q psy8823 195 TKEDRGTYYCVAEN 208 (386)
Q Consensus 195 ~~~d~g~y~C~~~~ 208 (386)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999999865
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=45.36 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=41.3
Q ss_pred ccEEEEEEe-eeeCCCeEEEEEcCeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 151 QPVQLECFA-GGHPTPRISWRRENNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 151 ~~v~l~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
....+.|.+ .|.|.+.|+|+++..... ..++.....+.|.+.....+|...|+|++.|....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~ 84 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQ 84 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 347899987 688999999998732211 11112223456777666666667999999996543
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00084 Score=46.02 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=45.3
Q ss_pred CccEEEEEEe-eeeCCCeEEEEEcCeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEE
Q psy8823 150 GQPVQLECFA-GGHPTPRISWRRENNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVE 221 (386)
Q Consensus 150 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~ 221 (386)
.....+.|.+ .|.|.++|+|+++..... ...+.....+.|.+.....+|...|+|++.|.... .....+.|.
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~ 94 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN 94 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence 3457899998 789999999999721111 11112233456777666666666999999986643 233344443
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.046 Score=46.65 Aligned_cols=161 Identities=17% Similarity=0.273 Sum_probs=85.3
Q ss_pred eEEEeCCccEEEEEEee--ee-CCCeEEEEEcCeeeCCC-----------------CceE----------EeeeEEEECC
Q psy8823 144 SLVVSEGQPVQLECFAG--GH-PTPRISWRRENNAILPT-----------------GGSI----------YRGSILKIPQ 193 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~--~~-~~~~v~W~~~~~~~~~~-----------------~~~~----------~~~~~l~i~~ 193 (386)
.+.+..|..|.|.|... |+ .-....|+..+-++.+. .... ...++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 44566689999999874 22 23468898655332210 0011 1246899999
Q ss_pred CCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCC-CcEEEEEEEEec-C-CCeeEEEeCCeeeeeec
Q psy8823 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAY-P-PPAIVWIKEDTQQVLTN 270 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g-~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~ 270 (386)
+..+.+|-|.|++..+... ......+.|...-.+. ...+| ..-...|-+-.. - ++.+.|.-+|-. ...
T Consensus 353 a~I~N~GCY~~~a~~g~~~-~ec~~Cl~V~d~V~f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~--~~G 423 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFK-EECRHCFKVADHVFFK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGVS--FGG 423 (500)
T ss_pred EEEEcCCceEEEEecCcch-hhhhhheEeccEEEEE------EEeccCceEEEEEEEEecccCCceeEEEEccEE--ecC
Confidence 9999999999999876443 2222233332111111 11122 234467887554 3 447999988865 221
Q ss_pred CceeEEe--eeeecCceeeeEEEEeecccCC-CeEEEEEEEcCCCc
Q psy8823 271 NQHYSIS--HFATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGT 313 (386)
Q Consensus 271 ~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~ 313 (386)
...-.+. ............+.|.+-...| --.-.|...-..|.
T Consensus 424 ~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 424 EIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred eecCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 1111111 1111122234556666655555 34466776555443
|
|
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=45.25 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=40.2
Q ss_pred EeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 147 VSEGQPVQLECFAGGHPTP--RISWRRENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
+..++.++|.|.+.+..+. .++|.++|..+... +......+.|.+..-. ....|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g~ 86 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEGI 86 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECCC
Confidence 3346779999999886443 68999999875322 1122234456555442 23469999998543
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00066 Score=45.15 Aligned_cols=66 Identities=14% Similarity=0.413 Sum_probs=38.4
Q ss_pred cEEEEEEEEecCCC--eeEEEeCCee---eeee-c---CceeEE----eee--eecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 242 DMDLECHVEAYPPP--AIVWIKEDTQ---QVLT-N---NQHYSI----SHF--ATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 242 ~~~l~C~~~g~p~~--~~~W~~~~~~---~~~~-~---~~~~~~----~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
++.|.|.+.....+ .+.|++.... ..+. . ...+.. ..+ ..........|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998765543 7899885521 1111 0 001000 000 011113457899999999999999996
Q ss_pred E
Q psy8823 307 A 307 (386)
Q Consensus 307 a 307 (386)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
|
|
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0002 Score=51.20 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=48.2
Q ss_pred eecCCcEEEEEEEeeC-----CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 36 KDIGGTVELKCSVQYA-----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
..-++.|.|+|.+..- +...|.|..++..+-. .............++..+ .+...++++|.+.....- .|.
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~--~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~Gn 99 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFI--FDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGN 99 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEE--EETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEE--EcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccc
Confidence 4568999999998741 2334999998864311 000111111111223344 566678889999986655 899
Q ss_pred EEEEeEEcccceeeeEEEEEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|+|++.... .+....+.|..
T Consensus 100 YTCeVt~~~-~ege~~i~Lk~ 119 (130)
T PF08204_consen 100 YTCEVTELS-REGETTIELKY 119 (130)
T ss_dssp EEEEEEETT-EEEEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEEEE
Confidence 999998543 34455555554
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00048 Score=49.35 Aligned_cols=85 Identities=12% Similarity=0.184 Sum_probs=51.3
Q ss_pred cCCCcEEEEEEEEecC-----CCeeEEEeCCeeeeeecCceeEEee------eeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 238 ALQYDMDLECHVEAYP-----PPAIVWIKEDTQQVLTNNQHYSISH------FATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p-----~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
.-.++|.|+|.+.... ...+.|.+++..+...++....... .......+..+|.+...+.- .|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 3467899999986421 2258999999886555444332210 00111234566888876655 7999999
Q ss_pred EEcCCCceeeEEEEEEE
Q psy8823 307 AANKLGTSEKTVELFES 323 (386)
Q Consensus 307 a~n~~g~~~~~~~l~v~ 323 (386)
+.......+..+.|..+
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99999888888888764
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0017 Score=44.34 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=49.4
Q ss_pred cccccCCCcEEE-EEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 234 RLGQALQYDMDL-ECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 234 ~~~~~~g~~~~l-~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
...+.+|+.+.+ .|.+ .|.|++.++|+.+.... . ........++.....+.|.+.....+|+-.++|.+.++.
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~--~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGT--S---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCc--c---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 344567888888 8986 57888899999774331 1 111111122233356677787777778778999999986
Q ss_pred Cce
Q psy8823 312 GTS 314 (386)
Q Consensus 312 g~~ 314 (386)
-..
T Consensus 85 l~~ 87 (97)
T cd07704 85 LQQ 87 (97)
T ss_pred cCC
Confidence 543
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0017 Score=43.48 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=42.3
Q ss_pred CCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCc----------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 149 EGQPVQLECFAGGHPTP--RISWRRENNAILPTGG----------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.++.++|.|.+.++.+. .++|++++..+..... .....+.|.+. ..+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 48899999999886443 6999999987653321 22223456666 55566999999986554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.002 Score=44.17 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=40.8
Q ss_pred cCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 38 IGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 38 ~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
.++.++|.|.+.+. ....|+|++++.. .... .. .......++.|... ..|.+..........|+|++
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~--~~-~~~~~~~dgty~~~-------s~L~v~~~~w~~~~~ytC~V 83 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGV--KT-YPAVLQSGGLYTAS-------SQLTVPASEWKGKESFYCKV 83 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCc--EE-CCCEeCCCCCEEEE-------EEEEEeHHHcCCCCcEEEEE
Confidence 56779999999864 3456899999875 2111 00 11111113344332 25665554333356899999
Q ss_pred EEcc
Q psy8823 116 IIGI 119 (386)
Q Consensus 116 ~~~~ 119 (386)
.+..
T Consensus 84 ~H~~ 87 (95)
T cd04985 84 EHPS 87 (95)
T ss_pred EeCC
Confidence 8753
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00078 Score=46.22 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=42.3
Q ss_pred EeCCccEEEEEEeeeeC---CCeEEEEEcCeeeC-------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 147 VSEGQPVQLECFAGGHP---TPRISWRRENNAIL-------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
...+..++|.|.+.+.. ...++|.++|..-. ..+......+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 33578899999998854 34799999986411 1111222345677665544555589999998654
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.38 Score=52.14 Aligned_cols=274 Identities=9% Similarity=0.086 Sum_probs=155.1
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+...+..+..|++|+|.-.........+.|..++.... ...++.+ .-+..
T Consensus 1700 L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~------------~~s~p~~----------------tHtf~ 1751 (2740)
T TIGR00864 1700 LMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDL------------ETSEPFM----------------SHSFP 1751 (2740)
T ss_pred eEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCc------------ccCCCce----------------EEEcc
Confidence 3344444556789999988776666777899988664210 0011111 01234
Q ss_pred CCeEEEEEeE--EcccceeeeEEEEEEecCCe---eecCCC-ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC
Q psy8823 107 DAGYYRCQVI--IGINNKISAEVDLQVRRPPV---ISDNST-RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 107 d~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p~---~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~ 180 (386)
..|.|.-.+. |..+. ....+.+.|.++.. +....+ ....+..|..+.+.=.+.......+.|..++..-...
T Consensus 1752 ~~G~y~VtVta~N~vss-~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~g- 1829 (2740)
T TIGR00864 1752 SAGLHLVTMKAFNELGS-ANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMG- 1829 (2740)
T ss_pred CCceEEEEEEEEccccc-cceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcccc-
Confidence 5788887654 33332 24456666665532 211111 1113556777777666532233468888765431111
Q ss_pred ceEEeeeEEEECCCCCCCCeEEEEEE--ecCCCCceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYYCVA--ENGVGKGTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~C~~--~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
.. . ..+..+.|.|+-.+ .|..+. ...+..+.|+.++. +........+..|+.++|.+.+...+..++
T Consensus 1830 ----k~--v---~~Tf~~aG~ytV~L~AsN~vs~-~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf 1899 (2740)
T TIGR00864 1830 ----KH--A---CMTFPDAGTFAIRLNASNAVSG-KSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNF 1899 (2740)
T ss_pred ----ce--e---EEecCCCeEEEEEEEEEcccCc-ceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEE
Confidence 01 1 13456789887654 677665 45666777877663 444444556778999999999887777899
Q ss_pred EEEeCCeeeeee-cCceeEEeeeeecCceeeeEEEEeecccCCCeE--EEEEEEcCCCceeeEEEEEEEecCCCCC--CC
Q psy8823 258 VWIKEDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIEKRQYGS--YICRAANKLGTSEKTVELFESIIPVCPP--QT 332 (386)
Q Consensus 258 ~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~--Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--~~ 332 (386)
.|...+....+. ....+.. ....-|. .+-.|.|..+...+.+.+.|..+-.--. ..
T Consensus 1900 ~w~fGdgs~~~~t~~~t~~H-------------------sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~ 1960 (2740)
T TIGR00864 1900 RLQIGGAAPEVLQPGPRFSH-------------------SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDC 1960 (2740)
T ss_pred EEEeCCCCceeecCCCeEEe-------------------ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCC
Confidence 998775442221 2211110 0111244 4467889999988888877754321110 11
Q ss_pred CCceeecCcceeeeEEe-cCCCC--Ccccc
Q psy8823 333 QPSELLPLRNVNMAVIF-AEQPT--SWEPQ 359 (386)
Q Consensus 333 ~~~~~~~~~~~~~~c~~-~~~p~--~W~~~ 359 (386)
.......|...+|.... .|.|+ .|+.+
T Consensus 1961 c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~ 1990 (2740)
T TIGR00864 1961 CAAGIATGEEKNFTANVQRGKPVAFAWTFD 1990 (2740)
T ss_pred cccceecCceEEEEEEEecCCceEEEEEee
Confidence 11125677788888876 66664 68744
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00067 Score=41.82 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=35.0
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEec
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.|.+|+|+|...+. .+.|.+++..+... +..+.+.+-. ++.|.|.|.+.+
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCC
Confidence 58999999975422 39999998555432 2234444555 889999999964
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.001 Score=41.30 Aligned_cols=49 Identities=18% Similarity=0.418 Sum_probs=35.4
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
...|.|.|.+ .-+|.|++ |.. +... ...+|.|.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~--~~~~--------------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKE--ILEV--------------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Ccc--cccc--------------cccEEeccCcccCCCcceEecCcc
Confidence 3579999965 24699999 444 1110 145677888888999999999977
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00076 Score=41.58 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=34.0
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.|.+|+|+|...+. .+.|.+++.. +... +..+.+.+-. ++.|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~--~~g~---------------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQV--SQGS---------------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCcc--CCCC---------------CceEEeeccC-CCCceEEEEeCCC
Confidence 47899999975422 3999999855 2221 2234444445 8899999999643
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0017 Score=39.22 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=34.9
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
...|.|.++..+|+|.|.|...|..-..+.++.|.|...+
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 5568899999999999999999998888889999887554
|
|
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.064 Score=46.12 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=70.9
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEe-cceEeeCCCcccccCCCcEEEEEEEEecCCC---eeEEE
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEF-APVITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWI 260 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~ 260 (386)
...+.|.++...++|.|+-...+..... ..+.+.+.+.+ +|.+.+.+ ..+..|+...-.|.+..+.+| .++|+
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf 283 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWR 283 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEE
Confidence 4578999999999996655555433332 23344555544 44444433 345689999999999876655 68999
Q ss_pred eCCeeeeeecCceeEE-eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 261 KEDTQQVLTNNQHYSI-SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 261 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.||....-........ -..........++|++.+...+.--..+|.+.=..+
T Consensus 284 ~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 284 QNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred eCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 9998732222111111 000111112234444444333344479999875444
|
|
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.034 Score=48.06 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=76.9
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC---eeEEEe
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWIK 261 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~ 261 (386)
...|.|..++...+|.|+-...+..+. .....+++..+.+|.+.+.+. .+.+|+...-.|.+..+.++ .+.|+.
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 456999999999999999997765543 234557777777887665433 46689999999999776555 689999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC-CCeEEEEEEEcC
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR-QYGSYICRAANK 310 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~ 310 (386)
|+..+......+.......+ .....++|++.....+ .--+.+|.+.=.
T Consensus 259 ng~~V~~~~~i~~~~~~~~d-Gfs~vStvtsea~~~~~~PPsLrC~v~W~ 307 (466)
T PHA03270 259 GGDEVFAPERVRTRVDAQRD-GFSATSTLTSEARAGLAPPRNLTCEFTWH 307 (466)
T ss_pred CCccccCcceeeeeeEecCC-CeeEEEEEeccccccCCCCCCceEEEEEc
Confidence 99883222222222111111 1223444544443221 223689998643
|
|
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.002 Score=38.89 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=28.0
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
.|+|.++..+|+|.|.|.+.+.. -.....+.|.|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t-~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNET-YSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCC-eeEEEEEEEEEeec
Confidence 79999999999999999998543 33345566766543
|
|
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.76 Score=50.06 Aligned_cols=234 Identities=16% Similarity=0.154 Sum_probs=128.5
Q ss_pred cCCCCCeEEEEEeE--EcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC
Q psy8823 103 IQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~--~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~ 180 (386)
.+..+.|.|+-.+. |.. +..+....+.|+.+..-.........+..|+.++|.+.+.......+.|..++.......
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~v-s~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t 1912 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAV-SGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ 1912 (2740)
T ss_pred EecCCCeEEEEEEEEEccc-CcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec
Confidence 35678899988654 443 333456667777665332222333456789999999988666677899987654321110
Q ss_pred ceEEeeeEEEECCCCCCCCeEEE--EEEecCCCCceeeeEEEEEEecce-EeeCCC-cccccCCCcEEEEEEEEecCCCe
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYY--CVAENGVGKGTRRNIAVEVEFAPV-ITVPKP-RLGQALQYDMDLECHVEAYPPPA 256 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~--C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~ 256 (386)
.+.+ ..+.- ..-|.|. -.+.|..+. ....+.+.|..+-. +.+... ......|+..++.-.+....+..
T Consensus 1913 ----~~~t-~~HsY--~~~G~Y~VtV~A~N~Vs~-~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~ 1984 (2740)
T TIGR00864 1913 ----PGPR-FSHSF--PRVDDHMVNLRAKNEVSC-AQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVA 1984 (2740)
T ss_pred ----CCCe-EEeec--CCCCcEEEEEEEEeccce-eeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceE
Confidence 0111 11111 2234454 455676665 44555666655422 222222 11257789999999987666678
Q ss_pred eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE--EEEEcCCCceeeEEEEEEEecCCCCC-CCC
Q psy8823 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI--CRAANKLGTSEKTVELFESIIPVCPP-QTQ 333 (386)
Q Consensus 257 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~--C~a~n~~g~~~~~~~l~v~~~p~~~~-~~~ 333 (386)
+.|++.... +.....+... ..+-+.. ....|.|. -.|.|..|.......+.|..+..... ...
T Consensus 1985 f~W~f~~~~--~~g~~~~~~~-------G~~vty~-----~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~ 2050 (2740)
T TIGR00864 1985 FAWTFDLHH--LHGDSLVIHM-------GKDVSYT-----AEAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAG 2050 (2740)
T ss_pred EEEEeeecc--cCCCcceeec-------CCceEEc-----cCCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeec
Confidence 999866332 1111111000 0011111 13467766 56788888877666666654432111 112
Q ss_pred CceeecCcceeeeEEecCCC----CCcccc
Q psy8823 334 PSELLPLRNVNMAVIFAEQP----TSWEPQ 359 (386)
Q Consensus 334 ~~~~~~~~~~~~~c~~~~~p----~~W~~~ 359 (386)
+.....+..++|.|.....+ ..|..+
T Consensus 2051 p~~~~~n~~v~f~~~~~~~~~~v~~~WDFG 2080 (2740)
T TIGR00864 2051 PQDCFTNKMAQFEAATSPKPNFMACHWDFG 2080 (2740)
T ss_pred CcceecCceEEEEEEEccCCCcEEEEEEec
Confidence 34556677888888875544 367754
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00022 Score=65.21 Aligned_cols=165 Identities=18% Similarity=0.328 Sum_probs=96.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCC----CeEEEEEcCeeeCCC--C---ceEEeeeEEEECCCCCCCCe---EEEEE--Ee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPT----PRISWRRENNAILPT--G---GSIYRGSILKIPQITKEDRG---TYYCV--AE 207 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~--~---~~~~~~~~l~i~~~~~~d~g---~y~C~--~~ 207 (386)
++...+..|.++.|.|.+...+. +.-.|..+....... + ......-...|.....++.+ .|+|+ +.
T Consensus 31 p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~cQc~a~ 110 (909)
T KOG1480|consen 31 PKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYWCQCVAW 110 (909)
T ss_pred CCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccceeeeeeee
Confidence 34445667999999998854432 234565544332111 1 11112223444444444333 46654 55
Q ss_pred cCCCCceeeeEEEEEEecc-eEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCce
Q psy8823 208 NGVGKGTRRNIAVEVEFAP-VITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEF 285 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (386)
...+...++...+.+.|-- .+...+.-..+..+..+.+.|.. .+.|...+.|++++.. +....+... .
T Consensus 111 ~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~--~~pd~n~~~--------~ 180 (909)
T KOG1480|consen 111 SDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVV--IDPDANVIR--------A 180 (909)
T ss_pred cCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCC--CCccccchh--------h
Confidence 5555322222222222211 12233444566777888899885 5778889999999887 333322221 2
Q ss_pred eeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
....+.+..+...|.|+|+|+|.|-.+..+.
T Consensus 181 ~d~~li~~~arlsd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 181 SDHNLIISQARLSDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred hcCCccccchhhhhcccceeeeehhhccccc
Confidence 4567889999999999999999999886653
|
|
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.04 Score=48.10 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=77.9
Q ss_pred eEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC---eeEEEeC
Q psy8823 187 SILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWIKE 262 (386)
Q Consensus 187 ~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~~ 262 (386)
..|.|..++...+|.|+-...+..+. .....+++....+|.+.+.+ ..+.+|+...-.|.+..+.++ .+.|+.|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 45999999999999999776554332 13345666667777766543 346789999999999776555 6899999
Q ss_pred CeeeeeecCceeEEeeeeecCceeeeEEEEeeccc-CCCeEEEEEEEcCC
Q psy8823 263 DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK-RQYGSYICRAANKL 311 (386)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~ 311 (386)
+.++...............+.....++|++..... +.--..+|.+.=..
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~r 325 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYR 325 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEcc
Confidence 99833112112111112222334456666665433 34456999986443
|
|
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.042 Score=48.18 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=74.7
Q ss_pred eEEEECCCCCCCCeEEEEEEecCCC--CceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC---eeEEEe
Q psy8823 187 SILKIPQITKEDRGTYYCVAENGVG--KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWIK 261 (386)
Q Consensus 187 ~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~ 261 (386)
..|.|.+++..++|.|+-.+.+... ......+++.+...|.+.+. ...+.+|+...-.|.+..+.++ .++|+.
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 4699999999999999877654332 22346677777778865554 3356789999999999876555 689999
Q ss_pred CCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCC--CeEEEEEEEcC
Q psy8823 262 EDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQ--YGSYICRAANK 310 (386)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d--~G~Y~C~a~n~ 310 (386)
|+.+ +.... .........+.....++|++......| --..+|.+.=.
T Consensus 367 ng~~--V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~ 416 (566)
T PHA03269 367 NFGN--IGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWI 416 (566)
T ss_pred CCcc--cCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEc
Confidence 9887 33211 111111222223344555553322222 34579998644
|
|
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0091 Score=40.53 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=42.0
Q ss_pred ccCCCcEEEEEEEEe-cCC--CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 237 QALQYDMDLECHVEA-YPP--PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g-~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
..+|..+++.|.+.+ +|. .++.|+++... +...... -.............+++.....+|+-+|+|.|.-..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~--l~~~~f~-~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETL--LPSKSFL-EDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcce--ecccccc-cccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 468999999999975 444 37999986654 3222111 0000001112345566666554554579999975544
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0089 Score=40.57 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=40.9
Q ss_pred EeCCccEEEEEEeee-eCC--CeEEEEEcCeeeCCCCc--------eEEeeeEEEECCCCCCCCe-EEEEEEecCCC
Q psy8823 147 VSEGQPVQLECFAGG-HPT--PRISWRRENNAILPTGG--------SIYRGSILKIPQITKEDRG-TYYCVAENGVG 211 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~ 211 (386)
+.+|..+++.|.+.+ .|. ..+.|+++...+..... .......+++... ++|.| .|.|.|.-...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence 568999999999964 443 46999986654432211 1112345566554 66666 99999976443
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.019 Score=46.32 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=48.4
Q ss_pred CCCcEEEEEEEEec-----CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 239 LQYDMDLECHVEAY-----PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
-.+++.++|.++.- ..-.+.|.+++..+...++.+ .++|.+...+ .-.|+|+|+|.+...+
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-------------~aSL~~~f~~-~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-------------TSSLKFNFSK-NLSGNYTCEAINKFNK 95 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-------------ceEEEEeccc-cCCCceeEEEeecccC
Confidence 35789999998542 234699999998855444431 3456654443 3469999999998777
Q ss_pred eeeEEEEEEE
Q psy8823 314 SEKTVELFES 323 (386)
Q Consensus 314 ~~~~~~l~v~ 323 (386)
.+..+.|+-+
T Consensus 96 gk~~IeLk~~ 105 (286)
T PHA03042 96 IKNTIELQYV 105 (286)
T ss_pred ccEEEEEEEE
Confidence 7777666554
|
|
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.016 Score=40.75 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=43.9
Q ss_pred ceEEEeCCccEEEEEEeeeeC--C-CeEEEEEcCeee--------------CCCCceE-------EeeeEEEECCCCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--T-PRISWRRENNAI--------------LPTGGSI-------YRGSILKIPQITKED 198 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~-~~v~W~~~~~~~--------------~~~~~~~-------~~~~~l~i~~~~~~d 198 (386)
....+..|+.++|.|.+.|.. . ..+.|.|..... ....... .+.-.|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 345677899999999996643 2 468898843221 0001110 113479999999999
Q ss_pred CeEEEEEEec
Q psy8823 199 RGTYYCVAEN 208 (386)
Q Consensus 199 ~g~y~C~~~~ 208 (386)
++.|.|..+.
T Consensus 86 Ta~Y~Ca~e~ 95 (115)
T cd05721 86 TDIYFCKIEL 95 (115)
T ss_pred CeEEEEEeee
Confidence 9999998753
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.47 Score=40.84 Aligned_cols=170 Identities=17% Similarity=0.244 Sum_probs=91.5
Q ss_pred eeecCCcEEEEEEEee--C-CCCcEEEEecCCccccccccccCCce---eEEeccceeeecC----CCcceEEEEEcccC
Q psy8823 35 IKDIGGTVELKCSVQY--A-QDYPVIWMKVDRNKVTEPLPISTGSS---LIIRDSRFAIRYD----TASSTYTLLVKDIQ 104 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~--~-~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~L~i~~~~ 104 (386)
.+..|..|.|.|.++- + .-....|+.-+-+..+.......... ....+..|.+... .+..+.+|+|.+++
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 3667999999999873 3 23458999877665322111111110 0112333433332 34456699999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeC-CccEEEEEEeeee--CCCeEEEEEcCeeeCCCCc
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE-GQPVQLECFAGGH--PTPRISWRRENNAILPTGG 181 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~-g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~ 181 (386)
.+.+|-|+|++... ........-|.|...-.+.. ..+ ...-.+.|.+... .++.+.|.-+|-.......
T Consensus 355 I~N~GCY~~~a~~g-~~~~ec~~Cl~V~d~V~f~W-------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~ 426 (500)
T PHA02914 355 INNAGCYEAQAFMG-KFKEECRHCFKVADHVFFKW-------NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIA 426 (500)
T ss_pred EEcCCceEEEEecC-cchhhhhhheEeccEEEEEE-------EeccCceEEEEEEEEecccCCceeEEEEccEEecCeec
Confidence 99999999998743 22222222233322111111 113 3345678988443 4567999987754322110
Q ss_pred --------eEE---eeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 182 --------SIY---RGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 182 --------~~~---~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
... ....+.|.+-...| --.-.|...-..+.
T Consensus 427 ~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 427 DALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred CcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 000 12356666665555 33556776654443
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.012 Score=51.27 Aligned_cols=87 Identities=13% Similarity=0.026 Sum_probs=63.3
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeC---CeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKE---DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
...+..+++..++|-+.|.+.+.|+|.+- ...........+ .+........|.|-+....|+|.|+|.+.|.
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~-----e~p~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTV-----ENPVVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred hhhcccchhhcccccccCCcCceeeeehhhccccceeecCcccc-----CCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence 34466788999999999999999999753 222112211111 1111235678999999999999999999999
Q ss_pred CCceeeEEEEEEEec
Q psy8823 311 LGTSEKTVELFESII 325 (386)
Q Consensus 311 ~g~~~~~~~l~v~~~ 325 (386)
.|-..+++.+.+...
T Consensus 280 ~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 280 AGFLRRDVPCSSVKG 294 (560)
T ss_pred cceeeccceeeeecc
Confidence 999999988877644
|
|
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.03 Score=55.16 Aligned_cols=209 Identities=10% Similarity=-0.042 Sum_probs=122.6
Q ss_pred EeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE---
Q psy8823 147 VSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE--- 223 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~--- 223 (386)
...++...+.|.+.+.+.+.+.|+.+....... ...+....+.+....+.+.|+|...+..+.... .+...+.
T Consensus 241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~---~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~-~v~~~~~i~~ 316 (1205)
T KOG0613|consen 241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK---HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRF-KVTEEAPIGK 316 (1205)
T ss_pred ccchhheeeeEEeecCCCchHHHHhcchhhhcc---cCCCccccccccCCccccceeeecccCCcccce-eeeEEeeccc
Confidence 445667788888877777777777654433222 122345666677777778888888776655221 1111111
Q ss_pred --e-----------cceEe---eCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 224 --F-----------APVIT---VPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 224 --~-----------~p~~~---~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
+ +|... ..........+..+++.|...+.+.| .+.|++++.......+....+ .....
T Consensus 317 ~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~t 391 (1205)
T KOG0613|consen 317 GKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCP-----VGTVT 391 (1205)
T ss_pred cccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccc-----ccccc
Confidence 1 11111 11123344456789999999999888 499998876622222221111 11124
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC-CCCC------CCCceeecCcceeeeEEecCCC--C---
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV-CPPQ------TQPSELLPLRNVNMAVIFAEQP--T--- 354 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~-~~~~------~~~~~~~~~~~~~~~c~~~~~p--~--- 354 (386)
...+.+..+...+.+.|.|.|.|..|.........+...+. .++. .........+.++..|...+.+ +
T Consensus 392 s~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~ 471 (1205)
T KOG0613|consen 392 SHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTV 471 (1205)
T ss_pred CcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeE
Confidence 55678889999999999999999999887655555544332 1111 1222333345777788777776 4
Q ss_pred Ccccccceee
Q psy8823 355 SWEPQRKQLN 364 (386)
Q Consensus 355 ~W~~~~~~l~ 364 (386)
+|.+++....
T Consensus 472 tt~~~~~~~s 481 (1205)
T KOG0613|consen 472 TTIKDGLPLS 481 (1205)
T ss_pred eeccCCcccc
Confidence 5666655543
|
|
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.98 Score=35.71 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=51.9
Q ss_pred eEEEEEcCeeeCCCCc----------eEEeeeEEEE-CCCCCCCCeEEEEEEecCCCCce----eeeEEEEEEecceEee
Q psy8823 166 RISWRRENNAILPTGG----------SIYRGSILKI-PQITKEDRGTYYCVAENGVGKGT----RRNIAVEVEFAPVITV 230 (386)
Q Consensus 166 ~v~W~~~~~~~~~~~~----------~~~~~~~l~i-~~~~~~d~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~ 230 (386)
.++|+.|+..+..... .....++|.+ .+...+..-..+|++.-...... +....-.|..+|.+.+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 5889988876543211 1223456666 33333344489999864333222 2333445566666654
Q ss_pred CCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCee
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQ 265 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~ 265 (386)
... .-...|.+.--|. ..+.|.-++..
T Consensus 88 ~F~--------~g~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 88 RFE--------DGYAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred Eec--------CCEEEEEcceeeCCCeEEEEEECCcc
Confidence 322 2345688766553 48999987765
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.1 Score=42.30 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=42.7
Q ss_pred CCccEEEEEEeeee-----CCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 149 EGQPVQLECFAGGH-----PTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 149 ~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
-++++.++|.++.. ....+.|..++..+...++. +..+|.+... ..-.|+|+|++.+....
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~-~~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFS-KNLSGNYTCEAINKFNK 95 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecc-ccCCCceeEEEeecccC
Confidence 47889999988542 24469999999887655554 3345555443 34589999999875554
|
|
| >PHA03189 UL14 tegument protein; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.37 Score=39.77 Aligned_cols=98 Identities=11% Similarity=0.214 Sum_probs=49.3
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcE--EEEecCCccccccccccCCc------eeEEeccceeeecCCCcceEEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPV--IWMKVDRNKVTEPLPISTGS------SLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v--~W~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
+.+..+..|+.++++|.+.... ...| ..-........-......|. .-...+.++++..-......+|.+
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 4566788999999999986432 2222 11111111100011111221 111222333333333334445655
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDL 129 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 129 (386)
++..+-+|.|.|...|...+.....+.|
T Consensus 139 -~v~t~taG~Y~CvLrN~tHglv~~rf~i 166 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNETHGLVLQRFVI 166 (348)
T ss_pred -EEEecccceEEEEeccccceeeeEEeee
Confidence 4556679999999987765554444433
|
|
| >cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.15 Score=34.14 Aligned_cols=75 Identities=11% Similarity=0.167 Sum_probs=46.5
Q ss_pred cEEEEEE-EEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 242 DMDLECH-VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 242 ~~~l~C~-~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
.+.-.|. +.|.|++.|+|.-+-.. ....+.....++.....+.+.+......|+-..+|.+.+..-+...++.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G-----~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKG-----EAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCC-----ceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 4556899 57899999999744211 11111111112222345667777778888888999999886555566665
Q ss_pred E
Q psy8823 321 F 321 (386)
Q Consensus 321 ~ 321 (386)
.
T Consensus 97 ~ 97 (98)
T cd05890 97 N 97 (98)
T ss_pred c
Confidence 4
|
Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.4 Score=34.48 Aligned_cols=156 Identities=15% Similarity=0.237 Sum_probs=83.6
Q ss_pred EEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCC-----C------------c------eEEeeeEEEECCCCCCCCeE
Q psy8823 146 VVSEGQPVQLECFAG-GHPTPRISWRRENNAILPT-----G------------G------SIYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~-----~------------~------~~~~~~~l~i~~~~~~d~g~ 201 (386)
....++.|.|.|... +..-....|+++....... . . .....++|+|..+..+..|-
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 355689999999863 3333468898755332210 0 0 01135789999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeE--E--
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS--I-- 276 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~--~-- 276 (386)
|+|++....+....-.-.+.|+.... +.-. .....-.+.|-+-+.-.+-..|.-+|-. ..+..+. +
T Consensus 115 Ytc~~ks~~~k~E~c~kCl~V~~~~V~~~W~------e~nNeT~V~CyVgS~~~dvp~W~V~GVv---ttGg~~sg~i~~ 185 (251)
T PHA02982 115 FTCEAKDAEGKEETCEKCLEIQKEDILYVVE------EHNNETIITCFVGSKHGDVPRFIVAGIV---TTGGPMSGEIPK 185 (251)
T ss_pred eEEEEecCCCchheeheeeeEecceEEEEEE------ecCCeEEEEEEEEeccCCCccEEEeeEE---ecCCcccccccc
Confidence 99999986655333233444422111 1111 1123455789885544443489877653 1122111 0
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.............+.+.+--.++--.-.|+..-.
T Consensus 186 gfn~~segy~y~~Ikin~s~~~~V~kp~CRy~~~ 219 (251)
T PHA02982 186 GFNQDSEGYRYNSIKINESVTDHIEKPYCRYWID 219 (251)
T ss_pred ccccccCceEEEEEEEcccccccccccEEEEEcC
Confidence 0111222334445555554344555567776543
|
|
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.15 Score=50.59 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=115.8
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeee-EEEEEE--------------ecCCeeec--CCCceEEEeCCccEEEEEEe
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISA-EVDLQV--------------RRPPVISD--NSTRSLVVSEGQPVQLECFA 159 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~l~v--------------~~~p~~~~--~~~~~~~~~~g~~v~l~C~~ 159 (386)
+..|.+....+.+.|+|......+..... ...+.+ ..++.... .....+....+..+++.|..
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~ 358 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL 358 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence 56667777777788888766443322111 111111 11121111 11233445567779999999
Q ss_pred eeeCCCe-EEEEEcCeeeCCCCceE------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe-----cce
Q psy8823 160 GGHPTPR-ISWRRENNAILPTGGSI------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF-----APV 227 (386)
Q Consensus 160 ~~~~~~~-v~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~-----~p~ 227 (386)
.+.+.+. +.|++++.......+.. .....+.+..+...+.+.|.|.+.|..+........+.... ++.
T Consensus 359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~ 438 (1205)
T KOG0613|consen 359 SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPK 438 (1205)
T ss_pred cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCcc
Confidence 8888776 99999876654433211 12456788889999999999999998876433322222211 111
Q ss_pred EeeCCCcccccCC--CcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 228 ITVPKPRLGQALQ--YDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 228 ~~~~~~~~~~~~g--~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+.. ........+ +.+.+.|...+++.+ .++|.+++.. ... ... ........+|.+.-....|+|.|
T Consensus 439 ~kk-~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~--~s~--~s~-----~l~r~~~tslLlk~~~~~~~A~~ 508 (1205)
T KOG0613|consen 439 FKK-DVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLP--LSD--RSV-----TLTRDVLTSLLLKVASLSDGAQY 508 (1205)
T ss_pred ccc-cccccccccCCcccccccCCCCccccceeEeeccCCcc--ccc--ccc-----cccccchhhheeeccCCCccchh
Confidence 111 112222233 678889998888765 4566666544 111 110 01112355677777888888888
Q ss_pred EEEEEcCCCc
Q psy8823 304 ICRAANKLGT 313 (386)
Q Consensus 304 ~C~a~n~~g~ 313 (386)
.-......|.
T Consensus 509 ~~a~~~~~~k 518 (1205)
T KOG0613|consen 509 TRALRTLQGK 518 (1205)
T ss_pred hhhhhccCCC
Confidence 6554444333
|
|
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.62 Score=41.76 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=29.4
Q ss_pred eEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 95 TYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 95 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
..-|.|.+++.+++|.|+-...++.+ .....+.|.|..
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 34799999999999999998876544 445566677765
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.059 Score=43.51 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=37.5
Q ss_pred CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 253 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
..|.+.|..+++.. +.......+. .++.|.+.+....++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~-l~gn~~~nIT--------~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKP-LSGNSYVNIT--------ETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcc-cCCCCeEEEc--------cCceEEeeccccccCCceEEEEEEEe
Confidence 36789999776551 3344444443 47789999999999999999988765
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.51 Score=31.80 Aligned_cols=69 Identities=14% Similarity=0.374 Sum_probs=42.5
Q ss_pred eeccceeeecCCcEEEEEEEeeC-----CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYA-----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+.|+..++..|++++..|..... ....+.|..++..++ +.+++...+. ..++++.+.
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP---------------~~qy~~in~~---~SsVT~~~~ 69 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP---------------GSQYRVINDT---VSSVTLPNL 69 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST---------------CGCEEEESTT---EEEEEESS-
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC---------------hhHcceeCCe---EEEEEEccC
Confidence 45677788999999999998732 344589999876442 2233332222 246777777
Q ss_pred CCCCCeEEEEEe
Q psy8823 104 QETDAGYYRCQV 115 (386)
Q Consensus 104 ~~~d~G~Y~C~~ 115 (386)
....+-.|.|..
T Consensus 70 ~~~~~~L~cC~l 81 (89)
T PF06328_consen 70 NPTGATLFCCKL 81 (89)
T ss_dssp -SSEEEEEEEEE
T ss_pred CCCCceEEEEEE
Confidence 776666777764
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.11 Score=45.61 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=60.0
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.--|....+-.|++..+.|.+.|.+...|+|.+.-..- ...+.. +......-.....+.|.|-+....
T Consensus 199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr----------~~vv~~-~nq~~e~p~vtstcql~ic~ewq~ 267 (560)
T KOG4597|consen 199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANR----------ENVVMR-PNQTVENPVVTSTCQLVICNEWQA 267 (560)
T ss_pred cccCcchhhcccchhhcccccccCCcCceeeeehhhccc----------cceeec-CccccCCcceeeeeeEEEcchhhc
Confidence 333445566889999999999999999999998743211 111111 111111122345668999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|+|.|+|.+.+..+.. .+.+.+.+
T Consensus 268 ~a~w~tCs~rcg~g~~-~rdv~c~s 291 (560)
T KOG4597|consen 268 DAGWYTCSARCGAGFL-RRDVPCSS 291 (560)
T ss_pred CCCceeecccccccee-eccceeee
Confidence 9999999998654433 34444443
|
|
| >PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.6 Score=29.42 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=51.6
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+.+.|+..+|..|+++.+.|..+-..+..+.|.-.-. ......+. +-..+.+.|++.
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~------------k~~~~~g~----------~W~~f~LsnV~~ 62 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS------------KTELDSGP----------QWKAFQLSNVTE 62 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSE------------EEEEEEET----------TEEEEEEEEE-S
T ss_pred EEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecC------------CcccCCCC----------cEEEEEEEcccc
Confidence 47788999999999999999998633333344432110 00111111 122678888886
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
| ..-.|.+.=. +....+...|+|+.+|.
T Consensus 63 -d-s~~~C~~~C~-g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 63 -D-SSPLCFFNCS-GEQSSASANITVYKPPE 90 (91)
T ss_dssp -C-EEEEEEEEET-TEEEEEEEEEEEEB--S
T ss_pred -C-CeEEEEEEcC-CeEEEeEEeeEEeCCCC
Confidence 4 5667877643 45567888999998874
|
They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A. |
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=5.3 Score=35.55 Aligned_cols=39 Identities=33% Similarity=0.341 Sum_probs=26.6
Q ss_pred ceEEEEEcccCCCCCeEEEEEeEEcccce-eeeEEEEEEe
Q psy8823 94 STYTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDLQVR 132 (386)
Q Consensus 94 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~ 132 (386)
.|.+|.|.+++.+|+|.|+-.+....... ..+.+.|.|.
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred ecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 35689999999999999999875433222 2333555553
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.76 Score=39.24 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=17.2
Q ss_pred cEEEEEEEeeC--CCCcEEEEec
Q psy8823 41 TVELKCSVQYA--QDYPVIWMKV 61 (386)
Q Consensus 41 ~v~L~C~~~~~--~~~~v~W~~~ 61 (386)
.++|.|.+.|. ....+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 58999999864 4566899998
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.14 Score=41.37 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCeeeCCCCce--EEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 163 PTPRISWRRENNAILPTGGS--IYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 163 ~~~~v~W~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
..|.+.|..+++........ ....+.|.+.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 35789999877666554432 2356779999999999999999997644
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=5.8 Score=35.17 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=48.6
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec-----CCee-------------ecCCCceEEEeCCccEEEEE
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR-----PPVI-------------SDNSTRSLVVSEGQPVQLEC 157 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~p~~-------------~~~~~~~~~~~~g~~v~l~C 157 (386)
.-|.|.+++..++|.|+-...++.+......+.|.|.. +|.. ............|+++.+.-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 47999999999999999988866555556666777741 1111 11122334456788887666
Q ss_pred Eeee-----eCCCeEEEEE
Q psy8823 158 FAGG-----HPTPRISWRR 171 (386)
Q Consensus 158 ~~~~-----~~~~~v~W~~ 171 (386)
.... .-...+.|+.
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEeecccCCCceEEEEEEE
Confidence 5431 1234689986
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.65 Score=39.63 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=17.7
Q ss_pred cEEEEEEEEecCCC--eeEEEeC
Q psy8823 242 DMDLECHVEAYPPP--AIVWIKE 262 (386)
Q Consensus 242 ~~~l~C~~~g~p~~--~~~W~~~ 262 (386)
.++|.|.|.|+-+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999996555 7899999
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.71 Score=31.81 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=30.8
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
+..|.|..++..|+|.|.-++++..|......+.+.|.
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 56899999999999999999999999876777777663
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >KOG1026|consensus | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.35 Score=46.01 Aligned_cols=160 Identities=20% Similarity=0.237 Sum_probs=91.1
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
..+..|..+++.|...+.+-+.+.|+..+........... ......+. ++.|.++|..+. ....+.+.+
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--------~~~c~~E~~~~~-~~~~v~~~~ 272 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLE--------NDLCIAENAVAR-SNPSILLVV 272 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeee--------chhhHHHHhhhh-cCceeeeEE
Confidence 3467788999999999999999999987765543222111 01111111 178999887776 444555555
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEE---EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCC
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHV---EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 299 (386)
..++........... .-.|.. .+.|.+...|..++.............. .. ..-+....-.-.+
T Consensus 273 ~~p~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s--~~-----~~C~~~~~~~h~~ 339 (774)
T KOG1026|consen 273 DLPKAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKS--GK-----EQCLPWNDPPHSH 339 (774)
T ss_pred ecccccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceEecccccccc--cC-----cCCcccCcCcccc
Confidence 555433222111111 223443 3566667889888766222211111110 00 0112222225567
Q ss_pred CeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 300 YGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 300 ~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.|.|+|.+.|..|.........+...|
T Consensus 340 ~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 340 NGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cCcceeeecccCccccccCcCccccCC
Confidence 899999999999988777666666555
|
|
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=91.83 E-value=2.5 Score=27.79 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=24.8
Q ss_pred eeEEEEeecccCCCeEEEEEE-EcCCCceeeEEEEEE
Q psy8823 287 DTTIRVITIEKRQYGSYICRA-ANKLGTSEKTVELFE 322 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v 322 (386)
...+.......+|+|.+.|.| .+.....+..+.|.+
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 334556667779999999999 666555555565554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.6 Score=29.37 Aligned_cols=59 Identities=15% Similarity=0.363 Sum_probs=38.7
Q ss_pred EEEEEEe-eeeCCCeEEEEEc--Cee----eCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 153 VQLECFA-GGHPTPRISWRRE--NNA----ILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 153 v~l~C~~-~~~~~~~v~W~~~--~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
+.-.|.+ .|.|++.|+|.-+ |.. ....++...-.+.+.+......|....+|++.+...
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~ 88 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND 88 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence 5568875 8999999999843 221 111122233345677777777888899999988633
|
Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ |
| >PHA03240 envelope glycoprotein M; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.65 Score=36.11 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=43.6
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEe-------cCCccccccccccC----CceeEEeccceeeecCCCcceEEEEEc
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMK-------VDRNKVTEPLPIST----GSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+..+.+|++|+|--.-...+...+.||+ +++.... .+-... +.................-.|++|.|.
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~-plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLH-PICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCc-eeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 3457899999997544334667799999 2222111 111110 000000000011122223456699999
Q ss_pred ccCCCCCeEEEEE
Q psy8823 102 DIQETDAGYYRCQ 114 (386)
Q Consensus 102 ~~~~~d~G~Y~C~ 114 (386)
++..+|.|+|.-.
T Consensus 111 ~vn~sd~~nYcr~ 123 (258)
T PHA03240 111 HLNLSDAGEYCRK 123 (258)
T ss_pred EEeecCcchhhhc
Confidence 9999999999543
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.8 Score=27.59 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=40.1
Q ss_pred EEeCCccEEEEEEeee-----eCCCeEEEEEcCeeeCCCCceEEe--eeEEEECCCCCCCCeEEEEEEec
Q psy8823 146 VVSEGQPVQLECFAGG-----HPTPRISWRRENNAILPTGGSIYR--GSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.+..|++++..|.... .....+.|..++..+....-.... .+.+++.+......-.|.|....
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~~ 83 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLAW 83 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEECT
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEcc
Confidence 5788999999998842 234579999998865554433332 35677888776666677777543
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=89.34 E-value=4.5 Score=26.60 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=26.0
Q ss_pred CeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEec
Q psy8823 165 PRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
+.+.|+..+... ...............|+|.+.|.|..
T Consensus 27 ~~~~l~~~~~k~------~~~~~~~~~~~~~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 27 PSLFLENPGKKS------LETKKLVSTFTPTTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEEECSSCEE------EEESSEEEEESBTCGGSEEEEEEEEE
T ss_pred hhheeeccCccc------cccceEEEEecCCCCCCEEEEEEEcC
Confidence 457776655443 22344567778888999999999953
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily | Back alignment and domain information |
|---|
Probab=87.77 E-value=6.6 Score=26.54 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=48.4
Q ss_pred eCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEE
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 308 (386)
+.++...+..|+++.+.|+. .-+.| .+.|.-.-....+..+. .-..+.|.+++. | ....|.+.
T Consensus 8 v~P~~~vV~~G~Sv~VNCSt-sC~~p~~~GLET~L~k~~~~~g~-------------~W~~f~LsnV~~-d-s~~~C~~~ 71 (91)
T PF03921_consen 8 VSPEEPVVPPGGSVWVNCST-SCPQPEKIGLETSLSKTELDSGP-------------QWKAFQLSNVTE-D-SSPLCFFN 71 (91)
T ss_dssp EESSEEEEETTEEEEEEEEE-SSSS-SEEEEESSSEEEEEEEET-------------TEEEEEEEEE-S-C-EEEEEEEE
T ss_pred EECCccEECCCCCEEEEEcC-CCCCCCcceEEEecCCcccCCCC-------------cEEEEEEEcccc-C-CeEEEEEE
Confidence 34555667789999999998 44444 56665433331121111 234567788886 3 67889988
Q ss_pred cCCCceeeEEEEEEEecC
Q psy8823 309 NKLGTSEKTVELFESIIP 326 (386)
Q Consensus 309 n~~g~~~~~~~l~v~~~p 326 (386)
=......+++.|.|-..|
T Consensus 72 C~g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 72 CSGEQSSASANITVYKPP 89 (91)
T ss_dssp ETTEEEEEEEEEEEEB--
T ss_pred cCCeEEEeEEeeEEeCCC
Confidence 654455677888776655
|
They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A. |
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.9 Score=38.94 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
+.|.|.+++.+|+|.|+-...+..+......+.|.|..
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp --------------------------------------
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 47999999999999999988765444444456666654
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.36 E-value=2 Score=26.70 Aligned_cols=33 Identities=18% Similarity=0.506 Sum_probs=24.1
Q ss_pred cceeeecCCcEEEEEEEeeC---CCCcEEEEecCCc
Q psy8823 32 QEQIKDIGGTVELKCSVQYA---QDYPVIWMKVDRN 64 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~ 64 (386)
....+..|+.++|.|.+.-. ..+.|.|.-|+..
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~ 40 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMY 40 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcE
Confidence 45568899999999999733 2345888887643
|
|
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.15 E-value=2.9 Score=26.05 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=26.4
Q ss_pred ceEEEeCCccEEEEEEee-e--eCCCeEEEEEcCeee
Q psy8823 143 RSLVVSEGQPVQLECFAG-G--HPTPRISWRRENNAI 176 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~-~--~~~~~v~W~~~~~~~ 176 (386)
..+.+..|.+++|.|++. | ...+.+.|.-|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 566788899999999984 3 234569999988776
|
|
| >PHA03112 IL-18 binding protein; Provisional | Back alignment and domain information |
|---|
Probab=85.39 E-value=1.5 Score=32.09 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=20.9
Q ss_pred eecCCcEEEEEEEeeC-CC-CcEEEEecCC
Q psy8823 36 KDIGGTVELKCSVQYA-QD-YPVIWMKVDR 63 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~-~~-~~v~W~~~~~ 63 (386)
-.+|+.+.|.|.+.+. |. ..+.|..++.
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~ 64 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNN 64 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCC
Confidence 4579999999998754 43 3488997763
|
|
| >PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT | Back alignment and domain information |
|---|
Probab=84.98 E-value=2.1 Score=39.03 Aligned_cols=252 Identities=14% Similarity=0.097 Sum_probs=18.6
Q ss_pred EEEEcccCCCCCeEE--EEEeE--EcccceeeeEEEEEEecCCeeecCC-CceEEEeCCccEEEEEEeeeeC-------C
Q psy8823 97 TLLVKDIQETDAGYY--RCQVI--IGINNKISAEVDLQVRRPPVISDNS-TRSLVVSEGQPVQLECFAGGHP-------T 164 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y--~C~~~--~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~g~~v~l~C~~~~~~-------~ 164 (386)
.|.|..... -.|.| ...+. ..........+.|.|...|...... .....+..++.+.|.......| .
T Consensus 39 ~l~ip~~~L-~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~ 117 (440)
T PF02010_consen 39 QLTIPPYTL-PPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSG 117 (440)
T ss_dssp ECEEECES---SCEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------
T ss_pred EEEeCcccC-CCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCCc
Confidence 677777655 23444 45554 2223344666777777655433222 1222333345677766443222 2
Q ss_pred CeEEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEe--cCCCCceeeeEEEEEE--ecceEeeCC
Q psy8823 165 PRISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAE--NGVGKGTRRNIAVEVE--FAPVITVPK 232 (386)
Q Consensus 165 ~~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~--~~~~~~~~~~~~l~v~--~~p~~~~~~ 232 (386)
..+.|........ ...........+.|..........|...+. ...+........+.+. .+|.+.+..
T Consensus 118 l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~ 197 (440)
T PF02010_consen 118 LTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISC 197 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEcc
Confidence 4688886543322 001111234456664443333333655553 3333222333344332 233333322
Q ss_pred C---cccccCCCcEEEEEEEEec----CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 233 P---RLGQALQYDMDLECHVEAY----PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 233 ~---~~~~~~g~~~~l~C~~~g~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
. ...+..++.+.|...+.+. ....+.|..............+...............|.|..-..+.++.|..
T Consensus 198 ~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~ 277 (440)
T PF02010_consen 198 VSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTF 277 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeecccccccccccccccccccccccccccccccccccccccccc
Confidence 1 1225666777776554432 23478898600000000000000000111112235566776555555556664
Q ss_pred --EEEcCCCce-eeEEEEEEEecCCCCC-CCCCce-eecCcceeeeEEe
Q psy8823 306 --RAANKLGTS-EKTVELFESIIPVCPP-QTQPSE-LLPLRNVNMAVIF 349 (386)
Q Consensus 306 --~a~n~~g~~-~~~~~l~v~~~p~~~~-~~~~~~-~~~~~~~~~~c~~ 349 (386)
.|.+..+.. .+++.+.+..+|..-. ...+.. ..-....++.|..
T Consensus 278 ~l~v~~~~~~~~~a~~~~~~n~pP~~g~c~v~P~~G~al~T~Ft~~c~~ 326 (440)
T PF02010_consen 278 RLTVTDSSGSSGSASISFTVNAPPSGGSCSVSPSSGYALETTFTITCSG 326 (440)
T ss_dssp -------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 555555543 5566666644443111 011111 1122357778864
|
The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A. |
| >PHA03189 UL14 tegument protein; Provisional | Back alignment and domain information |
|---|
Probab=83.93 E-value=22 Score=29.95 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=21.7
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.+|++ ++..+.+|.|.|...|..-.--..-.+.|.+
T Consensus 134 ltLtF-~v~t~taG~Y~CvLrN~tHglv~~rf~ivtd 169 (348)
T PHA03189 134 LTLTF-RVSTSTAGMYECVLRNETHGLVLQRFVIVTD 169 (348)
T ss_pred EEEEE-EEEecccceEEEEeccccceeeeEEeeeeee
Confidence 34444 3555778999999999864443333333433
|
|
| >PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host [] | Back alignment and domain information |
|---|
Probab=80.69 E-value=9.9 Score=23.60 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=14.9
Q ss_pred eecCCcEEEEEEEeeCCCCcEEEEe
Q psy8823 36 KDIGGTVELKCSVQYAQDYPVIWMK 60 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~~~~~v~W~~ 60 (386)
|..|++++|. |++...|.||+
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4578888876 44556799995
|
This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 386 | ||||
| 2om5_A | 381 | N-Terminal Fragment Of Human Tax1 Length = 381 | 3e-14 | ||
| 3laf_A | 403 | Structure Of Dcc, A Netrin-1 Receptor Length = 403 | 4e-14 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 6e-14 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 4e-11 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 6e-14 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 2e-06 | ||
| 3jxa_A | 383 | Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = | 6e-14 | ||
| 3kld_A | 384 | Ptprg Cntn4 Complex Length = 384 | 7e-14 | ||
| 1cs6_A | 382 | N-terminal Fragment Of Axonin-1 From Chicken Length | 8e-14 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 9e-14 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 6e-07 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 1e-13 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 3e-12 | ||
| 2wim_A | 291 | Crystal Structure Of Ncam2 Ig1-3 Length = 291 | 5e-12 | ||
| 3grw_A | 241 | Fgfr3 In Complex With A Fab Length = 241 | 5e-11 | ||
| 3p3y_A | 404 | Crystal Structure Of Neurofascin Homophilic Adhesio | 8e-11 | ||
| 3p3y_A | 404 | Crystal Structure Of Neurofascin Homophilic Adhesio | 1e-07 | ||
| 3v2a_R | 772 | Vegfr-2VEGF-A Complex Structure Length = 772 | 7e-10 | ||
| 2nzi_A | 305 | Crystal Structure Of Domains A168-A170 From Titin L | 9e-10 | ||
| 1qz1_A | 291 | Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam | 1e-09 | ||
| 2ill_A | 195 | Anomalous Substructure Of Titin-A168169 Length = 19 | 3e-09 | ||
| 2j8h_A | 197 | Structure Of The Immunoglobulin Tandem Repeat A168- | 3e-09 | ||
| 3v6b_R | 424 | Vegfr-2VEGF-E Complex Structure Length = 424 | 4e-09 | ||
| 2v5t_A | 189 | Crystal Structure Of Ncam2 Ig2-3 Length = 189 | 5e-09 | ||
| 2xyc_A | 291 | Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | 9e-09 | ||
| 2jll_A | 389 | Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | 1e-08 | ||
| 1ry7_B | 334 | Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com | 1e-08 | ||
| 2v9q_A | 212 | First And Second Ig Domains From Human Robo1 Length | 2e-08 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 3e-08 | ||
| 3s97_C | 201 | Ptprz Cntn1 Complex Length = 201 | 6e-08 | ||
| 2vra_A | 208 | Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20 | 9e-08 | ||
| 2vr9_A | 217 | Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21 | 9e-08 | ||
| 3pxj_A | 210 | Tandem Ig Repeats Of Dlar Length = 210 | 2e-07 | ||
| 2yd1_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 3e-07 | ||
| 1rhf_A | 182 | Crystal Structure Of Human Tyro3-D1d2 Length = 182 | 4e-07 | ||
| 1rhf_A | 182 | Crystal Structure Of Human Tyro3-D1d2 Length = 182 | 1e-06 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 5e-07 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 7e-07 | ||
| 1bih_A | 395 | Crystal Structure Of The Insect Immune Protein Hemo | 1e-06 | ||
| 1bih_A | 395 | Crystal Structure Of The Insect Immune Protein Hemo | 3e-05 | ||
| 2v9t_A | 117 | Complex Between The Second Lrr Domain Of Slit2 And | 1e-06 | ||
| 2v5m_A | 388 | Structural Basis For Dscam Isoform Specificity Leng | 2e-06 | ||
| 2v5s_A | 394 | Structural Basis For Dscam Isoform Specificity Leng | 2e-06 | ||
| 2v5r_A | 391 | Structural Basis For Dscam Isoform Specificity Leng | 3e-06 | ||
| 1evt_C | 225 | Crystal Structure Of Fgf1 In Complex With The Extra | 3e-06 | ||
| 1cvs_C | 225 | Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L | 4e-06 | ||
| 3ojv_C | 226 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 4e-06 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 9e-06 | ||
| 3pxh_A | 201 | Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt | 1e-05 | ||
| 1e07_A | 642 | Model Of Human Carcinoembryonic Antigen By Homology | 1e-05 | ||
| 3lcy_A | 197 | Titin Ig Tandem Domains A164-A165 Length = 197 | 1e-05 | ||
| 1ie5_A | 107 | Nmr Structure Of The Third Immunoglobulin Domain Fr | 1e-05 | ||
| 1tlk_A | 154 | X-Ray Structure Determination Of Telokin, The C-Ter | 2e-05 | ||
| 1fhg_A | 154 | High Resolution Refinement Of Telokin Length = 154 | 2e-05 | ||
| 2yd6_A | 212 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 2e-05 | ||
| 1iil_E | 220 | Crystal Structure Of Pro253arg Apert Mutant Fgf Rec | 3e-05 | ||
| 2fdb_P | 220 | Crystal Structure Of Fibroblast Growth Factor (Fgf) | 3e-05 | ||
| 1ev2_E | 220 | Crystal Structure Of Fgf2 In Complex With The Extra | 3e-05 | ||
| 3ojm_B | 231 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 4e-05 | ||
| 1e0o_B | 219 | Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C | 4e-05 | ||
| 1ii4_E | 220 | Crystal Structure Of Ser252trp Apert Mutant Fgf Rec | 5e-05 | ||
| 1cr9_L | 219 | Crystal Structure Of The Anti-Prion Fab 3f4 Length | 5e-05 | ||
| 3oj2_C | 231 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 6e-05 | ||
| 2yd9_A | 304 | Crystal Structure Of The N-Terminal Ig1-3 Module Of | 7e-05 | ||
| 3kvq_A | 108 | Crystal Structure Of Vegfr2 Extracellular Domain D7 | 8e-05 | ||
| 2yr3_A | 99 | Solution Structure Of The Fourth Ig-Like Domain Fro | 8e-05 | ||
| 1djs_A | 216 | Ligand-binding Portion Of Fibroblast Growth Factor | 1e-04 | ||
| 1wio_A | 363 | Structure Of T-Cell Surface Glycoprotein Cd4, Tetra | 2e-04 | ||
| 1nct_A | 106 | Titin Module M5, N-Terminally Extended, Nmr Length | 2e-04 | ||
| 3fmg_L | 211 | Structure Of Rotavirus Outer Capsid Protein Vp7 Tri | 2e-04 | ||
| 2id5_A | 477 | Crystal Structure Of The Lingo-1 Ectodomain Length | 2e-04 | ||
| 2wv3_A | 190 | Neuroplastin-55 Binds To And Signals Through The Fi | 2e-04 | ||
| 2wv3_A | 190 | Neuroplastin-55 Binds To And Signals Through The Fi | 5e-04 | ||
| 1nun_B | 230 | Crystal Structure Analysis Of The Fgf10-fgfr2b Comp | 3e-04 | ||
| 1tnm_A | 100 | Tertiary Structure Of An Immunoglobulin-Like Domain | 3e-04 | ||
| 1nbq_A | 209 | Crystal Structure Of Human Junctional Adhesion Mole | 3e-04 | ||
| 3t0e_E | 373 | Crystal Structure Of A Complete Ternary Complex Of | 3e-04 | ||
| 4fom_A | 308 | Crystal Structure Of Human Nectin-3 Full Ectodomain | 5e-04 | ||
| 2dm3_A | 110 | Solution Structure Of The Second Ig Domain Of Human | 6e-04 | ||
| 2yd3_A | 202 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 6e-04 | ||
| 4frw_A | 218 | Crystal Structure Of Human Nectin-4 Extracellular F | 6e-04 | ||
| 3kj4_L | 219 | Structure Of Rat Nogo Receptor Bound To 1d9 Antagon | 8e-04 | ||
| 2yd2_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 8e-04 | ||
| 2yd4_A | 210 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 8e-04 |
| >pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381 | Back alignment and structure |
|
| >pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383 | Back alignment and structure |
|
| >pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384 | Back alignment and structure |
|
| >pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291 | Back alignment and structure |
|
| >pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241 | Back alignment and structure |
|
| >pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404 | Back alignment and structure |
|
| >pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404 | Back alignment and structure |
|
| >pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772 | Back alignment and structure |
|
| >pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305 | Back alignment and structure |
|
| >pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291 | Back alignment and structure |
|
| >pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195 | Back alignment and structure |
|
| >pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197 | Back alignment and structure |
|
| >pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424 | Back alignment and structure |
|
| >pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189 | Back alignment and structure |
|
| >pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291 | Back alignment and structure |
|
| >pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389 | Back alignment and structure |
|
| >pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334 | Back alignment and structure |
|
| >pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201 | Back alignment and structure |
|
| >pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208 | Back alignment and structure |
|
| >pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217 | Back alignment and structure |
|
| >pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210 | Back alignment and structure |
|
| >pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212 | Back alignment and structure |
|
| >pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182 | Back alignment and structure |
|
| >pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395 | Back alignment and structure |
|
| >pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395 | Back alignment and structure |
|
| >pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117 | Back alignment and structure |
|
| >pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388 | Back alignment and structure |
|
| >pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394 | Back alignment and structure |
|
| >pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391 | Back alignment and structure |
|
| >pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225 | Back alignment and structure |
|
| >pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225 | Back alignment and structure |
|
| >pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
| >pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201 | Back alignment and structure |
|
| >pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642 | Back alignment and structure |
|
| >pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197 | Back alignment and structure |
|
| >pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107 | Back alignment and structure |
|
| >pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms Resolution Length = 154 | Back alignment and structure |
|
| >pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin Length = 154 | Back alignment and structure |
|
| >pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212 | Back alignment and structure |
|
| >pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220 | Back alignment and structure |
|
| >pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220 | Back alignment and structure |
|
| >pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220 | Back alignment and structure |
|
| >pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231 | Back alignment and structure |
|
| >pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219 | Back alignment and structure |
|
| >pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220 | Back alignment and structure |
|
| >pdb|1CR9|L Chain L, Crystal Structure Of The Anti-Prion Fab 3f4 Length = 219 | Back alignment and structure |
|
| >pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231 | Back alignment and structure |
|
| >pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304 | Back alignment and structure |
|
| >pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108 | Back alignment and structure |
|
| >pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99 | Back alignment and structure |
|
| >pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216 | Back alignment and structure |
|
| >pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal Crystal Form Length = 363 | Back alignment and structure |
|
| >pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106 | Back alignment and structure |
|
| >pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In Co A Neutralizing Fab Length = 211 | Back alignment and structure |
|
| >pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477 | Back alignment and structure |
|
| >pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The Fibroblast Growth Factor Receptor Length = 190 | Back alignment and structure |
|
| >pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The Fibroblast Growth Factor Receptor Length = 190 | Back alignment and structure |
|
| >pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230 | Back alignment and structure |
|
| >pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100 | Back alignment and structure |
|
| >pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209 | Back alignment and structure |
|
| >pdb|3T0E|E Chain E, Crystal Structure Of A Complete Ternary Complex Of T Cell Receptor, Peptide-Mhc And Cd4 Length = 373 | Back alignment and structure |
|
| >pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain (D1-D3) Length = 308 | Back alignment and structure |
|
| >pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110 | Back alignment and structure |
|
| >pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202 | Back alignment and structure |
|
| >pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment D1-D2 Length = 218 | Back alignment and structure |
|
| >pdb|3KJ4|L Chain L, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 219 | Back alignment and structure |
|
| >pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214 | Back alignment and structure |
|
| >pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 2e-74
Identities = 57/305 (18%), Positives = 112/305 (36%), Gaps = 26/305 (8%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
R + + + +G + C V A+D + W + G L
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN------------GEKLSPN 48
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
R ++ ++ + TL + + DAG Y+C V + A V++++ + + N+
Sbjct: 49 QQRISVVWND-DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFK-NA 106
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---IYRGSILKIPQITKED 198
EG+ + C P I W+ + ++ + + L+I I K D
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166
Query: 199 RGTYYCVAENGVGKGT-RRNIAVEVEFAPVITVPKPRLGQALQY--DMDLECHVEAYPPP 255
GTY C ++I V V P + + + + L C + +P P
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226
Query: 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
+ W K+ + N + H + D + + + ++K Y+C A NK G +
Sbjct: 227 TMSWTKDGEP--IENEEEDDEKHIFSDD---SSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 316 KTVEL 320
++ L
Sbjct: 282 ASIHL 286
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 3e-52
Identities = 62/302 (20%), Positives = 105/302 (34%), Gaps = 32/302 (10%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
++ + +G + C+ + + W II R
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAI-GEPESIDWYNPQG-------------EKIISTQR 50
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
++ + L + + DAG YRCQ A V L++ +
Sbjct: 51 VVVQKE--GVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSP 107
Query: 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDRGT 201
+G+ ++ C P P +SW N + + + + L+I I K D G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167
Query: 202 YYCVAEN-GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD--LECHVEAYPPPAIV 258
Y C G+ R+I V V P I++P+ + + C P PAI
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 227
Query: 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
W + +++ N+ Y + ++T + V I G Y+CRA NK G EK
Sbjct: 228 WFRNG--KLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQA 278
Query: 319 EL 320
L
Sbjct: 279 FL 280
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-30
Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 15/186 (8%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSI 188
++ S + +S G+ C A G P I W + + + S
Sbjct: 4 LLQVT-ISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECH 248
L I ED G Y C A + G+ + +E+ D ++ C
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 249 VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308
V + P PA+ W+ + + ++ +++ + ++++ I K G Y C
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAM--------LANNNLQILNINKSDEGIYRCEGR 173
Query: 309 NKLGTS 314
+
Sbjct: 174 VEARGE 179
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 7e-29
Identities = 49/220 (22%), Positives = 79/220 (35%), Gaps = 29/220 (13%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPI 72
+ L Q+ T + Q G E+ C P V W+ + +
Sbjct: 91 VVLEIYQK-LTFREVVSPQEFKQGEDAEVVCR---VSSSPAPAVSWLYHNE-------EV 139
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQV 131
+T S D+RFA+ + L + +I ++D G YRC+ + ++ + V
Sbjct: 140 TTIS-----DNRFAMLAN-----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189
Query: 132 RRPPVISDN-STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSI 188
PP IS + + G+ + C A G P P ISW R I +
Sbjct: 190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE 249
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228
L + I D G Y C A N G+ + ++V
Sbjct: 250 LTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVFVQHHH 288
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 3e-48
Identities = 68/306 (22%), Positives = 117/306 (38%), Gaps = 41/306 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P +G + KC V + W K +R I
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR--------------EIRPGGN 51
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPVISDNST 142
+ + +T TL V + + DAG Y C N K S L V+ PP
Sbjct: 52 YKMTLV--ENTATLTVLKVTKGDAGQYTCYAS---NVAGKDSCSAQLGVQEPPRFIKKLE 106
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSILKIPQITKED 198
S +V + + + EC GG P ++ W ++ I + + ++L++ ++ ED
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKP---RLGQALQYDMDLECHVEAYPP 254
G Y C A N G + +++V+ PV P P G + LEC ++ PP
Sbjct: 167 SGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVH----LECELQGTPP 221
Query: 255 PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314
+ W K+ + L + + Y I E T+I ++ ++ G Y C+A+N +G+
Sbjct: 222 FQVSWHKDK--RELRSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCKASNDVGSY 274
Query: 315 EKTVEL 320
+
Sbjct: 275 TCVGSI 280
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 14/114 (12%), Positives = 35/114 (30%), Gaps = 23/114 (20%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLII 80
+ P G V L+C +Q + W K +
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQ-GTPPFQVSWHK--------------DKRELR 234
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVR 132
++ I + + ++ + ++ D G Y+C+ +G + + ++
Sbjct: 235 SGKKYKIMSE--NFLTSIHILNVDSADIGEYQCKASNDVG---SYTCVGSITLK 283
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 165 bits (418), Expect = 8e-48
Identities = 53/302 (17%), Positives = 98/302 (32%), Gaps = 33/302 (10%)
Query: 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASS 94
+ G TVEL C+ + W ++ K+ + R R
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 95 -TYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPV 153
+ L++K+++ D+ Y C+V ++ EV L V SD + +GQ +
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEV----EDQ-KEEVQLLVFGLTANSDTH-----LLQGQSL 114
Query: 154 QLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213
L + +P + R P G +I G L + Q+ +D GT+ C K
Sbjct: 115 TLTLESPPGSSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK- 167
Query: 214 TRRNIAVEV-EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED--------- 263
I + V F ++ + G+ +++ L VE +W + +
Sbjct: 168 VEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWI 227
Query: 264 -----TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
++V T+ + G+ K G + V
Sbjct: 228 TFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEV 287
Query: 319 EL 320
L
Sbjct: 288 NL 289
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 3e-14
Identities = 26/210 (12%), Positives = 59/210 (28%), Gaps = 25/210 (11%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
I++ S + +++ + + + L +V+ +W + +R ++
Sbjct: 172 IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDL 231
Query: 76 S--SLIIRDSRFAIRY---DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQ 130
+ ++ + TL Q +G + K+ EV+L
Sbjct: 232 KNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTG-KLHQEVNLV 290
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK 190
V R L C G +P++ + K
Sbjct: 291 VMRAT--------------QLQKNLTCEVWGPTSPKLMLSLKLE-----NKEAKVSKREK 331
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAV 220
+ + G + C+ + NI V
Sbjct: 332 AVWVLNPEAGMWQCLLSDSGQVLLESNIKV 361
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 2e-47
Identities = 47/301 (15%), Positives = 93/301 (30%), Gaps = 32/301 (10%)
Query: 38 IGGTVELKCSVQY-----AQDYPVIWMKVDRNKVTEPLPISTGSSLII--RDSRFAIRYD 90
+G +V L C +Q + W + + + G S R A R
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEG 150
+L + ++ D G Y C + S ++ L+V P + + ++
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ-KVQLTGE 132
Query: 151 QPVQLECFA-GGHPTPRISWRRENNAILPT-------GGSIYRGSILKIPQITKEDRGTY 202
C + GG P +I+W + + T G++ S+ + ++ D
Sbjct: 133 PVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNV 192
Query: 203 YCVAENGVGKGTRR-NIAVEVEFA-PVITVPKPRLGQALQYDMDLECHVEAYPPPA-IVW 259
C E+ + + + + V + V Q + L C + P P W
Sbjct: 193 TCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNW 252
Query: 260 IKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319
L + + ++K + IC N LG + +
Sbjct: 253 STTMGP--LPPFAVAQ-----------GAQLLIRPVDKPINTTLICNVTNALGARQAELT 299
Query: 320 L 320
+
Sbjct: 300 V 300
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 1e-25
Identities = 34/201 (16%), Positives = 61/201 (30%), Gaps = 19/201 (9%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
P + Q+ +C + I W + S + S
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG-------GMPNTSQVPGFLS 170
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI-IGINNKISAEVDLQVRRPPVISDNST 142
T + T ++ + D C+V V+L V PP +S +
Sbjct: 171 G------TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGY 224
Query: 143 RSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGT 201
+ L C A +P P +W + ++ +G+ L I + K T
Sbjct: 225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL--PPFAVAQGAQLLIRPVDKPINTT 282
Query: 202 YYCVAENGVGKGTRRNIAVEV 222
C N +G + + V+V
Sbjct: 283 LICNVTNALGAR-QAELTVQV 302
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 2e-16
Identities = 29/231 (12%), Positives = 64/231 (27%), Gaps = 34/231 (14%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTP-----RISWRRENNAI---------LPTGGSIYRG 186
+ + G V L C+ +++W R + P+ R
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 187 SI-------------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
L++ + ED G Y C+ +I + V P T
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125
Query: 234 RLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292
++ + C PP I W + T+ +S T T++ +
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLS-----GTVTVTSLWI 180
Query: 293 ITIEKRQYG-SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRN 342
+ + G + C+ ++ + + + ++ +
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG 231
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 6e-47
Identities = 58/314 (18%), Positives = 116/314 (36%), Gaps = 36/314 (11%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
+ + + P+ + ++ + +G V +C + ++ V W K
Sbjct: 93 LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK--------------D 138
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR- 132
L+ D+ + + TL + ++ G Y C +G SA++ L
Sbjct: 139 GELLKDDANLQTSFI--HNVATLQILQTDQSHVGQYNCSASNPLG-TASSSAKLTLSEHE 195
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSI 188
PP D S+ ++ G+ +C G +I+W ++N I P G +
Sbjct: 196 VPPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 254
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD--LE 246
L + ++TK D G Y C A N GK + + V+ P + ++ D E
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKK-LEPSRIVKQDEHTRYE 312
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C + P ++W K++ + + + +S + + + + G Y C
Sbjct: 313 CKIGGSPEIKVLWYKDE--TEIQESSKFRMSF-----VESVAVLEMYNLSVEDSGDYTCE 365
Query: 307 AANKLGTSEKTVEL 320
A N G++ + L
Sbjct: 366 AHNAAGSASSSTSL 379
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 1e-46
Identities = 65/314 (20%), Positives = 119/314 (37%), Gaps = 39/314 (12%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPI 72
+ L+ + P +G + KC + W K +R +
Sbjct: 189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCH---VTGTAPIKITWAKDNR-----EIRP 240
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQ 130
+ + +T TL V + + DAG Y C + G K S L
Sbjct: 241 G---------GNYKMTLV--ENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLG 286
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----G 186
V+ PP S +V + + + EC GG P ++ W ++ I +
Sbjct: 287 VQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 346
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246
++L++ ++ ED G Y C A N G + +++V+ PV + D+ LE
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 405
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C ++ PP + W K+ + L + + Y I E T+I ++ ++ G Y C+
Sbjct: 406 CELQGTPPFQVSWHKDK--RELRSGKKYKIM-----SENFLTSIHILNVDSADIGEYQCK 458
Query: 307 AANKLGTSEKTVEL 320
A+N +G+ +
Sbjct: 459 ASNDVGSDTCVGSI 472
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 8e-41
Identities = 63/306 (20%), Positives = 113/306 (36%), Gaps = 45/306 (14%)
Query: 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFA 86
I + +I +C + + + V+W K + I S+F
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK--------------DETEIQESSKFR 339
Query: 87 IRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVISDNSTR 143
+ + S L + ++ D+G Y C+ N S+ L+V+ PPV
Sbjct: 340 MSFV--ESVAVLEMYNLSVEDSGDYTCEAH----NAAGSASSSTSLKVKEPPVFRKKP-H 392
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITKED 198
+ +G V LEC G P ++SW + + L +G + + I + D
Sbjct: 393 PVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSGKKYKIMSENFLTSIHILNVDSAD 451
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP----KPRLGQALQYDMDLECHVEAYPP 254
G Y C A N VG ++ ++ P +G+ +Q L+ +E P
Sbjct: 452 IGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQ----LQATIEGAEP 506
Query: 255 PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314
++ W K D +++ + + IS+ T++ E G Y C+ N+ GT
Sbjct: 507 ISVAWFK-DKGEIVRESDNIWISY-----SENIATLQFSRAEPANAGKYTCQIKNEAGTQ 560
Query: 315 EKTVEL 320
E L
Sbjct: 561 ECFATL 566
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-40
Identities = 58/313 (18%), Positives = 114/313 (36%), Gaps = 50/313 (15%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P + IG + L+C V + + W K L
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEH-----TKLRS---------APA 51
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVR---RPPVIS 138
+ +++ ++ +L++ + +D G Y C+ N +++ L ++ PP +
Sbjct: 52 YKMQFK--NNVASLVINKVDHSDVGEYTCKA----ENSVGAVASSAVLVIKERKLPPSFA 105
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSILKIPQI 194
+ + + G PV EC G ++SW ++ + I+ + L+I Q
Sbjct: 106 R-KLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQT 164
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEV---EFAPVITVPKP----RLGQALQYDMDLEC 247
+ G Y C A N +G + + + E P + LG++ +C
Sbjct: 165 DQSHVGQYNCSASNPLGT-ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGT----FKC 219
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
HV P I W K++ + + +Y ++ T+ V+ + K G Y C A
Sbjct: 220 HVTGTAPIKITWAKDN--REIRPGGNYKMTL-----VENTATLTVLKVTKGDAGQYTCYA 272
Query: 308 ANKLGTSEKTVEL 320
+N G + +L
Sbjct: 273 SNVAGKDSCSAQL 285
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 28/205 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P G V L+C +Q + V W K + +
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK--------------DKRELRSGKK 430
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVISDNST 142
+ I + + ++ + ++ D G Y+C+ +G + + ++ PP
Sbjct: 431 YKIMSE--NFLTSIHILNVDSADIGEYQCKASNDVG---SDTCVGSITLKAPPRFVKKL- 484
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITKE 197
+ G+ VQL+ G ++W ++ I+ +I+ + L+ +
Sbjct: 485 SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA 544
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEV 222
+ G Y C +N G + V
Sbjct: 545 NAGKYTCQIKNEAGT-QECFATLSV 568
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 7e-47
Identities = 65/293 (22%), Positives = 100/293 (34%), Gaps = 41/293 (13%)
Query: 39 GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G + L C W+ + RF +
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIF-------------NEYPSYQDNRRFVSQETG-----N 158
Query: 98 LLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR-------RPPVISDNSTRSLVVS 148
L + ++++D G Y C V + + + L +R P I ++
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218
Query: 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-GSILKIPQITKEDRGTYYCVAE 207
+G V+LECFA G+P P I WRR + + ++ IL+IP +ED G+Y CVAE
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAE 278
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQV 267
N GK + P + A++ + EC P P W+K
Sbjct: 279 NSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG--DP 335
Query: 268 LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
L I T+ + + G Y C A NK G + EL
Sbjct: 336 LLTRDRIQIE---------QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-36
Identities = 61/304 (20%), Positives = 88/304 (28%), Gaps = 58/304 (19%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
V+L C + P + W + I + D I
Sbjct: 23 EKKVKLSCE---VKGNPKPHIRWKLNG-----TDVDIGMDFRYSVVDGSLLIN------- 67
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
+ DAG Y+C +S E LQ + ++ V GQ + L
Sbjct: 68 -----NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 156 ECFA-GGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212
C +W L I ++ K D G Y CV N V
Sbjct: 123 LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTN 182
Query: 213 GTR---------RNIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKE 262
RN V E+ P I V P A + + LEC P P I+W +
Sbjct: 183 HKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA 242
Query: 263 DTQQVLTNNQHYS------ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316
D + + + + I +F D GSY C A N G +
Sbjct: 243 DGKPIARKARRHKSNGILEIPNFQQEDA----------------GSYECVAENSRGKNVA 286
Query: 317 TVEL 320
+L
Sbjct: 287 KGQL 290
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 4e-29
Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 24/211 (11%)
Query: 134 PPVISD--NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSI 188
PV + + SE + V+L C G+P P I W+ + Y GS+
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP-----RLGQALQYDM 243
L +D GTY C+A N G R ++ + R GQ +
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV--- 121
Query: 244 DLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
L C + WI + +N+ + + + +EK G+
Sbjct: 122 -LLCGPPPHSGELSYAWIFNE-YPSYQDNRRFVSQE--------TGNLYIAKVEKSDVGN 171
Query: 303 YICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
Y C N + + I+ +
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGE 202
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 6e-28
Identities = 47/200 (23%), Positives = 69/200 (34%), Gaps = 34/200 (17%)
Query: 19 TTAQRTPTISYISQEQIK-DIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPIST 74
+ P I E + + G TV+L+C A P ++W + D PI+
Sbjct: 199 VMGEYEPKIEVQFPETVPAEKGTTVKLECF---ALGNPVPTILWRRADGK------PIAR 249
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN---KISAEVDLQV 131
+ + L + + Q+ DAG Y C N K A+ L
Sbjct: 250 KARRHKSNG-------------ILEIPNFQQEDAGSYECVA----ENSRGKNVAKGQLTF 292
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKI 191
P + V+ + V EC A G P P W + + +L L I
Sbjct: 293 YAQPNWV-QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNI 351
Query: 192 PQITKEDRGTYYCVAENGVG 211
+ D G Y CVAEN G
Sbjct: 352 TIVNLSDAGMYQCVAENKHG 371
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 8e-46
Identities = 57/314 (18%), Positives = 103/314 (32%), Gaps = 40/314 (12%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
+ E+ G +L C + A P+I W K + + D
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLS-------GADPNADVTDFDR 153
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR----------R 133
R D + Y +V +D Y C ++ V+ +++
Sbjct: 154 RITAGPD--GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GS 187
PV ++ ++ G + C G +P ++ + + G
Sbjct: 212 EPVPQ-YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 270
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQALQYDMDLE 246
L ED G Y C +NGVGK + ++ + V AP P+ + D+ +
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP 330
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C V P P +VW + L+ + TD+ + + ++ G Y CR
Sbjct: 331 CKVTGLPAPNVVWSHNA--KPLSGGRA----------TVTDSGLVIKGVKNGDKGYYGCR 378
Query: 307 AANKLGTSEKTVEL 320
A N+ G +
Sbjct: 379 ATNEHGDKYFETLV 392
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 130 bits (327), Expect = 3e-34
Identities = 48/324 (14%), Positives = 88/324 (27%), Gaps = 54/324 (16%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSL 78
+ P + E + L+C ++ Q W K + ++
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGK-----SYNWQEHNAA 56
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
+ +D +L+ Q +D G+Y+C S + +
Sbjct: 57 LRKDE------------GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASP 104
Query: 139 DNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYRGS---------- 187
T EG+P QL+C +P P I+W++ + P
Sbjct: 105 A-KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNL 163
Query: 188 -ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE----------FAPVITVP----K 232
+ + D Y C A+N + E++ PV
Sbjct: 164 YFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM 223
Query: 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292
+ G + C + P + K + N I+ +
Sbjct: 224 AKAGDVTM----IYCMYGSNPMGYPNYFKNGKD--VNGNPEDRITRHNRTS---GKRLLF 274
Query: 293 ITIEKRQYGSYICRAANKLGTSEK 316
T G Y C N +G +K
Sbjct: 275 KTTLPEDEGVYTCEVDNGVGKPQK 298
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-31
Identities = 43/222 (19%), Positives = 69/222 (31%), Gaps = 14/222 (6%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIY--- 184
L V + PV+ D ++ E P LEC G+ + SW+++ + +
Sbjct: 1 LPVDKYPVLKDQPA-EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK 59
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL----GQALQ 240
L + D G Y C AE G + R I+ + G+ Q
Sbjct: 60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQ 119
Query: 241 YDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299
L+C + AYP P I W K + + + V +
Sbjct: 120 ----LDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSD 175
Query: 300 YGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLR 341
Y+C A N E + +E E +P
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 6e-30
Identities = 44/196 (22%), Positives = 67/196 (34%), Gaps = 21/196 (10%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTG 75
+ + P Y+S++ + G + C P + K +
Sbjct: 207 SGYKGEPVPQYVSKDMMAKAGDVTMIYCM---YGSNPMGYPNYFKNGK------------ 251
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + I +S LL K D G Y C+V G+ + L V P
Sbjct: 252 --DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP 309
Query: 136 VISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
+ +VV +GQ V + C G P P + W N L G + S L I +
Sbjct: 310 KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVK 368
Query: 196 KEDRGTYYCVAENGVG 211
D+G Y C A N G
Sbjct: 369 NGDKGYYGCRATNEHG 384
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 4e-45
Identities = 68/311 (21%), Positives = 114/311 (36%), Gaps = 50/311 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
++ +G TV LKC V P + W K + L G
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIG---DPMPTIHWQKNQQ-----DLNPIPG------ 167
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
DSR + + L + +Q D+G YRC + + E ++++ P +
Sbjct: 168 DSRVVV-----LPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL 222
Query: 142 T-----RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQI 194
+++ EG+ LEC G+P P +W R I S+ GS L I +
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNV 282
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR-----LGQALQYDMDLECHV 249
T +D GTY CV + + V P P ++ EC V
Sbjct: 283 TDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNH-PSNLYAYESMDIE----FECAV 336
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
P P + W+K V+ + ++ I + +R++ + K G Y C A N
Sbjct: 337 SGKPVPTVNWMKNG--DVVIPSDYFQIV--------GGSNLRILGVVKSDEGFYQCVAEN 386
Query: 310 KLGTSEKTVEL 320
+ G ++ + +L
Sbjct: 387 EAGNAQSSAQL 397
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 5e-43
Identities = 67/314 (21%), Positives = 110/314 (35%), Gaps = 36/314 (11%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSL 78
+R+ + + GG V L CS + + PVI W K L +
Sbjct: 17 GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG-----LILALG----- 66
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVI 137
D R + + +L + D G Y+C+ +G + + IS + V P
Sbjct: 67 --MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRF 124
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS----IYRGSILKIPQ 193
+ T S+ G V L+C G P P I W++ + P G + L+I +
Sbjct: 125 L-SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-------YDMDLE 246
+ D G Y C A N T V + P + Q D LE
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQ-LYFLQRPSNVIAIEGKDAVLE 242
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C V YPPP+ W++ + L + ++ + + + + + G+Y C
Sbjct: 243 CCVSGYPPPSFTWLRGEEVIQLRSKKYSLLG---------GSNLLISNVTDDDSGTYTCV 293
Query: 307 AANKLGTSEKTVEL 320
K + EL
Sbjct: 294 VTYKNENISASAEL 307
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 8e-29
Identities = 44/238 (18%), Positives = 67/238 (28%), Gaps = 31/238 (13%)
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTG 180
RR + V G V L C A P I W+++ +
Sbjct: 9 SSHHHHHHGGRRSLHFV-SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGM 67
Query: 181 GSIYR----GSI----LKIPQITKEDRGTYYCVAENGVGKGTR-RNIAVEVEFAPVITV- 230
+ GS+ + + K D G Y C A G R V V
Sbjct: 68 DDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ 127
Query: 231 PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFT 286
+ +G + L+C V P P I W K + + +
Sbjct: 128 TESITAFMGD----TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV--------LP 175
Query: 287 DTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFESIIPVCPPQTQPSELLPLRNV 343
+++ ++ G Y C A N T E+ I+ Q L NV
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV--RILSDPGLHRQLYFLQRPSNV 231
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 4e-45
Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 9/192 (4%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRIS--WRRENNAILPTGGSIYRGSIL 189
+ P I S ++ PV L+C + W + N L
Sbjct: 1 QNEPRIV-TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTATRKNASNMEY 58
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
+I + ED G Y+CV + N +EV+ AP IT K + D + C
Sbjct: 59 RINKPRAEDSGEYHCVYHFVSA--PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS 116
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ-YGSYICRAA 308
YP P +W K++ + S F ++ T + ++ ++ + G Y C A
Sbjct: 117 VGYPHPEWMWRKKENG--VFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNAT 174
Query: 309 NKLGTSEKTVEL 320
N +G++ + L
Sbjct: 175 NSIGSASVSTVL 186
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-28
Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 42/206 (20%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI---WMKVDRNKVTEPLPISTGSSL 78
Q P I + I+D V L+C++ + + ++ W K ++
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLT-SSSHTLMYSYWTKNGV-------ELTATRKN 52
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPV 136
S + + D+G Y C + A ++V+ P
Sbjct: 53 A--------------SNMEYRINKPRAEDSGEYHCVY----HFVSAPKANATIEVKAAPD 94
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---------GS 187
I+ RS +EGQ + C + G+P P WR++ N + + +
Sbjct: 95 IT-GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT 153
Query: 188 ILKIPQI-TKEDRGTYYCVAENGVGK 212
L I + ED G Y C A N +G
Sbjct: 154 ELNIVNLQITEDPGEYECNATNSIGS 179
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 2e-44
Identities = 58/311 (18%), Positives = 95/311 (30%), Gaps = 45/311 (14%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII 80
A P I E + G TV L+C + V W T + S L
Sbjct: 1 AGSIPVIEPSVPELVVKPGATVTLRCVG----NGSVEWDGPPSPHWTL-YSDGSSSILST 55
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
+ + G YRC G SA + L V+ P +
Sbjct: 56 NN--------------------ATFQNTGTYRC-TEPGDPLGGSAAIHLYVKDPARPWNV 94
Query: 141 STRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKE 197
+ +VV E Q L C +S R L S I +
Sbjct: 95 LAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFI 154
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKP----RLGQALQYDMDLECHV 249
Y C A G K +I ++V+ P +T+ G+A Q + C
Sbjct: 155 QSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ----IVCSA 210
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
+ V+++ + ++ Q F T+ + ++ + G+Y C A+N
Sbjct: 211 SSVDVNFDVFLQHNNTKLAIPQQS----DFHNNRYQKVLTLNLDQVDFQHAGNYSCVASN 266
Query: 310 KLGTSEKTVEL 320
G ++
Sbjct: 267 VQGKHSTSMFF 277
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-26
Identities = 38/229 (16%), Positives = 78/229 (34%), Gaps = 32/229 (13%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPIST 74
I+L + ++QE + L C + + V ++V
Sbjct: 81 IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVR------------ 128
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR- 133
++R + + + S + + + + Y+C ++G +S + L+V++
Sbjct: 129 -GRPLMRHTNY-----SFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKV 182
Query: 134 ---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSI 183
PP ++ LV G+ Q+ C A + + NN L
Sbjct: 183 IPGPPALT-LVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRY 241
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK 232
+ L + Q+ + G Y CVA N GK ++ V + +
Sbjct: 242 QKVLTLNLDQVDFQHAGNYSCVASNVQGK-HSTSMFFRVVESAGNSHHH 289
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-24
Identities = 40/200 (20%), Positives = 60/200 (30%), Gaps = 17/200 (8%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
PVI + LVV G V L C G + W + S SIL
Sbjct: 4 IPVIEPSVP-ELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLY-SDGSSSILSTNN 57
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-DMDLECHVEAY 252
T ++ GTY C G+ I + V+ + + D L C +
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGSAA-IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDP 116
Query: 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
A V + + L + +YS S + + Q Y C A
Sbjct: 117 VLEAGVSLVRVRGRPLMRHTNYSFSP--------WHGFTIHRAKFIQSQDYQCSALMGGR 168
Query: 313 TSE-KTVELFESIIPVCPPQ 331
++ L + PP
Sbjct: 169 KVMSISIRLKVQKVIPGPPA 188
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 20/129 (15%)
Query: 13 FFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI 72
L P ++ + E ++ G ++ CS ++++ + K+ P
Sbjct: 175 IRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP--- 231
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI---SAEVDL 129
+ + TL + + AG Y C +N S +
Sbjct: 232 ----------QQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVA----SNVQGKHSTSMFF 277
Query: 130 QVRRPPVIS 138
+V S
Sbjct: 278 RVVESAGNS 286
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 4e-43
Identities = 57/329 (17%), Positives = 106/329 (32%), Gaps = 34/329 (10%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP----VIWMKVDRNKVTEPLPISTGSSLII 80
+ ++ IG V L CS V W K N + + I S +
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQK-STNGSKQNVAIYNPSMGVS 73
Query: 81 RDSRFAIRY---DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137
+ + R + + T+ + ++ D G Y C+ ++++L V P
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN 133
Query: 138 S----DNSTRSLVVSEGQPVQLECF-AGGHPTPRISWRRENN------AILPTGGSIYRG 186
R+ + + + C A G P +SW I G++
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-YDMDL 245
S ++ + + + C+ + + + ++ + V++ P +T+ LQ D+ L
Sbjct: 194 SRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKL 252
Query: 246 ECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
C +A PP W + L T I G+YI
Sbjct: 253 TCKADANPPATEYHWTTLN--GSLPKGVEAQ----------NRTLFFKGPINYSLAGTYI 300
Query: 305 CRAANKLGTSEKTVELFESIIPVCPPQTQ 333
C A N +GT VE+ +
Sbjct: 301 CEATNPIGTRSGQVEVNITEAAALEHHHH 329
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 78.3 bits (192), Expect = 3e-16
Identities = 29/223 (13%), Positives = 57/223 (25%), Gaps = 37/223 (16%)
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPR---ISWRRENNAILPT------ 179
Q+ R P S+ G V L C FA P+ + ++W++ N
Sbjct: 9 QMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNP 68
Query: 180 ----------------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+ +++ ++ ED G Y C + + V
Sbjct: 69 SMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVM 128
Query: 224 FAPVITVPKPRLGQALQYDMD-----LECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
P + + + D C PP + W +
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ R + S C + ++++ L
Sbjct: 189 TVTVISRYRLVPSR-----EAHQQSLACIVNYHMDRFKESLTL 226
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 4e-43
Identities = 57/311 (18%), Positives = 93/311 (29%), Gaps = 45/311 (14%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII 80
A P I E + + G TV L+C + V W
Sbjct: 1 ADPAPVIEPSGPELVVEPGETVTLRCVS----NGSVEWDG-------------------- 36
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
D S TL ++ + G YRC + S + L V+ P +
Sbjct: 37 -PISPYWTLDPESPGSTLTTRNATFKNTGTYRC-TELEDPMAGSTTIHLYVKDPAHSWNL 94
Query: 141 STRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKE 197
+ + V EGQ L C +S RE + I +
Sbjct: 95 LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL 154
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRL----GQALQYDMDLECHV 249
D TY C + T I ++V P I + +L G+A Q + C
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ----IVCSA 210
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
V +K ++ ++ + + ++ + G Y C A+N
Sbjct: 211 TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYK----KVRALSLNAVDFQDAGIYSCVASN 266
Query: 310 KLGTSEKTVEL 320
+GT T+
Sbjct: 267 DVGTRTATMNF 277
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-27
Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 32/227 (14%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
I+L + + ++QE G L C + + M+
Sbjct: 81 IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMRE------------- 127
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR- 133
G ++R + + S +++ + D+ Y C+ ++ S + L+V R
Sbjct: 128 GGRQVLRKTVY-----FFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV 182
Query: 134 ---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-------I 183
PP I LV G+ Q+ C A + + L +
Sbjct: 183 HPEPPQIK-LEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYY 241
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV 230
+ L + + +D G Y CVA N VG + +V +
Sbjct: 242 KKVRALSLNAVDFQDAGIYSCVASNDVGT-RTATMNFQVVESHHHHH 287
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-25
Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 19/219 (8%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
PVI + LVV G+ V L C + G + W + T GS L
Sbjct: 4 APVIEPSGP-ELVVEPGETVTLRCVSNG----SVEWDGPIS-PYWTLDPESPGSTLTTRN 57
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-DMDLECHVEAY 252
T ++ GTY C I + V+ + ++ + L C +
Sbjct: 58 ATFKNTGTYRCTELEDPMA-GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDP 116
Query: 253 PP-PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
++ ++E +QVL ++ + + +Y+C+
Sbjct: 117 ALKDSVSLMREGGRQVLRKTVYFFSP---------WRGFIIRKAKVLDSNTYVCKTMVNG 167
Query: 312 GTSE-KTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349
S + L + + PPQ + +R A
Sbjct: 168 RESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQI 206
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-06
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 20/131 (15%)
Query: 13 FFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI 72
+L P I + ++ G ++ CS A+ + +K K+ PL
Sbjct: 175 IWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL-- 232
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI---SAEVDL 129
+ + L + + DAG Y C +N + +A ++
Sbjct: 233 -----------NSDFQDNYYKKVRALSLNAVDFQDAGIYSCVA----SNDVGTRTATMNF 277
Query: 130 QVRRPPVISDN 140
QV +
Sbjct: 278 QVVESHHHHHH 288
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 5e-43
Identities = 67/308 (21%), Positives = 105/308 (34%), Gaps = 42/308 (13%)
Query: 25 PTISYISQEQIK-DIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRD 82
S ++ +K G V CS W+ N+ +P
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLL---NEFPNFIPAD--------G 149
Query: 83 SRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV----------IIGINNKISAEVDLQVR 132
RF + L + + +D G Y C + +++S + +
Sbjct: 150 RRFVSQTTG-----NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQ 204
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIP 192
P I GQ V LECFA G+P P+I WR+ + + T + +L I
Sbjct: 205 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQ 262
Query: 193 QITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY 252
+ ED GTY C AEN G+ + + P + D+ C
Sbjct: 263 NVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGK 321
Query: 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
P PA+ W+++ Q L + +S +R + G Y C A NK G
Sbjct: 322 PRPAVRWLRDG--QPLASQNRIEVS---------GGELRFSKLVLEDSGMYQCVAENKHG 370
Query: 313 TSEKTVEL 320
T + EL
Sbjct: 371 TVYASAEL 378
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-34
Identities = 57/305 (18%), Positives = 82/305 (26%), Gaps = 60/305 (19%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
V L C + W L + S + I
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNG-----TELKMGPDSRYRLVAGDLVI----------- 65
Query: 99 LVKDIQETDAGYYRCQVIIGINNK----ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQ 154
++ DAG Y+C N +S E L+ S + ++EG V
Sbjct: 66 -SNPVKAKDAGSYQCVA----TNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM 120
Query: 155 LECFA-GGHPTPRISWRRENNAILPTGGS----IYRGSILKIPQITKEDRGTYYCVAENG 209
C +P W L I + D G Y C A +
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180
Query: 210 VGKGTRR----------NIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIV 258
+ T+ ++AP I P AL + LEC P P I
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240
Query: 259 WIKED---TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
W K D T + L++ I + DE G+Y C A N G
Sbjct: 241 WRKLDGSQTSKWLSSEPLLHIQNVDFEDE----------------GTYECEAENIKGRDT 284
Query: 316 KTVEL 320
+
Sbjct: 285 YQGRI 289
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 5e-28
Identities = 39/205 (19%), Positives = 68/205 (33%), Gaps = 22/205 (10%)
Query: 134 PPVISD--NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSI 188
PV + T S + V L C A +P W+ + S YR G +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP-----RLGQALQYDM 243
+ + +D G+Y CVA N G R ++ F + + G +
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM--- 120
Query: 244 DLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
C YP + W+ + + + +S T + + E G+
Sbjct: 121 -FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ-------TTGNLYIAKTEASDLGN 172
Query: 303 YICRAANKLGTSEKTVELFESIIPV 327
Y C A + + K+V S + +
Sbjct: 173 YSCFATSHIDFITKSVFSKFSQLSL 197
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 7e-43
Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 15/184 (8%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDR 199
+G+ ++ C P P +SW N + + + + L+I I K D
Sbjct: 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69
Query: 200 GTYYCVAEN-GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD--LECHVEAYPPPA 256
G Y C G+ R+I V V P I++P+ + + C P PA
Sbjct: 70 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316
I W + +++ N+ Y + ++T + V I G Y+CRA NK G EK
Sbjct: 130 ISWFRNG--KLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEK 180
Query: 317 TVEL 320
L
Sbjct: 181 QAFL 184
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 4e-31
Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 23/193 (11%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
T + Q G E+ C V + P + W+ + ++T S D+
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNE-------EVTTIS-----DN 49
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQVRRPPVISD-NS 141
RFA+ + L + +I ++D G YRC+ + ++ + V PP IS
Sbjct: 50 RFAMLAN-----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 104
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKEDR 199
+ + G+ + C A G P P ISW R I + L + I D
Sbjct: 105 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDG 164
Query: 200 GTYYCVAENGVGK 212
G Y C A N G+
Sbjct: 165 GPYVCRATNKAGE 177
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 1e-42
Identities = 47/307 (15%), Positives = 91/307 (29%), Gaps = 36/307 (11%)
Query: 38 IGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
+G + ++C + + W ++ L + + T
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENK-----ALEEGNYFEMSTYSTNR-----TMIRIL 290
Query: 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS-DNSTRSLVVSEGQPVQL 155
V + D GYY C + S + + I+ NS+ + + +
Sbjct: 291 FAFVSSVARNDTGYYTCSS----SKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCF 346
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
+P R +W + + G + K G Y AEN +
Sbjct: 347 SVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQ-FT 405
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIK------EDTQQVLT 269
+ + + P + + + C + YP P+ W K T+++
Sbjct: 406 KMFTLNIRRKPQV-LAEAS-------ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITE 457
Query: 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329
+ + + +T+ + K C A N LGTS +T+ L P
Sbjct: 458 GVWNRKANRKVFGQWVSSSTLNMSEAIKG--FLVKCCAYNSLGTSCETILL---NSPGPF 512
Query: 330 PQTQPSE 336
P Q
Sbjct: 513 PFIQDGG 519
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-36
Identities = 53/361 (14%), Positives = 109/361 (30%), Gaps = 38/361 (10%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
+ ++ Y + D+ ++ L+ V + +W+ + +P
Sbjct: 40 LGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQP------ 93
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
R ++++ + ET AG Y I + + +R
Sbjct: 94 ------HFDLQNRGVV-----SMVILKMTETQAGEYLL-FIQSEATNYTILFTVSIRNTL 141
Query: 136 VISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
+ + E Q L C + P P + W ++ + +
Sbjct: 142 LYTLRRP-YFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH 199
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL--GQALQYDMDLECHVEAY- 252
+ C A N +G+ R +++ P T+P+ L G+ L + C
Sbjct: 200 ELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLW----IRCKAVHVN 255
Query: 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---GSYICRAAN 309
+ W E+ + L ++ +S + + T I + G Y C ++
Sbjct: 256 HGFGLTWELEN--KALEEGNYFEMSTY--STNRTMIRILFAFVSSVARNDTGYYTCSSSK 311
Query: 310 KLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPT---SWEPQRKQLNCS 366
S V + E ++ E+ +V F P +W RK C
Sbjct: 312 HPSQSA-LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370
Query: 367 S 367
Sbjct: 371 Q 371
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 122 bits (306), Expect = 9e-31
Identities = 37/256 (14%), Positives = 76/256 (29%), Gaps = 36/256 (14%)
Query: 102 DIQETDAGYYRCQVIIGINNKISAE----------------VDLQVRRPPVISDNSTRSL 145
+ D +C +I NN S L+ + + + ++
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE--AAAV 58
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGTY 202
V + L+ W +++++ + I ++T+ G Y
Sbjct: 59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKE 262
++ T V + + T+ +P + ++ L C E+ P P + W+
Sbjct: 119 LLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLC 176
Query: 263 DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322
D+Q + + + C A N+LG + LF
Sbjct: 177 DSQGESCKE-----------ESPAVVKKEEKVLHELFGTDIRCCARNELG--RECTRLFT 223
Query: 323 SIIPVCPPQTQPSELL 338
+ P T P L
Sbjct: 224 IDLNQTPQTTLPQLFL 239
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 1e-42
Identities = 67/313 (21%), Positives = 105/313 (33%), Gaps = 32/313 (10%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
+ L P I QE+ + G +V LKC P I W + I+
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG-GNPTPEISWELDGK-------KIAN 472
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR 132
+ L + + D G Y+C +G L V
Sbjct: 473 NDRYQVGQ----YVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG---VAEHSAKLNVY 525
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILK 190
P I + G+ + + C G+P I W R +N LP ++ L
Sbjct: 526 GLPYIR--QMEKKAIVAGETLIVTCPVAGYPIDSIVWER-DNRALPINRKQKVFPNGTLI 582
Query: 191 IPQITK-EDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDM-DLECH 248
I + + D+ TY CVA+N G R ++ V+V P I G A L C
Sbjct: 583 IENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCS 642
Query: 249 VEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
V P I W + Q ++ + + S + + + +E G++ C A
Sbjct: 643 VPGGDLPLNIDWTLDG--QAISEDLGITTSRVGR----RGSVLTIEAVEASHAGNFTCHA 696
Query: 308 ANKLGTSEKTVEL 320
N G + T L
Sbjct: 697 RNLAGHQQFTTPL 709
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 2e-41
Identities = 59/289 (20%), Positives = 99/289 (34%), Gaps = 31/289 (10%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T+ + C V ++W + +R LPI + + + + TL
Sbjct: 541 GETLIVTCPVAGYPIDSIVWERDNR-----ALPI---------NRKQKVFPN-----GTL 581
Query: 99 LVKDIQ-ETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
++++++ +D Y C +++QV P I + GQ + L C
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHC 641
Query: 158 FAGGHPTP-RISWRRENNAILPTGGSIYR-----GSILKIPQITKEDRGTYYCVAENGVG 211
G P I W + AI G GS+L I + G + C A N G
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Query: 212 KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN 271
+ V P + A D +EC + +P P + W K
Sbjct: 702 HQQ-FTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK 760
Query: 272 QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + T+ V I+K G Y+C A N +G+ V +
Sbjct: 761 DLKKSDNI----RVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 6e-41
Identities = 53/342 (15%), Positives = 91/342 (26%), Gaps = 56/342 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
++ G + +KC + V W +
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE-----ENYFPGAEY---- 189
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDA-GYYRCQVI--IGINNKISAEVDLQV------- 131
D ++ + + L ++++ D Y+C+ + ++SA V
Sbjct: 190 DGKYLV-----LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISS 244
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY------R 185
P V+S S + L C A G+P P W + +
Sbjct: 245 AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQV 304
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDL 245
L I ED G Y CV N VG + V + P
Sbjct: 305 SGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVF 363
Query: 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305
C P + W+K+ + + + I D+ G Y C
Sbjct: 364 TCQYTGNPIKTVSWMKDG-KAIGHSESVLRIESVKKEDK----------------GMYQC 406
Query: 306 RAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAV 347
N ++E + EL + P P + M
Sbjct: 407 FVRNDRESAEASAEL--KLGGRFDP---PVIRQAFQEETMEP 443
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-39
Identities = 71/335 (21%), Positives = 120/335 (35%), Gaps = 66/335 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
+ Q D G C + WMK + + S
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYT-GNPIKTVSWMKDGK-----AIGHSES-------- 389
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI-----SAEVDLQVRRPPVIS 138
L ++ +++ D G Y+C V N SAE+ L R P +
Sbjct: 390 -------------VLRIESVKKEDKGMYQCFVR----NDRESAEASAELKLGGRFDPPVI 432
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG---------GSIYRGSIL 189
+ + + G V L+C AGG+PTP ISW + I + S L
Sbjct: 433 RQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYL 492
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR---LGQALQYDMDLE 246
I + D G Y C+A++ VG + + V P I + + G+ L +
Sbjct: 493 NITSVHANDGGLYKCIAKSKVGV-AEHSAKLNVYGLPYIRQMEKKAIVAGETLI----VT 547
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ-YGSYIC 305
C V YP +IVW +++ + L N+ + F + T+ + +E+ +Y C
Sbjct: 548 CPVAGYPIDSIVWERDN--RALPINRKQKV--------FPNGTLIIENVERNSDQATYTC 597
Query: 306 RAANKLGTSEK-TVELFESIIPVCPPQTQPSELLP 339
A N+ G S + ++E+ ++P P
Sbjct: 598 VAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQ 632
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 9e-32
Identities = 40/276 (14%), Positives = 86/276 (31%), Gaps = 31/276 (11%)
Query: 98 LLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLE 156
+ + + + + +I + ++A ++ PV T + S ++E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 157 CFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDR------GTYYCVAE 207
C A G+P P I W R + + + + L P ED Y C+A
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 208 NGVGKGTRRNIAVEVEFAPVITV-PKP---RLGQALQYDMDLECHVEAY---PPPAIVWI 260
N G R++ V A G + ++C + ++ + W
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV----IKCLIPSFVADFVEVVSWH 176
Query: 261 KEDTQQVLTNNQHYSISHFATAD---EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317
++ ++ Y + + + Y SY CR ++L +
Sbjct: 177 TDE-EENYFPGAEYDGKYLVLPSGELHIREVG------PEDGYKSYQCRTKHRLTGETRL 229
Query: 318 VELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP 353
++ P + +++ L +M
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSST 265
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-26
Identities = 43/222 (19%), Positives = 74/222 (33%), Gaps = 31/222 (13%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPIS 73
+ + I + +E +G + L CSV D P + W +
Sbjct: 611 LEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP-GGDLPLNIDWTLDGQ---------- 659
Query: 74 TGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQV 131
I D + L ++ ++ + AG + C G L V
Sbjct: 660 ----AISEDLGITTSRVGRRGS-VLTIEAVEASHAGNFTCHARNLAG---HQQFTTPLNV 711
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG----- 186
PP T ++G ++EC A G P P+++W++ + +
Sbjct: 712 YVPPRWILEPT-DKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV 770
Query: 187 --SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
L + I K + G Y C A NG+G G I + V+
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 7e-42
Identities = 62/313 (19%), Positives = 106/313 (33%), Gaps = 45/313 (14%)
Query: 26 TISYISQEQIKDI----GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLII 80
+E + + G + L+C+ PVI WM + I
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS-------------SSMEPIT 160
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDA-GYYRCQV--IIGINNKISAEVDLQVRRPPVI 137
+D R + L ++ D Y C + L+V +
Sbjct: 161 QDKRVSQ-----GHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215
Query: 138 SD---------NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-YRGS 187
++ + S +V G + LEC A G PTP I+W ++ +
Sbjct: 216 AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK 275
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
L+I +++ED G Y+C+A N +G R I+V V+ AP L A D L C
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVC 334
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
P P + W+ + + + + + + E TI + Y C
Sbjct: 335 RANGNPKPTVQWMV-NGEPLQSAPPNPNR-------EVAGDTIIFRDTQISSRAVYQCNT 386
Query: 308 ANKLGTSEKTVEL 320
+N+ G +
Sbjct: 387 SNEHGYLLANAFV 399
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-37
Identities = 61/317 (19%), Positives = 108/317 (34%), Gaps = 60/317 (18%)
Query: 31 SQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAI 87
+++ I D + ++C A+ P W + I+ D R ++
Sbjct: 24 AKDHIVDPRDNILIECE---AKGNPAPSFHWTRNS-----RFFNIAK-------DPRVSM 68
Query: 88 RYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK----ISAEVDLQVRRPPVISDNSTR 143
R + + E G Y+C NK +S + LQV + P+ +
Sbjct: 69 RRRSGTLVIDFRSGGRPEEYEGEYQCFA----RNKFGTALSNRIRLQVSKSPLWPKENLD 124
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG--SIYRGSILKIPQITKED-R 199
+VV EG P+ L+C G P+P I W + + S L + +D +
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQ 184
Query: 200 GTYYCVAENGVGKGTRRNIAVEV---------EFAPVITVPKPR-------LGQALQYDM 243
Y C A ++ + E P P+ G L
Sbjct: 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL--- 241
Query: 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
LEC P P I W K+ + ++ + + +R+ + + G Y
Sbjct: 242 -LECIASGVPTPDIAWYKKG-GDLPSDKAKFENF---------NKALRITNVSEEDSGEY 290
Query: 304 ICRAANKLGTSEKTVEL 320
C A+NK+G+ T+ +
Sbjct: 291 FCLASNKMGSIRHTISV 307
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 36/231 (15%)
Query: 123 ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182
+ + ++ +PP I+ S + +V + +EC A G+P P W R +
Sbjct: 5 MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 183 IYR----GSILKIPQIT----KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP- 233
L I + +E G Y C A N G I ++V +P+
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLD 124
Query: 234 ----RLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSIS-----HFATAD 283
+ G L L+C+ P P I W+ + +T ++ S +F+
Sbjct: 125 PVVVQEGAPLT----LQCNPPPGLPSPVIFWMSSS-MEPITQDKRVSQGHNGDLYFSNVM 179
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQP 334
D Y C A + + F + +
Sbjct: 180 L-QDMQ-----------TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAER 218
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 2e-41
Identities = 49/343 (14%), Positives = 95/343 (27%), Gaps = 41/343 (11%)
Query: 13 FFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPL 70
F L + P +S + G + C+++ W + +
Sbjct: 200 FILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIK-DVSSSVYSTWKRENS-----QT 253
Query: 71 PISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQ 130
+ + + + TL + + D+G + C + L+
Sbjct: 254 KLQE------KYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG-SANVTTTLE 306
Query: 131 VRRPPVISDNSTRS--LVVSEGQPVQLECFAGGHPTPR-ISWRRENNAILPTG------- 180
V I+ + + V++G+ V L P P W N
Sbjct: 307 VVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE 366
Query: 181 --GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQA 238
+I S L + ++ + GTY + N V V P I RL
Sbjct: 367 NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN-AAIAFNVYVNTKPEILT-YDRLVNG 424
Query: 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQV-----LTNNQHYSISHFATADEFTDTTIRVI 293
+ L+C +P P I W + + +++ +
Sbjct: 425 M-----LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479
Query: 294 TIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
+ + G+ C+A N +G + Q P
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNN--KEQIHPHH 520
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 5e-39
Identities = 49/320 (15%), Positives = 102/320 (31%), Gaps = 41/320 (12%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
+ + + + ++C + + +K + K +
Sbjct: 110 FVRDPAKLFLVDRSLYGKEDNDTLVRCPLT-DPEVTNYSLKGCQGK------------PL 156
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQET-DAGYYRCQVIIGINNKISAEVDLQVR----RP 134
+D RF +++K ++ C V + +S + L+VR
Sbjct: 157 PKDLRF-----IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTG---------GSIY 184
PV+S S S ++ EG+ + C + +W+REN+ +
Sbjct: 212 PVVS-VSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQALQYDM 243
R + L I D G + C A N G +EV I + P +
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGS-ANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329
Query: 244 D--LECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
+ L EA+P P WI + + T+ ++ + + + ++ +
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMN--RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387
Query: 301 GSYICRAANKLGTSEKTVEL 320
G+Y +N + +
Sbjct: 388 GTYTFLVSNSDVNAAIAFNV 407
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-35
Identities = 48/308 (15%), Positives = 92/308 (29%), Gaps = 51/308 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P+I + I +G + L C+ V W ++ E
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNEN--------------- 77
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
+ + + T+ G Y C + +S + + VR P + RS
Sbjct: 78 ---------KQNEWITEKAEATNTGKYTCTN----KHGLSNSIYVFVRDPAKLFLVD-RS 123
Query: 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGT 201
L E + C S + LP + I+ R
Sbjct: 124 LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183
Query: 202 YYCVAENGVGKGTRRNIAVEV----EFAPVITVPKPRL----GQALQYDMDLECHVEAYP 253
+C + ++V + PV++V K G+ + C ++
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT----VTCTIKDVS 239
Query: 254 PPAIV-WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
W +E++Q + Y+ H + T+ + + G ++C A N G
Sbjct: 240 SSVYSTWKRENSQ--TKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 297
Query: 313 TSEKTVEL 320
++ T L
Sbjct: 298 SANVTTTL 305
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 31/239 (12%), Positives = 68/239 (28%), Gaps = 35/239 (14%)
Query: 107 DAGYYRCQVIIGINNKI---SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP 163
A + C +++ + + V PP I + L+V G ++L C G
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKS-DLIVRVGDEIRLLCTDPGF- 63
Query: 164 TPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+ W E + + + + + G Y C ++G+ +I V V
Sbjct: 64 ---VKWTFEILDE----TNENKQNEWITEKAEATNTGKYTCTNKHGLSN----SIYVFVR 112
Query: 224 FAPVITVPKP----RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279
+ + + D + C + P +K + L + +
Sbjct: 113 DPAKLFLVDRSLYGKEDN----DTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDP- 166
Query: 280 ATADEFTDTTIRVITIEK-RQYGSYICRAANKLGTSEK-TVELFESIIPVCPPQTQPSE 336
I + ++++ C + + L P S+
Sbjct: 167 -------KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSK 218
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 35/146 (23%)
Query: 197 EDRGTYYCV----AENGVGKGTRRNIAVEVEFAPVITVPKP----RLGQALQYDMDLECH 248
+ CV G ++ +++ P I K R+G ++ L C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGS-SQPSVSPGEPSPPSIHPGKSDLIVRVGDEIR----LLCT 59
Query: 249 VEAYPPPAIVWIKEDTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
+ + W E + N Q+ + + G Y C
Sbjct: 60 DPGF----VKWTFEILDETNENKQNEWITEKAEATNT----------------GKYTCTN 99
Query: 308 ANKLGTSEKTVELFESIIPVCPPQTQ 333
+ L S V + + ++
Sbjct: 100 KHGLSNSI-YVFVRDPAKLFLVDRSL 124
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 5e-41
Identities = 57/340 (16%), Positives = 91/340 (26%), Gaps = 53/340 (15%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
+ L + G + L C W +
Sbjct: 195 VILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGT-------FQQST 247
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDLQVRR- 133
L I + I ++G Y CQ + + V
Sbjct: 248 QELFIPN--------------------ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILK 190
PP S S V + V L C T + W NN LP + L
Sbjct: 288 PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV--NNQSLPVSPRLQLSNDNRTLT 345
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-DMDLECHV 249
+ +T+ D G Y C +N + + + V + P P ++ L CH
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA 405
Query: 250 EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309
+ PP W+ + + + Q IS+ + G Y C+A N
Sbjct: 406 ASNPPAQYSWLIDG--NIQQHTQELFISNITEKNS----------------GLYTCQANN 447
Query: 310 KLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349
+T ++ P + S AV F
Sbjct: 448 SASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAF 487
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 1e-39
Identities = 62/324 (19%), Positives = 104/324 (32%), Gaps = 41/324 (12%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
I + P I+ + ++D V L C + Q+ +W ++ LP+S
Sbjct: 282 ITVYAEPPKPFITSNNSNPVED-EDAVALTCEPE-IQNTTYLWWVNNQ-----SLPVSP- 333
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
R ++ TL + + D G Y C + ++ S V L V P
Sbjct: 334 ------------RLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGP 381
Query: 136 VISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
S G + L C A +P + SW + G L I IT
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-------GNIQQHTQELFISNIT 434
Query: 196 KEDRGTYYCVAENGVGKGTRR---NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY 252
+++ G Y C A N +R I V E + + C EA
Sbjct: 435 EKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ 494
Query: 253 PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
+W Q L + +S+ + T+ + + + +Y+C N +
Sbjct: 495 NTT-YLWWVNG--QSLPVSPRLQLSN-------GNRTLTLFNVTRNDARAYVCGIQNSVS 544
Query: 313 TSE-KTVELFESIIPVCPPQTQPS 335
+ V L P P + P
Sbjct: 545 ANRSDPVTLDVLYGPDTPIISPPD 568
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 4e-39
Identities = 59/320 (18%), Positives = 101/320 (31%), Gaps = 40/320 (12%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
+ + + + V C + QD +W + + LP+S
Sbjct: 107 YPELPKPSISSNNSKPVEDKDAVAFTCEPE-TQDATYLWWVNN-----QSLPVSP----- 155
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD 139
R ++ TL + ++ D Y+C+ ++ + S V L V P
Sbjct: 156 --------RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPT 207
Query: 140 NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDR 199
S + G+ + L C A +P + SW T L IP IT +
Sbjct: 208 ISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-------ELFIPNITVNNS 260
Query: 200 GTYYCVAENGVGKGTRR---NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA 256
G+Y C A N R I V E + + L C E
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT- 319
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE- 315
+W + Q L + +S+ + T+ ++++ + G Y C N+L
Sbjct: 320 YLWWVNN--QSLPVSPRLQLSND-------NRTLTLLSVTRNDVGPYECGIQNELSVDHS 370
Query: 316 KTVELFESIIPVCPPQTQPS 335
V L P P +
Sbjct: 371 DPVILNVLYGPDDPTISPSY 390
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 8e-39
Identities = 55/310 (17%), Positives = 94/310 (30%), Gaps = 26/310 (8%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G V L + W K +R + + + +L
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR-RPPVISDNSTRSLVVSEGQPVQLEC 157
L+++I + D G+Y VI A +V P S +S S V + V C
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133
Query: 158 FAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDRGTYYCVAENGVGKGT 214
+ W NN LP + L + +T+ D +Y C +N V
Sbjct: 134 EPETQDATYLWWV--NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARR 191
Query: 215 RRNIAVEVEFAPVITVPKPRLGQALQYD-MDLECHVEAYPPPAIVWIKEDTQQVLTNNQH 273
++ + V + P P + ++L CH + PP W + Q
Sbjct: 192 SDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG--TFQQSTQE 249
Query: 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII-PVCPPQT 332
I + + GSY C+A N +T ++ P
Sbjct: 250 LFIPNITVNNS----------------GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFI 293
Query: 333 QPSELLPLRN 342
+ P+ +
Sbjct: 294 TSNNSNPVED 303
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 2e-38
Identities = 52/320 (16%), Positives = 82/320 (25%), Gaps = 71/320 (22%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
+ L + G + L C + W+
Sbjct: 373 VILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQYSWLIDGN-------IQQH 424
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQV 131
L I +I E ++G Y CQ NN S +
Sbjct: 425 TQELFI--------------------SNITEKNSGLYTCQA----NNSASGHSRTTVKTI 460
Query: 132 R---RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---R 185
P S +S S V + V C T + W N LP +
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSPRLQLSNG 518
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP-----RLGQALQ 240
L + +T+ D Y C +N V + ++V + P + P G L
Sbjct: 519 NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLN 578
Query: 241 YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
L CH + P P W + Q I+ +
Sbjct: 579 ----LSCHSASNPSPQYSWRING--IPQQHTQVLFIAKITPNNN---------------- 616
Query: 301 GSYICRAANKLGTSEKTVEL 320
G+Y C +N ++
Sbjct: 617 GTYACFVSNLATGRNNSIVK 636
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 26/202 (12%)
Query: 14 FLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIS 73
+A+ + + + V C + AQ+ +W + LP+S
Sbjct: 457 VKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNG-----QSLPVS 510
Query: 74 TGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133
L + TL + ++ DA Y C + ++ S V L V
Sbjct: 511 PRLQLSNGNR-------------TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLY 557
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
P S G + L C + +P+P+ SWR G +L I +
Sbjct: 558 GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN-------GIPQQHTQVLFIAK 610
Query: 194 ITKEDRGTYYCVAENGVGKGTR 215
IT + GTY C N
Sbjct: 611 ITPNNNGTYACFVSNLATGRNN 632
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 3e-20
Identities = 32/215 (14%), Positives = 53/215 (24%), Gaps = 33/215 (15%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRR---------------ENNAILPTGG-----SI 183
V+EG+ V L SW + P I
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV-EFAPVITVPKPRLGQALQYD 242
Y + L I I + D G Y V P ++ D
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKD 127
Query: 243 -MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
+ C E +W + ++ S + T+ + + +
Sbjct: 128 AVAFTCEPETQDAT-YLWWVNNQSLPVSPRLQLSNG---------NRTLTLFNVTRNDTA 177
Query: 302 SYICRAANKLGTSE-KTVELFESIIPVCPPQTQPS 335
SY C N + +V L P P + +
Sbjct: 178 SYKCETQNPVSARRSDSVILNVLYGPDAPTISPLN 212
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 9e-41
Identities = 47/304 (15%), Positives = 91/304 (29%), Gaps = 40/304 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P+I E I + G T+ L C V W + + +
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCID----PDFVRWT----------FKTYFNEMVENKKN- 57
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
+ + + T G Y C +N +++ + + VR P +
Sbjct: 58 ------------EWIQEKAEATRTGTYTCSN----SNGLTSSIYVFVRDPAKLF-LVGLP 100
Query: 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGT 201
L E + C + S + LPT + + I R
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLC 160
Query: 202 YYCVAENGVGKGTRRNIAVEV----EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA- 256
C A+ ++V + PV++VP+ + C ++
Sbjct: 161 VRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVN 220
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316
+W+K + Q ++ H + T+ + + G ++C A N G++
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV 280
Query: 317 TVEL 320
T L
Sbjct: 281 TTTL 284
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 1e-40
Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 19/195 (9%)
Query: 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD-TAS 93
+ G TVEL C+ + W ++ K+ + R R
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPV 153
+ L++K+++ D+ Y C+V ++ EV L V SD + +GQ +
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEV----EDQ-KEEVQLLVFGLTANSDTH-----LLQGQSL 115
Query: 154 QLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213
L + +P + R + G + L + Q+ +D GT+ C K
Sbjct: 116 TLTLESPPGSSPSVQCRSPRGKNIQGGKT------LSVSQLELQDSGTWTCTVLQNQKK- 168
Query: 214 TRRNIAVEV-EFAPV 227
I + V F
Sbjct: 169 VEFKIDIVVLAFQKA 183
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 96.2 bits (239), Expect = 8e-24
Identities = 29/196 (14%), Positives = 57/196 (29%), Gaps = 47/196 (23%)
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPT--GGSIYRGS---------------- 187
+ +G V+L C A + + W+ N + G + +G
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 188 ---ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD 244
L I + ED TY C E+ K + + + + GQ+L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQ--KEEVQLLVFGLTANSDTHL---LQGQSLT---- 116
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L P++ + + T+ V +E + G++
Sbjct: 117 LTLESPPGSSPSVQCRSPRGKNIQGGK-----------------TLSVSQLELQDSGTWT 159
Query: 305 CRAANKLGTSEKTVEL 320
C E +++
Sbjct: 160 CTVLQNQKKVEFKIDI 175
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 7e-40
Identities = 71/341 (20%), Positives = 109/341 (31%), Gaps = 62/341 (18%)
Query: 21 AQRTPTISYISQEQIK-DIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSL 78
A P QEQ+ G VEL C W+K + +
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGT-------GLVPSERV 56
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--------------------IIG 118
++ L V + D+G Y C+
Sbjct: 57 LV-------------GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD 103
Query: 119 INNKISAEVDLQVRRPPVIS---DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175
+ + AE P + + L V V+ C A G+PTP ISW +
Sbjct: 104 EDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 163
Query: 176 ILPT---GGSIYR--GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE----FAP 226
GG R L + + DRG Y CV EN G R+ ++V P
Sbjct: 164 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRP 222
Query: 227 VITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKE---DTQQVLTNNQHYSISHFATA 282
++ P A+ D++ C V + P I W+K + +V + Y
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 283 DEFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVEL 320
TD + V+++ + G Y C A N +G S + L
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 117 bits (293), Expect = 5e-30
Identities = 41/236 (17%), Positives = 71/236 (30%), Gaps = 34/236 (14%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKI 191
P LV G V+L C GG P W ++ ++P+ + L++
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQV 65
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVE--------------------VEFAPVITVP 231
+ ED G Y C ++ V AP T P
Sbjct: 66 LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP 125
Query: 232 ---KPRLGQALQYDM-DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTD 287
+L + C P P+I W+K ++ ++ I
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNG-REFRGEHRIGGIKL-----RHQQ 179
Query: 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNV 343
++ + ++ G+Y C NK G+ +T L + P + N
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL---DVLERSPHRPILQAGLPANQ 232
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 1e-22
Identities = 41/222 (18%), Positives = 70/222 (31%), Gaps = 47/222 (21%)
Query: 19 TTAQRTPTISYISQEQIKDI----GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLP 71
P + + K + TV +C A P + W+K R
Sbjct: 114 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP---AAGNPTPSISWLKNGRE------- 163
Query: 72 ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDL 129
R ++L+++ + +D G Y C V G + + +D+
Sbjct: 164 --------FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ-TYTLDV 214
Query: 130 QVRRP--PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA------------ 175
R P P++ + G V+ C P I W +
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274
Query: 176 --ILPTGGSIYR---GSILKIPQITKEDRGTYYCVAENGVGK 212
+L T G+ +L + +T ED G Y C+A N +G
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF 316
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 17/138 (12%), Positives = 31/138 (22%), Gaps = 21/138 (15%)
Query: 222 VEFAPVITVPKPR-----LGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYS 275
P + G A++ L C P VW+K+ L ++
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVE----LSCPPPGGGPMGPTVWVKDG--TGLVPSERVL 57
Query: 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
+ ++V+ G+Y CR +
Sbjct: 58 VG---------PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGED 108
Query: 336 ELLPLRNVNMAVIFAEQP 353
E A +
Sbjct: 109 EAEDTGVDTGAPYWTRPE 126
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 9e-40
Identities = 60/342 (17%), Positives = 118/342 (34%), Gaps = 43/342 (12%)
Query: 13 FFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI 72
+++ + + + S +G + L C+ + + + + + +
Sbjct: 213 MYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQH--- 269
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132
L+ RD + + TL + + +D G Y C G+ K ++V
Sbjct: 270 ---KKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVH 325
Query: 133 RPPVISDNST--RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK 190
P ++ S + + G+ V++ G+P P I W + N L + +I G +L
Sbjct: 326 EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLT 384
Query: 191 IPQITKEDRGTYYCVAENGVGKGTR-RNIAVEVEFAPVITVPKPRLGQALQYDMD----L 245
I ++++ D G Y + N + K + +++ V P I K + Y L
Sbjct: 385 IMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQI-GEKSLISPVDSYQYGTTQTL 443
Query: 246 ECHVEAYPPPA-IVWIKEDTQQVLTNNQH--------------------------YSISH 278
C V A PPP I W + ++ + +
Sbjct: 444 TCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQ 503
Query: 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
FA + T ++ Y C A NK+G E+ +
Sbjct: 504 FALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF 545
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-35
Identities = 56/346 (16%), Positives = 109/346 (31%), Gaps = 63/346 (18%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPISTGSSLI- 79
+ S IS G T L C+V YA P + W + + +
Sbjct: 422 QIGEKSLISPVDSYQYGTTQTLTCTV-YAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 80 ----------------IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINN 121
I ++ + + + Y+C+ + +G
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG--- 537
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181
+ + V R P I+ + +E + V L C A ++W + LP
Sbjct: 538 RGERVISFHVTRGPEIT--LQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHV 595
Query: 182 SIY------------------------RGSILKIPQITKEDRGTYYCVAENGVGKG---T 214
I+++ + +D+G Y C+A++ K
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655
Query: 215 RRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274
R + V AP IT ++ +++ C PPP I+W K++ + L +
Sbjct: 656 VRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDN--ETLVEDSGI 713
Query: 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + + + K G Y C+A + LG ++
Sbjct: 714 VLKD-------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 6e-35
Identities = 43/316 (13%), Positives = 80/316 (25%), Gaps = 45/316 (14%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P +S T+++ C Q + W+ +
Sbjct: 32 PRLSIQKDILTIKANTTLQITCRGQR----DLDWLW-------------PNNQSGSEQRV 74
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVI---- 137
TL + + D G Y+C V +Q R P I
Sbjct: 75 EVTECSDGLFCKTLTIPKVIGNDTGAYKCFY----RETDLASVIYVYVQDYRSPFIASVS 130
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQI 194
+ + ++ + V + C R G+ IP
Sbjct: 131 DQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY 190
Query: 195 TKEDRGTYYCVAENGVGKGTRR---NIAVEVEFAPVITVPKPRL----GQALQYDMDLEC 247
G +C A+ + V V+ P + G+ L L C
Sbjct: 191 MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLV----LNC 246
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---GSYI 304
I + E + + + + + +TI+ G Y
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 306
Query: 305 CRAANKLGTSEKTVEL 320
C A++ L T + + +
Sbjct: 307 CAASSGLMTKKNSTFV 322
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-33
Identities = 61/350 (17%), Positives = 91/350 (26%), Gaps = 83/350 (23%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G V + YP + W K PL S I+
Sbjct: 345 GERVRIPAKYL---GYPPPEIKWYKNGI-----PLE-----------SNHTIKAG----- 380
Query: 96 YTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDNSTRSLV--VSEGQP 152
+ L + ++ E D G Y + I K S V L V PP I + S S V G
Sbjct: 381 HVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTT 440
Query: 153 VQLECFAGGHPTPR-ISWRRENNAILPTGGSIYR-------------------------- 185
L C P P I W + S
Sbjct: 441 QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500
Query: 186 -----------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR 234
++ + Y C A N VG+ R I+ V P IT+ P
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR-GERVISFHVTRGPEITLQ-PD 558
Query: 235 LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVIT 294
+ Q + L C + + W K Q + + D + +
Sbjct: 559 MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFS 618
Query: 295 IEKRQY-------------GSYICRAANKLGTSEKTVELFESIIPVCPPQ 331
G Y+C A ++ V +++ P
Sbjct: 619 NSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 4e-25
Identities = 25/240 (10%), Positives = 54/240 (22%), Gaps = 26/240 (10%)
Query: 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR 166
+ C S + P +S L + +Q+ C G
Sbjct: 8 AVALWLCVE----TRAASVGLPSVSLDLPRLSIQKD-ILTIKANTTLQITCR--GQRDLD 60
Query: 167 ISWRRENNAILP-----TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221
W + L IP++ D G Y C + + V+
Sbjct: 61 WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLA-SVIYVYVQ 119
Query: 222 VEFAPVITVPKPRLGQALQY-----DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSI 276
+P I + G + + C + + ++ + + S
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW 179
Query: 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
+ + G C A + + + + +
Sbjct: 180 DS--------KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPS 231
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 8e-08
Identities = 17/139 (12%), Positives = 43/139 (30%), Gaps = 12/139 (8%)
Query: 200 GTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVW 259
+ CV G +++++ P +++ K L + + C + + W
Sbjct: 10 ALWLCVETRAASVGLPS-VSLDL---PRLSIQKDILTIKANTTLQITCRGQ----RDLDW 61
Query: 260 IKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319
+ + Q + +D T+ + + G+Y C S V
Sbjct: 62 LWPNNQSGSEQRVEVTE----CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVY 117
Query: 320 LFESIIPVCPPQTQPSELL 338
+ + P + ++
Sbjct: 118 VQDYRSPFIASVSDQHGVV 136
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-39
Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 14/189 (7%)
Query: 130 QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---G 186
++ + PVI+ ++ + C +P P ISW R I G
Sbjct: 3 KLPKAPVITT-PLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246
+L I + D G Y C A NGVG A++V+ P IT P + L
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLP 121
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C P P++ WIK D L N ++ ++R+ ++K G Y C
Sbjct: 122 CTTMGNPKPSVSWIKGD--SALRENSRIAVL--------ESGSLRIHNVQKEDAGQYRCV 171
Query: 307 AANKLGTSE 315
A N LGT+
Sbjct: 172 AKNSLGTAY 180
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-33
Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 25/206 (12%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSL 78
+ P I+ + + C+ + YP + W + +
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCA---VESYPQPEISWTRN-------------KILI 48
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
+ D+R++IR + L + ++++D G Y C G+ + + LQV+ P I+
Sbjct: 49 KLFDTRYSIRENGQ----LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT 104
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIYRGSILKIPQITKE 197
++ + EG L C G+P P +SW + ++A+ ++ L+I + KE
Sbjct: 105 RP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE 163
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEVE 223
D G Y CVA+N +G + + +EVE
Sbjct: 164 DAGQYRCVAKNSLGTAYSKLVKLEVE 189
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 3e-39
Identities = 61/321 (19%), Positives = 106/321 (33%), Gaps = 55/321 (17%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
T + P ++QI GG C A P V W K +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQ---ATGDPKPRVTWNKKGK------------- 45
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQ-ETDAGYYRCQVIIGINN---KISAEVDLQVR 132
+ RF S+ L ++ ++ D Y C N +I+ L V
Sbjct: 46 --KVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA----QNSVGEITVHAKLTVL 99
Query: 133 RPPVIS------DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----S 182
R + D + VV + + C A G+P P I+W ++ + P+
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159
Query: 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV---EFAPVITVPKPRLGQAL 239
R L+I + D+G Y CVA N G + V AP ++
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP 219
Query: 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299
++++ C P P + W++ + LT + + + ++
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGA--EDLTPEDDMPVG---------RNVLELTDVKDS- 267
Query: 300 YGSYICRAANKLGTSEKTVEL 320
+Y C A + LG E ++
Sbjct: 268 -ANYTCVAMSSLGVIEAVAQI 287
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 6e-30
Identities = 42/214 (19%), Positives = 71/214 (33%), Gaps = 22/214 (10%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----- 185
PP + + G C A G P PR++W ++ +
Sbjct: 3 GEEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 186 GSILKIPQI-TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY--- 241
G++L+I + T D Y CVA+N VG+ + + V + P + Q
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 242 ----DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297
+ C P P I W K D V + + I + +++ + E+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFK-DFLPVDPSASNGRIK------QLRSGALQIESSEE 173
Query: 298 RQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ 331
G Y C A N G + + P+
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR 207
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-26
Identities = 43/213 (20%), Positives = 71/213 (33%), Gaps = 29/213 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I Q ++ + T + C+ A P + W K P+ S
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCA---ASGNPDPEITWFKDFL-----PVDPSA------S 154
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRR-PPVIS 138
+ R + L ++ +ETD G Y C G+ A + ++V+ P S
Sbjct: 155 NGRIKQ-----LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFS 209
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKED 198
S + G V + C A G P P + W + L + G + +D
Sbjct: 210 ILPM-SHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTPEDDMPVGR-NVLELTDVKD 266
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
Y CVA + +G + V+ P
Sbjct: 267 SANYTCVAMSSLGV-IEAVAQITVKSLPKAGTK 298
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 2e-38
Identities = 50/300 (16%), Positives = 84/300 (28%), Gaps = 50/300 (16%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G + +KC + V W + D ++ + +
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEE---------ENYFPGAEYDGKYLV-----LPS 163
Query: 96 YTLLVKDIQETDA-GYYRCQVI--IGINNKISAEVDLQVRRP------PVISDNSTRSLV 146
L ++++ D Y+C+ + ++SA V P + L
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223
Query: 147 VSEGQPVQLECFAGGHPTPRISWRRE------NNAILPTGGSIYRGSILKIPQITKEDRG 200
+ + L C A G P P W + A++ L I ED G
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI 260
Y CV N VG + V + P C P + W+
Sbjct: 284 KYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 342
Query: 261 KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
K D + + + I D+ G Y C N ++E + EL
Sbjct: 343 K-DGKAIGHSESVLRIESVKKEDK----------------GMYQCFVRNDRESAEASAEL 385
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 51/322 (15%), Positives = 90/322 (27%), Gaps = 43/322 (13%)
Query: 22 QRTPTISYISQEQIK-DIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSS 77
Q+ P +I E++C A P +IW++ D + G
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECK---ASGNPMPEIIWIRSDG----TAVGDVPGLR 53
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137
I D + A QE A Y C + IS +V ++
Sbjct: 54 QISSDGKLVFPPFRAEDY-------RQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYY 106
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGH---PTPRISWRRENNAILPTGG------SIYRGSI 188
V G ++C +SW + G +
Sbjct: 107 EA-DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 165
Query: 189 LKIPQITKED-RGTYYCVAENGVGKGTRRNIAVEV--------EFAPVITVPKPRLGQAL 239
L I ++ ED +Y C ++ + TR + AP + + +
Sbjct: 166 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM 225
Query: 240 Q-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298
+ + L C + +P P+ W K + + T+ +
Sbjct: 226 VAHTISLLCPAQGFPAPSFRWYKFI-EGTTRKQAVVLNDRV----KQVSGTLIIKDAVVE 280
Query: 299 QYGSYICRAANKLGTSEKTVEL 320
G Y+C N +G L
Sbjct: 281 DSGKYLCVVNNSVGGESVETVL 302
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 9e-26
Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 32/236 (13%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSI 188
+ PV T + S ++EC A G+P P I W R + + + + G
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK- 60
Query: 189 LKIPQITKED------RGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKP---RLGQA 238
L P ED Y C+A N G R++ V A G +
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120
Query: 239 LQYDMDLECHVEAY---PPPAIVWIKEDTQQVLTNNQHYSISHFATAD---EFTDTTIRV 292
++C + ++ + W ++ ++ Y + +
Sbjct: 121 AV----IKCLIPSFVADFVEVVSWHTDE-EENYFPGAEYDGKYLVLPSGELHIREVG--- 172
Query: 293 ITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVI 348
+ Y SY CR ++L + ++ P + L + ++
Sbjct: 173 ---PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM 225
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-37
Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 14/202 (6%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------- 185
V +S + + E PV+L C G +PR+ W+ + +
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 186 -----GSILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAVEVEFAPVITVPKPRLGQAL 239
+ + +T+ED GTY C+ G + + V P +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 240 QYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298
L C + PP W K+ + S+ + T + +
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 299 QYGSYICRAANKLGTSEKTVEL 320
G Y C A N GT + +
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAV 203
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-27
Identities = 42/219 (19%), Positives = 61/219 (27%), Gaps = 29/219 (13%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSS 77
A + T+ E V+L C+ + V W T L
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCA---YSGFSSPRVEWKFDQ--GDTTRLVCYNNKI 55
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPV 136
+ R + K + D G Y C V N+ +V L V PP
Sbjct: 56 TASYEDRVTF------LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPS 109
Query: 137 ISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGS-----------IY 184
+ G L C G P +W ++ + S
Sbjct: 110 KP-TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 168
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L ++ D G Y C A NG G + AV +E
Sbjct: 169 TTGELVFDPLSASDTGEYSCEARNGYGT-PMTSNAVRME 206
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 8e-07
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSL 78
P+ ++ IG L CS Q W K +P + S+
Sbjct: 103 IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDG-----IVMPTNPKSTR 157
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
+S + + T L+ + +D G Y C+
Sbjct: 158 AFSNSSYVLNPTTG----ELVFDPLSASDTGEYSCEA 190
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 5e-37
Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 17/203 (8%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---------- 182
+ V + S + V E + ++L C G +PR+ W+ +
Sbjct: 1 KGSVYTAQSD--VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 183 --IYRGSILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAVEVEFAPVITVPKPRLGQAL 239
+ S + +T++D G Y C+ G+ +I + V P +
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI 118
Query: 240 QYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDT-TIRVITIEK 297
L C + PP W K+ + + + ++ + + +
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 298 RQYGSYICRAANKLGTSEKTVEL 320
G Y C+A N GT+ ++
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAA 201
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 1e-28
Identities = 43/222 (19%), Positives = 69/222 (31%), Gaps = 32/222 (14%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
++ + +++L C+ + V W V + S ++
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCT---YSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISD 139
F S+ + + D G Y C V G N + L V PP
Sbjct: 59 RVTF--------SSSGITFSSVTRKDNGEYTCMVSEEGG-QNYGEVSIHLTVLVPPSKPT 109
Query: 140 NSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGSIYR------------G 186
S V+ G L C G P SW ++ ++L R
Sbjct: 110 IS-VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS 168
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228
L +T D G YYC A+NG G R+ A ++ +
Sbjct: 169 GDLIFDPVTAFDSGEYYCQAQNGYGT-AMRSEAAHMDAVELN 209
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 4e-08
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 12/120 (10%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSL 78
T P+ IS IG L CS W K + T +
Sbjct: 100 TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGI-------SMLTADAK 152
Query: 79 IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPV 136
R + + + L+ + D+G Y CQ G + S + V
Sbjct: 153 KTRAFMNS-SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR-SEAAHMDAVELNV 210
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-35
Identities = 50/319 (15%), Positives = 101/319 (31%), Gaps = 65/319 (20%)
Query: 39 GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
V LKC V + I W K +R IS ++D T
Sbjct: 21 ECNVLLKCKVANIKKETHIVWYKDER-------EISVDE-----------KHDFKDGICT 62
Query: 98 LLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
LL+ + + DAG Y + ++ K + + L + + +++
Sbjct: 63 LLITEFSKKDAGIYEVIL---KDDRGKDKSRLKLVDEAFKELM-MEVCKKIALSATDLKI 118
Query: 156 EC----------FAGGHPTPRISWRRENNAILPTG----GSIYRGSILKIPQITKEDRGT 201
+ +++W +AI + G L+I + T D+G
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178
Query: 202 YYCVAENGVGKGTRR-NIAVEV-----------EFAPVITVPKPRLGQALQYDMD----- 244
Y +G + +++ + + A + + R+ L +
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 238
Query: 245 ---LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
L C+V PPP + W+K + + L ++ H ++ + + + G
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNE--KALASDDHCNLKF----EAGRTAYFTINGVSTADSG 292
Query: 302 SYICRAANKLGTSEKTVEL 320
Y NK G+ +
Sbjct: 293 KYGLVVKNKYGSETSDFTV 311
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-30
Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 23/240 (9%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYR-- 185
+ P S V+ V L+C A I W ++ I ++
Sbjct: 2 IDPFTGPHFV--EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG 59
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDL 245
L I + +K+D G Y + ++ GK + + + E + + + D+ +
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCKKIALSATDLKI 118
Query: 246 ECHVEA----------YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295
+ E + W + + + +++
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGV-----TGEQIWLQINEP 171
Query: 296 EKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTS 355
G Y+ + +KTV+L + Q + + N A + P
Sbjct: 172 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 231
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 1e-21
Identities = 35/222 (15%), Positives = 60/222 (27%), Gaps = 45/222 (20%)
Query: 18 LTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGS 76
L + +I+ ++L V Y + V W + + +
Sbjct: 101 LMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRY-------- 151
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR---- 132
R L + + D G Y + VDL +
Sbjct: 152 -----SDRVKTGVT--GEQIWLQINEPTPNDKGKYVM-ELFDGKTGHQKTVDLSGQAYDE 203
Query: 133 -----------------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175
R V+ + + EG+ + L C G P P +SW + A
Sbjct: 204 AYAEFQRLKQAAIAEKNRARVLG-GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 262
Query: 176 ILPTGG-----SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212
+ R + I ++ D G Y V +N G
Sbjct: 263 LASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 2e-35
Identities = 56/338 (16%), Positives = 96/338 (28%), Gaps = 57/338 (16%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSS 77
+R I +S C + + W K D P+ST +
Sbjct: 5 KCKEREEKIILVSSA-----NEIDVRPCPLNPNEHKGTITWYKDD-----SKTPVSTEQA 54
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQV-RR 133
I L + D+G+Y C V N + ++ +
Sbjct: 55 SRIH-----------QHKEKLWFVPAKVEDSGHYYCVV----RNSSYCLRIKISAKFVEN 99
Query: 134 PPVISDNS--TRSLVVSEGQPVQLECF------AGGHPTPRISWRRENNAILPTGGSI-Y 184
P + N+ + L C + P++ W ++ +L
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159
Query: 185 RGSILKIPQITKEDRGTYYCVAEN---GVGKGTRRNIAVEV-----EFAPVITVPKPRLG 236
L + + ++ RG Y C A G R I PVI P
Sbjct: 160 VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETM 219
Query: 237 QALQ-YDMDLECHVEAYPPPAIVWIKEDTQ----QVLTNNQHYSISHFATADEFTDTTIR 291
+ + L C+V W + + +YS+ + A T T+
Sbjct: 220 EVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVL 279
Query: 292 VIT--IEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327
I+ + + C A N G ++L I PV
Sbjct: 280 NISEIESRFYKHPFTCFAKNTHGIDAAYIQL---IYPV 314
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 92.1 bits (228), Expect = 3e-21
Identities = 39/234 (16%), Positives = 73/234 (31%), Gaps = 53/234 (22%)
Query: 16 INLTTAQRTPTISYISQ---EQIKDIGGTVELKCSVQY---AQDYP---VIWMKVDRNKV 66
I+ + P + Y +Q +Q + G L C ++ + W K
Sbjct: 92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDC---- 147
Query: 67 TEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV---IIGINNKI 123
+PL + ++D L+V ++ E G Y C +G I
Sbjct: 148 -KPLLLDNIHFSGVKD--------------RLIVMNVAEKHRGNYTCHASYTYLGKQYPI 192
Query: 124 SAEVDLQV-----RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178
+ ++ PVI + ++ V G +QL C G + W+ + I
Sbjct: 193 TRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 252
Query: 179 TGGSIYRG----------------SILKIPQITKED-RGTYYCVAENGVGKGTR 215
+ ++L I +I + + C A+N G
Sbjct: 253 DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 88.2 bits (218), Expect = 7e-20
Identities = 42/232 (18%), Positives = 74/232 (31%), Gaps = 33/232 (14%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYR----G 186
R +I LV S + C + I+W ++++ + R
Sbjct: 9 REEKII-------LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK 61
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQY--D 242
L ED G YYCV N R I+ + + + Q L D
Sbjct: 62 EKLWFVPAKVEDSGHYYCVVRNSSYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120
Query: 243 MDLECH------VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296
L C E P + W +D + +L +N H+S + V+ +
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQW-YKDCKPLLLDNIHFSGV---------KDRLIVMNVA 170
Query: 297 KRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVI 348
++ G+Y C A+ + + I + + ++ N M V
Sbjct: 171 EKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVD 222
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 6e-35
Identities = 44/312 (14%), Positives = 84/312 (26%), Gaps = 52/312 (16%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
+ T + K + L C + + V W+ D +
Sbjct: 138 RNTLLYTLRRPYFRK-MENQDALVCISESVPEPIVEWVLCD------------SQGESCK 184
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
+ A+ + E RC + + + + + + P +
Sbjct: 185 EESPAVVKKEEKV--------LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ 236
Query: 142 TRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILP----------TGGSIYRGSILK 190
L + G+P+ + C A + ++W EN A+ T ++ R
Sbjct: 237 ---LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY--DMDLECH 248
+ + + D G Y C + + + V + I + +
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR 349
Query: 249 VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308
+AYP W + Q + +I K Q G YI A
Sbjct: 350 FKAYPQIRCTWTFSR--KSFPCEQKGLDN---------GYSISKFCNHKHQPGEYIFHAE 398
Query: 309 NKLGTSEKTVEL 320
N K L
Sbjct: 399 NDDAQFTKMFTL 410
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 2e-33
Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 36/257 (14%)
Query: 102 DIQETDAGYYRCQVIIGINNKISA----------------EVDLQVRRPPVISDNSTRSL 145
+ D +C +I NN S L+ + + + ++
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE--AAAV 58
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGTY 202
V + L+ W +++++ + I ++T+ G Y
Sbjct: 59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKE 262
++ T V + + T+ +P + ++ L C E+ P P + W+
Sbjct: 119 LLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLC 176
Query: 263 DTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322
D+Q + ++ + + C A N+LG + +
Sbjct: 177 DSQGESCKEESPAVVKKEE-----------KVLHELFGTDIRCCARNELGRECTRLFTID 225
Query: 323 SIIPVCPPQTQPSELLP 339
P T P L
Sbjct: 226 LNQT--PQTTLPQLFLK 240
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 127 bits (319), Expect = 4e-33
Identities = 53/355 (14%), Positives = 112/355 (31%), Gaps = 42/355 (11%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIR 81
++ Y + D+ ++ L+ V A +W+ + +P
Sbjct: 47 QSSGTVYEAAAVEVDVSASITLQVLVD-APGNISCLWVFKHSSLNCQP------------ 93
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN---KISAEVDLQVRRPPVIS 138
R ++++ + ET AG Y + + + + +R + +
Sbjct: 94 HFDLQNRGVV-----SMVILKMTETQAGEYLLFI----QSEATNYTILFTVSIRNTLLYT 144
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKED 198
E Q L C + P P + W ++ + + +
Sbjct: 145 -LRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELF 202
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL--GQALQYDMDLECH-VEAYPPP 255
C A N +G+ R +++ P T+P+ L G+ L + C V
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLW----IRCKAVHVNHGF 258
Query: 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVIT-IEKRQYGSYICRAANKLGTS 314
+ W E+ + L ++ +S ++T ++ + + G Y C ++ S
Sbjct: 259 GLTWELEN--KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Query: 315 EKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPT---SWEPQRKQLNCS 366
V + E ++ E+ +V F P +W RK C
Sbjct: 317 A-LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 28/212 (13%), Positives = 57/212 (26%), Gaps = 17/212 (8%)
Query: 17 NLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTG 75
L T T + +G + ++C + + W ++ L
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENK-----ALEEGNY 274
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + T V + D GYY C + S + +
Sbjct: 275 FEMSTYSTNR-----TMIRILFAFVSSVARNDTGYYTCSS----SKHPSQSALVTIVEKG 325
Query: 136 VI-SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQI 194
I + NS+ + + + +P R +W + + G +
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCN 385
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
K G Y AEN + + + +
Sbjct: 386 HKHQPGEYIFHAENDDAQ-FTKMFTLNIRSGT 416
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 6e-35
Identities = 50/311 (16%), Positives = 95/311 (30%), Gaps = 41/311 (13%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
++ S ++ +IW +++ + + + ++R +
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDR-----DLEEPINFRLPENRISKE------KDV 80
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR---SLVVSEGQPVQ 154
L + D G Y C ++ L+V + ++ + + E +
Sbjct: 81 LWFRPTLLNDTGNYTC-MLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQR 139
Query: 155 LEC-----FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVA--- 206
+ C + P I+W I I G L + G Y CV
Sbjct: 140 ITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYP 199
Query: 207 ENGVGKGTRRNIAVEVEFAPVITVPKPRLGQ---------ALQYDMDLECHV----EAYP 253
ENG R + V+V +P VP P + ++ + C V
Sbjct: 200 ENGRTFHLTRTLTVKVVGSPKNAVP-PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDS 258
Query: 254 PPAIVWIKEDTQQVLTNNQHY---SISHFATADEFTDTTIRVITIEKRQYG-SYICRAAN 309
+ W + + SISH T DE + + + SY+C A +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318
Query: 310 KLGTSEKTVEL 320
G K ++
Sbjct: 319 AKGEVAKAAKV 329
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 3e-17
Identities = 39/256 (15%), Positives = 67/256 (26%), Gaps = 64/256 (25%)
Query: 16 INLTTAQRTP---TISYISQEQIKDIGGTVELKCSVQ--YAQDYP---VIWMKVDRNKVT 67
L Q+ + + ++ G + C Y + W
Sbjct: 109 FPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN 168
Query: 68 EPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---IS 124
I G +L ++ G Y C V N + ++
Sbjct: 169 FNNVIPEGMNLSFLI--------------------ALISNNGNYTCVVTYPENGRTFHLT 208
Query: 125 AEVDLQV------RRPPVISD-NSTRSLVVSEGQPVQLECFA----GGHPTPRISWRREN 173
+ ++V PPVI N G+ + + C + W +
Sbjct: 209 RTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDG 268
Query: 174 NAI--------------LPTGGSIYRGSILKIPQITKEDRGT-YYCVAENGVGKGTRRNI 218
R IL I ++T ED Y C A + G+ +
Sbjct: 269 KKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGE-VAKAA 327
Query: 219 AVEVEFAPVITVPKPR 234
V+ + VP PR
Sbjct: 328 KVKQK------VPAPR 337
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 4e-16
Identities = 30/232 (12%), Positives = 57/232 (24%), Gaps = 47/232 (20%)
Query: 138 SDNSTRSLVVSEGQPVQLEC-----------FAGGHPTPRISWRRENNAILPTGGSIYR- 185
++ R + V E +P +++C + W +R
Sbjct: 10 GLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRL 69
Query: 186 --------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQ 237
+L D G Y C+ N ++ +EV +L
Sbjct: 70 PENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPV 128
Query: 238 ALQYD---------MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288
Y +++ + + P I W + N +
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC--YKIQNFNNVIPE---------GM 177
Query: 289 TIRVITIEKRQYGSYICRAANKLG------TSEKTVELFESIIPVCPPQTQP 334
+ + G+Y C T TV++ S PP
Sbjct: 178 NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHS 229
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-34
Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 17/196 (8%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILPTGGSIYR------ 185
R + +S G+ C G ISW N L
Sbjct: 1 RVLQVD-IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 186 -GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD 244
S L I +D G Y CV G + + V++ + D
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
+ C V + PP I+W + +L + + + ++ +++ I+K G+Y
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--------LSNNYLQIRGIKKTDEGTYR 171
Query: 305 CRAANKLGTSEKTVEL 320
C ++
Sbjct: 172 CEGRILARGEINFKDI 187
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-34
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 19/205 (9%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
R + + + +G + C V A+D + W + G L
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN------------GEKLSPN 48
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
R ++ ++ S TL + + DAG Y+C V + A V++++ + + +
Sbjct: 49 QQRISVVWNDDDS-STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKED 198
T EG+ + C P I W+ + ++ + + L+I I K D
Sbjct: 108 T-PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166
Query: 199 RGTYYCVAENGVGKG-TRRNIAVEV 222
GTY C ++I V V
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIV 191
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-05
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 25/120 (20%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPI 72
+N+ Q+ Q G + C V +IW R + +
Sbjct: 93 VNVKIFQK-LMFKNAPTPQEFKEGEDAVIVCDV---VSSLPPTIIWKHKGR-----DVIL 143
Query: 73 STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQV 131
D RF + S L ++ I++TD G YRC+ I ++ + V
Sbjct: 144 KK-------DVRFIV-----LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-34
Identities = 49/314 (15%), Positives = 94/314 (29%), Gaps = 34/314 (10%)
Query: 25 PTISYIS-QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS 83
P+ + + +G KC +D + D++ V +
Sbjct: 29 PSCMFGGTMNDMAALGEPFSAKCPP--IEDSLLSHRYNDKDNVVNWE----------KIG 76
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAG-YYRCQVIIGINNKISAEVDLQVRRPPVISDNST 142
+ + L + + D+ Y C V + + V +R+PP T
Sbjct: 77 KTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI-PET 135
Query: 143 RSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYR-GSILKIPQITKEDRG 200
L + + L C I+W + N ++ G + G L I ED G
Sbjct: 136 YELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSG 195
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPK---------PRLGQALQYDMDLECHVEA 251
Y C + +I V + + P++ + ++ C +
Sbjct: 196 RYDCYVHYDDV-RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVS 254
Query: 252 YP----PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS-YICR 306
I W + + YSI ++ T+ T+ + + G+ Y CR
Sbjct: 255 TSLLVDDVLIDWENPSGWIIGLDFGVYSILT--SSGGITEATLYFENVTEEYIGNTYTCR 312
Query: 307 AANKLGTSEKTVEL 320
N T +
Sbjct: 313 GHNYYFDKTLTTTV 326
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-25
Identities = 40/226 (17%), Positives = 70/226 (30%), Gaps = 23/226 (10%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR---------ISWRRENNAILPTGGSIY 184
P T + + + G+P +C ++W + P +
Sbjct: 28 NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK 87
Query: 185 RGSILKIPQITKEDRGTYY-CVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDM 243
G L I T D Y C G + + + P LG +Y +
Sbjct: 88 NGD-LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146
Query: 244 DLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
DL C + A I W K + Q+++ + YS S + + E G
Sbjct: 147 DLYCGILYAKHYNNITWYK-NNQELIIDGTKYSQS---------GQNLIIHNPELEDSGR 196
Query: 303 YICRAANKLGTSEKTVELFESIIP-VCPPQTQPSELLPLRNVNMAV 347
Y C + + + I V P Q +L+ +N+ +
Sbjct: 197 YDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTI 242
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 91.4 bits (226), Expect = 8e-21
Identities = 36/230 (15%), Positives = 70/230 (30%), Gaps = 42/230 (18%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPIST 74
I + ++ P+ + E ++L C + YA+ Y I W K ++ +
Sbjct: 120 IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ-------ELII 172
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-------ISAEV 127
+ + + L++ + + D+G Y C V +
Sbjct: 173 DGTKYSQSGQ------------NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL 220
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP----RISWRRENNAILPTGGSI 183
+ + + V+ G+P + C A I W + I+ +
Sbjct: 221 TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGV 280
Query: 184 Y---------RGSILKIPQITKEDRG-TYYCVAENGVGKGTRRNIAVEVE 223
Y + L +T+E G TY C N V +E
Sbjct: 281 YSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD-KTLTTTVVLE 329
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 5e-34
Identities = 52/301 (17%), Positives = 83/301 (27%), Gaps = 60/301 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDS 83
I+ TV L C V + W ST S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGT-----ATQTSTPS------- 49
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR 143
+ D+G YRCQ + S + L++ R ++ S+R
Sbjct: 50 --------------YRITSASVNDSGEYRCQR---GLSGRSDPIQLEIHRGWLLLQVSSR 92
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
V +EG+P+ L C A + + R A + S L I + GTY
Sbjct: 93 --VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF----KFFHWNSNLTILKTNISHNGTY 146
Query: 203 YCVAENGVGKGTRR-NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIK 261
+C + ++ V+ F + + L C + + +
Sbjct: 147 HCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLY 206
Query: 262 ------EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
T + + Y I D G Y C AA + G
Sbjct: 207 FSFYMGSKTLRGRNTSSEYQILTARREDS----------------GLYWCEAATEDGNVL 250
Query: 316 K 316
K
Sbjct: 251 K 251
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 5e-21
Identities = 27/206 (13%), Positives = 57/206 (27%), Gaps = 32/206 (15%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQ 193
VI+ + V + + V L C P W A + S +I
Sbjct: 2 AVITLQPP-WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------YRITS 54
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYD-MDLECHVEA- 251
+ D G Y C + R+ +++E + + + + + L CH
Sbjct: 55 ASVNDSGEYRCQRGL-----SGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKD 109
Query: 252 YPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310
+++ + + N + +I + G+Y C K
Sbjct: 110 KLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHN----------------GTYHCSGMGK 153
Query: 311 LGTSEKTVELFESIIPVCPPQTQPSE 336
+ + + + P
Sbjct: 154 HRYTSAGISVTVKELFPAPVLNASVT 179
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 2e-20
Identities = 36/188 (19%), Positives = 63/188 (33%), Gaps = 30/188 (15%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + L+C +D V + RN + +S L
Sbjct: 97 GEPLALRCHA--WKDKLVYNVLYYRNG--KAFKFFHWNS-------------------NL 133
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR---RPPVISDNSTRSLVVSEGQPVQL 155
+ + G Y C + G + SA + + V+ PV++ ++ + + EG V L
Sbjct: 134 TILKTNISHNGTYHCSGM-GKHRYTSAGISVTVKELFPAPVLN--ASVTSPLLEGNLVTL 190
Query: 156 ECFAGGHP-TPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
C P + T S +I +ED G Y+C A G
Sbjct: 191 SCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVL 250
Query: 215 RRNIAVEV 222
+R+ +E+
Sbjct: 251 KRSPELEL 258
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 3e-05
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 22/111 (19%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD 82
P ++ + + G V L C + P + + ++ L SS
Sbjct: 170 PAPVLNASVTSPLLE-GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS----- 223
Query: 83 SRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQV 131
+ + D+G Y C+ G K S E++LQV
Sbjct: 224 --------------EYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 7e-34
Identities = 42/232 (18%), Positives = 72/232 (31%), Gaps = 50/232 (21%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
R I+ + + G V+L C A +P W K+++ +P S
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCR---ATGHPFVQYQWFKMNK-----EIPNGNTS 65
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
LI + DAG+Y C+V + S L V P
Sbjct: 66 ELIFNA--------------------VHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPE 105
Query: 137 ISDNST--------------RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182
S S + G + L+C A G P P W + +
Sbjct: 106 SFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-- 163
Query: 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR 234
+ +P + E +GTY+C N + + + ++ + P +
Sbjct: 164 ---KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNK 212
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-32
Identities = 43/234 (18%), Positives = 70/234 (29%), Gaps = 39/234 (16%)
Query: 117 IGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI 176
+G ++ V R I+ + S V GQ V+L C A GHP + W + N I
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI 59
Query: 177 LPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP--------VI 228
S L + +D G Y C N + ++V P +
Sbjct: 60 -----PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114
Query: 229 TVPKPRLGQALQ-------YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281
+ K ++ + L+C P P W K + + Y + +
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDL 174
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
+ G+Y C N + + E II P
Sbjct: 175 EHQ----------------GTYWCHVYNDRDSQDSKK--VEIIIDELNNLGHPD 210
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 6e-05
Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 33/130 (25%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
I Q G T+ L+C A P W K + PL T ++
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCV---AVGSPIPHYQWFKNEL-----PLTHETKKLYMVP 170
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
+ G Y C V +++ S +V++ + +
Sbjct: 171 Y--------------------VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG--H 208
Query: 142 TRSLVVSEGQ 151
+ + Q
Sbjct: 209 PDNKEQTTDQ 218
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-33
Identities = 48/189 (25%), Positives = 70/189 (37%), Gaps = 18/189 (9%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITK 196
R+L V L C GHP P + W R+ I+ G L I +T
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD 71
Query: 197 EDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-----DMDLECHVEA 251
+D Y A N G ++EVE I +PK G + + ++
Sbjct: 72 DDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG 130
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
P P I W K ++ NN HY + T + + + G Y+ A N+
Sbjct: 131 KPDPVITWQKGQ--DLIDNNGHYQVIV--TRSFTSLVFPNGVERKDA--GFYVVCAKNRF 184
Query: 312 GTSEKTVEL 320
G +KTVEL
Sbjct: 185 GIDQKTVEL 193
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-24
Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 41/216 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P + L C V +P V W + + II
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVT---GHPKPIVKWYRQGKE--------------IIA 47
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVIS 138
D + + L++ + + DA Y+ + N+ +S L+V P I
Sbjct: 48 DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA----TNQGGSVSGTASLEVEVPAKIH 103
Query: 139 ----DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGS 187
++ G+ V ++ G P P I+W++ + I G S S
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT--S 161
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
++ + ++D G Y A+N G ++ + ++V
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVA 196
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 4e-33
Identities = 41/180 (22%), Positives = 62/180 (34%), Gaps = 23/180 (12%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITK 196
L VS+GQPV+L C G P I W ++ + L + + +
Sbjct: 10 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 69
Query: 197 EDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA 256
D G Y+C E+G + + + VE P TV L L C P P
Sbjct: 70 SDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPV 129
Query: 257 -IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
IVW + T ++ S+ + V + Q + C A N G +
Sbjct: 130 TIVWWR-GTTKIGGPAPSPSV-------------LNVTGVT--QSTMFSCEAHNLKGLAS 173
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 9e-30
Identities = 46/204 (22%), Positives = 70/204 (34%), Gaps = 27/204 (13%)
Query: 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLII 80
+ + G V+L CS + + W+K +++
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCS---VEGMEEPDIQWVK--------------DGAVVQ 44
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
+ I L +K ++ +DAG Y CQV G +IS V L V P +
Sbjct: 45 NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE 104
Query: 141 STRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDR 199
+ L V P QL C A G P P I W R I S+L + +
Sbjct: 105 P-KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA---PSPSVLNVTGV--TQS 158
Query: 200 GTYYCVAENGVGKGTRRNIAVEVE 223
+ C A N G + R V ++
Sbjct: 159 TMFSCEAHNLKGLASSRTATVHLQ 182
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 5e-33
Identities = 48/343 (13%), Positives = 96/343 (27%), Gaps = 65/343 (18%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQY----AQDYP---VIWMKVDRNKVTEPLP 71
A+ + + + G V L+C A P + W K D
Sbjct: 13 GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKND-----SART 67
Query: 72 ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVD 128
+ + + L + + D+G Y C N ++
Sbjct: 68 VPGEEETRMW-----------AQDGALWLLPALQEDSGTYVCTT----RNASYCDKMSIE 112
Query: 129 LQV-RRPPVISDNSTRSLVVSEGQPVQLEC-----FAGGHPTPRISWRRENNAILPTGG- 181
L+V + +++ L C F +I W +++ +
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK 172
Query: 182 --SIYRGSILKIPQITKEDRGTYYCVAENGVGKGT---RRNIAVEV-----EFAPVITVP 231
S+ + L + + ED G Y CV R+I + + E PVI P
Sbjct: 173 FLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISP 232
Query: 232 KP----RLGQALQYDMDLECHVEA---YPPPAIVWIKEDTQQVLTNNQHYSIS------H 278
LG L + C V P ++W + + + ++ +
Sbjct: 233 LKTISASLGSRLT----IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 279 FATADEFTDTTIRVITIEKRQYGS-YICRAANKLGTSEKTVEL 320
+ + + + + + + C N L +
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-26
Identities = 44/249 (17%), Positives = 77/249 (30%), Gaps = 34/249 (13%)
Query: 124 SAEVDLQVRRPPVISDNST------RSLVVSEGQPVQLEC-------FAGGHPTPRISWR 170
+ LQ + + + EG+PV L C +A P ++W
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 171 RENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
+ ++A G R L + +ED GTY C N + +I + V
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENT 119
Query: 227 VITVPKPRLGQALQYDMD-------LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279
+P Q L L I W K D+ + +N+ +
Sbjct: 120 DAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSLLLDKDNEKFLS--- 175
Query: 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL-FESIIPVCPPQTQPSELL 338
T + V + G Y C + + E I +T P +
Sbjct: 176 ----VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIIS 231
Query: 339 PLRNVNMAV 347
PL+ ++ ++
Sbjct: 232 PLKTISASL 240
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 3e-21
Identities = 48/236 (20%), Positives = 80/236 (33%), Gaps = 53/236 (22%)
Query: 16 INLTTAQRTP-TISYISQEQIKDIGGTVELKCSVQ--YAQDYP---VIWMKVDRNKVTEP 69
I L + T + +IS QI + + L C + +D + W K
Sbjct: 111 IELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS-----LL 165
Query: 70 LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAE 126
L L +R + LLV D+ DAGYYRC + + I+
Sbjct: 166 LDKDNEKFLSVRGT------------THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS 213
Query: 127 VDLQVR-----RPPVISDNSTRSLVVSEGQPVQLEC---FAGGHPTPRISWRRENNAILP 178
++L+++ PVI + +++ S G + + C G P + W N+ +
Sbjct: 214 IELRIKKKKEETIPVII-SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272
Query: 179 -----------------TGGSIYRGSILKIPQITKEDRGTYY-CVAENGVGKGTRR 216
Y L +T+ED + CV N + T R
Sbjct: 273 SAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 1e-32
Identities = 36/295 (12%), Positives = 81/295 (27%), Gaps = 36/295 (12%)
Query: 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTA 92
E + ++ T L CS PV+W ++ + E G+
Sbjct: 9 ELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTF--------------- 49
Query: 93 SSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR---RPPVISDNSTRSLVV 147
+ L + ++ D G Y C G+ + + V + +D + +
Sbjct: 50 --SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFL 107
Query: 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAE 207
+E + + C P ++ + + ++ I + +Y C
Sbjct: 108 TEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGI-----FEDRSYICKTT 161
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY--DMDLECHVEAYPPPAIVWIKEDTQ 265
G + V I V + ++ ++ L C V W +
Sbjct: 162 IGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE 221
Query: 266 QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + + E G+Y C + + +
Sbjct: 222 SGRLVEPVTDFLL--DMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 8e-19
Identities = 24/206 (11%), Positives = 54/206 (26%), Gaps = 31/206 (15%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG---SILKIPQITKE 197
LV++ L C + + W R + G S+L + +T
Sbjct: 6 PGPELVLNVSSTFVLTCSG----SAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEVEFAP-----VITVPKPRLGQALQY-DMDLECHVEA 251
D G Y+C + G T + + + + + ++ + C V
Sbjct: 62 DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD 121
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
P + ++ L + ++ SYIC+
Sbjct: 122 -PQLVVTLHEKKGDVALPVPYDHQRGFSGIFED----------------RSYICKTTIGD 164
Query: 312 GTSEKTV-ELFESIIPVCPPQTQPSE 336
+ ++ + +
Sbjct: 165 REVDSDAYYVYRLQVSSINVSVNAVQ 190
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 84.8 bits (209), Expect = 1e-18
Identities = 33/195 (16%), Positives = 51/195 (26%), Gaps = 37/195 (18%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
+ + C V Q V + + LP+
Sbjct: 110 ITEITIPCRVTDPQ-LVVTLHEKKGDV---ALPVPYDHQRGF------------------ 147
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS-DNSTRSLVVSEGQPVQLEC 157
+ Y C+ IG S + + I+ + VV +G+ + L C
Sbjct: 148 ----SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMC 203
Query: 158 FAGGHPTPRISWRRENNAI---------LPTGGSIYRGSILKIPQITKEDRGTYYCVAEN 208
G+ W + SIL IP ED GTY C
Sbjct: 204 IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTE 263
Query: 209 GVGKGTR-RNIAVEV 222
V + I + V
Sbjct: 264 SVNDHQDEKAINITV 278
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 13/117 (11%), Positives = 35/117 (29%), Gaps = 12/117 (10%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
+S + + + G + L C V + W + + + ++
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE---SGRLVEPVTDFLLDMPY 238
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDN 140
L + + D+G Y C V + +++ +++ V +
Sbjct: 239 --------HIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHHH 287
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 1e-32
Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 22/189 (11%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG----GSIYRGSILKIPQITKED 198
+ + G+ QL C G P P I W R ++ + S R L + +ED
Sbjct: 15 KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQED 74
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP-------RLGQALQYDMDLECHVEA 251
G Y C+A N VG+ + + ++ P P +G L+ L
Sbjct: 75 EGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR----LHVMYIG 129
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
P PA+ W ++L N+++ +I + +T ++ + + G Y + +N
Sbjct: 130 RPVPAMTWFHGQ--KLLQNSENITIE---NTEHYTHLVMKNVQRKTHA-GKYKVQLSNVF 183
Query: 312 GTSEKTVEL 320
GT + +++
Sbjct: 184 GTVDAILDV 192
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 5e-27
Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 31/209 (14%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I ++ +G +L C + P + W + + +I+
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIV---GRPLPDIKWYRFGK--------------ELIQ 50
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
++ + D T+TL V ++ D G Y C + ++ L ++ P
Sbjct: 51 SRKYKMSSD--GRTHTLTVMTEEQEDEGVYTC-IATNEVGEVETSSKLLLQATPQFHPGY 107
Query: 142 T--RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIY---RGSILKIPQIT 195
+ G ++L G P P ++W + + +I + L + +
Sbjct: 108 PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQ 167
Query: 196 KE-DRGTYYCVAENGVGKGTRRNIAVEVE 223
++ G Y N G + VE++
Sbjct: 168 RKTHAGKYKVQLSNVFGT-VDAILDVEIQ 195
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 7e-32
Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 16/188 (8%)
Query: 38 IGGTVELKCS---VQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDT--A 92
+G V L V + V W K+ + + L +I + F +D +
Sbjct: 5 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGE-EQVLIGRMHHDVIFIEWPFRGFFDIHRS 63
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQP 152
++T+ L+V + G Y C++ +G +++ + L V +P +S + +
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKLG-ETEVTKQEHLSVVKPLTLS-VHSERSQFPDFSV 121
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GS--ILKIPQITKEDRGTYYC 204
+ + C P P + W + GS + + K C
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
Query: 205 VAENGVGK 212
V +N +
Sbjct: 182 VGKNDKEE 189
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 7e-18
Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 28/196 (14%)
Query: 145 LVVSEGQPVQLECFA---GGHPTPRISWRRENNAI------------------LPTGGSI 183
+ G+ V L + P +SW + I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 184 YRGS---ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ 240
+R + L + G Y C + G + T++ + V ++V R
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDF 119
Query: 241 YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
+ + C V A+P P + W+ + + + + + + +++ K +
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG---SLSVAVDLSLPKPWH 176
Query: 301 GSYICRAANKLGTSEK 316
C N +
Sbjct: 177 LPVTCVGKNDKEEAHG 192
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-31
Identities = 50/199 (25%), Positives = 71/199 (35%), Gaps = 25/199 (12%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----- 185
PP I ++ V G C A G P P I WR+ + T
Sbjct: 3 GAHPPEIIR-KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 186 -GSILKI-PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ--- 240
SIL+I P D Y CVAENGVG + + + P + Q
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 241 ----YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296
+ + + C P P I WIK + +V +N YS+ D +++
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPRYSLK---------DGFLQIENSR 171
Query: 297 KRQYGSYICRAANKLGTSE 315
+ G Y C A N +GT
Sbjct: 172 EEDQGKYECVAENSMGTEH 190
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 6e-31
Identities = 52/223 (23%), Positives = 83/223 (37%), Gaps = 28/223 (12%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
T P I Q Q +GG C+ A+ P ++W K N G
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCA---ARGDPPPSIVWRK---N----------GK 45
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV----- 131
+ SR+ + + + D Y C G+ + +SA+ L +
Sbjct: 46 KVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK 105
Query: 132 --RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIYRGSI 188
PVI+ + V+ G V + C A G+PTP I W + + + +
Sbjct: 106 TPAGFPVITQGP-GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF 164
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
L+I +ED+G Y CVAEN +G + + V+ V T
Sbjct: 165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKH 207
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-31
Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 13/187 (6%)
Query: 39 GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G T L+C +Q + P + W++ + + S + D
Sbjct: 17 GLTGTLRCQLQVQGEPPEVHWLRDGQ-------ILELADSTQTQVPLGEDEQDDWIVVSQ 69
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + +Q +D G Y+C V +G +S + + P V+ P L C
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFL-EEPEDRTVAANTPFNLSC 128
Query: 158 FAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRR 216
A G P P + W + + L T L +P + ++ C A N G T R
Sbjct: 129 QAQGPPEPVDLLWLQ-DAVPLATAPGHGPQRSLHVPGL--NKTSSFSCEAHNAKGVTTSR 185
Query: 217 NIAVEVE 223
+ V
Sbjct: 186 TATITVL 192
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-27
Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 35/205 (17%)
Query: 143 RSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYR-------------GSI 188
++ + G L C P + W R+ + + + S
Sbjct: 10 GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQ 69
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDM-DLEC 247
L+I + D G Y C+ G + V +E P +P +L C
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE-EPEDRTVAANTPFNLSC 128
Query: 248 HVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
+ P P ++W+++ L + ++ V + K S+ C
Sbjct: 129 QAQGPPEPVDLLWLQDA--VPLATAPGHGPQR----------SLHVPGLNKT--SSFSCE 174
Query: 307 AANKLGTSEKTVELFESIIPVCPPQ 331
A N G + I V P Q
Sbjct: 175 AHNAKGVTTSRTAT----ITVLPQQ 195
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-31
Identities = 43/187 (22%), Positives = 72/187 (38%), Gaps = 17/187 (9%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITK 196
+S+VV EG E G P P +SW R+ I + + + L IP +TK
Sbjct: 13 QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 197 EDRGTYYCVAENGVGKGTRR-NIAVEVEF-APVITVPKPRLGQALQ-YDMDLECHVEAYP 253
+ G Y A NG G+ T + V+ E P + Q + L+ V P
Sbjct: 73 ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQR-LQSMTVRQGSQVRLQVRVTGIP 131
Query: 254 PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313
P + + ++ + ++ + IS ++ + G+Y A N +G
Sbjct: 132 TPVVKFYRDG--AEIQSSLDFQISQEGDL-----YSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 314 SEKTVEL 320
+ T EL
Sbjct: 185 ATSTAEL 191
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 8e-27
Identities = 40/200 (20%), Positives = 74/200 (37%), Gaps = 33/200 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
PT + Q + G T + + +P V W + +I
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHIS---GFPVPEVSWFR--------------DGQVIST 48
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRR---PPV 136
+ ++ + L + + + ++G Y + G + ++ +L V+ PP
Sbjct: 49 STLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSG---QATSTAELLVKAETAPPN 105
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIYR---GSILKIP 192
+S+ V +G V+L+ G PTP + + R+ I + I + L I
Sbjct: 106 FV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIA 164
Query: 193 QITKEDRGTYYCVAENGVGK 212
+ ED GTY A N VG+
Sbjct: 165 EAYPEDSGTYSVNATNSVGR 184
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 3e-31
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 20/216 (9%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----------- 181
+P +I ++ E V L C A G P P I+W+R + T G
Sbjct: 1 QPHIIQ---LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY 241
+ S L I + D G Y C A + +G +++ +++E+AP +
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDIEYAPKFISNQTIYYSWEGN 116
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
+++ C V++ PP +I W ++ VL ++ ++T + + + +G
Sbjct: 117 PINISCDVKSNPPASIHWRRDK--LVLPAKNTTNLKTYSTGRK---MILEIAPTSDNDFG 171
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSEL 337
Y C A N +GT + L + +P P + EL
Sbjct: 172 RYNCTATNHIGTRFQEYILALADVPSSPYGVKIIEL 207
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 4e-28
Identities = 63/362 (17%), Positives = 105/362 (29%), Gaps = 81/362 (22%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
+ + G V L C A+ P + W + + + G + D R ++
Sbjct: 8 KNETTYENGQVTLVCD---AEGEPIPEITWKRAV-----DGFTFTEGDKSL--DGRIEVK 57
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVISDNSTRSLV 146
SS+ L +KD++ +D+G Y C+ IG + L + P N T
Sbjct: 58 GQHGSSS--LHIKDVKLSDSGRYDCEAASRIG---GHQKSMYLDIEYAPKFISNQT-IYY 111
Query: 147 VSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITKEDRG 200
EG P+ + C +P I WRR+ + + + IL+I + D G
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFG 171
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI 260
Y C A N +G + + + P P V I
Sbjct: 172 RYNCTATNHIGT-RFQEYILALADVP--------------------------SSPYGVKI 204
Query: 261 KEDTQQVLT---------NN---QHYSI--------SHFATADEFTDTTIRVITIEKRQY 300
E +Q HY + T + + +E
Sbjct: 205 IELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTT 264
Query: 301 GSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTSWEPQR 360
A N G + + +PV P P + + S Q
Sbjct: 265 YEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKL-------SITKQD 317
Query: 361 KQ 362
Sbjct: 318 DG 319
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 50/349 (14%), Positives = 90/349 (25%), Gaps = 98/349 (28%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P G + + C V+ + W + ++ +
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR--------------DKLVLPAKNT 146
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPP------V 136
++ + L + + D G Y C IG E L + P
Sbjct: 147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG---TRFQEYILALADVPSSPYGVK 203
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHP----------TPRISWRRENNAILPTGGSIYRG 186
I + S + VS +P GG P W+ + + T
Sbjct: 204 IIELSQTTAKVSFNKP----DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQT------- 252
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKG----------------TRRNIAVEVEFAPVITV 230
++ + + A NG G+G + +I + +
Sbjct: 253 -MVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKL 311
Query: 231 ----PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFT 286
L+Y V+ E ++V N H + H
Sbjct: 312 SITKQDDGGAPILEY------IVKYRSKDKEDQWLE--KKVQGNKDHIILEHL---QWTM 360
Query: 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
+++ AAN+LG SE TV F +P+
Sbjct: 361 GYEVQI-------------TAANRLGYSEPTVYEF-------SMPPKPN 389
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 4e-31
Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 18/214 (8%)
Query: 124 SAEVDLQVRRPPVIS---DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180
+ +R P + R V V+ C AGG+P P + W +
Sbjct: 5 FVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 64
Query: 181 GSIYR-----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV----EFAPVITVP 231
L + + D+G Y CV EN G ++V P++
Sbjct: 65 RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPILQAG 123
Query: 232 KPRLGQALQ-YDMDLECHVEAYPPPAIVWIKED----TQQVLTNNQHYSISHFATADEFT 286
P + D++ C V + P I WIK ++ + + + +
Sbjct: 124 LPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + + G YIC+ +N +G + ++ L
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 4e-23
Identities = 36/211 (17%), Positives = 66/211 (31%), Gaps = 41/211 (19%)
Query: 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLII 80
T T + TV+ +C A P + W+K +
Sbjct: 19 TNTEKMEKRLHAVPAANTVKFRCP---AGGNPMPTMRWLKNGK---------------EF 60
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR--RPPV 136
+ Y + ++L+++ + +D G Y C V G N + +D+ R P+
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDVVERSRHRPI 119
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--------------- 181
+ + G V+ C P I W + G
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212
+ +L + +T+ D G Y C N +G+
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 7e-07
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIR 81
R + + +GG VE C V Y+ P I W+K ++ P +++
Sbjct: 117 RPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVI 137
S S+ L + ++ E DAG Y C+V IG + L V
Sbjct: 176 HSGINS-----SNAEVLALFNVTEADAGEYICKVSNYIGQ---ANQSAWLTVLPKQQA 225
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 5e-31
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 19/199 (9%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI------YRGS 187
P + R+L V L C GHP P + W R+ I+ G
Sbjct: 4 APHFKEEL-RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY-----D 242
L I +T +D Y A N G + ++EVE I +PK G +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
+ ++ P P I W K ++ NN HY + T + +E++ G
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQ--DLIDNNGHYQVIV--TRSFTSLVFPN--GVERKDAGF 175
Query: 303 YICRAANKLGTSEKTVELF 321
Y+ A N+ G +KTVEL
Sbjct: 176 YVVCAKNRFGIDQKTVELD 194
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 4e-24
Identities = 38/218 (17%), Positives = 75/218 (34%), Gaps = 30/218 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P + L C V V W + G +I +
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-------------QGKEIIADGLK 51
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI----SDN 140
+ I+ + + L++ + + DA Y+ + +S L+V P I +
Sbjct: 52 YRIQ-EFKGGYHQLIIASVTDDDATVYQVRAT-NQGGSVSGTASLEVEVPAKIHLPKTLE 109
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQIT 195
++ G+ V ++ G P P I+W++ + I G S++ +
Sbjct: 110 GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVE 169
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
++D G Y A+N G ++ + ++ V VP P
Sbjct: 170 RKDAGFYVVCAKNRFGI-DQKTVELD-----VADVPDP 201
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-30
Identities = 47/185 (25%), Positives = 69/185 (37%), Gaps = 28/185 (15%)
Query: 39 GGTVELKCSVQYAQDYPVI--WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G + L C Y + W+ + P+ I+ + +
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEF-----PVFITMDKRRFVSQT-----------NG 66
Query: 97 TLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR-------RPPVISDNSTRSLVV 147
L + +++ +D G Y C V + S + L P I + +
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV-VQFKDVYA 125
Query: 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAE 207
GQ V LECFA G+P P I WR+ + T G++LKI I ED G Y C AE
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Query: 208 NGVGK 212
N GK
Sbjct: 186 NIRGK 190
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 2e-24
Identities = 35/196 (17%), Positives = 55/196 (28%), Gaps = 34/196 (17%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPR--ISWRRENNAILPTGGS----IYRGSILKIPQITKE 197
+ V EG+ + L C H W + T L I +
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEAS 76
Query: 198 DRGTYYCVAENGVGKGTR---------RNIAVEVEFAPVITVPKP----RLGQALQYDMD 244
D+G Y C + + + I V +GQ +
Sbjct: 77 DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVT---- 132
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
LEC P P I W K + + + S S +++ I+ G Y
Sbjct: 133 LECFALGNPVPDIRWRKVL--EPMPSTAEISTS---------GAVLKIFNIQLEDEGIYE 181
Query: 305 CRAANKLGTSEKTVEL 320
C A N G + +
Sbjct: 182 CEAENIRGKDKHQARI 197
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 31/128 (24%)
Query: 10 FVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKV 66
L + TT I ++ +G V L+C A P + W KV
Sbjct: 99 IPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECF---ALGNPVPDIRWRKVLE--- 152
Query: 67 TEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKIS 124
P+ + + + + L + +IQ D G Y C+ I G K
Sbjct: 153 ----PMPSTAEISTSGA-------------VLKIFNIQLEDEGIYECEAENIRG---KDK 192
Query: 125 AEVDLQVR 132
+ + V+
Sbjct: 193 HQARIYVQ 200
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-30
Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 19/198 (9%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----- 185
PP + + G C A G P P+I W ++ + +
Sbjct: 3 GETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 186 GSILKIPQI-TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ---- 240
GS+L+I + T D Y CVA N VG+ + + V I P + Q
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120
Query: 241 ---YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297
+ C P P I W K D V T+N + I + +++ E+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFK-DFLPVDTSNNNGRIKQLRSES---IGALQIEQSEE 176
Query: 298 RQYGSYICRAANKLGTSE 315
G Y C A N GT
Sbjct: 177 SDQGKYECVATNSAGTRY 194
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-25
Identities = 45/223 (20%), Positives = 74/223 (33%), Gaps = 40/223 (17%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
T + P + +Q GG C P ++W K +
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQAT---GDPRPKIVWNKKGKK------------ 46
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQ-ETDAGYYRCQV--IIGINNKISAEVDLQVRR 133
+ + RF + S L ++ ++ D Y C +G +IS L V R
Sbjct: 47 ---VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVG---EISVSTRLTVLR 100
Query: 134 PPVIS------DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--- 184
I D + VV + + C A G+P P I+W ++ + + +
Sbjct: 101 EDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQ 160
Query: 185 ----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L+I Q + D+G Y CVA N G + V
Sbjct: 161 LRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 25/135 (18%), Positives = 40/135 (29%), Gaps = 22/135 (16%)
Query: 221 EVEFAPVITV-PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSI 276
E P T P G C P P IVW K ++V
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVAS----FICQATGDPRPKIVWNK-KGKKVSNQRFEVIE 56
Query: 277 SHFATADEFTDTTIRVITIEKRQY----GSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
F D + V+ I+ + Y C A+N +G + L + P+
Sbjct: 57 --------FDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL-TVLREDQIPRG 107
Query: 333 QPSELLPLRNVNMAV 347
P+ + + +
Sbjct: 108 FPTIDMGPQLKVVER 122
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 1e-29
Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 10/225 (4%)
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF 158
L + +E G ++ ++ + P + + V G V L C
Sbjct: 124 LQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKV--QVPNASVDVGDDVLLRCQ 181
Query: 159 AGGHPTPRISWRRENNAILPTGGSIYR---GSILKIPQITKEDRGTYYCVAENGVGKGTR 215
G + W T + + +R C AEN VG+
Sbjct: 182 VEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR-AE 240
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS 275
++ V V F + + + + V+ P P++ W+ + T+
Sbjct: 241 VSVQVNVSFPASVQLHTAVE----MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTE 296
Query: 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
A + +R+ G+Y AAN G + ++
Sbjct: 297 FLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 341
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 87.9 bits (217), Expect = 2e-19
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 39/215 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
PT+ D+G V L+C V+ W+ + S
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTEL-----------------EQSA 201
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISDNST 142
++ S L + + C +G V + V P +
Sbjct: 202 TVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRA---EVSVQVNVSFPASVQL--- 255
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-----------GSIYRGSILKI 191
E + G P P + W + + T R L++
Sbjct: 256 --HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 313
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
Q T + G Y +A N G+ +I P
Sbjct: 314 NQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP 347
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-29
Identities = 43/332 (12%), Positives = 90/332 (27%), Gaps = 63/332 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDS 83
P + D ++ +C W K
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK--MTPKSEFSWSK--------------DYVSTEDSP 47
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQV-----------IIGINNKISAEVDLQVR 132
R + + + KD+ D G Y C V I K + + +
Sbjct: 48 RLEVESK--GNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK 105
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS----- 187
P V + ++ +GQ ++++ I
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 165
Query: 188 -ILKIPQITKEDRGTYYCVAENGVGKGT-----------RRNIAVEVEFAPVITVPKPRL 235
+ + ++ ED GTY ++G + E + I P
Sbjct: 166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225
Query: 236 GQALQY------DMDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288
+ L + ++ L+C V IVW K++ + ++ ++ +
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDE--REISVDEKHDFKD-------GIC 276
Query: 289 TIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
T+ + K+ G Y + G + ++L
Sbjct: 277 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 97.4 bits (242), Expect = 5e-23
Identities = 31/251 (12%), Positives = 69/251 (27%), Gaps = 29/251 (11%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSIL 189
P + ++ + EC P SW ++ + + + +
Sbjct: 3 DPFTKEVV-VNVDDDGVISLNFECDKM-TPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVE-----VEFAPVITVPKPRLGQALQYDMD 244
+ +D G Y C + G + I E + + P + L ++
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 245 -------LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297
+ + +I + + + Y + +T I + +EK
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNE--KEIFEGPKYKMHIDR------NTGIIEMFMEK 172
Query: 298 RQY---GSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPT 354
Q G+Y + + T+ TV L + + + +R +
Sbjct: 173 LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 232
Query: 355 SWEPQRKQLNC 365
L C
Sbjct: 233 VTGECNVLLKC 243
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-29
Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 23/233 (9%)
Query: 124 SAEVDLQVRRPPVIS--DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181
+ + P + L V V+ C A G+PTP ISW +
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 182 -----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPK 232
++ L + + DRG Y CV EN G R+ ++V P++
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGL 120
Query: 233 PRLGQALQ-YDMDLECHVEAYPPPAIVWIKE---DTQQVLTNNQHY--SISHFATADEFT 286
P A+ D++ C V + P I W+K + +V + Y + + +
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180
Query: 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLP 339
D +R+ + +R G Y+CRA N +G +EK L V P+ EL+
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS-----VHGPRAAEEELVE 228
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-25
Identities = 40/241 (16%), Positives = 73/241 (30%), Gaps = 47/241 (19%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
+ TV +C A P + W+K R R +R
Sbjct: 23 KLLAVPAANTVRFRCP---AAGNPTPSISWLKNGR-------EFRGEH----RIGGIKLR 68
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRP--PVISDNSTRS 144
+ ++L+++ + +D G Y C V G + + +D+ R P P++ +
Sbjct: 69 HQQ----WSLVMESVVPSDRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPAN 123
Query: 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----------------SIYRGSI 188
G V+ C P I W + G S+
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECH 248
L++ +++ D G Y C A N +G + + V +A + H
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAEEELVEADEAGS----VHHH 238
Query: 249 V 249
Sbjct: 239 H 239
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 3e-09
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIR 81
R + + Q +G VE C V Y+ P I W+K ++ P + +
Sbjct: 113 RPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGP---DGTPYVT 168
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISD 139
+ I + L + ++ E D G Y C+ IG+ L V P +
Sbjct: 169 VLKSWISESV-EADVRLRLANVSERDGGEYLCRATNFIGV---AEKAFWLSVHGPRAAEE 224
Query: 140 NSTRSLVVSEGQPVQLEC 157
+V + +
Sbjct: 225 E-----LVEADEAGSVHH 237
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 112 bits (280), Expect = 3e-29
Identities = 35/199 (17%), Positives = 68/199 (34%), Gaps = 18/199 (9%)
Query: 39 GGTVELKCSVQY----AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFA-------- 86
G T L C + W+ + I S I D+ +
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 87 IRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLV 146
D S ++ V ++Q +D G Y+C+V + + L V P +
Sbjct: 75 TSNDVKSGDASINVTNLQLSDIGTYQCKVKKA-PGVANKKFLLTVLVKPSGTRCFV-DGS 132
Query: 147 VSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYY 203
G +L+C G + W++ +++ + ++ + + E GTY
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYS 192
Query: 204 CVAENGVGKGTRRNIAVEV 222
C +N VG + + ++V
Sbjct: 193 CTVQNRVGS-DQCMLRLDV 210
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 3e-22
Identities = 39/235 (16%), Positives = 65/235 (27%), Gaps = 55/235 (23%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP----RISWRR------------- 171
L + P + + ++G+ L C P I W
Sbjct: 1 LSITTPE-------QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVII 53
Query: 172 --ENNAILPTGGSIYRG-------------SILKIPQITKEDRGTYYCVAENGVGKGTRR 216
+ I +G + + + + D GTY C + G +
Sbjct: 54 LYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN-K 112
Query: 217 NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYS 275
+ V P T + + D L+C + P W K Q +
Sbjct: 113 KFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA- 171
Query: 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP 330
E T I V G+Y C N++G+ + + L V PP
Sbjct: 172 --------EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD-----VVPP 213
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-05
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 28/115 (24%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P+ + + ++IG +LKC + W K+ + + T +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEP--KEGSLPLQFEWQKLS-----DSQTMPTPWLAEMT 174
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRP 134
+ VK+ +G Y C V +G + L V P
Sbjct: 175 SP-------------VISVKNASSEYSGTYSCTVQNRVG---SDQCMLRLDVVPP 213
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 4e-29
Identities = 43/305 (14%), Positives = 90/305 (29%), Gaps = 57/305 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQY---AQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
T + ++ ++ + CS+ + V D+ P T +
Sbjct: 4 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ----RLNPTVTYGN---- 55
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIG-INNKISAEVDLQVRRPPVISDN 140
D+ S+ ++ V E C VI+G + + V + P +
Sbjct: 56 --------DSFSAKASVSVTAEDE-GTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 106
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
VSEG V ++C A ++ + + L + +++
Sbjct: 107 KPE---VSEGTEVTVKCEAHPRAKVTLNGVP--------AQPLGPRAQLLLKATPEDNGR 155
Query: 201 TYYCVAENGVGKGT---RRNIAVEVEFAPVITVPKPRLGQALQY--DMDLECHVEAYPPP 255
++ C A V + + V + P + C P P
Sbjct: 156 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP 215
Query: 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
+ +K+ T + +T+ + G+Y+CRA + G
Sbjct: 216 ELKCLKDGTFPLPIG--------------------ESVTVTRDLEGTYLCRARSTQGEVT 255
Query: 316 KTVEL 320
+ V +
Sbjct: 256 REVTV 260
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 98.6 bits (245), Expect = 7e-24
Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 42/209 (20%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
T P + I + G V +KC P + ++
Sbjct: 94 TIYSFPAPNVILTKPEVSEGTEVTVKCEAH-----PRAKVTLNGVPAQPL---------- 138
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI---SAEVDLQVRRPPV 136
LL+K E + + C + + ++ + +L+V P
Sbjct: 139 -------------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 185
Query: 137 ISDNST-RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
+ + + E C A G+P P + ++ LP G + +T
Sbjct: 186 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVT 236
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEF 224
++ GTY C A + G+ R + V V
Sbjct: 237 RDLEGTYLCRARSTQGE-VTREVTVNVLS 264
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 5e-28
Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 37/201 (18%)
Query: 24 TPTISYISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD 82
+ +V L C + + + W +P T S +
Sbjct: 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGN-----LIPTHTQPSYRFK- 57
Query: 83 SRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNST 142
D+G Y CQ +S V L V ++ T
Sbjct: 58 --------------------ANNNDSGEYTCQTG---QTSLSDPVHLTVLFEWLVL--QT 92
Query: 143 RSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGT 201
L EG+ + L C + P ++++ + + + IPQ G
Sbjct: 93 PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ----KFSHLDPTFSIPQANHSHSGD 148
Query: 202 YYCVAENGVGKGTRRNIAVEV 222
Y+C G + + + + V
Sbjct: 149 YHCTGNIGYTLFSSKPVTITV 169
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 4e-19
Identities = 29/193 (15%), Positives = 48/193 (24%), Gaps = 37/193 (19%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQ 193
V+ + V + V L C P I W N I +
Sbjct: 5 AVLKLEP-PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP------SYRFK 57
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP---RLGQALQYDMDLECHVE 250
D G Y C + + V F ++ + G+ + L CH
Sbjct: 58 ANNNDSGEYTCQTGQTSLSDP---VHLTVLFEWLVLQTPHLEFQEGETI----MLRCHSW 110
Query: 251 A-YPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308
P + + + + + +SI + G Y C
Sbjct: 111 KDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHS----------------GDYHCTGN 154
Query: 309 NKLGT-SEKTVEL 320
S K V +
Sbjct: 155 IGYTLFSSKPVTI 167
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 2e-27
Identities = 41/191 (21%), Positives = 62/191 (32%), Gaps = 5/191 (2%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDR-NKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
V L W K + E S++ ++ R S +
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE-IIYSNGS 72
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
LL + I D G Y + + A V V +P + V E V L C
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC 132
Query: 158 FAGGHPTPRISWRRENNAILPTGGSIYR--GSILKIPQITKEDRGTYYCVAENGVGKGTR 215
+ I W + ++ T SIL+I I +ED G Y C N V
Sbjct: 133 LSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRS 191
Query: 216 RNIAVEVEFAP 226
+I +++ F P
Sbjct: 192 NSIKLDIIFDP 202
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 1e-14
Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 32/196 (16%)
Query: 147 VSEGQPVQLECFAGGHPTPRISWRRENNAILPT--------------------GGSIYRG 186
V+E V L +W + N + IY
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYD-MDL 245
L IT +D G Y + + T+ + V + + D + L
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130
Query: 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305
C I W+ Q L + ++S ++ +R+ I++ G Y C
Sbjct: 131 TCLSND-IGANIQWLFNS--QSLQLTERMTLSQ-------NNSILRIDPIKREDAGEYQC 180
Query: 306 RAANKLGTSE-KTVEL 320
+N + +++L
Sbjct: 181 EISNPVSVRRSNSIKL 196
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-27
Identities = 28/179 (15%), Positives = 49/179 (27%), Gaps = 12/179 (6%)
Query: 146 VVSEGQPVQLECFAGGHPTPRIS--WRRENNAILPTGGSIYRGSILKIPQITKEDRGTYY 203
V G + L C T W + + G + + + G Y
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVDSDDQWGEYS 65
Query: 204 CVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA-IVWIKE 262
CV +++ P + K L C E+ PP W K
Sbjct: 66 CVFLPEPMG----TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 263 DTQQVLTNNQHYSISHFATADEFTDT-TIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ F ++ + I + +E G Y C + G+ + + L
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA-DPGQYRCNGTSSKGSDQAIITL 179
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 3e-21
Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 39/201 (19%)
Query: 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS 93
++D+G + L CS+ V + + V G +
Sbjct: 8 TVEDLGSKILLTCSLN-DSATEVTGHRWLKGGVVLKEDALPGQKTEFKV----------- 55
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPV 153
+ G Y C + ++Q+ PP + S ++EG+
Sbjct: 56 ---------DSDDQWGEYSCVF----LPEPMGTANIQLHGPPRVKAVK-SSEHINEGETA 101
Query: 154 QLECFAGGHP-TPRISWRRENNAILPTGGSIYRG----------SILKIPQIT-KEDRGT 201
L C + P +W + ++ + S L I + + D G
Sbjct: 102 MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 161
Query: 202 YYCVAENGVGKGTRRNIAVEV 222
Y C + G + I + V
Sbjct: 162 YRCNGTSSKGS-DQAIITLRV 181
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 25/116 (21%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP----VIWMKVDRNKVTEPLPISTGSSLII 80
P + + + + G T L C ++ P W K+ + E + GS
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCK---SESVPPVTDWAWYKITDS---EDKALMNGSE--- 134
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQ-ETDAGYYRCQVIIGINNKI---SAEVDLQVR 132
SRF + ++ L ++++ E D G YRC + A + L+VR
Sbjct: 135 --SRFFVS--SSQGRSELHIENLNMEADPGQYRCNG----TSSKGSDQAIITLRVR 182
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-27
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILK 190
+P +++ RS V G V C A P + W R +N LP+ + G L
Sbjct: 7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI-LT 65
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRR-NIAVEV 222
I + D GTY C N + V+V
Sbjct: 66 IRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 5e-09
Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 226 PVITVPKPRLGQALQ-YDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
++TV + R D+ C ++ P +VW + ++ + +
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF--------- 60
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + ++ G+Y+C +N + T L
Sbjct: 61 ---NGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-05
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 28/119 (23%)
Query: 18 LTTAQRTPTIS-YISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTG 75
L + ++ + Q G V C+ + + W ++ LP
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH----NGKLP---- 54
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVR 132
S + + L ++++Q +DAG Y C G N L V+
Sbjct: 55 SRAMDFNG-------------ILTIRNVQPSDAGTYVC---TGSNMFAMDQGTATLHVQ 97
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 109 bits (272), Expect = 3e-26
Identities = 40/335 (11%), Positives = 95/335 (28%), Gaps = 30/335 (8%)
Query: 32 QEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD 90
+ +D+ G+V C++ + + + + + + G + R +
Sbjct: 225 ELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQ 284
Query: 91 TASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISDNSTRSLVVS 148
++++++ +++ DAG Y C + + S +
Sbjct: 285 DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGV 344
Query: 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-------------RGSI------- 188
G V + C + I + + R S+
Sbjct: 345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNG 404
Query: 189 ---LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR--LGQALQYDM 243
+ + Q+T D G Y+C+ T I + + LG+ L+
Sbjct: 405 TFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPC 464
Query: 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
C +Y W Q + + ++ S + + ++ + + + G Y
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWY 524
Query: 304 ICRAANKLGTSEK-TVELF-ESIIPVCPPQTQPSE 336
C E V + E ++
Sbjct: 525 WCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAK 559
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 7e-25
Identities = 47/318 (14%), Positives = 96/318 (30%), Gaps = 46/318 (14%)
Query: 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G +V + C W + L S G R + + T
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
+ + + + + D+G Y+C + I + +S +V L+V + P + ++ T+ V G+ V +
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLND-TKVYTVDLGRTVTI 132
Query: 156 ECFAGGHPTPRISWRRENNAILPT---------------------GGSIYRGSILKIPQI 194
C + + + P G+ + I Q+
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL 192
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP---------RLGQALQYDMDL 245
D G Y C A + ++N ++V V + LG +
Sbjct: 193 RLSDAGQYLCQAGDDSN-SNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251
Query: 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---GS 302
C + +V + + ++ F+ + I + G
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGR-ILLNPQDKDGSFS------VVITGLRKEDAGR 304
Query: 303 YICRAANKLGTSEKTVEL 320
Y+C A + E +
Sbjct: 305 YLCGAHSDGQLQEGSPIQ 322
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 91.2 bits (225), Expect = 3e-20
Identities = 36/232 (15%), Positives = 72/232 (31%), Gaps = 21/232 (9%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPI--STGSSLIIR 81
TI G +V + C W + + + S G
Sbjct: 332 STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQY 391
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
+ R ++ + + T+T+++ + DAG+Y C + + E+ + P + +
Sbjct: 392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGN 451
Query: 142 TRSLVVSEGQPVQLECF----AGGHPTPRISWRRENNAILP-TGGSIYRGSI-------- 188
G+ +++ C + W LP + +
Sbjct: 452 VT---AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508
Query: 189 --LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQA 238
L + +T+ D G Y+C + G G + V VE L +A
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKA 560
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 71.2 bits (173), Expect = 1e-13
Identities = 31/232 (13%), Positives = 74/232 (31%), Gaps = 34/232 (14%)
Query: 143 RSLVVSEGQPVQLECF---AGGHPTPRISWRREN-----NAILPTGGSIY-----RGSI- 188
+ EG V + C+ + R W R+ ++ + G + R ++
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 189 ---------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQAL 239
+ I Q++++D G Y C +G ++++EV P + L
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 240 QYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSI-----SHFATADEFTDTTIRV 292
+ + C + ++ + VL + + + T +
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186
Query: 293 ITIEKRQY---GSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLR 341
+ I + + G Y+C+A + +++K +L +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFH 238
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 62.7 bits (151), Expect = 7e-11
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 10/120 (8%)
Query: 39 GGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G T+++ C Y W K + S S+ + D S +
Sbjct: 457 GETLKVPCHFPCKFSSYEKYWCKWNNTGCQ------ALPSQDEGPSKAFVNCDENSRLVS 510
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + + D G+Y C V G +A V + V +++ E
Sbjct: 511 LTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVS---LAKADAAPDEK 567
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 105 bits (262), Expect = 3e-26
Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 44/251 (17%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSS 77
+Q P ++ S + +G +V + C VQ ++ V W+ + S+
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 78 LIIRDSRFAIRY----DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133
L + RF R DT + +LL++D+Q+ D G Y C++ + N + + +++
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLK-NESMVMKKPVELWV 120
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR---ISWRREN----------------- 173
P R L V G Q+ C R ++W +
Sbjct: 121 LP----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176
Query: 174 -----------NAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
N + TG +K+ + + D+G Y C G + +R+ I + V
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHV 235
Query: 223 EFAPVITVPKP 233
P
Sbjct: 236 VQDEFQRTISP 246
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 2e-15
Identities = 41/259 (15%), Positives = 70/259 (27%), Gaps = 54/259 (20%)
Query: 141 STRSLVVSEGQPVQLECF---AGGHPTPRISWRRE--------------NNAILPTGGSI 183
S+ L V G+ V + C R+ W +N +PTG
Sbjct: 11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQ 70
Query: 184 YRGSI----------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
R + L + + K D G Y C VE+ V+
Sbjct: 71 NRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVM-KKPVELW---VLPEEPR 126
Query: 234 RLGQALQYDMDLECHVEAYPPP---AIVWIKED-----TQQVLTNNQHYSISHFATADEF 285
L + + C +++ + W+ + VL+ + + F + F
Sbjct: 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF 186
Query: 286 TDTTIRVITIEKRQY------------GSYICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
+ I + G Y C S KT+ L + Q
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL---HVVQDEFQRT 243
Query: 334 PSELLPLRNVNMAVIFAEQ 352
S P ++ Q
Sbjct: 244 ISPTPPTDKGQQGILNGNQ 262
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-26
Identities = 47/200 (23%), Positives = 74/200 (37%), Gaps = 24/200 (12%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS------ 182
Q PP I + L+VS+G+P L C A G PTP I W + +
Sbjct: 4 RQEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 183 IYRGSILKIPQI-----TKEDRGTYYCVAENGVGKGTRRNIAVEV-EFAPVITVPKPRLG 236
+ L +I ++ D G Y CVA N +G+ + ++EV +
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVM 122
Query: 237 QALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295
A+ +EC +P P I W K D + ++ +I + +
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERITIR---------GGKLMITYT 172
Query: 296 EKRQYGSYICRAANKLGTSE 315
K G Y+C N +G E
Sbjct: 173 RKSDAGKYVCVGTNMVGERE 192
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 2e-25
Identities = 47/213 (22%), Positives = 72/213 (33%), Gaps = 19/213 (8%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I + I G L C A+ P + W K +V +++
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCK---AEGRPTPTIEWYK-GGERVETDKDDPRSHRMLLP 65
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV-RRPPVISDN 140
++ D G Y C + +S + L+V N
Sbjct: 66 SGSLFFL--------RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN 117
Query: 141 STRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIY-RGSILKIPQITKED 198
++V+ G+P +EC GHP P ISW+++ + + I RG L I K D
Sbjct: 118 P-SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSD 176
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
G Y CV N VG+ + V P
Sbjct: 177 AGKYVCVGTNMVGERESEVAELTVLERPSFVKA 209
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 20/122 (16%)
Query: 18 LTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGS 76
L A + + +G ++C P I W K D + P+
Sbjct: 105 LEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGS------PLDDKD 157
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
I L++ +++DAG Y C + + S +L V P
Sbjct: 158 ERITIRG------------GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
Query: 137 IS 138
Sbjct: 206 FV 207
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 6e-26
Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GS 187
+ P I + LVV + +P L C G P P I W ++ + +R G+
Sbjct: 8 QSPRIIE-HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 188 I---LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV-EFAPVITVPKPRLGQALQ-YD 242
+ + ++D G Y+CVA+N VG+ R+ ++++ V P+ + +
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVE-PKDTRVAKGET 125
Query: 243 MDLECH-VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
LEC + P P ++WIK+ L + + S + + + +E G
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDG--VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 302 SYICRAANKLGTSE 315
+Y C A N +GT E
Sbjct: 184 NYKCIAQNLVGTRE 197
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 5e-23
Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 32/227 (14%)
Query: 18 LTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPIST 74
L ++P I + + L C + P + W K + P+ST
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCK---VEGKPEPTIEWFK---DGE----PVST 52
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVR 132
+++ + + ++ +E D G Y C +G A + + V
Sbjct: 53 NE-----KKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECF-AGGHPTPRISWRRENNAILPTGGS--------- 182
R + V++G+ LEC G P P + W ++ +
Sbjct: 108 RDDFRV--EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165
Query: 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229
I G L I + D G Y C+A+N VG + V+
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 4e-07
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 12/125 (9%)
Query: 18 LTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGS 76
L A ++ G T L+C P + W+K PL +
Sbjct: 102 LQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG-----VPLD-DLKA 155
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
SR I LL+ +++ D G Y+C + + S+ L V+
Sbjct: 156 MSFGASSRVRI-----VDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAA 210
Query: 137 ISDNS 141
+
Sbjct: 211 AHHHH 215
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 6e-05
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 10/111 (9%)
Query: 228 ITVPKP----RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS--ISHFAT 281
+T PK +G + LEC + + I+ Q+V + S +
Sbjct: 5 VTAPKEVYTVDVGS----SVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEE 60
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
+ +++ R G Y C K + + +
Sbjct: 61 QLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTR 111
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 1e-24
Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 18/210 (8%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP--ISTGSSLIIRDSRFAIR-----YDT 91
G + ++C + + + V + + + L ++ S + R
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ 151
+ L + D++ DAG YRC + G + ++V P + +V
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYG--GADYKRITVKVNAPYNKINQRI-LVVDPVTS 132
Query: 152 PVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG-------SILKIPQITKEDRGTYYC 204
+L C A G+P + W ++ +L + ++ +I +YC
Sbjct: 133 EHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYC 192
Query: 205 VAENGVGKGTRRNIAVEVEFAPVITVPKPR 234
+ + P+ P R
Sbjct: 193 TFRRLDP-EENHTAELVIPELPLAHPPNER 221
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 1e-18
Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 33/217 (15%)
Query: 144 SLVVSEGQPVQLECFAGGHPTP-----RISWRRENNAIL---------PTGGSIYRG--- 186
VV G + +EC + W E+ I+ S YR
Sbjct: 10 LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRAR 69
Query: 187 ----------SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLG 236
+ L+I + +D G Y C+ G R I V+V + +
Sbjct: 70 LLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKR--ITVKVNAPYNKINQRILVV 127
Query: 237 QALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296
+ + +L C E YP ++W D Q + + ++ ++ + T + I
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKT---TTTNSKREEKLFNVTSTL-RIN 183
Query: 297 KRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
+ C T EL +P+ P +
Sbjct: 184 TTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNE 220
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 99 bits (248), Expect = 2e-24
Identities = 45/239 (18%), Positives = 64/239 (26%), Gaps = 48/239 (20%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVD------------RNKVTEP 69
T+ E GGTVEL CS Q A D + W+K N E
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 70 LPISTGSSLIIRDSRFAIRYDTASST-YTLLVKDIQETDAGYYRCQV-------IIGINN 121
L S F R A+ TL + + D G Y CQV G++
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181
K + ++ + V EG + + C ++W
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182
Query: 182 SIYRGSI-------------------------LKIPQITKEDRGTYYCVAENGVGKGTR 215
Y+ L I D G +C G G+
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDA 241
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 80.0 bits (196), Expect = 3e-17
Identities = 32/250 (12%), Positives = 53/250 (21%), Gaps = 65/250 (26%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLEC---FAGGHPTPRISWRRENNAILPTGGSIYR 185
+ VR + V G V+L C A P ISW + + T
Sbjct: 3 MTVRTTH-------TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGN 55
Query: 186 ---------------------------------GSILKIPQITKEDRGTYYCVAENGVGK 212
L++ + +D G Y+C +
Sbjct: 56 YNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIR 115
Query: 213 GTRRNIAVEVEFAPVITVPKPRLGQALQY--------DMDLECHVEAYPPPAIVWIKEDT 264
A V P + + D+ + C + W T
Sbjct: 116 TEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPT 175
Query: 265 QQVLTNNQHYSISHFATADEFTDTTIRV-----------ITIEKRQY---GSYICRAANK 310
Y T + + + I + G C A
Sbjct: 176 FFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATG 235
Query: 311 LGTSEKTVEL 320
G +
Sbjct: 236 QGELDADRSS 245
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 2e-24
Identities = 39/305 (12%), Positives = 87/305 (28%), Gaps = 57/305 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQ---YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR 81
T + ++ ++ + CS+ + V D+ R
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ-----------------R 231
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDLQVRRPPVISDN 140
+ + + S + ++ C VI+G ++ V + P +
Sbjct: 232 LNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 291
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
VSEG V ++C A ++ + + L + +++
Sbjct: 292 KPE---VSEGTEVTVKCEAHPRAKVTLNGVP--------AQPLGPRAQLLLKATPEDNGR 340
Query: 201 TYYCVAENGVG---KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD--LECHVEAYPPP 255
++ C A V + + V + P + + C P P
Sbjct: 341 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP 400
Query: 256 AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
+ +K+ T + T+ + G+Y+CRA + G
Sbjct: 401 ELKCLKDGTFPLPIGESV--------------------TVTRDLEGTYLCRARSTQGEVT 440
Query: 316 KTVEL 320
+ V +
Sbjct: 441 REVTV 445
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 97.2 bits (241), Expect = 2e-22
Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 42/209 (20%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
T P + I + G V +KC V V +
Sbjct: 279 TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRA--KVTLNGVPAQPLGPRA--------- 327
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV---IIGINNKISAEVDLQVRRPPV 136
LL+K E + + C + G + +L+V P
Sbjct: 328 -----------------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 370
Query: 137 ISDNST-RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQIT 195
+ + + E C A G+P P + ++ LP G + +T
Sbjct: 371 LDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVT 421
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEF 224
++ GTY C A + G+ T R + V V
Sbjct: 422 RDLEGTYLCRARSTQGEVT-REVTVNVLS 449
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 91.1 bits (225), Expect = 3e-20
Identities = 38/317 (11%), Positives = 79/317 (24%), Gaps = 43/317 (13%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDT 91
+ I GG+V + CS Q + K
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELL---------------------LP 45
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ 151
++ + ++ + C + + +A+ L V P + + G+
Sbjct: 46 GNNRKVYELSNV--QEDSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGK 102
Query: 152 PVQLECFA-GGHPTPR--ISWRRENNAILPTGGSIYRGSILKIPQITKED-RGTYYCVAE 207
+ L C GG P + R + + + ++ + C E
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE--------CHVEAYPPPAIVW 259
+ + T P L LE C ++ P +
Sbjct: 163 LDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQ 222
Query: 260 IKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319
+ + +Q + + D F+ +T E C + E
Sbjct: 223 V-----HLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 277
Query: 320 LFESIIPVCPPQTQPSE 336
+ P P ++
Sbjct: 278 VTIYSFP--APNVILTK 292
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 85.3 bits (210), Expect = 2e-18
Identities = 44/335 (13%), Positives = 93/335 (27%), Gaps = 58/335 (17%)
Query: 20 TAQRTPTISYIS-QEQIKDIGGTVELKCSVQY---AQDYPVIWMKVDRNKVTEPLPISTG 75
T TP ++ + +G + L+C V+ + V+ ++ ++ EP
Sbjct: 81 TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA 140
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-------ISAEVD 128
T V ++ + C+ + + + SA
Sbjct: 141 EV-------------------TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQ 181
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG---HPTPRISWRRENNAILPTG-GSIY 184
LQ P V+ + C G ++ + + PT
Sbjct: 182 LQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGND 241
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKG---TRRNIAVEVEFAPVITVPKPRLGQALQY 241
S +T ED GT +G T + + + AP + + KP +
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV----SE 297
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
++ EA+P + Q + Q + + +
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ-----------------LLLKATPEDNGR 340
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
S+ C A ++ + + P+ +
Sbjct: 341 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD 375
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 2e-13
Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 24/219 (10%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITK-EDR 199
S +++ G V + C + LP + G+ K+ +++ ++
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPMLLGIETP----LPKKELLLPGNNRKVYELSNVQED 60
Query: 200 GTYYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQYDMDLECHVEAYPPPA- 256
C + G+ T + + V + P V P P + ++ L C VE P A
Sbjct: 61 SQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGK-NLTLRCQVEGGAPRAN 118
Query: 257 --IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314
+V ++ + + L + T V+ ++ CR L
Sbjct: 119 LTVVLLRGE--KELKREPAVGEP--------AEVTTTVLVRRDHHGANFSCRTELDLR-- 166
Query: 315 EKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP 353
+ +ELFE+ QT P + V+ V+ +
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQ 205
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 2e-24
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQP 152
+ +L + + + D+G Y+CQ S V L+V ++ S + VV EGQP
Sbjct: 48 ETNSSLNIVNAKFEDSGEYKCQHQ---QVNESEPVYLEVFSDWLLLQAS--AEVVMEGQP 102
Query: 153 VQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211
+ L C ++ + ++ A+ Y + I T ED GTYYC +
Sbjct: 103 LFLRCHGWRNWDVYKVIYYKDGEAL----KYWYENHNISITNATVEDSGTYYCTGKVWQL 158
Query: 212 KGTRRNIAVEVEFAP 226
+ + V AP
Sbjct: 159 DYESEPLNITVIKAP 173
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 1e-17
Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 37/197 (18%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSIL 189
V + P +S N + + +G+ V L C W + T S L
Sbjct: 1 VPQKPKVSLNPPWN-RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------L 53
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL---GQALQYDMDLE 246
I ED G Y C + + +EV ++ + GQ L L
Sbjct: 54 NIVNAKFEDSGEYKCQHQQVNESEP---VYLEVFSDWLLLQASAEVVMEGQPL----FLR 106
Query: 247 CHVEA-YPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
CH + +++ K+ + N + SI++ D G+Y
Sbjct: 107 CHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDS----------------GTYY 150
Query: 305 CRAANKLGTSE-KTVEL 320
C E + + +
Sbjct: 151 CTGKVWQLDYESEPLNI 167
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 98.3 bits (244), Expect = 4e-24
Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 26/207 (12%)
Query: 38 IGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSS----LIIRDSRFAIRYDTA 92
G +V L C+ D Y + W DR+ L + + + D+R
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP---VISDNSTRSLVVSE 149
S L++ + Q D Y C V G A L V P +S N V+ +
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 150 GQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRG-----------------SILKI 191
C + G+P P+I+W R + G S L +
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYL 193
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNI 218
+ +++C A + +G +
Sbjct: 194 RLRKDDRDASFHCAAHYSLPEGRHGRL 220
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 1e-10
Identities = 33/226 (14%), Positives = 63/226 (27%), Gaps = 44/226 (19%)
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRREN------------- 173
++++ PP++ V G+ V L+C G H + W +
Sbjct: 1 EVRLSVPPLVE--------VMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEM 52
Query: 174 ------NAILPTGGSIYRGSI-----LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ T G + L + + D Y CV G + V
Sbjct: 53 QGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Query: 223 EFAP---VITVPKPRLGQALQYDMD-LECHVE-AYPPPAIVWIKEDT-----QQVLTNNQ 272
P ++ K L + C+ P P I W + ++
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172
Query: 273 HYSISHFATADEFTDTTIRVITIEKRQYGS-YICRAANKLGTSEKT 317
S + + + T+ + + K + + C A L
Sbjct: 173 MTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHG 218
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 8e-24
Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 40/211 (18%)
Query: 144 SLVVSEGQPVQLEC----------FAGGHPTPRISWRRENNAILPTG----GSIYRGSIL 189
S + ++++ +++W +AI + G L
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRR-NIAVEV-----------EFAPVITVPKPRLGQ 237
+I + T D+G Y +G + +++ + + A + + R+
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 121
Query: 238 ALQYDMD--------LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289
L + L C+V PPP + W+K + + L H ++ +
Sbjct: 122 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE--KALAQTDHCNLKF----EAGRTAY 175
Query: 290 IRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + G Y NK G+ +
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 95.7 bits (238), Expect = 2e-23
Identities = 35/206 (16%), Positives = 57/206 (27%), Gaps = 45/206 (21%)
Query: 34 QIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTA 92
+I+ ++L V Y + V W I R
Sbjct: 12 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS--------------AIRYSDRVKTGVT-- 55
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR-------------------- 132
L + + D G Y + VDL +
Sbjct: 56 GEQIWLQINEPTPNDKGKYVM-ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 114
Query: 133 -RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----G 186
R V+ + + EG+ + L C G P P +SW + A+ T +
Sbjct: 115 NRARVLGG-LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT 173
Query: 187 SILKIPQITKEDRGTYYCVAENGVGK 212
+ I ++ D G Y V +N G
Sbjct: 174 AYFTINGVSTADSGKYGLVVKNKYGS 199
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-07
Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 8/112 (7%)
Query: 245 LECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
L V Y + W + + + +++ G Y
Sbjct: 22 LYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGV-----TGEQIWLQINEPTPNDKGKY 74
Query: 304 ICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTS 355
+ + +KTV+L + Q + + N A + P
Sbjct: 75 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 126
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 24/117 (20%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLII 80
R + + G + L C+V P V W+K ++ +
Sbjct: 115 NRARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEK--------------ALA 159
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRP 134
+ ++++ T + + D+G Y V NK +++ + V P
Sbjct: 160 QTDHCNLKFEA-GRTAYFTINGVSTADSGKYGLVVK----NKYGSETSDFTVSVFIP 211
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 3e-23
Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 37/218 (16%)
Query: 25 PTISYISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS 83
+ Q +V LKC +D W IS+ +S
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFH-------NESLISSQAS------ 54
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR 143
+ + D+G YRCQ + +S V L+V ++
Sbjct: 55 -------------SYFIDAATVDDSGEYRCQTQ---LSTLSDPVQLEVHIGWLLL--QAP 96
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
V E P+ L C + ++++ + + S IP+ T +D G+Y
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGR----KYFHHNSDFYIPKATLKDSGSY 152
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ 240
+C G + + + + ++ Q
Sbjct: 153 FCRGLVGSKNVSSETVQITITQGLAVSTISSFFPPGYQ 190
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 3e-14
Identities = 35/212 (16%), Positives = 57/212 (26%), Gaps = 40/212 (18%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQ 193
V+ V E V L+C P W + I S I
Sbjct: 8 AVVFLEPQWY-RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS------YFIDA 60
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP---RLGQALQYDMDLECHVE 250
T +D G Y C + + +EV ++ + + L CH
Sbjct: 61 ATVDDSGEYRCQTQLSTL---SDPVQLEVHIGWLLLQAPRWVFKEEDPI----HLRCHSW 113
Query: 251 AYPPPA-IVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308
+ +++ + +N + I D GSY CR
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDS----------------GSYFCRGL 157
Query: 309 NKLGT-SEKTVELFESIIPVCPPQTQPSELLP 339
S +TV++ I + S P
Sbjct: 158 VGSKNVSSETVQI---TITQGLAVSTISSFFP 186
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 7e-05
Identities = 16/137 (11%), Positives = 39/137 (28%), Gaps = 26/137 (18%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLII 80
+ + K+ + L+C + V +++ G
Sbjct: 87 HIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTALHKVTYLQ-------------NGKGRKY 132
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
+ D+G Y C+ ++G N S V + + + +S
Sbjct: 133 F-----------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTI 181
Query: 141 STRSLVVSEGQPVQLEC 157
S+ +G+ + +
Sbjct: 182 SSFFPPGYQGKKKKKKG 198
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 6e-23
Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 37/200 (18%)
Query: 25 PTISYISQEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS 83
+ Q +V LKC +D W IS+ +S
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFH-------NESLISSQAS------ 54
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR 143
+ + D+G YRCQ + +S V L+V ++
Sbjct: 55 -------------SYFIDAATVNDSGEYRCQTN---LSTLSDPVQLEVHIGWLLL--QAP 96
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
V E P+ L C + ++++ + + S IP+ T +D G+Y
Sbjct: 97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR----KYFHHNSDFHIPKATLKDSGSY 152
Query: 203 YCVAENGVGKGTRRNIAVEV 222
+C G + + + +
Sbjct: 153 FCRGLVGSKNVSSETVNITI 172
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 2e-16
Identities = 32/194 (16%), Positives = 51/194 (26%), Gaps = 37/194 (19%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIP 192
V+ + V E V L+C P W + I S I
Sbjct: 7 KAVVFLEP-QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS------YFID 59
Query: 193 QITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL---GQALQYDMDLECHV 249
T D G Y C + +EV ++ + + L CH
Sbjct: 60 AATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEEDPI----HLRCHS 112
Query: 250 EA-YPPPAIVWIKEDTQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
+ +++ + +N + I D GSY CR
Sbjct: 113 WKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDS----------------GSYFCRG 156
Query: 308 ANKLGT-SEKTVEL 320
S +TV +
Sbjct: 157 LVGSKNVSSETVNI 170
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 94.1 bits (233), Expect = 8e-23
Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 15/197 (7%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG---SILKIPQITKEDRG 200
+ G V L C G +P SWR + + P G + S L + ++ +
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQID--SPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA---I 257
+Y C A K + I VE+ P + ++C V P I
Sbjct: 68 SYLCTATCESRKLEKG-IQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126
Query: 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317
+K D L +Q + + E + + + +CRA + +
Sbjct: 127 DLLKGDH---LMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSV 183
Query: 318 VELFESIIPV---CPPQ 331
+ +++ + P+
Sbjct: 184 PTVRQAVKELQVYISPK 200
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 2e-15
Identities = 31/209 (14%), Positives = 65/209 (31%), Gaps = 38/209 (18%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
IG +V L CS + W + + + +S T
Sbjct: 15 IGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTS-------------------T 55
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + + + Y C + K+ + +++ P + S + G+P+ ++C
Sbjct: 56 LTMNPVSFGNEHSYLCTATCE-SRKLEKGIQVEIYSFPKDPE-IHLSGPLEAGKPITVKC 113
Query: 158 FA-GGHPTPR--ISWRRENNAI-------LPTGGSIYRGSILKIPQITKEDRG-TYYCVA 206
+P R I + ++ + S+ S+ ED G C A
Sbjct: 114 SVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRA 173
Query: 207 ENGVG------KGTRRNIAVEVEFAPVIT 229
+ + + ++V +P T
Sbjct: 174 KLHIDEMDSVPTVRQAVKELQVYISPKNT 202
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 1e-22
Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 38/196 (19%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G V + V ++ ++ I ++ + D +
Sbjct: 17 KGQVRFWMQAEKLSGNAKVNYIFNEKE--------------IFEGPKYKMHIDRNTGIIE 62
Query: 98 LLVKDIQETDAGYYRCQV-------------IIGINNKISAEVDLQ-----VRRPPVISD 139
+ ++ +Q+ D G Y Q+ + + K+ E + Q ++ P +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 140 NSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYRG--SILKIPQITK 196
S V+ V L+C A I W ++ I ++ L I + +K
Sbjct: 123 --YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSK 180
Query: 197 EDRGTYYCVAENGVGK 212
+D G Y + ++ GK
Sbjct: 181 KDAGIYEVILKDDRGK 196
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 4e-20
Identities = 30/205 (14%), Positives = 66/205 (32%), Gaps = 38/205 (18%)
Query: 143 RSLVVSEGQPVQLE-CFAGGHPTPRISWRRENNAILPTGGSIYRGSI--------LKIPQ 193
++ + E V+ ++++ I G Y+ I + + +
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE--GPKYKMHIDRNTGIIEMFMEK 67
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAV-----------EVEFAPVITVPKPRLGQALQ-- 240
+ ED GTY ++G + V E + I P + L
Sbjct: 68 LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 127
Query: 241 ----YDMDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295
++ L+C V IVW K++ + ++ ++ + T+ +
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYKDE--REISVDEKHDFKD-------GICTLLITEF 178
Query: 296 EKRQYGSYICRAANKLGTSEKTVEL 320
K+ G Y + G + ++L
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKL 203
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 4e-05
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
+ + +I + + + Y + +T I + +EK Q G
Sbjct: 23 WMQAEKLSGNAKVNYIFNE--KEIFEGPKYKMHIDR------NTGIIEMFMEKLQDEDEG 74
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLR 341
+Y + + T+ TV L + + + +R
Sbjct: 75 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 114
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 1e-22
Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTG 180
+ L V PP+IS ST++ G+ Q++CF P P RI+W + N +
Sbjct: 2 SSGSSGTLTVNGPPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 181 GSIYRG----------SILKIPQITKEDRGTYY-CVAENGVGKGTRRNIAVEVEFAPVIT 229
Y S L I I + D T Y C A N G I ++ + +
Sbjct: 60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGSE--- 115
Query: 230 VPKPRLG 236
+ P G
Sbjct: 116 MSGPSSG 122
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 3e-14
Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 214 TRRNIAVEVEFAPVITVPKP---RLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLT 269
+ + + V P+I+ + G+ Q ++C + + PPP I W ++
Sbjct: 3 SGSSGTLTVNGPPIISSTQTQHALHGEKGQ----IKCFIRSTPPPDRIAWSWKENVLESG 58
Query: 270 NNQHYSISHFATADEFTDT-TIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVC 328
+ Y++ +T + T TI I Q Y C A N G+ + + L E +
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQ-TIYNCTAWNSFGSDTEIIRLKEQGSEMS 117
Query: 329 PPQT 332
P +
Sbjct: 118 GPSS 121
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 38.3 bits (89), Expect = 7e-04
Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 26/125 (20%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPISTGSSLIIRD 82
P IS +Q Q G ++KC ++ + P + W + + +G+
Sbjct: 15 PIISS-TQTQHALHGEKGQIKCFIR-STPPPDRIAWSWKEN-------VLESGT-----S 60
Query: 83 SRFAIRYDTASSTY--TLLVKDIQETD-AGYYRCQVIIGINNKI---SAEVDLQVRRPPV 136
R+ + + TL + +I D Y C N + + L+ + +
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAW----NSFGSDTEIIRLKEQGSEM 116
Query: 137 ISDNS 141
+S
Sbjct: 117 SGPSS 121
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 2e-22
Identities = 27/179 (15%), Positives = 59/179 (32%), Gaps = 9/179 (5%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G +V L + + W+ + + + + + + + R + +Y+
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL-NFTQSYS 71
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + +++ D G YR Q+ + K+S+ +R+ I + L + + L C
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 158 FA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
W N + ++ Y C+AEN V +
Sbjct: 132 SVEDADDNVSFRWEALGNTLSSQP----NLTV--SWDPRISSEQDYTCIAENAVSNLSF 184
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-10
Identities = 29/202 (14%), Positives = 54/202 (26%), Gaps = 39/202 (19%)
Query: 141 STRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAIL-------------------PTG 180
+ + G+ V L F G I+W ++
Sbjct: 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQAL 239
+ + L++ + ED G+Y + I V +L Q +
Sbjct: 64 LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM 123
Query: 240 QYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298
++ L C VE A + W L++ + ++S
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALG--NTLSSQPNLTVSW---------------DPRIS 166
Query: 299 QYGSYICRAANKLGTSEKTVEL 320
Y C A N + +V
Sbjct: 167 SEQDYTCIAENAVSNLSFSVSA 188
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 3e-21
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR 185
++ + R P I+ N + S G+ +++ C A G+P P+I W ++N ++ G + +
Sbjct: 2 QLTVLERVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 186 --GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229
L I ++ KED G Y C A + +G + +E A T
Sbjct: 61 DGNRNLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQEKT 105
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 6e-11
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS 275
R + V AP IT ++ +++ C PPP I+W K++ + L +
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDN--ETLVEDSGIV 58
Query: 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + + + K G Y C+A + LG ++
Sbjct: 59 LKD-------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 29/125 (23%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
+ PTI+ + Q IG ++E+ C+ P ++W K +
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTAS---GNPPPQIMWFKDNE------------- 49
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRP 134
++ DS ++ L ++ +++ D G Y CQ ++G E +
Sbjct: 50 -TLVEDSGIVLKDGNR----NLTIRRVRKEDEGLYTCQACSVLG---CAKVEAFFIIEGA 101
Query: 135 PVISD 139
++
Sbjct: 102 QEKTN 106
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 4e-21
Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 23/181 (12%)
Query: 38 IGGTVELKCS-VQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
+G + L Q + D I W K K + +
Sbjct: 13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRK--EKETFKEKDTYKL-----FKN 65
Query: 96 YTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQ 154
TL +K ++ D Y+ + N + DL+++ ++ +
Sbjct: 66 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV------SKPKISWTCINTT 119
Query: 155 LECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
L C P ++ + + L + + T + C A N V K +
Sbjct: 120 LTCEVMNGTDPELNLYQ-DGKHLKLSQRVI------THKWTTSLSAKFKCTAGNKVSKES 172
Query: 215 R 215
Sbjct: 173 S 173
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 3e-18
Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 39/199 (19%)
Query: 138 SDNSTRSLVVSEGQPVQLEC--FAGGHPTPRISWRRENN----AILPTGGSIYRGS---- 187
+ + GQ + L+ F I W + ++ A ++
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61
Query: 188 -----ILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAVEVEFAPVITVPKPRLGQALQY 241
LKI + +D+ Y + GK + +++ V KP++
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI-QER---VSKPKISWTCI- 116
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
+ L C V P + ++ + L +Q + T+
Sbjct: 117 NTTLTCEVMNGTDPELNLYQDG--KHLKLSQRVITHKWTTSLS----------------A 158
Query: 302 SYICRAANKLGTSEKTVEL 320
+ C A NK+ +
Sbjct: 159 KFKCTAGNKVSKESSVEPV 177
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 4e-20
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 122 KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181
+ +R P+ +S V EG V+LEC P P++ W+R N +
Sbjct: 3 HHHHHHSHEHKRAPMFIYK-PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTD 61
Query: 182 SIYR------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
I L I + K+D G Y A N G T N ++V P T+P
Sbjct: 62 RISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARPNQTLP 116
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 7e-12
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 210 VGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVL 268
+G + + E + AP+ P+ + L+ + LEC + A PPP + W + + + V
Sbjct: 1 MGH-HHHHHSHEHKRAPMFIYK-PQSKKVLEGDSVKLECQISAIPPPKLFWKRNN-EMVQ 57
Query: 269 TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVC 328
N S+ D T+ + + K+ G Y A N+ G + L +
Sbjct: 58 FNTDRISLYQ----DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL---DVTAR 110
Query: 329 PPQTQP 334
P QT P
Sbjct: 111 PNQTLP 116
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-05
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 21/103 (20%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G +V+L+C + A P + W + + R ++ D + T
Sbjct: 30 GDSVKLECQIS-AIPPPKLFWKR-------------NNEMVQFNTDRISLYQDN-TGRVT 74
Query: 98 LLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVIS 138
LL+KD+ + DAG+Y + G + L V P +
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAG---VTTCNTRLDVTARPNQT 114
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 6e-20
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKI 191
PPVI + V+ L C A G P P I WR++ + +L+I
Sbjct: 8 PPVIR-QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
D G Y C+A G+ + +EV+ V P
Sbjct: 67 RYAKLGDTGRYTCIASTPSGE-ATWSAYIEVQEFGVPVQP 105
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 3e-11
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
PVI A+ L C P P I+W K D V T +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRK-DGVLVSTQDSRIKQ-------- 58
Query: 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF--ESIIPVCPPQTQPSELLP 339
+ +++ + G Y C A+ G + + + E +PV PP+ L+P
Sbjct: 59 LENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIP 115
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 24/134 (17%), Positives = 39/134 (29%), Gaps = 30/134 (22%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I Q + GT L C A P ++W K G + +
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCV---ATGSPVPTILWRK-------------DGVLVSTQ 52
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPPVISD 139
DSR + L ++ + D G Y C G + + ++V+ V
Sbjct: 53 DSRIKQLENG-----VLQIRYAKLGDTGRYTCIASTPSG---EATWSAYIEVQEFGVPVQ 104
Query: 140 -NSTRSLVVSEGQP 152
+ P
Sbjct: 105 PPRPTDPNLIPSAP 118
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 8e-20
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
I S + G + L+C A G P P W + N L + +P
Sbjct: 3 KLQIC-VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETK----KLYMVPY 56
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+ E +GTY+C N + + + ++
Sbjct: 57 VDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 24/94 (25%)
Query: 226 PVITV-PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281
I V P G L L+C P P W K + + Y + +
Sbjct: 4 LQICVEPTSQKLMPGSTLV----LQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDL 59
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315
+ G+Y C N + +
Sbjct: 60 EHQ----------------GTYWCHVYNDRDSQD 77
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 31/114 (27%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
I Q G T+ L+C A P W K + PL T ++
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCV---AVGSPIPHYQWFKNE-----LPLTHETKKLYMVP 55
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ G Y C V +++ S +V++ +
Sbjct: 56 Y--------------------VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 8e-20
Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 28/194 (14%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G V L Y + W+ K+ E + +S F R D +
Sbjct: 14 GSNVTLTILKHPLASYQRLTWLHTTNQKILE---YFPNGKKTVFESVFKDRVDLDKTNGA 70
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + ++ + D G Y +++ + ++ ++V ++ ++ E L C
Sbjct: 71 LRIYNVSKEDRGDYYMRML--HETEDQWKITMEVYEMV------SKPMIYWECSNATLTC 122
Query: 158 FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217
+ + + + R + C A N V + +
Sbjct: 123 EVLEGTDVELKLYQGKEHLRSLRQKT-------MSYQWTNLRAPFKCKAVNRVSQESEM- 174
Query: 218 IAVEVEFAPVITVP 231
V+ P
Sbjct: 175 --------EVVNCP 180
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-11
Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 43/200 (21%)
Query: 139 DNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRR---------ENNAILPTGGSIYRGSI 188
D S ++ G V L R++W N S+++ +
Sbjct: 3 DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV 62
Query: 189 --------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ 240
L+I ++KEDRG YY + + I +EV + V KP +
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHE--TEDQWKITMEV-YEMV---SKPMIYWECS 116
Query: 241 YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
L C V + + + L + + ++S+ T
Sbjct: 117 N-ATLTCEVLEGTDVELKLYQGK--EHLRSLRQKTMSYQWTNLR---------------- 157
Query: 301 GSYICRAANKLGTSEKTVEL 320
+ C+A N++ + +
Sbjct: 158 APFKCKAVNRVSQESEMEVV 177
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 2e-19
Identities = 51/332 (15%), Positives = 89/332 (26%), Gaps = 58/332 (17%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP----VIWMKVDRNKVTEPLPISTGSSLII 80
T+S S ++ G L +V + P W K D
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHE------------- 48
Query: 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN 140
++T TL V D +AG Y+ V + +I +
Sbjct: 49 ------------NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNI 96
Query: 141 S-TRSLVVSEGQPVQLEC---FAGGHPTP-----RISWRRENNAILPTGGSIYRGSILKI 191
+ + VS V+L F+GG SW + + I T + I
Sbjct: 97 TEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT-------QDITI 149
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR-----LGQALQYD---- 242
+ T + G Y + + LG + +
Sbjct: 150 QEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVS 209
Query: 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY-- 300
D+ P I + ++ + + F+ T + E Y
Sbjct: 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDD 269
Query: 301 -GSYICRAANKLGTSEKTVELFESIIPVCPPQ 331
+ C A ++TVE+ S C +
Sbjct: 270 TAKFWCVAKLYQQIEDETVEVAASTSRKCSME 301
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 4e-14
Identities = 29/218 (13%), Positives = 57/218 (26%), Gaps = 39/218 (17%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPR---ISWRRENNAILPTGGSIYRGSIL 189
+S S G L G P P +W +++ ++
Sbjct: 2 AFTVSIQSN-KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLT----- 55
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQY--DMDLEC 247
+ T E+ G+Y ++ + + +E A +I + D++L
Sbjct: 56 -VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 248 HVEAY---PPPAIV-----WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299
V+ P W K + V+ Q +I F
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGED--VIDTTQDITIQEFTADKN--------------- 157
Query: 300 YGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSEL 337
G Y + + S + + + Q
Sbjct: 158 -GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESK 194
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 3e-19
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS------ 182
Q PP I + L+VS+G+P L C A G PTP I W + +
Sbjct: 4 RQEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 183 IYRGSILKIPQI-----TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV 230
+ L +I ++ D G Y CVA N +G+ + ++EV A
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-08
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 221 EVEFAPVITV-PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSI 276
+ +F P I P G+ L C E P P I W K + + ++
Sbjct: 5 QEDFPPRIVEHPSDLIVSKGEPAT----LNCKAEGRPTPTIEWYKGGER--VETDKDDPR 58
Query: 277 SHFATADEFTDTTIRVITIEKRQY--GSYICRAANKLGTS 314
SH + +R++ K + G Y+C A N LG +
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 84.1 bits (207), Expect = 4e-19
Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 21/202 (10%)
Query: 39 GGTVELKCSVQY-------AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS---RFAIR 88
G V + CS Y + V W + + + ++ RF +
Sbjct: 15 GLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLL 74
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVISDNSTRSL 145
D +L + D + D G Y +V G + K +++L+V D
Sbjct: 75 GDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE- 133
Query: 146 VVSEGQPVQLEC----FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGT 201
+ G+P +L C P SW NA+ P R S L + ++
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTG--NALSPLDPETTRSSELTLTPRPEDHGTN 191
Query: 202 YYCVAEN-GVGKGTRRNIAVEV 222
C + G T R + + V
Sbjct: 192 LTCQMKRQGAQVTTERTVQLNV 213
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-06
Identities = 38/217 (17%), Positives = 63/217 (29%), Gaps = 52/217 (23%)
Query: 143 RSLVVSEGQPVQLEC-------FAGGHPTPRISWRRENNAILPTG--------------- 180
+S+ V EG V + C P + W R+
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 181 -------GSIYRGSI-LKIPQITKEDRGTYYCVAENGVG-KGTRRNIAVEVEFAPVITVP 231
G + + + L I ED G+Y+ E G K + + + +E +I P
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127
Query: 232 KPRLGQALQ--YDMDLECHV----EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEF 285
+ L+ L C + EA PP W + S E
Sbjct: 128 DIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPED 187
Query: 286 TDTTIRVITIEKRQYGSYICRAANKLG--TSEKTVEL 320
+ C+ + T+E+TV+L
Sbjct: 188 HG-------------TNLTCQMKRQGAQVTTERTVQL 211
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 5e-19
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
P SL+V G +QL C I+W R+ ++ + + G +++
Sbjct: 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRD 66
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
D G Y CV + G T +V V
Sbjct: 67 SIPADSGLYACVTSSPSGSDT-TYFSVNV 94
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 9e-06
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 21/106 (19%)
Query: 220 VEVEFAPVITVPKPR-----LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274
+ + P + G LQ L C + +I W+++ Q L +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQ----LRCRLRD-DVQSINWLRDGVQ--LVESNRT 55
Query: 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
I+ + V G Y C ++ G+ +
Sbjct: 56 RIT---------GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 5e-19
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSILKI 191
PP+I + ++ L+C A G P P ISW +E +I L+I
Sbjct: 8 PPIILQ-GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66
Query: 192 PQITKEDRGTYYCVAENGVGK 212
+ D GTY CVA + G+
Sbjct: 67 KNLRISDTGTYTCVATSSSGE 87
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-09
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L+C P P I W+KE + +I T+++ + G+Y
Sbjct: 28 LKCKATGDPLPVISWLKEG-FTFPGRDPRATI--------QEQGTLQIKNLRISDTGTYT 78
Query: 305 CRAANKLGTSEKTVEL 320
C A + G + + L
Sbjct: 79 CVATSSSGETSWSAVL 94
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-06
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 29/112 (25%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I Q + GT LKC A P + W+K G + R
Sbjct: 9 PIILQGPANQTLAVDGTALLKCK---ATGDPLPVISWLK-------------EGFTFPGR 52
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQV 131
D R I+ TL +K+++ +D G Y C G + S L V
Sbjct: 53 DPRATIQEQG-----TLQIKNLRISDTGTYTCVATSSSG---ETSWSAVLDV 96
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 82.9 bits (204), Expect = 1e-18
Identities = 28/197 (14%), Positives = 56/197 (28%), Gaps = 11/197 (5%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA--ILPTGGSI--YRGSIL 189
V + + ++ + V + C +S +P G I
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV---PKPRLGQALQYDMDLE 246
IP G +C A+ V V + V P + ++ + L
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK---RQYGSY 303
C I + E + + + + + +TI+ G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 304 ICRAANKLGTSEKTVEL 320
C A++ L T + + +
Sbjct: 187 TCAASSGLMTKKNSTFV 203
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 3e-18
Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 34/206 (16%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
TV + C + + V K P I +D S
Sbjct: 24 NKTVVIPCLGSIS-NLNVSLCARYPEKRFVP-------------DGNRISWD---SKKGF 66
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV--ISDNSTRSLVVSEGQPVQLE 156
+ + AG C+ I + S + V + + + + + +S G+ + L
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 157 CFAGGHPTPRISWR-RENNAILPTGGSIYR-------------GSILKIPQITKEDRGTY 202
C A I + ++ + R S L I +T+ D+G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVI 228
C A +G+ + + V V P+
Sbjct: 187 TCAASSGLMT-KKNSTFVRVHEDPIE 211
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 1e-18
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG----G 181
+ I RS+ V EG+ + C G P P ++W R+ + +
Sbjct: 6 HHSSKTTLAARIL-TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT 64
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212
+ S +I + D G Y V EN GK
Sbjct: 65 TTKYKSTFEISSVQASDEGNYSVVVENSEGK 95
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 9e-11
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 219 AVEVEFAPVITVPKPR-----LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQH 273
+ + A I PR G++ + C + P P + W+++ QVL+ +
Sbjct: 8 SSKTTLAARILTK-PRSMTVYEGESAR----FSCDTDGEPVPTVTWLRKG--QVLSTSAR 60
Query: 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ ++ +T + +++ G+Y N G E L
Sbjct: 61 HQVTT-----TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 4e-18
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
S +V G +QL C I+W R+ + + + G +++ D G Y
Sbjct: 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLY 69
Query: 203 YCVAENGVGKGTRRNIAVEVEFAP 226
CV + G +V V A
Sbjct: 70 ACVTSSPSGS-DTTYFSVNVSDAL 92
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C + +I W+++ Q L + I+ + V G Y
Sbjct: 23 LRCRLRD-DVQSINWLRDGVQ--LAESNRTRIT---------GEEVEVQDSVPADSGLYA 70
Query: 305 CRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
C ++ G+ + ++ + PS
Sbjct: 71 CVTSSPSGSDTTYFSV--NVSD--ALPSGPS 97
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 2e-04
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 30/116 (25%)
Query: 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPISTGSSLIIR 81
+ + + + G ++L+C ++ D + W++ L S
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLR---DDVQSINWLRDGV-----QLAES-------- 46
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPP 135
+R I + + V+D D+G Y C G + + V
Sbjct: 47 -NRTRITGEE------VEVQDSVPADSGLYACVTSSPSG---SDTTYFSVNVSDAL 92
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 5e-18
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY 184
+ + P S + V EGQ L+C G P PRI+W N + S
Sbjct: 2 SSGSSGMEVAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVPRITWLL-NGQPIQYARSTC 59
Query: 185 RGSI--LKIPQITKEDRGTYYCVAENGVGK 212
+ L I ED GTY C+AEN +G+
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQ 89
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 8e-08
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 219 AVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
+ +E AP + + ++ D L+C V P P I W+ Q + + +
Sbjct: 5 SSGMEVAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNG--QPIQYARSTCEA 61
Query: 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
A I+ E G+Y C A N LG + +
Sbjct: 62 GVAE------LHIQDALPEDH--GTYTCLAENALGQVSCSAWV 96
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 1e-17
Identities = 29/197 (14%), Positives = 56/197 (28%), Gaps = 32/197 (16%)
Query: 38 IGGTVELKC-SVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
+G + L + Q D V W + V E ++ F I +
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWER-GSTLVAE---FKRKMKPFLKSGAFEI-----LAN 60
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQL 155
L +K++ D+G Y + N L +R ++S + ++ E L
Sbjct: 61 GDLKIKNLTRDDSGTYNVT-VYSTNGTRILNKALDLRILEMVS----KPMIYWECSNATL 115
Query: 156 ECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
C + + + + R + C A N V + +
Sbjct: 116 TCEVLEGTDVELKLYQGKEHLRSLRQKT-------MSYQWTNLRAPFKCKAVNRVSQESE 168
Query: 216 RNIAVEVEFAPVITVPK 232
V+ P+
Sbjct: 169 ---------MEVVNCPE 176
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 2e-15
Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 37/189 (19%)
Query: 146 VVSEGQPVQLEC--FAGGHPTPRISWRRENNAILPTGGSIYR------------GSILKI 191
+ G + L F + W R + + + G LKI
Sbjct: 7 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD-LKI 65
Query: 192 PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA 251
+T++D GTY + G ++ + V KP + + L C V
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILN---KALDLRILEMVSKPMI-YWECSNATLTCEVLE 121
Query: 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311
+ + + L + + ++S+ T + C+A N++
Sbjct: 122 GTDVELKLYQGK--EHLRSLRQKTMSYQWTNLR----------------APFKCKAVNRV 163
Query: 312 GTSEKTVEL 320
+ +
Sbjct: 164 SQESEMEVV 172
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-17
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY 184
+ V+ G V L C P+P+I W ++ + +
Sbjct: 1 GSSGSSGLEEVQLVVEP-EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL-----PLP 54
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEV 222
+L +P+I +D+GTY CVA + R +++ +
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-09
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 16/76 (21%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C V A P P I W+K+ L + + D+ G+Y
Sbjct: 30 LTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQ----------------GTYS 73
Query: 305 CRAANKLGTSEKTVEL 320
C A + +++ +
Sbjct: 74 CVATHSSHGPQESRAV 89
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 9e-08
Identities = 27/118 (22%), Positives = 37/118 (31%), Gaps = 28/118 (23%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSS 77
++ + + GGTV L C V AQ P I WMK PLP+
Sbjct: 5 SSGLEEVQLVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGV-----PLPLPPSPV 58
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVI-IGINNKISAEVDLQVRRP 134
LI+ + I D G Y C + S V + + P
Sbjct: 59 LILPE--------------------IGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 7e-17
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 18/107 (16%)
Query: 124 SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI 183
S+ + + + S G V+L C A G P P I W E +
Sbjct: 11 SSGLVPRGSHMAGFV-QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69
Query: 184 YRG-----------------SILKIPQITKEDRGTYYCVAENGVGKG 213
+ G S + I + +ED GTY C A N +
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN 116
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-08
Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 14/128 (10%)
Query: 200 GTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIV 258
G+ + + G + P Q ++L C P P I
Sbjct: 2 GSSHHHHHHSSG------LVPRGSHMAGFVQ-APLSQQRWVGGSVELHCEAVGSPVPEIQ 54
Query: 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIR---VITIEKRQY---GSYICRAANKLG 312
W E +Q + + I+I+ G+Y CRA+N
Sbjct: 55 WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
Query: 313 TSEKTVEL 320
+ T
Sbjct: 115 RNHLTRAP 122
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-06
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGS 76
Q + +GG+VEL C P + W + + G+
Sbjct: 17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAV---GSPVPEIQWWFEGQGPNDICSQLWDGA 73
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113
+ Y + T+ + + E D G Y C
Sbjct: 74 R--LDRVHIHATYHQ-HAASTISIDTLVEEDTGTYEC 107
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 9e-17
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 131 VRRPPVI--SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---R 185
+ PP I + ++ + G+ + L G P P++ W + + + +
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF 77
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
++ + Q + D G Y + K T I + V
Sbjct: 78 DTVFFVRQAARSDSGEYELSVQIENMKDT-ATIRIRV 113
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-09
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 206 AENGVGKGTRRNIAVEVEFAPVITVPKP-------RLGQALQYDMDLECHVEAYPPPAIV 258
+ G + E+ P I +P+ ++G+ L L + P P +V
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLN----LVVPFQGKPRPQVV 57
Query: 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
W K + T+ H S DT V + G Y + T+
Sbjct: 58 WTK-GGAPLDTSRVHVRTSD-------FDTVFFVRQAARSDSGEYELSVQIENMKDTATI 109
Query: 319 EL 320
+
Sbjct: 110 RI 111
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 24/107 (22%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
Q I+ +G + L Q P V+W K + SR +R
Sbjct: 32 QTYIRKVGEQLNLVVPFQ---GKPRPQVVWTKGGA---------------PLDTSRVHVR 73
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ V+ +D+G Y V I N K +A + ++V
Sbjct: 74 TSDFDTV--FFVRQAARSDSGEYELSVQI-ENMKDTATIRIRVVEKA 117
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 1e-16
Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 30/193 (15%)
Query: 36 KDIGGTVELKCSVQY----AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD- 90
K++ L C + W K + ++ S + + R
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEK------KMVLTMMSGDMNIWPEYKNRTIF 59
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVII----GINNKISAEVDLQVRRPPVISDNSTRSLV 146
++ ++++ ++ +D G Y C V+ + AEV L V+ S
Sbjct: 60 DITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF--PTPSISDFE 117
Query: 147 VSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRG---------SILKIPQITK 196
+ ++ C GG P P +SW + ++ + S L
Sbjct: 118 IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---M 174
Query: 197 EDRGTYYCVAENG 209
++ C+ + G
Sbjct: 175 TTNHSFMCLIKYG 187
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 7e-14
Identities = 27/196 (13%), Positives = 51/196 (26%), Gaps = 28/196 (14%)
Query: 146 VVSEGQPVQLECF----AGGHPTPRISWRRENNAIL------PTGGSIYRGSI------- 188
+ L C RI W++E +L Y+
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 189 --LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD-- 244
+ I + D GTY CV +R EV + P P + +
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR 124
Query: 245 -LECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
+ C +P P + W++ + + + + + S
Sbjct: 125 RIICSTSGGFPEPHLSWLENGEE-----LNAINTTVSQDPETELYAVSSKLDFNMTTNHS 179
Query: 303 YICRAANKLGTSEKTV 318
++C +T
Sbjct: 180 FMCLIKYGHLRVNQTF 195
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 1e-16
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 132 RRPPVISDNST---RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR--- 185
+R P ++ R V V+ C AGG+P P + W + N I
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKV 60
Query: 186 ---GSILKIPQITKEDRGTYYCVAENGVGK 212
L + + D+G Y CV EN G
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGS 90
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-08
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
C P P + W+K + ++ + ++ G+Y
Sbjct: 28 FRCPAGGNPMPTMRWLKNG--KEFKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYT 81
Query: 305 CRAANKLGTSEKTVEL 320
C N+ G+ T L
Sbjct: 82 CVVENEYGSINHTYHL 97
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-16
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSI 188
+ PP S V EGQ V + G P P +SW R + P G +
Sbjct: 3 KAPPTFK-VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 189 --LKIPQITKEDRGTYYCVAENGVGK 212
L+I + D G Y C A N G
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGA 87
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-08
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 225 APVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
P V + D+ + V+ P P + W++ Q V + + ++
Sbjct: 5 PPTFKVS-LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNR-QPVRPDQRRFAEE-----A 57
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
E +R++ E+ G Y C+A N+ G + L
Sbjct: 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 3e-16
Identities = 27/205 (13%), Positives = 67/205 (32%), Gaps = 21/205 (10%)
Query: 38 IGGTVELKCSV---QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASS 94
+G +L C + A+ + W+ +V + + + + R
Sbjct: 18 VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVN-VYADGKEVEDRQSAPYRGRTSILRD 76
Query: 95 -----TYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE 149
L + ++ +D+G Y C + + ++++ + SD + +
Sbjct: 77 GITAGKAALRIHNVTASDSGKYLCYF---QDGDFYEKALVELKVAALGSDLHV-DVKGYK 132
Query: 150 GQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRG------SILKIPQITKEDRGTY 202
+ LEC + G +P P+I W +PT + ++ +
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGV 192
Query: 203 YCVAENGVGKGTRR-NIAVEVEFAP 226
C + + + +I++ F
Sbjct: 193 SCTIRSSLLGLEKTASISIADPFFR 217
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-12
Identities = 38/237 (16%), Positives = 64/237 (27%), Gaps = 45/237 (18%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF---AGGHPTPRISWRRENN------- 174
A++ V P + ++ G+ L C T + W +
Sbjct: 1 ADLQFSVLGP-------SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVY 53
Query: 175 -----------------AILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217
+ G + L+I +T D G Y C ++G
Sbjct: 54 ADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYE---K 110
Query: 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSI 276
VE++ A + + + + LEC YP P I W + + T
Sbjct: 111 ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEA---- 166
Query: 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQ 333
A + + C + L EKT + SI Q
Sbjct: 167 PVVADGVGLYAVAA-SVIMRGSSGEGVSCTIRSSLLGLEKTASI--SIADPFFRSAQ 220
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 3e-16
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
GGT L C V + + W + + +RD+R + + +
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQ------TLYFDDKKALRDNRIELVRAS-WHELS 72
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ V D+ +D G Y C + +++ L V P
Sbjct: 73 ISVSDVSLSDEGQYTCSL--FTMPVKTSKAYLTVLGVP 108
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-07
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 13/85 (15%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSI 188
+ T+++ V EG L C + + W L R +
Sbjct: 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 189 ---------LKIPQITKEDRGTYYC 204
+ + ++ D G Y C
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTC 88
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 18/99 (18%)
Query: 228 ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ------QVLTNNQHYSISHFAT 281
+TV G L C V+ ++ W Q + + +
Sbjct: 16 VTV---VEGG----TAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR--- 65
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + +I V + G Y C + L
Sbjct: 66 -ASWHELSISVSDVSLSDEGQYTCS-LFTMPVKTSKAYL 102
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 4e-16
Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 100 VKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLE 156
+ + + + + N+ + + + P + + + V EG + +
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFT-KTILDMEVVEGSAARFD 62
Query: 157 CFAGGHPTPRISWRRENNAILPTGGSIYR-----GSILKIPQITKEDRGTYYCVAENGVG 211
C G+P P + W +++N + + L I ++ +D Y C A N +G
Sbjct: 63 CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Query: 212 K 212
+
Sbjct: 123 E 123
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 3e-11
Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 191 IPQITKEDRGTYYCVAENGVGKGT---RRNIAVEVEFAPVITVPKPRLGQALQ-YDMDLE 246
+ + N V + P T + ++ +
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKT-ILDMEVVEGSAARFD 62
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C VE YP P ++W K+D + ++H+ I + DE + ++ + + Y C+
Sbjct: 63 CKVEGYPDPEVMWFKDD--NPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCK 116
Query: 307 AANKLGTSEKTVEL 320
A N LG + T EL
Sbjct: 117 AVNSLGEATCTAEL 130
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 20/116 (17%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G C V+ D V+W K D + F I YD +L
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNP--------------VKESRHFQIDYD-EEGNCSL 100
Query: 99 LVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPVISDNSTRSLVVSEGQP 152
+ ++ D Y C+ +N+ + + +L V + E +
Sbjct: 101 TISEVCGDDDAKYTCKA---VNSLGEATCTAELLVETMGKEGEGEGEGEEDEEEEE 153
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 4e-16
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIYRGSI----LKIPQITK 196
+ + EG PV C G+P P+I W ++ I P +I R L T
Sbjct: 16 KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 75
Query: 197 EDRGTYYCVAENGVGK 212
+D G Y +A N G+
Sbjct: 76 DDDGNYTIMAANPQGR 91
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-08
Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 225 APVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
AP + + + + + C V P P I W K D +Q+ + HY+I D
Sbjct: 8 APFFEMK-LKHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPKSDHYTIQR----D 61
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
++ G+Y AAN G T L V + PS
Sbjct: 62 LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM-----VQAVNSGPS 108
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 5e-16
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-SIYR---G 186
+ PVI + VS + A G P P W ++ AI G + G
Sbjct: 3 ISSKPVIV-TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 187 SILKIPQITKEDRGTYYCVAENGVGK 212
L+I + D G Y C +N G
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGS 87
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-08
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 22/106 (20%)
Query: 225 APVITVPKPRLGQALQ-------YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
P+ + KP + LQ P P +W K+ + +T Y +S
Sbjct: 1 GPISS--KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDG--KAITQGGKYKLS 56
Query: 278 HFATADEFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVEL 320
D + I K G Y C N G+ + +L
Sbjct: 57 E--------DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 6e-16
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSIL 189
P I S R + + G LE G P P +W ++ + + +
Sbjct: 2 KPKILTAS-RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
P + D G Y +N +G+ V V+
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-09
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 225 APVITVPKP----RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280
P I + G LE P P W D +
Sbjct: 2 KPKILTASRKIKIKAGFTHN----LEVDFIGAPDPTATWTVGD--SGAALAPELLVDA-- 53
Query: 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + T+I + ++ G+Y + N+LG E E+
Sbjct: 54 ---KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 3e-04
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 29/114 (25%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIR 81
P I S++ G T L+ P W G S
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFI---GAPDPTATWTV--------------GDSGAAL 45
Query: 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVR 132
+ SST ++ + D+G Y+ +V N+ A ++ V+
Sbjct: 46 APELLVDAK--SSTTSIFFPSAKRADSGNYKLKV----KNELGEDEAIFEVIVQ 93
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-15
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSIL 189
P I V G+ V+L G +W + I + + GS L
Sbjct: 7 GPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
I +E G Y + EN +G + + + V P
Sbjct: 66 TILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKP 101
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-09
Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 225 APVITV-PKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280
P I P+ R G++++ L V P W+K + + ++H + +
Sbjct: 7 GPQIIQFPEDQKVRAGESVE----LFGKVTGTQPITCTWMKFR--KQIQESEHMKVEN-- 58
Query: 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSE 336
+ + ++ + G Y NKLG+ + V L P PP PS
Sbjct: 59 ---SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD-PPAGTPSG 110
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-05
Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 23/120 (19%)
Query: 19 TTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSS 77
++ P I ++Q G +VEL V WMK R ++ E
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMK-FRKQIQE--------- 50
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPP 135
+ S L + ++ G Y V N A+V+L V P
Sbjct: 51 ----SEHMKVENSENGSK--LTILAARQEHCGCYTLLV---ENKLGSRQAQVNLTVVDKP 101
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-15
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT---------GG 181
V P I T + + G+P P + W + +
Sbjct: 1 VHFAPTI----TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228
L++ T + G Y +A+N GK + I+ P I
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-15
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 222 VEFAPVIT-VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280
V FAP IT + P + V+ P PA+ W +L +++
Sbjct: 1 VHFAPTITFLESPTSDH----HWCIPFTVKGNPKPALQWFYNG--AILNESKYICTKIHV 54
Query: 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
T +++ G Y A N+ G EK +
Sbjct: 55 TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-15
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS- 187
+ P I+ RS V GQ + PT + W + + Y +
Sbjct: 3 FTLDHAPRIT-LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 188 ---ILKIPQITKEDRGTYYCVAENGVGK 212
L+I +D GTY V N G+
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGE 89
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 7e-09
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 220 VEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISH 278
++ AP IT+ R + + +V++ P + W L + ++
Sbjct: 3 FTLDHAPRITLR-MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNG--VELQESSKIHYTN 59
Query: 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
T+ ++ G+Y N G + L
Sbjct: 60 -----TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-15
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GSILKIPQITKE 197
L V EG+ +++C G PTP +SW+ + + P L I +T
Sbjct: 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR 76
Query: 198 DRGTYYCVAENGVGK 212
D G Y C+A N G+
Sbjct: 77 DAGIYTCIATNRAGQ 91
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-08
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 19/119 (15%)
Query: 221 EVEFAPVITV-PKPR---LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSI 276
F P P G+ + ++C V P P + W + + + + + +
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCR----MDCKVSGLPTPDLSWQLDG--KPVRPDSAHKM 58
Query: 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
E ++ + + R G Y C A N+ G + ++EL V ++ PS
Sbjct: 59 LV----RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV-----VAAKESGPS 108
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 38.1 bits (89), Expect = 6e-04
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 22/114 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDS 83
P + G + C V P + W D V DS
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVS-GLPTPDLSWQL-DGKPVRP-------------DS 54
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQV--IIGINNKISAEVDLQVRRPP 135
+ + ++L+++ + DAG Y C G + S ++L V
Sbjct: 55 AHKMLVR-ENGVHSLIIEPVTSRDAGIYTCIATNRAG---QNSFSLELVVAAKE 104
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 7e-15
Identities = 16/114 (14%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
+++ ++ + G T+ LKC ++ + W+ I ++++S+
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSG------FTIFLNEYPVLKNSK 55
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
+ + + + ++ ++ V ++ D G Y+C ++ + EV + V
Sbjct: 56 YQLLHHS-ANQLSITVPNVTLQDEGVYKCLHY--SDSVSTKEVKVIVLATMKGE 106
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 2e-09
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 15/107 (14%)
Query: 140 NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSI------- 188
N T ++ V EGQ + L+C + W + + + +
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQ 65
Query: 189 --LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
+ +P +T +D G Y C+ + + + V V +
Sbjct: 66 LSITVPNVTLQDEGVYKCLHYSDSVS--TKEVKVIVLATMKGEFCRY 110
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-05
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTN------NQHYSISHFATADEFTDTTIRVITIEKR 298
L+C ++ W+ + N N Y + H +I V + +
Sbjct: 21 LKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH----SANQLSITVPNVTLQ 76
Query: 299 QYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRN 342
G Y C S K V++ PS PL +
Sbjct: 77 DEGVYKCL-HYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPLEH 119
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 73.4 bits (179), Expect = 7e-15
Identities = 38/318 (11%), Positives = 88/318 (27%), Gaps = 47/318 (14%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYPVIW-MKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD 90
+ I GG+V + CS Q + + + ++ P
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLP--------------------- 45
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEG 150
++ + ++ + C + + +A+ L V P + + G
Sbjct: 46 -GNNRKVYELSNV--QEDSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVG 101
Query: 151 QPVQLECFA-GGHPTPR--ISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYY-CVA 206
+ + L C GG P + R + + + ++ G + C
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRT 161
Query: 207 ENGVG-------KGTRRNIAVEVEFAPVIT--VPKPRLGQALQYDMDLECHVEAYPPPAI 257
E + + T ++ P + PR+ + + C ++ P +
Sbjct: 162 ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT-QGTVVCSLDGLFPVSE 220
Query: 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317
+ + +Q + + D F+ +T E C + E
Sbjct: 221 AQVH-----LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 275
Query: 318 VELFESIIPVCPPQTQPS 335
+ P P +
Sbjct: 276 QTVTIYSFP--APNVILT 291
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 3e-11
Identities = 35/227 (15%), Positives = 64/227 (28%), Gaps = 31/227 (13%)
Query: 19 TTAQRTPTISYIS-QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSS 77
T TP ++ + +G + L+C V+ P + V + + L
Sbjct: 80 LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG--APRANLTVVLLRGEKELKREPAVG 137
Query: 78 LIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK-------ISAEVDLQ 130
+ A T T+LV+ ++ + C+ + + + SA LQ
Sbjct: 138 ------------EPAEVTTTVLVR--RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ 183
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSIL 189
P V+ + C G P Y
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF 243
Query: 190 KIP---QITKEDRGTYYCVAENGVGKG---TRRNIAVEVEFAPVITV 230
+T ED GT +G T + + + AP + +
Sbjct: 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 2e-10
Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 30/210 (14%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITK-EDRGT 201
+++ G V + C + LP + G+ K+ +++ ++
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGIETP----LPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 202 YYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQYDMDLECHVEAYPPPA--- 256
C + G+ T + + V + P V P P + ++ L C VE P A
Sbjct: 63 PMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGK-NLTLRCQVEGGAPRANLT 120
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG---- 312
+V ++ + + + E + T V+ ++ CR L
Sbjct: 121 VVLLRGEKE----------LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGL 170
Query: 313 ----TSEKTVELFESIIPVCPPQTQPSELL 338
+ +L ++P PPQ +L
Sbjct: 171 ELFENTSAPYQLQTFVLPATPPQLVSPRVL 200
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 7e-15
Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 13/115 (11%)
Query: 127 VDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT------- 179
V L V PP + +E G+P P + W + +
Sbjct: 1 VALTVYYPPRV----VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56
Query: 180 -GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
L + T + G Y +A+N +G + I P
Sbjct: 57 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPFPVDEVS 110
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-14
Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
Query: 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
+A+ V + P + + L+ + +E V PPP + W+ Q L ++ +
Sbjct: 1 VALTVYYPPRVVSLE---EPELRLEHCIEFVVRGNPPPTLHWLHNG--QPLRESKIIHV- 54
Query: 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSEL 337
+ E ++ + G+Y A N LGT+ +T+ P + P+
Sbjct: 55 EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPP 114
Query: 338 LPL 340
+ +
Sbjct: 115 ITV 117
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 8e-15
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSI 188
R I D + + V EG VQ C A G P P I W ++ +++
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
L++ +D GTY C+A N G + + V
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDS-MPAHLHV 475
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 225 APVITVPKP-----RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279
I K G +Q C + PPPAI+W+ + +++ + ++
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQ----FVCRADGDPPPAILWLS-PRKHLVSAKSNGRLT-- 436
Query: 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
F D T+ V + + G+Y+C AAN G L
Sbjct: 437 ----VFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-14
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GSI 188
PP ++ + EG+ +++ G P P +SW +
Sbjct: 5 PPRFI-QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 189 LKIPQITKEDRGTYYCVAENGVGK 212
L + D G Y CVA+N G+
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGE 87
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-07
Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
++ V P P + W + + ++ + + E ++ + G+Y
Sbjct: 25 MDFKVSGLPAPDVSWYLNG--RTVQSDDLHKMIV----SEKGLHSLIFEVVRASDAGAYA 78
Query: 305 CRAANKLGTSEKTVEL 320
C A N+ G + TV+L
Sbjct: 79 CVAKNRAGEATFTVQL 94
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GS 187
P + + EG V + C +P+ ISW R+ + + S + S
Sbjct: 19 APKLQGPVA--VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
L++ ++ D G Y C A N +G+ + P
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTP 114
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 8e-14
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 19/124 (15%)
Query: 200 GTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP---RLGQALQYDMDLECHVEAYPPPA 256
TY + V + +AP + P G + + C V AYP
Sbjct: 1 ATYAAASSALVPR-------GSHMYAPKLQGPVAVYTWEGNQVN----ITCEVFAYPSAT 49
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316
I W ++ Q+L ++ + +I + T + + + V + +G+Y C A N++G
Sbjct: 50 ISWFRDG--QLLPSSNYSNIKIYNTP---SASYLEVTPDSENDFGNYNCTAVNRIGQESL 104
Query: 317 TVEL 320
L
Sbjct: 105 EFIL 108
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 26/131 (19%), Positives = 38/131 (29%), Gaps = 25/131 (19%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P + G V + C V + W + + LP S S
Sbjct: 20 PKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDG-----QLLPSSN-------YSN 66
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPP-----VI 137
I ++S L V E D G Y C + IG + S E L P
Sbjct: 67 IKIYNTPSASY--LEVTPDSENDFGNYNCTAVNRIG---QESLEFILVQADTPSSPSIDQ 121
Query: 138 SDNSTRSLVVS 148
+ + + V
Sbjct: 122 VEPYSSTAQVQ 132
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-14
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-----YRGSILKIPQITKE 197
+S V +G G P P W + I + L I +T E
Sbjct: 13 QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGE 72
Query: 198 DRGTYYCVAENGVGK 212
D + A N G+
Sbjct: 73 DSASIMVKAINIAGE 87
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-07
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 8/97 (8%)
Query: 225 APVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
AP I + Q D V P P W K + +
Sbjct: 5 APKIFER-IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNG--VKIERSDRIYWYW----P 57
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
E + + + S + +A N G + L
Sbjct: 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
|
| >1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 3e-14
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 39 GGTVELKC--SVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
G T+ ++C + W K V L S+ + SRF I D + +
Sbjct: 25 GQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFF 84
Query: 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
T+ + D++E D+G+Y C++ +N +S V +
Sbjct: 85 TVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYL 119
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 5e-14
Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 23/178 (12%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
+ G V V+W K ++KV E +S S F R + + +
Sbjct: 9 VYGNVTFHVPSNVPLKE-VLWKK-QKDKVAE-----LENSEFRAFSSFKNRVYLDTVSGS 61
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
L + ++ +D Y + N + + L V ++ ++ E L C
Sbjct: 62 LTIYNLTSSDEDEYEMES---PNITDTMKFFLYVLEMV------SKPMIYWECSNATLTC 112
Query: 158 FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215
+ + + + R + C A N V + +
Sbjct: 113 EVLEGTDVELKLYQGKEHLRS-------LRQKTMSYQWTNLRAPFKCKAVNRVSQESE 163
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 3e-10
Identities = 26/202 (12%), Positives = 60/202 (29%), Gaps = 47/202 (23%)
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL------PTGGSIYRGSI------- 188
++ + V P + W+++ + + S ++ +
Sbjct: 2 SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 189 -LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
L I +T D Y + N + V V KP + + L C
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDT---MKFFLYV-LEMV---SKPMIYWECS-NATLTC 112
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
V + + ++ L + + ++S+ + C+A
Sbjct: 113 EVLEGTDVELKLYQG--KEHLRSLRQKTMSY----------------QWTNLRAPFKCKA 154
Query: 308 ANKLGTSEKTVELFESIIPVCP 329
N++ S+++ E + CP
Sbjct: 155 VNRV--SQES----EMEVVNCP 170
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 6e-14
Identities = 29/198 (14%), Positives = 45/198 (22%), Gaps = 41/198 (20%)
Query: 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCV 205
E V L C I+W ++ I + K+ RG Y C
Sbjct: 14 DYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTE---DKKKWNLGSNAKDPRGMYQCK 67
Query: 206 AENGVGK-----------GTRRNIAVEVEFAPVITVPKPRLGQALQYD------------ 242
K + A + + A K +
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 243 ---MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299
+ L C YP I+W D + + ++ D E Q
Sbjct: 128 GTTVILTC--PQYPGSEILWQHND--KNIGGDEDDKNIG-----SDEDHLSLKEFSELEQ 178
Query: 300 YGSYICRAANKLGTSEKT 317
G Y+C
Sbjct: 179 SGYYVCYPRGSKPEDANF 196
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 3e-11
Identities = 28/206 (13%), Positives = 47/206 (22%), Gaps = 57/206 (27%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G+V L C + + W K + I +
Sbjct: 18 DGSVLLTCDAEAK---NITWFKDGK-------MIGFLTE----------------DKKKW 51
Query: 99 LVKDIQETDAGYYRCQ-------------------------VIIGINNKISAEVDLQVRR 133
+ + G Y+C+ K A+ D
Sbjct: 52 NLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGN 111
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---GSILK 190
+ T V G V L C +P I W+ + I L
Sbjct: 112 EEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 169
Query: 191 IPQITK-EDRGTYYCVAENGVGKGTR 215
+ + ++ E G Y C +
Sbjct: 170 LKEFSELEQSGYYVCYPRGSKPEDAN 195
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-13
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 23/117 (19%)
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-- 185
D+ + I +S G+ + L C A I + E + +
Sbjct: 9 DVVLSPSHGIE--------LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 186 ------------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV 230
S L I +T+ D+G Y C A +G+ + + V V P +
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAF 116
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 3e-06
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 227 VITVPKP---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
V++ +G+ L L C I + E + + + +
Sbjct: 11 VLSPSHGIELSVGEKLV----LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 284 EFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVEL 320
+ +TI+ G Y C A++ L T + + +
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 4e-06
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + L C+ + + + + + + L+ RD + + TL
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQH------KKLVNRDLKTQSGSEMKKFLSTL 76
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
+ + +D G Y C G+ K ++V P ++
Sbjct: 77 TIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVA 115
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 2e-13
Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 17/198 (8%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSIL 189
++ P+ + + V+ G QL C + WR + + L S S+L
Sbjct: 3 LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS-LGAVQSDTGRSVL 61
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV 249
+ + GT CV G + + + V P P + D ++ C
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRT-FQHTVQLLVYAFPNQLTVSPA--ALVPGDPEVACTA 118
Query: 250 EAYPPP---AIVWIKEDTQQVLTNNQHYSISHFATADE--------FTDTTIRVITIEKR 298
P A+ + Q L Q +E F T +
Sbjct: 119 HKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGT 178
Query: 299 QYG-SYICRAANKLGTSE 315
+ C+A +L E
Sbjct: 179 PVPPALYCQATMRLPGLE 196
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 7e-13
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 4/87 (4%)
Query: 139 DNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---IYRGSILKIPQIT 195
+ + G + + C ++ N +L G + R L ++
Sbjct: 250 EYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEV 222
ED G Y C A T ++ ++V
Sbjct: 310 VEDGGVYTCYAMGETFNET-LSVELKV 335
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 15/120 (12%)
Query: 216 RNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ 272
NI F + + LG L + C + + W+ +QVL+
Sbjct: 238 HNIFSLDFFNCSEYKESAWEAHLGDTLT----IRCDTKQQGMTKV-WVSPSNEQVLSQGS 292
Query: 273 HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQT 332
+ S+S + + ++ G Y C A + +VEL +
Sbjct: 293 NGSVS-------VRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHD 345
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 22/120 (18%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T+ ++C + Q +W+ +V + S+ +R+ L
Sbjct: 261 GDTLTIRCDTK-QQGMTKVWVSPSNEQVL---SQGSNGSVSVRNG-------------DL 303
Query: 99 LVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLE 156
K +Q D G Y C + + V+L+V + + T + Q E
Sbjct: 304 FFKKVQVEDGGVYTC---YAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHPQFE 360
|
| >2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 9e-13
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G++ ++C Y Y W + + + L ++GS ++ R +I+ + + T
Sbjct: 17 RGSLTVQC--VYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRT 74
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
+T+ ++D+ +TDA Y C + N + V + + PV + ++ S
Sbjct: 75 FTVTMEDLMKTDADTYWCGIEKT-GNDLGVTVQVTIDPAPVTQEETSSS 122
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 9e-13
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTG--GSIYRG--SILKIPQITKE 197
V EG V+ C + +++W + + Y +IL + ITK
Sbjct: 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKL 68
Query: 198 DRGTYYCVAENGVGK 212
D GTY C N G+
Sbjct: 69 DDGTYRCKVVNDYGE 83
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-08
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 245 LECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303
C +E Y + W + L N++ Y I++ E + V I K G+Y
Sbjct: 21 YVCKIENYDQSTQVTWYFGV--RQLENSEKYEITY-----EDGVAILYVKDITKLDDGTY 73
Query: 304 ICRAANKLGTSEKTVELF 321
C+ N G ELF
Sbjct: 74 RCKVVNDYGEDSSYAELF 91
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 30/112 (26%)
Query: 33 EQIKDI----GGTVELKCSVQYAQDYP--VIWMKVDRNKVTEPLPISTGSSLIIRDSRFA 86
QI GG V+ C ++ D V W R + ++
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIE-NYDQSTQVTWYFGVR--------------QLENSEKYE 50
Query: 87 IRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI---SAEVDLQVRRPP 135
I Y+ L VKDI + D G YRC+V+ N S+ +L V+
Sbjct: 51 ITYE--DGVAILYVKDITKLDDGTYRCKVV----NDYGEDSSYAELFVKGVR 96
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI---- 188
PVI + L V+EG +L+C A +SW N ++ G R ++
Sbjct: 340 YAPVIVE-PPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 189 -LKIPQITKEDRGTYYCVAENGVGKGTRR 216
L +T +D G Y C+ N VG T
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTAS 426
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEF 285
PVI P L +L+C ++ WI V+T+ ++
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWIT-PNGTVMTHG-----AYKVRIAVL 394
Query: 286 TDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+D T+ + + G Y C +N +G + + L
Sbjct: 395 SDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-12
Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 24/173 (13%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD-SRFAIRYDTASSTYT 97
G+V+++C Q ++ + + + +N + I F I +
Sbjct: 23 DGSVKIQC--QAIREAYLTQLMIIKN--STYREIGRRLKFWNETDPEFVIDH-------- 70
Query: 98 LLVKDIQETDAGYYRCQVIIGINN-KISAEVDLQVRR---PPVISDNSTRSLVVSEGQPV 153
+ AG Y+CQ IG + S ++L V P +S + R LV+ G+ +
Sbjct: 71 -----MDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLS--ADRGLVLMPGENI 123
Query: 154 QLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVA 206
L C + P R S +E LP S + + + G Y C
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYG 176
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 20/185 (10%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYRGS---I 188
P IS S S V+ V+++C ++ + + +
Sbjct: 8 PMPFISAKS--SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE 65
Query: 189 LKIPQITKEDRGTYYCVAENGVG---KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDL 245
I + G Y C G + V + L ++ L
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISL 125
Query: 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305
C P KE + QH S H A F ++ + + G Y C
Sbjct: 126 TCSSAHIPFDRFSLAKEGELSLP---QHQSGEHPA---NF---SLGPVDLNVS--GIYRC 174
Query: 306 RAANK 310
Sbjct: 175 YGWYN 179
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 3e-12
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
GGTV LKC V+ +D + W + + G +RD+R + T ++
Sbjct: 53 GGTVVLKCQVKDHEDSSLQWSNPAQQTLY------FGEKRALRDNRIQLVTST-PHELSI 105
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ ++ D G Y C + +A+ + V P
Sbjct: 106 SISNVALADEGEYTCSI--FTMPVRTAKSLVTVLGIP 140
|
| >1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 1e-07
Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 14/105 (13%)
Query: 138 SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSI----- 188
S T V G V L+C H + W L G R +
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 189 ----LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE-FAPVI 228
+ I + D G Y C + + + V P+I
Sbjct: 101 HELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPII 145
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 8e-12
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 128 DLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-----S 182
+ ++ + VS+G ++L + W + I +G S
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFES 67
Query: 183 IYRGSILKIPQITKEDRGTYYCVAEN 208
I L I Q + D Y CV
Sbjct: 68 IGAKRTLTISQCSLADDAAYQCVVGG 93
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 219 AVEVEFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS 277
+++ + + Q + + + L + + W+K Q++ + Y
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNG-QEIQMSGSKYIFE 66
Query: 278 HFATADEFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVE 319
R +TI + +Y C + ++E V+
Sbjct: 67 S--------IGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFVK 103
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 9e-12
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 18/118 (15%)
Query: 124 SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG--- 180
+ +Q RR +I D + V EG C + W + +
Sbjct: 4 GSSGLVQGRRVHIIED--LEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNE 61
Query: 181 -----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
G + L + Q+ +D GT Y A + + V P +
Sbjct: 62 IDAQPGGYHV---LTLRQLALKDSGTIYFEAGDQRASAA-----LRVTEKPSVFSRSG 111
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-06
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 28/124 (22%)
Query: 18 LTTAQRTPTISYISQEQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIS 73
R I E ++D+ G + +C + A PV W
Sbjct: 7 GLVQGRRVHII----EDLEDVDVQEGSSATFRCRISPANYEPVHWFL------------- 49
Query: 74 TGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133
+ + + I + L ++ + D+G + A L+V
Sbjct: 50 -DKTPLHANELNEIDAQP-GGYHVLTLRQLALKDSGTIYFEA-----GDQRASAALRVTE 102
Query: 134 PPVI 137
P +
Sbjct: 103 KPSV 106
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 12/91 (13%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
C + + W + L N+ I + V+T+ + G
Sbjct: 33 FRCRISPANYEPVHWFLDK--TPLHANELNEI-------DAQPGGYHVLTLRQLALKDSG 83
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQT 332
+ A ++ ++ V S+ P +
Sbjct: 84 TIYFEAGDQRASAALRVTEKPSVFSRSGPSS 114
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI---- 188
P I D + R L +SEG+ +L+C P + W N +L R S+
Sbjct: 351 SAPFIMD-APRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG 407
Query: 189 -LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
L + D G Y C+ N G + + + V
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNV 441
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 8/106 (7%)
Query: 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
AP I L + +L+C P ++ W+ VL++ S
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLL-PNGTVLSHA-----SRHPRISV 403
Query: 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP 330
D T+ + G Y C N G S + L S
Sbjct: 404 LNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449
|
| >2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-11
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G V L S ++Y + W K+ E +S+F R +
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVE----WDSRKSKYFESKFKGRVRLDPQSGA 74
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP---PVISDN 140
L + +Q+ D Y +V+ N+ ++ LQV P PVI
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIE 120
|
| >2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 2e-04
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 21/109 (19%)
Query: 144 SLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAIL--------PTGGSIYRGSI------ 188
+ V G V L + +++W + + S ++G +
Sbjct: 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72
Query: 189 --LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL 235
L I ++ KED TY G I ++V P VPKP +
Sbjct: 73 GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV-LDP---VPKPVI 117
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-11
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITK 196
G+ V+LEC + W + I+P S YR IL I TK
Sbjct: 15 EDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73
Query: 197 EDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
D Y + G ++V+++ P
Sbjct: 74 ADAAEYSVMTTGGQSSA---KLSVDLKSGP 100
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 7e-06
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G VEL+C V D V W K I G SR+ IR + + L
Sbjct: 22 GERVELECEVSED-DANVKWFKNGE-------EIIPGPK-----SRYRIRVE--GKKHIL 66
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+++ + DA Y + SA++ + ++ P
Sbjct: 67 IIEGATKADAAEYSVMT---TGGQSSAKLSVDLKSGP 100
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-11
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
L V + +C W + + P+ G ++ L I +
Sbjct: 16 ADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHK---LVIDDVR 71
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEF 224
ED G Y V + + + +E++
Sbjct: 72 PEDEGDYTFVPDGYALSLSAKLNFLEIKV 100
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 3e-07
Identities = 17/123 (13%), Positives = 31/123 (25%), Gaps = 28/123 (22%)
Query: 19 TTAQRTPTISYISQEQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIST 74
+ + + + I D+ KC V + W K
Sbjct: 3 SGSSGQLEVL----QDIADLTVKAAEQAVFKCEVS-DEKVTGKWYK-------------- 43
Query: 75 GSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134
+ R I + + L++ D++ D G Y +S L
Sbjct: 44 NGVEVRPSKRITISHV--GRFHKLVIDDVRPEDEGDYTFVP---DGYALSLSAKLNFLEI 98
Query: 135 PVI 137
V
Sbjct: 99 KVS 101
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 37.8 bits (88), Expect = 7e-04
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 20/94 (21%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
+C V W K + ++ +ISH + I+ + G
Sbjct: 28 FKCEVSD-EKVTGKWYKNG--VEVRPSKRITISH--------VGRFHKLVIDDVRPEDEG 76
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPS 335
Y + + E + PS
Sbjct: 77 DYTFVPDGYALSLSAKLNFLE------IKVSGPS 104
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 4e-11
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 17/121 (14%)
Query: 124 SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG--- 180
S+ ++ + + + V L C P + W ++ ++ +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALL 60
Query: 181 ----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV-ITVPKPRL 235
++ R L +P + ED G Y C ++ T V V PV I P
Sbjct: 61 LQKEDTVRR---LVLPAVQLEDSGEYLCEIDDESASFT-----VTVTEPPVRIIYSGPSS 112
Query: 236 G 236
G
Sbjct: 113 G 113
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-05
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 24/99 (24%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
V L C + + + V W K D +V E ++ + +
Sbjct: 28 LERVVLTCEL--CRPWAEVRWTK-DGEEVVE-------------SPALLLQKE--DTVRR 69
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
L++ +Q D+G Y C++ + SA + V PPV
Sbjct: 70 LVLPAVQLEDSGEYLCEI-----DDESASFTVTVTEPPV 103
|
| >2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 4e-11
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 39 GGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G ++ ++C + +W + +PL +S+ R D
Sbjct: 12 GSSILVQCHYRLQDVKAQKVWCRFLPEG-CQPL-VSSAVDRRAPAGRRTFLTDLGGGLLQ 69
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + +QE DAG Y C V +I V L + PP
Sbjct: 70 VEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI-LPP 106
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 4e-11
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI--------LKIPQI 194
V G V++ ++ W + + R L +
Sbjct: 16 EDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDV 74
Query: 195 TKEDRGTYYCVAENG 209
+EDRG Y + G
Sbjct: 75 VQEDRGRYQVITNGG 89
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS--STY 96
G VE+ V V+WMK + R+ F RY +
Sbjct: 23 GDRVEMAVEVSEE-GAQVMWMK--------------NGVELTREDSFKARYRFKKDGKRH 67
Query: 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133
L+ D+ + D G Y+ + AE+ ++ ++
Sbjct: 68 ILIFSDVVQEDRGRYQVIT---NGGQCEAELIVEEKQ 101
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 5e-11
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 14/93 (15%)
Query: 143 RSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQI 194
+++ V EG+ EC + + W + + G Y L + +
Sbjct: 16 KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI---LVVREA 72
Query: 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227
D G K + + V P
Sbjct: 73 APSDAGEVVFSVRGLTSKAS---LIVRERSGPS 102
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-06
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 22/101 (21%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G + +C + + +W G + SRF Y
Sbjct: 23 GESCSFECVLSHESASDPAMWTV--------------GGKTVGSSSRFQATRQ--GRKYI 66
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
L+V++ +DAG V ++++ L VR S
Sbjct: 67 LVVREAAPSDAGEVVFSV-----RGLTSKASLIVRERSGPS 102
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 1e-10
Identities = 44/303 (14%), Positives = 85/303 (28%), Gaps = 46/303 (15%)
Query: 39 GGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPL----PISTGSSLIIRDSRFAIRYDTAS 93
G + L C+V P+ W + E + + +S +
Sbjct: 18 GESAILHCTVTSLIPVGPIQWFR-GAGPARELIYNQKEGHFPRVTTVSEST-----KREN 71
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINN----KISAEVDLQVRRPPVISDNSTRSLVVSE 149
+++ + +I DAG Y C + K A +L VR P S + +
Sbjct: 72 MDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP 131
Query: 150 GQPVQLECFAGG--HPTPRISWRRENNAILPTG---------GSIYRG-SILKIPQITKE 197
V C + G + W + N L Y S K+ ++
Sbjct: 132 QHTVSFTCESHGFSPRDITLKWFK-NGNELSDFQTNVDPVGESVSYSIHSTAKVVLTRED 190
Query: 198 DRGTYYCVAEN--GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP 255
C + G R + T+ + + +++ C V + P
Sbjct: 191 VHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQ 250
Query: 256 AI--VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV---ITIEKRQY---GSYICRA 307
+ W++ N +T E D T + + + C+
Sbjct: 251 RLQLTWLE--------NGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQV 302
Query: 308 ANK 310
+
Sbjct: 303 EHD 305
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 2e-08
Identities = 41/250 (16%), Positives = 75/250 (30%), Gaps = 37/250 (14%)
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILP------ 178
E +LQV +P +S+ V+ G+ L C P I W R
Sbjct: 1 EEELQVIQPD-------KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQK 53
Query: 179 ----TGGSIYRGSI--------LKIPQITKEDRGTYYCVAENG------VGKGTRRNIAV 220
+ S + I IT D GTYYCV G ++V
Sbjct: 54 EGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSV 113
Query: 221 EVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSISHF 279
+ + + P Q+ + C + P + ++ ++ +
Sbjct: 114 RAKPSAPVVSG-PAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVG- 171
Query: 280 ATADEFTDT-TIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELL 338
+ ++ T +V+ + + IC A+ + + P T
Sbjct: 172 -ESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ 230
Query: 339 PLRNVNMAVI 348
P+R N +
Sbjct: 231 PVRAENQVNV 240
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-10
Identities = 29/177 (16%), Positives = 46/177 (25%), Gaps = 15/177 (8%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
R V G + L C R G R ++ I E
Sbjct: 8 QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGL--RWLARQLVDIR-EPET 64
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQYDMDLECHVEAYPPPA-- 256
C + + + P V +P P + + L C V P A
Sbjct: 65 QPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGE-NFTLSCRVPGAGPRASL 122
Query: 257 -IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
+ ++ Q L S + T V+ + ++ CRA L
Sbjct: 123 TLTLLRGA--QELIRR---SFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 7e-07
Identities = 22/183 (12%), Positives = 44/183 (24%), Gaps = 33/183 (18%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
GG++ L CS + R T+
Sbjct: 16 RGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWL----------------------A 53
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
+ DI+E C + A ++ + P + G+ L C
Sbjct: 54 RQLVDIRE-PETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSC 111
Query: 158 FA-GGHPTPR--ISWRRENNAILP------TGGSIYRGSILKIPQITKEDRGTYYCVAEN 208
G P ++ R ++ + + ++ + C AE
Sbjct: 112 RVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171
Query: 209 GVG 211
+
Sbjct: 172 DLR 174
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 1e-10
Identities = 41/314 (13%), Positives = 81/314 (25%), Gaps = 39/314 (12%)
Query: 31 SQEQIKDIGGTVELKCSVQ--YAQDYPVIWMK---VDRNKVTEPLPISTGSSLIIRDSRF 85
S + T++L C V + W++ V ++ G
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGE--------- 66
Query: 86 AIRYDTASSTYTLLVKDIQETDAGYYRCQVI--IGINNKISAEVDLQVRRPPVISDNSTR 143
AS+ L + Y CQV + + R +
Sbjct: 67 -----LASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPS 121
Query: 144 SLVVSEGQPVQLECFAGG----HPTPRISWRRENNAILPTG--------GSIYRG-SILK 190
+ + + C T +++W R + + S L
Sbjct: 122 PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP 181
Query: 191 IPQITKEDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
+ + TY C + AP + + L C
Sbjct: 182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLAC 241
Query: 248 HVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK-RQYGSYIC 305
++ P V + Q+ + F + +T + Q +IC
Sbjct: 242 LIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFIC 301
Query: 306 RAANKLGTSEKTVE 319
RA ++ + +TV+
Sbjct: 302 RAVHEAASPSQTVQ 315
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-10
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
V+ G+ V+L C TP + W ++ AI + G++ L I +
Sbjct: 16 EDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM---LVIRGAS 71
Query: 196 KEDRGTYYCVAENGVGKGT 214
+D G Y C E +
Sbjct: 72 LKDAGEYTCEVEASKSTAS 90
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-06
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G VEL+C + PV W+K I + ++ + + + L
Sbjct: 23 GEDVELRCELS-RAGTPVHWLK--------------DRKAIRKSQKYDVVCE--GTMAML 65
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAE--VDLQVRRPP 135
+++ DAG Y C+V +K +A V+ + P
Sbjct: 66 VIRGASLKDAGEYTCEV---EASKSTASLHVEEKASGPS 101
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-05
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 19/91 (20%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
L C + P + W+K+ + + +Q Y + + T+ ++ I G
Sbjct: 28 LRCELSRAGTP-VHWLKDR--KAIRKSQKYDVVC--------EGTMAMLVIRGASLKDAG 76
Query: 302 SYICRAANKLGTSEKTVELFESIIPVCPPQT 332
Y C T+ VE P +
Sbjct: 77 EYTCEVEASKSTASLHVEE-----KASGPSS 102
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 1e-10
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 15/102 (14%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAI------------LPTG 180
P I+ + G V C A +W +N A+ G
Sbjct: 11 PQITVQPE-TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ +IL++ + G Y CV N G + +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-05
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P I+ + Q G V CS + D P+ + N+ + + + L +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG- 69
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ T L +++++ T G Y+C + + S L +
Sbjct: 70 -----ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 2e-10
Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 22/114 (19%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAG---GHPTPRISWRRENNAILPT----------- 179
P + + C G P P + W + + T
Sbjct: 3 MPASVQ-------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 55
Query: 180 GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
R L++ Q T + G Y +A N G+ +I P P+
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEFNPED 108
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 8e-10
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 8/121 (6%)
Query: 224 FAPVITVPKPRLGQALQY-DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATA 282
P +L A++ + V+ P P++ W+ + T+ A
Sbjct: 2 HMPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57
Query: 283 DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRN 342
+ +R+ G+Y AAN G + ++ P + P + +P N
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA---AFMDNPFEFNPEDPIPDTN 114
Query: 343 V 343
Sbjct: 115 S 115
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-10
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 121 NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180
+ S +V + + P + + G L C ++W ++ + +
Sbjct: 3 SGSSGKV-VFAKEQPAHRE-----VQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSS 55
Query: 181 G----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
++ L + Q + + G Y C A
Sbjct: 56 KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 22/95 (23%)
Query: 39 GGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G + L C V AQ V W K D K++ S+ + T
Sbjct: 26 GASATLSCEV--AQAQTEVTWYK-DGKKLSS-------------SSKVRVEAV--GCTRR 67
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132
L+V+ + +AG Y C+ G ++S + + +
Sbjct: 68 LVVQQAGQAEAGEYSCEA--G-GQQLSFRLQVAGQ 99
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-10
Identities = 43/312 (13%), Positives = 78/312 (25%), Gaps = 52/312 (16%)
Query: 16 INLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG 75
+ Q P +S + GG V L+C ++ + + K DR +
Sbjct: 16 GSHMGGQDKPFLS-AWPSAVVPRGGHVTLRCHYRHRFNN-FMLYKEDRIHIPI------- 66
Query: 76 SSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN----KISAEVDLQV 131
+ + + + AG Y C+ + S V + V
Sbjct: 67 -------------FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMV 113
Query: 132 ---RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP-----TGGSI 183
R P + + +V G+ V L+C +E + P
Sbjct: 114 TGNHRKPSLLAH--PGPLVKSGERVILQC-WSDIMFEHFFLHKEGISKDPSRLVGQIHDG 170
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRR------NIAVEVEFAPVITVPKPRLGQ 237
+ I + GTY C +I V + +P
Sbjct: 171 VSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKV 230
Query: 238 ALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297
+ L C +E ++ AD +
Sbjct: 231 QAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQAD------FPLGPAT- 282
Query: 298 RQYGSYICRAAN 309
G+Y C +
Sbjct: 283 -HGGTYRCFGSF 293
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 5e-07
Identities = 31/205 (15%), Positives = 54/205 (26%), Gaps = 27/205 (13%)
Query: 124 SAEVDLQV---RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180
+ + P +S S VV G V L C H +E+ +P
Sbjct: 11 DDDDKGSHMGGQDKPFLSAWP--SAVVPRGGHVTLRC-HYRHRFNNFMLYKEDRIHIPIF 67
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRL----- 235
+ +T G Y C + + V KP L
Sbjct: 68 HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127
Query: 236 -----GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTI 290
G+ + L+C + KE + + + A F +I
Sbjct: 128 PLVKSGERVI----LQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKA-NF---SI 178
Query: 291 RVITIEKRQYGSYICRAANKLGTSE 315
+ + G+Y C + +
Sbjct: 179 GPMMLALA--GTYRCYGSVTHTPYQ 201
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-10
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 19/93 (20%)
Query: 124 SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG--- 180
S L++ P V+ G+ + L+C + + W + + +
Sbjct: 3 SGSSGLKILTPL-------TDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLK 53
Query: 181 ----GSIYRGSILKIPQITKEDRGTYYCVAENG 209
G I++ L I ED G Y +
Sbjct: 54 VVQKGRIHK---LVIANALTEDEGDYVFAPDAY 83
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 5e-07
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 21/97 (21%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + LKC + +++ P W K + V E R + + L
Sbjct: 22 GKEICLKCEI--SENIPGKWTK-NGLPVQE-------------SDRLKVVQKG--RIHKL 63
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
++ + D G Y ++ + V P
Sbjct: 64 VIANALTEDEGDYVFAPDAY---NVTLPAKVHVISGP 97
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 2e-10
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 17/103 (16%)
Query: 143 RSLVVSEGQPVQLECFAGGHP---TPRISWRRENNAILPTGGSIY-------------RG 186
+ V G+ + P I W + L + +
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229
++I + G Y C + +EV + T
Sbjct: 75 FEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTT 116
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 4e-07
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
Q +G + V+ + W K L G L ++++
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMD----LASKAGKHLQLKET---FE 67
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK---ISAEVDLQVRRPPVISDN 140
+ T+ + + ++ AG YRC+V K S DL+V + N
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVT----YKDKFDSCSFDLEVHESTGTTPN 118
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-05
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 245 LECHVEAYP---PPAIVWIKEDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIEKRQY 300
V+A P I W K + + +H + T + + + I K +
Sbjct: 27 FIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE--TFERHSRVYTFEMQIIKAKD 84
Query: 301 ---GSYICRAANKLGTSEKTVEL 320
G+Y C K + +L
Sbjct: 85 NFAGNYRCEVTYKDKFDSCSFDL 107
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-10
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 11/82 (13%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRG 186
+ + V +G V+ P + W + I P+ G
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI- 64
Query: 187 SILKIPQITKEDRGTYYCVAEN 208
L I D YY A +
Sbjct: 65 --LFINNCQMTDDSEYYVTAGD 84
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-06
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 22/97 (22%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
GG V + V W K + ++ +++ + L
Sbjct: 23 GGRVRFVVELADP-KLEVKWYK-NGQEIRP-------------STKYIFEHK--GCQRIL 65
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + Q TD Y G + K S E L VR P
Sbjct: 66 FINNCQMTDDSEYYVTA--G-DEKCSTE--LFVRSGP 97
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
+ A P + W K Q + + Y H R++ I Q
Sbjct: 28 FVVEL-ADPKLEVKWYKNG--QEIRPSTKYIFEH--------KGCQRILFINNCQMTDDS 76
Query: 302 SYICRAANKLGTSEKTVE 319
Y A ++ ++E V
Sbjct: 77 EYYVTAGDEKCSTELFVR 94
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-10
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
+L V E C HP ++WR+ + +G G R L I +
Sbjct: 16 TNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLR---LTISALE 71
Query: 196 KEDRGTYYCVAENGVGKGT 214
K D TY C +
Sbjct: 72 KADSDTYTCDIGQAQSRAQ 90
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 26/108 (24%)
Query: 33 EQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
E++ ++ GT C ++ V W K G + +
Sbjct: 13 EELTNLQVEEKGTAVFTCKTEHP-AATVTWRK--------------GLLELRASGKHQPS 57
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
+ T L + +++ D+ Y C + + + L V+
Sbjct: 58 QE--GLTLRLTISALEKADSDTYTCDI-----GQAQSRAQLLVQGRRS 98
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 3e-10
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 25/182 (13%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G +VEL C + D + W K + LP L+++D F+ D S Y
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQ-----ELPQKHDKHLVLQD--FSEVED--SGYYVC 62
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSL--------VVSEG 150
+ Y + +V + K A ++ D S +
Sbjct: 63 YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122
Query: 151 QPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGV 210
V L C G I W ++ + I P + + K+ RGTY C
Sbjct: 123 GSVLLTC---GLTDKTIKWLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKET 176
Query: 211 GK 212
Sbjct: 177 SN 178
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 3e-04
Identities = 29/187 (15%), Positives = 47/187 (25%), Gaps = 43/187 (22%)
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITK-EDRGTYYCVAEN 208
G V+L C + W + N LP + L + ++ ED G Y C
Sbjct: 14 GTSVELTCPL--DSDENLKWEK-NGQELPQKHDKH----LVLQDFSEVEDSGYYVCYTPA 66
Query: 209 G-----------VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY----- 252
VG + K Q + ++
Sbjct: 67 SNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVL 126
Query: 253 -----PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
I W+K+ + N T T + K G+Y C+
Sbjct: 127 LTCGLTDKTIKWLKDGSIISPLNA--------------TKNTWNLGNNAKDPRGTYQCQG 172
Query: 308 ANKLGTS 314
A +
Sbjct: 173 AKETSNP 179
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-10
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSI 183
++P RS+ V+ G P E ++ W+R + I + G+
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTR 62
Query: 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGT 214
+ L + ++ D+G+Y +A + K
Sbjct: 63 HT---LTVREVGPADQGSYAVIAGSSKVKFD 90
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-05
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + + A V W + G S I +++ + + + +TL
Sbjct: 23 GSPAVFEAETERA-GVKVRWQR--------------GGSDISASNKYGLATE--GTRHTL 65
Query: 99 LVKDIQETDAGYYRCQV 115
V+++ D G Y
Sbjct: 66 TVREVGPADQGSYAVIA 82
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 4e-10
Identities = 10/79 (12%), Positives = 18/79 (22%), Gaps = 11/79 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
+ V G+ E P W+ + + + G + L +
Sbjct: 13 YGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHI---LILHNCQ 68
Query: 196 KEDRGTYYCVAENGVGKGT 214
G A N
Sbjct: 69 LGMTGEVSFQAANTKSAAN 87
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 8e-05
Identities = 11/99 (11%), Positives = 22/99 (22%), Gaps = 25/99 (25%)
Query: 21 AQRTPTISYISQEQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGS 76
A + + + + G T + + D W
Sbjct: 2 AMALIEVE----KPLYGVEVFVGETAHFEIELSEP-DVHGQWKL--------------KG 42
Query: 77 SLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115
+ I D + L++ + Q G Q
Sbjct: 43 QPLAASPDCEIIED--GKKHILILHNCQLGMTGEVSFQA 79
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 37.3 bits (87), Expect = 8e-04
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 14/78 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
E + + P W + Q L + I D ++ + Q G
Sbjct: 25 FEIEL-SEPDVHGQWKLKG--QPLAASPDCEIIE--------DGKKHILILHNCQLGMTG 73
Query: 302 SYICRAANKLGTSEKTVE 319
+AAN + V+
Sbjct: 74 EVSFQAANTKSAANLKVK 91
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-10
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 120 NNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179
+ L VR P+ R+ +EG L C + W + + +
Sbjct: 4 GSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDG 61
Query: 180 G-------GSIYRGSILKIPQITKEDRGTYYCVAEN 208
G+ L+I + ED G Y C+
Sbjct: 62 DRHSLRQDGARCE---LQIRGLVAEDAGEYLCMCGK 94
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 23/97 (23%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T L+C + + PV W K G + R ++R D + L
Sbjct: 34 GATAVLRCELS--KMAPVEWWK--------------GHETLRDGDRHSLRQD--GARCEL 75
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
++ + DAG Y C K L VR P
Sbjct: 76 QIRGLVAEDAGEYLCMC-----GKERTSAMLTVRAMP 107
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 4e-10
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 25/164 (15%)
Query: 55 PVIWMKVDRNKVTEPLP-ISTGSSLIIR--DSRFAIRY-------DTASSTYTLLVKDIQ 104
P + P + + +R Y L + ++
Sbjct: 9 PSLQ--------ALPSSLVPLEKPVTLRCQGPPGVDLYRLEKLSSSRYQDQAVLFIPAMK 60
Query: 105 ETDAGYYRCQVIIGINN-KISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAG 160
+ AG YRC G S +++L P +S + VS G V L+C
Sbjct: 61 RSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLS--AQPGPAVSSGGDVTLQC-QT 117
Query: 161 GHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYC 204
+ + + +E + + + I +T GTY C
Sbjct: 118 RYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC 161
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 1e-04
Identities = 32/180 (17%), Positives = 55/180 (30%), Gaps = 24/180 (13%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
P + S +V +PV L C G + +++ L IP
Sbjct: 8 KPSLQALP--SSLVPLEKPVTLRC-QGPPGVDLYRLEKLSSSRYQDQAV------LFIPA 58
Query: 194 ITKEDRGTYYCVAENGVGKGTRRN---IAVEVEFAPVITVPKPRLGQALQYDMDLECHVE 250
+ + G Y C +NG + + FA +P + D+ L+C
Sbjct: 59 MKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTR 118
Query: 251 AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310
Y KE N + + + F I +T G+Y C + +
Sbjct: 119 -YGFDQFALYKEGDPAPYKNPERWYRASF---------PIITVTAAHS--GTYRCYSFSS 166
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 4e-10
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
+ L V EG L C P + W NN + P G++ L + +
Sbjct: 16 KDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE---LVVRNLR 71
Query: 196 KEDRGTYYCVAENGVGKGT 214
+D G Y C + T
Sbjct: 72 PQDSGRYSCSFGDQTTSAT 90
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-06
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 26/107 (24%)
Query: 33 EQIKDI----GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR 88
E +KD+ GG L+C + + PV W + ++ ++++R
Sbjct: 13 EALKDLEVLEGGAATLRCVLS-SVAAPVKWCYGNN--------------VLRPGDKYSLR 57
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + L+V++++ D+G Y C + L V P
Sbjct: 58 QE--GAMLELVVRNLRPQDSGRYSCSF-----GDQTTSATLTVTALP 97
|
| >2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 5e-10
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
GG++ ++C Y + W + + + + + + T S R+ R +IR A+ +
Sbjct: 11 GGSLSVQC--PYEKEHRTLNKYWCRPPQIFLCDKI-VETKGSAGKRNGRVSIRDSPANLS 67
Query: 96 YTLLVKDIQETDAGYYRCQVIIG 118
+T+ ++++ E DAG Y C V
Sbjct: 68 FTVTLENLTEEDAGTYWCGVDTP 90
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 7e-10
Identities = 12/86 (13%), Positives = 19/86 (22%), Gaps = 16/86 (18%)
Query: 143 RSLVVSEGQPVQLECFAGGHP---TPRISWRRENNAILPTG-------------GSIYRG 186
+ V+ G + G P + W + L + S
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL 71
Query: 187 SILKIPQITKEDRGTYYCVAENGVGK 212
L I G+Y C
Sbjct: 72 FELHITDAQPAFTGSYRCEVSTKDKF 97
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-07
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 17/114 (14%)
Query: 25 PTISYIS--QEQIKDIGGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLI 79
P ++ Q+ +GG++ V A V W K L G L
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWV----DLSSKVGQHLQ 58
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN--KISAEVDLQV 131
+ DS + + L + D Q G YRC+V + +L V
Sbjct: 59 LHDS---YDRASKVYLFELHITDAQPAFTGSYRCEV---STKDKFDCSNFNLTV 106
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-05
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 242 DMDLECHVEAYP---PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298
+ V PP + W K L++ + + D + + + I
Sbjct: 21 SITFSARVAGASLLKPPVVKWFK-GKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA 79
Query: 299 Q---YGSYICRAANKLGTSEKTVEL 320
Q GSY C + K L
Sbjct: 80 QPAFTGSYRCEVSTKDKFDCSNFNL 104
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 8e-10
Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 28 SYISQEQIKDIGGTVELKCSVQYAQD---YPVIWMK--VDRNKVTEPLPISTGSSLIIRD 82
Y + G L CS P+ W K ++ T L + ++ +
Sbjct: 3 GYKVEV-----GKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQK 57
Query: 83 S-RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVII-GINNKISAEVDLQVR 132
S R+ ++ D +L++K++ D G Y C++ G+ N E+ L ++
Sbjct: 58 SSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109 | Back alignment and structure |
|---|
Score = 38.0 bits (88), Expect = 7e-04
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 27/107 (25%)
Query: 144 SLVVSEGQPVQLEC-FAGGHPT--PRISWRRE-------NNAILPTG------------- 180
V G+ L C + + W + N +L T
Sbjct: 3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQ 62
Query: 181 --GSIYRGSI-LKIPQITKEDRGTYYCVAEN-GVGKGTRRNIAVEVE 223
G + +G + L I +T +D GTY C + G+ + + ++++
Sbjct: 63 LKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 9e-10
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 39 GGTVELKCSVQYAQD-YPVIWMK--VDRNKVTEPLPISTGSSLIIRDS-RFAIRYDTASS 94
G V L C+ + W + + L + G + + S R+ ++ +
Sbjct: 12 GHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEG 71
Query: 95 TYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQVRRPPV 136
+L +++ E+D+G Y C+V I G N LQV+ V
Sbjct: 72 DVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
|
| >2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 5e-04
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 141 STRSLVVSEGQPVQLEC-FAGGHPTPRISWRRE-------NNAILPTGGS---------- 182
S + G PV L C ++ W R N ++ T G
Sbjct: 3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62
Query: 183 -----IYRGSI-LKIPQITKEDRGTYYCVAEN-GVGKGTRRNIAVEVEFAPV 227
I G + L I + D G Y C E G + +++V+ V
Sbjct: 63 NLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 1e-09
Identities = 36/253 (14%), Positives = 72/253 (28%), Gaps = 28/253 (11%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIY-RG 186
L RR P + + L G V L C + W A G
Sbjct: 1 LAPRRCPAQ-EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246
L + + D G Y C + V E + K ++
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKS-------PLSNVV 112
Query: 247 CHVEAY-----PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
C A++ +++ + Q + + +F+ + V + Y
Sbjct: 113 CEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQE-PCQYSQESQKFS-CQLAVPEGDSSFYI 170
Query: 302 SYICRAANKLGTSEKTVELFE--SIIPVCPPQTQPSELLPLRNVNMAVIFAEQPTSWEPQ 359
+C A+ +G+ + F+ I+ PP + ++V +W+
Sbjct: 171 VSMC-VASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSV-------TWQDP 222
Query: 360 RK-QLNCSSLLYQ 371
+ L ++
Sbjct: 223 HSWNSSFYRLRFE 235
|
| >1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-05
Identities = 27/166 (16%), Positives = 43/166 (25%), Gaps = 38/166 (22%)
Query: 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
+R P G +V L C +D + + +
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH---------- 51
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD 139
A LL++ +Q D+G Y C + + V L V PP
Sbjct: 52 --------PSRWAGMGRRLLLRSVQLHDSGNYSCYR----AGRPAGTVHLLVDVPP---- 95
Query: 140 NSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIY 184
+ QL CF + W + L T +
Sbjct: 96 -----------EEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLL 130
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 134 PPV--ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIY 184
PV +S SL + + V L C +W ++ + + G +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 185 RGSILKIPQITKEDRGTYYCVAEN 208
R L +P+ +D G + C E
Sbjct: 66 R---LILPEAKVQDSGEFECRTEG 86
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 9e-07
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 22/100 (22%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
V L C + D+P W K D KV E ++ D + L
Sbjct: 25 SERVVLTCELSRV-DFPATWYK-DGQKVEE-------------SELLVVKMD--GRKHRL 67
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS 138
++ + + D+G + C+ +SA + V+ P S
Sbjct: 68 ILPEAKVQDSGEFECRT-----EGVSAFFGVTVQDPSGPS 102
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 38.1 bits (89), Expect = 5e-04
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 14/78 (17%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY---G 301
L C + + W K+ Q + ++ + D + + + + G
Sbjct: 30 LTCEL-SRVDFPATWYKDG--QKVEESELLVVKM--------DGRKHRLILPEAKVQDSG 78
Query: 302 SYICRAANKLGTSEKTVE 319
+ CR TV+
Sbjct: 79 EFECRTEGVSAFFGVTVQ 96
|
| >2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 4e-09
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 39 GGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
G V LK Y I W+ K+ E + S+ I +S F R +
Sbjct: 18 GSNVTLKIHKDPLGPYRRITWLHTKNQKILE---YNYNSTKTIFESEFKGRVYLEENNGA 74
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134
L + ++++ D G Y +V+ N++ + L+V P
Sbjct: 75 LHISNVRKEDKGTYYMRVLRETENELK--ITLEVFDP 109
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 4e-09
Identities = 30/246 (12%), Positives = 73/246 (29%), Gaps = 44/246 (17%)
Query: 125 AEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTP----RISWRREN------ 173
A++ +++ + + V + C P I+W ++
Sbjct: 1 ADLKVEMMAGG--------TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKE 52
Query: 174 ----------------NAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217
AI+ + L++P I E+ G Y C K
Sbjct: 53 VKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGT- 111
Query: 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSI 276
+ +EV +P + ++G + + C YP + ++ TQ+ +
Sbjct: 112 VQLEVVASPASRLLLDQVGM-KENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISED 170
Query: 277 SHFATADEFTDTT------IRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP 330
+ D T +++ + ++ Y C + + +
Sbjct: 171 VITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLS 230
Query: 331 QTQPSE 336
+T+ ++
Sbjct: 231 ETEKTD 236
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 8e-08
Identities = 38/204 (18%), Positives = 62/204 (30%), Gaps = 30/204 (14%)
Query: 31 SQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPIS--TGSSLIIRDS 83
QI + V + C++ Y+Q + W E R
Sbjct: 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPG 69
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTR 143
+ S +L + IQ +AG YRC+V++ K V L+V P
Sbjct: 70 AIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVT-PLKAQGTVQLEVVASPASR--LLL 126
Query: 144 SLVVSEGQPVQLECFA-GGHPTP-RISWRRENNAILPTGGSIYRG--------------- 186
V + + C + G +P I+W + P I
Sbjct: 127 DQVGMKENEDKYMCESSGFYPEAINITWEK-QTQKFPHPIEISEDVITGPTIKNMDGTFN 185
Query: 187 --SILKIPQITKEDRGTYYCVAEN 208
S LK+ ++ Y CV +
Sbjct: 186 VTSCLKLNSSQEDPGTVYQCVVRH 209
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 6e-09
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-------GSIYRGSILKIPQIT 195
++ SEG L+C + W++ + G G+ L+I ++
Sbjct: 16 KTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE---LQIHDLS 70
Query: 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLG 236
D G Y C+ T + V A P G
Sbjct: 71 VADAGEYSCMCGQERTSAT---LTVRALPARFTEGSGPSSG 108
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 23/98 (23%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T L+C + ++ PV W K G + R++++ D + L
Sbjct: 23 GATATLQCEL--SKVAPVEWKK--------------GPETLRDGGRYSLKQD--GTRCEL 64
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136
+ D+ DAG Y C + L VR P
Sbjct: 65 QIHDLSVADAGEYSCMC-----GQERTSATLTVRALPA 97
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 7e-09
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKED 198
V EGQ C P ++W +++ + + + R L I ++ +D
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 549
Query: 199 RGTYYCVAENGVGK 212
+G Y A+N G
Sbjct: 550 KGEYTVRAKNSYGT 563
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
C V A PP + W K+D + L + Y + TI + + + G Y
Sbjct: 502 FYCRVIASSPPVVTWHKDDRE--LKQSVKYMKRY---NGNDYGLTINRVKGDDK--GEYT 554
Query: 305 CRAANKLGTSEKTVELF 321
RA N GT E+ V L
Sbjct: 555 VRAKNSYGTKEEIVFLN 571
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 16/78 (20%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + C V + V W K DR + + ++ RY+ + Y L
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRE--------------LKQSVKYMKRYN--GNDYGL 540
Query: 99 LVKDIQETDAGYYRCQVI 116
+ ++ D G Y +
Sbjct: 541 TINRVKGDDKGEYTVRAK 558
|
| >1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1 Length = 117 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 7e-09
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 39 GGTVELKCSVQYA-----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS 93
G +V + C Y + W + L S G R + +
Sbjct: 15 GNSVSITC--YYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPEN 72
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
T+ + + + + D+G Y+C + I + +S +V L+V
Sbjct: 73 GTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEV 109
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 8e-09
Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 26/186 (13%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P I + V + C +Y + ++ +
Sbjct: 5 PFIWAEPHFMVPK-EKQVTICCQG----NYGAVEYQLHFEGSLFAVDRPKPPER------ 53
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVR---RPPVISDN 140
+ + D+ AG Y C +G ++ S +DL V P +S
Sbjct: 54 --------INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLS-- 103
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
V G+ V C + +E + G + + +T RG
Sbjct: 104 VHPGPEVISGEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRG 162
Query: 201 TYYCVA 206
TY C
Sbjct: 163 TYRCFG 168
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-05
Identities = 28/183 (15%), Positives = 48/183 (26%), Gaps = 21/183 (11%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS---ILK 190
P I +V + + V + C G + E +
Sbjct: 4 KPFIWAEP--HFMVPKEKQVTICC-QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFY 60
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRN---IAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
IP + G Y C+ G N + V + P + C
Sbjct: 61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 120
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
++ + +KE + Q A EF + +T R G+Y C
Sbjct: 121 RLD-TATSMFLLLKEGRSSHV---QRGYGKVQA---EF---PLGPVTTAHR--GTYRCFG 168
Query: 308 ANK 310
+
Sbjct: 169 SYN 171
|
| >3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 8e-09
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 30 ISQEQIK-DIGGTVELKC--SVQYAQDYPVIWMK--VDRNKVTEPLPISTGSSLIIRDS- 83
+S++ I +G V L C + W K +K L + G+ +I R S
Sbjct: 1 MSEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKST 60
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQVRRPPV 136
++ + +L + + D+G Y C++ + G N + V L++RR V
Sbjct: 61 KYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALV 114
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 17/149 (11%)
Query: 90 DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE 149
+ Y ++ + I GY + + + +++ V+
Sbjct: 129 TFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP----------CTRTPHFLRIQNVEVNA 178
Query: 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-------GSILKIPQITKEDRGTY 202
GQ +C A G + + + + + TK D G Y
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 238
Query: 203 YCVAENGVGKGTRRNIAVEVEFAPVITVP 231
C+ G G + V+ PV P
Sbjct: 239 RCMIRTEGGVGISNYAELVVKEPPVPIAP 267
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-08
Identities = 24/188 (12%), Positives = 43/188 (22%), Gaps = 14/188 (7%)
Query: 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAE 207
S + + P W + + + L I + V
Sbjct: 89 SPPGLLNVYVKVNNGPLGNPIWNISGDP-----TRTWNRAELAISTFWPNFYQVIFEVIT 143
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQ----YDMDLECHVEAYPPPAIVWIKED 263
+G +G V+V P P Q ++ +C +
Sbjct: 144 SG-HQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG 202
Query: 264 TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323
+ + T+ + V+ KR G Y C + G
Sbjct: 203 IDVRDAPLKEIKV----TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Query: 324 IIPVCPPQ 331
P P
Sbjct: 259 KEPPVPIA 266
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 33/179 (18%), Positives = 49/179 (27%), Gaps = 32/179 (17%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G V L+C ++ R K T P L
Sbjct: 19 GSPVTLRCQG----GQETQEYRLYREKKTAPWITRIPQEL--------------VKKGQF 60
Query: 99 LVKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRR---PPVISDNSTRSLVVSEGQPV 153
+ I G YRC + S ++L V P +S S VV+ G V
Sbjct: 61 PIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSA--QPSPVVNSGGNV 118
Query: 154 QLECFAGGHPTPRISWRRENNAILPTGGSIYRGS------ILKIPQITKEDRGTYYCVA 206
L+C +E P + + I + ++ R Y C A
Sbjct: 119 TLQC-DSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA 176
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 24/188 (12%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS---ILK 190
P + V+++G PV L C GG T RE
Sbjct: 5 KPTLWAEP--GSVITQGSPVTLRC-QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFP 61
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE-----FAPVITV---PKPRLGQALQYD 242
IP IT E G Y C + + + +E+ P ++ P G +
Sbjct: 62 IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVT-- 119
Query: 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302
L+C + KE + + ++ F ++ ++ +R
Sbjct: 120 --LQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIF---SVGPVSPSRR--WW 171
Query: 303 YICRAANK 310
Y C A +
Sbjct: 172 YRCYAYDS 179
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-08
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 12/121 (9%)
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINN-KISAEVDLQVR---RPPVISDNSTRSLVVS 148
+ + + E AG YRC + + S ++L + P +S + S +V+
Sbjct: 55 KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLS--ALPSPLVT 112
Query: 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS-----ILKIPQITKEDRGTYY 203
G+ V L C P +E A G+ + +T GTY
Sbjct: 113 SGKSVTLLC-QSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYR 171
Query: 204 C 204
C
Sbjct: 172 C 172
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 7e-06
Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG---SIL 189
P + V+S G V + C G +E + + +
Sbjct: 4 PKPTLWAEP--GSVISWGNSVTIWC-QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARF 60
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRN---IAVEVEFAPVITVPKPRLGQALQYDMDLE 246
IP +T++ G Y C + VG + + + ++ P + L
Sbjct: 61 SIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLL 120
Query: 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306
C P + KE L + + A+ F + +T G+Y C
Sbjct: 121 CQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQAE-F---PMSPVTSVHG--GTYRCF 173
Query: 307 AANK 310
+++
Sbjct: 174 SSHG 177
|
| >2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 2e-08
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 39 GGTVELKC--SVQYAQDYPVIWMK--VDRNKVTEPLPISTGSSLIIR-DSRFAIRYDTAS 93
G V L C S P+ W + L + G ++ + +SR+ ++ + +
Sbjct: 12 GHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISE 71
Query: 94 STYTLLVKDIQETDAGYYRCQV-IIGINNKISAEVDLQVRRPP 135
+L +++ D G Y C V I G + + ++++ P
Sbjct: 72 GNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
|
| >2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 3e-04
Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 26/112 (23%)
Query: 141 STRSLVVSEGQPVQLECF--AGGHPTPRISWRRE-------NNAILPTGGS--------- 182
S ++ G PV L C + W +++ T G
Sbjct: 3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSR 62
Query: 183 ------IYRGSI-LKIPQITKEDRGTYYC-VAENGVGKGTRRNIAVEVEFAP 226
I G++ L I D G Y C V G + V+ E P
Sbjct: 63 YQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 3e-08
Identities = 34/239 (14%), Positives = 60/239 (25%), Gaps = 31/239 (12%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P I + V + C +Y + ++ +
Sbjct: 8 PFIWAEPHFMVPK-EKQVTICCQG----NYGAVEYQLHFEGSLFAVDRPKPPER------ 56
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDN 140
+ + D+ AG Y C +G ++ S +DL V P +S +
Sbjct: 57 --------INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH 108
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG 200
V G+ V C T +E + G + + +T RG
Sbjct: 109 --PGPEVISGEKVTFYC-RLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRG 165
Query: 201 TYYCVAENGVGKGTRR----NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP 255
TY C + + V + P+ A E
Sbjct: 166 TYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADT-WGTYLLTTETGLQK 223
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 3e-08
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 38 IGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
GG++ L+C + V W + D+ L I F R
Sbjct: 17 KGGSIILQCHLSSTTAQVTQVNWEQQDQL-----LAICNADLGWHISPSFKDRV-APGPG 70
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
L ++ + D G Y C + + + L+V V +
Sbjct: 71 LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116
|
| >1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus} Length = 113 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 3e-08
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 39 GGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G++ ++C +Y DY W + + + L + S +++ +R +IR +
Sbjct: 16 QGSLTVQC--RYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFI 73
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+T+ ++D++ +DAG Y C + G +V + +
Sbjct: 74 FTVTMEDLRMSDAGIYWCGITKG-GLDPMFKVTVNI 108
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 3e-08
Identities = 31/213 (14%), Positives = 54/213 (25%), Gaps = 45/213 (21%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
+ C ++ +D V + + I ++ I TASS
Sbjct: 17 LHSNFTAVCVLKEKC--------MDYFHVNANYIVWKTNHFTIPKEQYTIINRTASS--- 65
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLEC 157
+ DI + + G + + + PP +P L C
Sbjct: 66 VTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP--------------EKPKNLSC 111
Query: 158 FAGGHPTPRISWRRENNAILPTGGSI-YRGSILKIPQITKEDRG---------------- 200
R W L T ++ + K +
Sbjct: 112 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 171
Query: 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
+ AEN +GK T +I + P P
Sbjct: 172 EVWVEAENALGKVTSDHINFDPV---YKVKPNP 201
|
| >3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 7e-05
Identities = 27/202 (13%), Positives = 39/202 (19%), Gaps = 28/202 (13%)
Query: 143 RSLVVSEGQPVQLEC-------FAGGHPTPRISWRRENNAILPTGGSI--YRGSILKIPQ 193
S VV C I W+ + I +I S +
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTD 70
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYP 253
I C V P+ +L C V
Sbjct: 71 IAS-LNIQLTCNILTFGQLEQ----NVYGITIISGLPPEK--------PKNLSCIVNEGK 117
Query: 254 PPAIVWIK-EDTQQVLTNNQHYSISHFATADEFT-----DTTIRVITIEKRQYGSYICRA 307
W +T + AD + + A
Sbjct: 118 KMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 177
Query: 308 ANKLGTSEKTVELFESIIPVCP 329
N LG F+ + V P
Sbjct: 178 ENALGKVTSDHINFDPVYKVKP 199
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} Length = 256 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 9e-08
Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 53/228 (23%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPL-PISTGSSLIIRDSRFAIRYDTASSTYT 97
G +++L+C Y+ + W + + L +G ++ + F + + S++
Sbjct: 18 GASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFH 77
Query: 98 LLVKDIQETDAGYYRCQVIIGINN-------------KISAEVDLQVRRPPVISDNST-- 142
L + +D+ Y C V S
Sbjct: 78 LRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSE 137
Query: 143 -------RSLVVSEGQPVQLECFA-GGHPTPRISWRR------------------ENNAI 176
R+ V G+ V L C H + W R
Sbjct: 138 AAVTQSPRNKVTVTGENVTLSCRQTNSHNY--MYWYRQDTGHELRLIYYSYGAGNLQIGD 195
Query: 177 LPTGGSIYRGSI----LKIPQITKEDRGTYYCVAENGV-----GKGTR 215
+P G R + L + + Y+C + + G+G++
Sbjct: 196 VPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSK 243
|
| >2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 9e-08
Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY---DTA 92
G V+++C + Y V W+ + + + + I+ +++ R
Sbjct: 16 KGDVKIQCIYDPLRGYRQVLVKWLVR-HGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKV 74
Query: 93 SSTYTLLVKDIQETDAGYYRCQVIIGINN----KISAEVDLQVRR 133
+L + +Q D +Y C+V + ++L+VR+
Sbjct: 75 PGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRK 119
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 32/178 (17%), Positives = 54/178 (30%), Gaps = 31/178 (17%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G +V ++C ++ + EP +
Sbjct: 19 GNSVTIRCQG----TLEAQEYRLVKEGSPEPWDTQNPLE--------------PKNKARF 60
Query: 99 LVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQ 154
+ + E AG YRC ++ S ++L V P +S + S VV+ G+ V
Sbjct: 61 SIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLS--ALPSPVVTSGENVT 118
Query: 155 LECFAGGHPTPRISWRRENNAILP-TGGSIYRGS-----ILKIPQITKEDRGTYYCVA 206
L+C R E + L T S S + + +T R C
Sbjct: 119 LQC-GSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-05
Identities = 23/183 (12%), Positives = 46/183 (25%), Gaps = 15/183 (8%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS---ILK 190
+ V+S G V + C G +E + +
Sbjct: 5 KATLWAEP--GSVISRGNSVTIRC-QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFS 61
Query: 191 IPQITKEDRGTYYCVAENGVGKGTRRN---IAVEVEFAPVITVPKPRLGQALQYDMDLEC 247
IP +T+ G Y C + G + + V + P ++ L+C
Sbjct: 62 IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQC 121
Query: 248 HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307
+ +E ++ F + +T R C
Sbjct: 122 GSR-LRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALF---PVGPVTPSHR--WMLRCYG 175
Query: 308 ANK 310
+ +
Sbjct: 176 SRR 178
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-07
Identities = 27/131 (20%), Positives = 41/131 (31%), Gaps = 13/131 (9%)
Query: 84 RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI----SAEVDLQVR---RPPV 136
R + S + + + AG YRC + + S +D+ + P
Sbjct: 51 RLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPS 110
Query: 137 ISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI---LPTGGSIYRGSILKIPQ 193
+S + V G+ V L C + RE A LP G + P
Sbjct: 111 LS--AQPGPTVLAGENVTLSC-SSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPL 167
Query: 194 ITKEDRGTYYC 204
GTY C
Sbjct: 168 GPATHGGTYRC 178
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 13/129 (10%)
Query: 88 RYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKI----SAEVDLQVRR---PPVISDN 140
+ S + + + AG YRC + + S +D+ + P +S
Sbjct: 54 EHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLS-- 111
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI---LPTGGSIYRGSILKIPQITKE 197
+ V G+ V L C + RE A G + P
Sbjct: 112 AQPGPTVLAGESVTLSC-SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT 170
Query: 198 DRGTYYCVA 206
GTY C
Sbjct: 171 HGGTYRCFG 179
|
| >1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A* Length = 119 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-07
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 39 GGTVELKCSVQYAQDYP------VIWMKVDRNKVTEPLPISTGSSLIIRDS---RFAIRY 89
G + + C Y D P IW K + I +G ++ R +
Sbjct: 15 GSCLLIPCIFSYPADVPVSNGITAIWYYDYSGK--RQVVIHSGDPKLVDKRFRGRAELMG 72
Query: 90 DTASSTYTLLVKDIQETDAGYYRCQVIIGINNK 122
+ LL+KD++ D+G Y + I +N+
Sbjct: 73 NMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNR 105
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 2e-07
Identities = 26/174 (14%), Positives = 48/174 (27%), Gaps = 14/174 (8%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
+ L V +++ C + N IL +
Sbjct: 10 KKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQA----QWKHYLVSNISHDTVL 65
Query: 203 YCVAEN-GVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA---IV 258
C G + N++V VI +P L A+ +EC V P +
Sbjct: 66 QCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTL-VAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312
+ + + L + A A + T + + ++ C A L
Sbjct: 125 LFRGN--ETLHYE---TFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM 173
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 4e-05
Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 34/189 (17%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDT 91
++ + G++E+ CS Q V ++ NK+ + +
Sbjct: 10 KKLAVEPKGSLEVNCSTTCNQP-EVGGLETSLNKI----LLDEQAQWKHY---------- 54
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ 151
LV +I + +C + S ++ V +PP + + +V+ G+
Sbjct: 55 -------LVSNI--SHDTVLQCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGK 104
Query: 152 PVQLECFA-GGHPTPR--ISWRRENNAILPTGGSIYRG------SILKIPQITKEDRGTY 202
+EC P + R N + + ++ +
Sbjct: 105 SFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNF 164
Query: 203 YCVAENGVG 211
C+A +
Sbjct: 165 SCLAVLDLM 173
|
| >1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-07
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 13/105 (12%)
Query: 38 IGGTVELKCSVQYAQDYP-----VIWMKVDRNKVTEPLPISTG-SSLIIRDSRFAIRYDT 91
T +L C +Q+ V W + + + G S++ R
Sbjct: 8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVL---NEVYLGKEKFDSVHSKYMGRTSF 64
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVI----IGINNKISAEVDLQVR 132
S ++TL + ++Q D G Y+C + G+ +L V
Sbjct: 65 DSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-07
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 12/116 (10%)
Query: 38 IGGTVELKCSV---QYAQDYPVIWMKVDRNKVT------EPLPISTGSSLIIRDSRFAIR 88
+G EL C + + A V W + ++V + R +
Sbjct: 20 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL--K 77
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRS 144
L +++++ +D G Y C + A V+L+V P +
Sbjct: 78 ESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYWINPGRSR 132
|
| >1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1 Length = 127 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-07
Identities = 13/98 (13%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 39 GGTVELKC--SVQYAQDYPVIWMKVDRNKVTEPL---PISTGSSLIIRDSRFAIRYDTAS 93
G T+++KC +++ W + ++ + L + +S ++ R +
Sbjct: 19 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDH 78
Query: 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ + ++Q D+G Y+C + +++
Sbjct: 79 GLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRL 116
|
| >1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1 Length = 119 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-07
Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 24/135 (17%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKC--SVQYAQDYPVIWMKVDRNKVTEPLPISTGSSL 78
A + Y +E G T+++KC +++ W + ++ + L + S
Sbjct: 1 ATKLTEEKYELKE-----GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSK 55
Query: 79 IIRDS---RFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
R + + + ++Q D+G Y+C + ++
Sbjct: 56 NSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIR----- 110
Query: 136 VISDNSTRSLVVSEG 150
LVV++G
Sbjct: 111 ---------LVVTKG 116
|
| >2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens} Length = 111 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-06
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 38 IGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96
+G +V ++Q + + W P T + + + R Y
Sbjct: 13 LGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNY 72
Query: 97 TLLVKDIQETDAGYYRCQVII-GINNKISAEVDLQV 131
L++ D++ DAG Y+ + + +LQ+
Sbjct: 73 NLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 40/242 (16%), Positives = 72/242 (29%), Gaps = 66/242 (27%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPL-PISTGSSLIIRDS----RFAIRYDTAS 93
G + E+ C + + W K + L + +S ++ +S Y +
Sbjct: 17 GSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTR 76
Query: 94 STYTLLVKDIQETDAGYYRCQ------------------VIIGINNKISAEVDLQVRRPP 135
++++++ E D+G Y C V + A+ D +
Sbjct: 77 KNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGA 136
Query: 136 VISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGS----IYRGSI-- 188
+ S+ + + V L C + + I W + I +GS
Sbjct: 137 QKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKR-----LPSKEMIFLIRQGSDEQ 191
Query: 189 -------------------LKIPQITKEDRGTYYCVAENGV--------GKGTRRNIAVE 221
L I + ED Y+C + GKGTR V
Sbjct: 192 NAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTR----VT 247
Query: 222 VE 223
VE
Sbjct: 248 VE 249
|
| >3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-06
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 39 GGTVELKCSVQ-----YAQDYPVIWMKVDRNKVTEPLPISTGSSLII--RDSRFAIRYDT 91
G +V L C +Q + W + + + G S R A R
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+L + ++ D G Y C + S ++ L+V P
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 8e-06
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 15/101 (14%)
Query: 39 GGTVELKCSVQYAQDYP---VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
G + V + + W K + L +G+ ++S +++AS+
Sbjct: 27 GKDAVVVAKVNGKELPDKPTIKWFKGKWLE----LGSKSGARFSFKES-----HNSASNV 77
Query: 96 YT--LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134
YT L + + D GYYR +V + S ++ V P
Sbjct: 78 YTVELHIGKVVLGDRGYYRLEV-KAKDTCDSCGFNIDVEAP 117
|
| >3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 9e-06
Identities = 25/114 (21%), Positives = 34/114 (29%), Gaps = 35/114 (30%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLEC----FAGGHPTPRISWRRENNA---ILPTGG 181
L V +PP + EG L C G ++W R+ + G
Sbjct: 9 LWVSQPP--------EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGT 60
Query: 182 SIYRGSI---------------LKIPQITKEDRGTYYCVAEN-----GVGKGTR 215
+RG + L I + D Y C E G G GTR
Sbjct: 61 PEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGNGTR 114
|
| >3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 39 GGTVELKCSVQYAQ-DYPVIWMKVDRNKVTE-PLPISTGSSLIIRDSRFAIRYDTASSTY 96
G + L CS +Q + + R++V + R + A
Sbjct: 22 GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQA 81
Query: 97 TLLVKDIQETDAGYYRCQVIIG 118
L ++D++ DA Y C+V +
Sbjct: 82 ELHIRDVRGHDASIYVCRVEVL 103
|
| >3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus} Length = 166 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-05
Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 14/143 (9%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEP----LPISTGSSLIIRDSRFAIRYDTAS 93
+G V+L C V + W+ + + + +++ + I D + ++
Sbjct: 23 LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA 82
Query: 94 -----STYTLLVKDIQETDAGYYRCQV----IIGINNKISAEVDLQVRRPPVISDNSTRS 144
+ Y L + + + GYY C V ++ ++ + + + +
Sbjct: 83 MRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPV 142
Query: 145 LVVSEGQPVQLE-CFAGGHPTPR 166
QP + E C G
Sbjct: 143 HPTGTSQPQRPEDCRPRGSVKGT 165
|
| >3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A Length = 117 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-05
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 39 GGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSL-IIRDSRFAIRYDTASSTY 96
G CS+ +++D + W ++ + TE + ++D+RF I +
Sbjct: 14 GANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDF 73
Query: 97 TLLVKDIQETDAGYYRCQVI 116
+ + D + D+G Y C I
Sbjct: 74 HMNILDTRRNDSGIYLCGAI 93
|
| >1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A* Length = 132 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-05
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 39 GGTVELKCSVQYAQDYP-------VIWMKVDRNKVTEPLPISTGSSLIIRDS---RFAIR 88
G V ++CS Y D W + + + + + +++ RF +
Sbjct: 21 GMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLL 80
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIG 118
D + TL ++D + +DAG Y ++ G
Sbjct: 81 GDPQTKNCTLSIRDARMSDAGRYFFRMEKG 110
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 3e-05
Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 24/177 (13%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITK-EDRGT 201
+++ G V + C + LP + G+ K+ +++ ++
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGIE----TPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 202 YYCVAENGVGKGTRRNIAVEVEFAP--VITVPKPRLGQALQYDMDLECHVEAYPPPA--- 256
C + + + V + P V P P Q + + L C VE P A
Sbjct: 63 PMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSW-QPVGKQLTLRCQVEGGAPRAQLT 120
Query: 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG-SYICRAANKLG 312
+V ++ + + L A + + + +G + CR L
Sbjct: 121 VVLLRGE--KELKR---------EPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 166
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 7e-05
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 90 DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSE 149
++ + ++QE C + + +A+ L V P + +
Sbjct: 44 LPGNNRKVYELSNVQED--SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPV 100
Query: 150 GQPVQLECFA-GGHPTPR--ISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYY-CV 205
G+ + L C GG P + + R + + + ++ G + C
Sbjct: 101 GKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCR 160
Query: 206 AENGVG 211
E +
Sbjct: 161 TELDLR 166
|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 4e-05
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 153 VQLECFAGGHPTPRISWRRENNAILPTGGSIYR--GSILKIPQITKEDRGTYYCVAENGV 210
+L+C R+ W+ +N + L I +++ D G Y C++E V
Sbjct: 551 AELKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERV 609
Query: 211 GKGTRRNIAVEVEFAPVITVPKPRL 235
T + + V VPKP +
Sbjct: 610 KNKTVFQVVAKHVLE-VKVVPKPVV 633
|
| >1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R Length = 128 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 8e-05
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP----ISTGSSLIIRDSRFAIRYDTAS 93
+G V+L C V + W+ + + +++ + I D + ++
Sbjct: 18 LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA 77
Query: 94 -----STYTLLVKDIQETDAGYYRCQVIIG 118
+ Y L + + + GYY C VI
Sbjct: 78 MRDTNNKYVLTLNKFSKENEGYYFCSVISN 107
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 8e-05
Identities = 51/332 (15%), Positives = 95/332 (28%), Gaps = 56/332 (16%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYT 97
G V + C+ + V W + + L + RF+ + ++ +
Sbjct: 15 GQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPT-RFSG--SKSGTSAS 71
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLV--------VSE 149
L + ++ D Y C N+ ++ V + V+ V +
Sbjct: 72 LAISGLEAEDESDYYCASW---NSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQ 128
Query: 150 GQPVQLECFAGGH-PTP-RISWRRENNAILPTG----------GSIYRG-SILKIPQITK 196
L C P ++W+ + + + G + Y S L +
Sbjct: 129 ANKATLVCLISDFYPGAVTVAWKA-DGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQW 187
Query: 197 EDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY- 252
+ +Y C + V K P + P L C V+ Y
Sbjct: 188 KSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF 247
Query: 253 PPPAIV-WIKEDTQQ-------VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS-- 302
P P V W VL ++ YS+S V+T+ G+
Sbjct: 248 PQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS-------------SVVTVPSSSLGTQT 294
Query: 303 YICRAANKLGTSEKTVELFESIIPVCPPQTQP 334
YIC +K ++ + +P
Sbjct: 295 YICNVNHKPSNTKVDKRVEPLSLPSVFLFPPK 326
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 36/239 (15%), Positives = 67/239 (28%), Gaps = 39/239 (16%)
Query: 111 YRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG----HPTPR 166
Y C V +N + + P V + + ++ C P +
Sbjct: 295 YICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVK 354
Query: 167 ISWRRENNAILPT--------GGSIYRG-SILKIPQITKEDRGTYYCVAENG---VGKGT 214
+W + + S YR S+L + D Y C N
Sbjct: 355 FNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEK 414
Query: 215 RRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIV--WIKED--------T 264
+ A P + P + + + L C V+ + P I W T
Sbjct: 415 TISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTT 474
Query: 265 QQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA---ANKLGTSEKTVEL 320
VL ++ + + + V +Q + C A ++K++ L
Sbjct: 475 PPVLDSDGSFFLYS----------KLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSL 523
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 20/163 (12%)
Query: 189 LKIPQITKEDRGTYYCVAENG------VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYD 242
L I + ED YYC + N G GT+ + + + P +T+ P +
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 131
Query: 243 MDLECHVEAY-PPPAIV-WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300
L C + + P V W + + + + +++ +++ Q+
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADG--SPVKAGVETTKPSKQSNNKYA--ASSYLSLTPEQW 187
Query: 301 GS---YICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPL 340
S Y C+ ++ T EKTV C T+ + PL
Sbjct: 188 KSHRSYSCQVTHEGSTVEKTVA-----PTECSASTKGPSVFPL 225
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-05
Identities = 29/214 (13%), Positives = 56/214 (26%), Gaps = 45/214 (21%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPR---ISWRRENNAILPT--------GG 181
PP D V++ ++ C SW ++ +
Sbjct: 8 PPKPKD------VLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFN 61
Query: 182 SIYRG-SILKIPQITKEDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVITVPKPRLGQ 237
S +R S L I + + C + + AP + P Q
Sbjct: 62 STFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQ 121
Query: 238 ALQYDMDLECHVEA-YPPPAIV-WIKED--------TQQVLTNNQHYSISHFATADEFTD 287
+ + L C + +P V W TQ ++ + Y +
Sbjct: 122 MAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYS--------- 172
Query: 288 TTIRVITIEKRQYGSYICRA---ANKLGTSEKTV 318
+ V ++ C +EK++
Sbjct: 173 -KLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSL 205
|
| >1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 9e-05
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 14/110 (12%)
Query: 39 GGTVELKCSVQ----YAQDYPVIWMKVDRNKVTEPLPI--STGSSLIIRDSRFAIRY--- 89
G V L CS + D W + G I F R
Sbjct: 14 GSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWV 73
Query: 90 -DTASSTYTLLVKDIQETDAGYYRCQVII--GINNKISAEVDLQVR-RPP 135
D + ++++ ++ +D G + C V I K +++V L V + P
Sbjct: 74 GDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGK-TSQVTLYVFEKVP 122
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 9e-05
Identities = 67/429 (15%), Positives = 120/429 (27%), Gaps = 128/429 (29%)
Query: 47 SVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST----------- 95
VQ D+ + W+ + E + L D + R D +S+
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 96 --------Y--TLL----VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS 141
Y LL V++ + +A C++++ K + + D+
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 142 TRSLVVSEGQPVQLECFA---------------GGHPTPRIS---------------WRR 171
+ +L E +P R+S W+
Sbjct: 295 SMTLTPDEV----KSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKH 349
Query: 172 EN------------NAILPTGGSIYRG-----SIL----KIPQITKE---DRGTYYCVAE 207
N N + P + YR S+ IP I V
Sbjct: 350 VNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV-M 405
Query: 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECH---VEAYPPPAIVWIKEDT 264
V K + ++ + I++P L ++ + + H V+ Y P + +D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDL 464
Query: 265 QQVLTNNQHYS-IS-HFATADE---------------FTDTTIRVITIEK---------- 297
+ YS I H + F + IR +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 298 ---RQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQPT 354
+ Y YIC K E+ V +P S+ L + +A + AE
Sbjct: 525 QQLKFYKPYICDNDPKY---ERLVNAILDFLPKIEENLICSKYTDL--LRIA-LMAEDEA 578
Query: 355 SWEPQRKQL 363
+E KQ+
Sbjct: 579 IFEEAHKQV 587
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 14/116 (12%)
Query: 29 YISQEQIK-DIGGTVELKCSVQY----AQDYPVIWMKVDRNKVTEPLPIST---GSSLII 80
+E I+ G T L C + W+ + I
Sbjct: 9 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 68
Query: 81 RDSRFAIR-----YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
R D S ++ V ++Q +D G Y+C+V + ++ L V
Sbjct: 69 YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKA-PGVANKKIHLVV 123
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 25/195 (12%)
Query: 147 VSEGQPVQLECFAGGHPTP---RISWRRENNAILPTG------GSIYRG-SILKIPQITK 196
+ G L C G +W + G Y S+L
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW 75
Query: 197 EDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV---PKPRLGQALQYDMDLECHVEAYP 253
T+ C A K + V P P AL + L C +
Sbjct: 76 NHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFS 135
Query: 254 PPAIV--WIKEDTQQVLTNNQHYSISHFATADEFTDT-----TIRVITIEKRQYGSYICR 306
P ++ W++ + L ++ + + + T T +RV + ++ ++ C
Sbjct: 136 PKDVLVRWLQGSQE--LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCM 193
Query: 307 A---ANKLGTSEKTV 318
A L ++KT+
Sbjct: 194 VGHEALPLAFTQKTI 208
|
| >3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 1e-04
Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 19/112 (16%)
Query: 39 GGTVELKCSVQ----YAQDYPVIWMKVDRNKVTEPLPI---------------STGSSLI 79
GGTVEL C + V W + D + + S S +
Sbjct: 17 GGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFV 76
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ TL + + D G Y C+ + L+V
Sbjct: 77 SAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 42/303 (13%), Positives = 84/303 (27%), Gaps = 60/303 (19%)
Query: 22 QRTPTISYISQEQIKDIGGTVELKCSVQ--YAQDYPVIWMKVDRNKVTEPLPISTGSSLI 79
P++ ++ V L C V+ + + V W + P S L
Sbjct: 117 TTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDL- 175
Query: 80 IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR------R 133
Y T SS+ T+ + C V + S +VD ++ +
Sbjct: 176 ---------Y-TLSSSVTVPS---SPRPSETVTCNVA---HPASSTKVDKKIVPRDCGCK 219
Query: 134 PPVISDNSTRSL---------VVSEGQPVQLECFAGG--HPTPRISW-RRENNAILPTGG 181
P + + S+ + ++ C P + + +N + T
Sbjct: 220 PCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQ 279
Query: 182 SIYRG----------SILKIPQITKEDRGTYYCVAENG---VGKGTRRNIAVEVEFAPVI 228
+ R S L I + + C + + AP +
Sbjct: 280 TQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQV 339
Query: 229 TVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKED--------TQQVLTNNQHYSISH 278
P Q + + L C + + P + W + TQ ++ + Y +
Sbjct: 340 YTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYS 399
Query: 279 FAT 281
Sbjct: 400 KLN 402
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 41/227 (18%), Positives = 69/227 (30%), Gaps = 40/227 (17%)
Query: 146 VVSEGQPVQLECFA-GGHPTP-RISWRREN--------NAILPTGGSIY-------RGSI 188
+ G V++ C A G T I W ++ I P+ + ++
Sbjct: 10 LARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATL 69
Query: 189 ----------LKIPQITKEDRGTYYCVAENGV---GKGTRRNIAVEVEFAPVITVPKPRL 235
+ + +T +D YYCV E V G+GT ++ P + P
Sbjct: 70 TRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGS 129
Query: 236 GQALQYDMDLECHVEAY-PPPAIV-WIK-EDTQQVLTNNQHYSISHFATADEFTDTTIRV 292
+ L C V+ Y P P V W + V T + + T
Sbjct: 130 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVT------ 183
Query: 293 ITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLP 339
+ R + C A+ +S K + C P +
Sbjct: 184 VPSSPRPSETVTCNVAHP-ASSTKVDKKIVPRDCGCKPCICTVPEVS 229
|
| >3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 3/140 (2%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G + CS + Y + W + + K E L + T + + R + +T L
Sbjct: 15 GDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYL 74
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF 158
+K Q D+ Y C G L V D + L S+ + C
Sbjct: 75 YIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKSSDKSV-CL 133
Query: 159 AGGHP--TPRISWRRENNAI 176
T + + I
Sbjct: 134 FTDFDSQTNVSQSKDSDAYI 153
|
| >3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 3e-04
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 3/116 (2%)
Query: 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH 162
+ + I+ + P + + ++ L C
Sbjct: 468 GWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES- 526
Query: 163 PTPRISWRRENNAILPTGGSIYRGS-ILKIPQITKEDRGTYYCVA-ENGVGKGTRR 216
SWR + N + IL I +T + G Y+C A E + +
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQH 582
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 6e-04
Identities = 42/293 (14%), Positives = 74/293 (25%), Gaps = 32/293 (10%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKCSVQ--YAQDYPVIWMKVDRNKVTEPLPISTGSSL 78
P++ ++ G +V L C V+ + + + W + P S L
Sbjct: 120 KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDL 179
Query: 79 IIRDSRFAI-RYDTASSTYTLLVK---DIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134
S + S + T V + D I + P
Sbjct: 180 YTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGP 239
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGG--HPTPRISWRRE-NNAILPTGGSIYRG----- 186
V V+ + C P + NN + T +
Sbjct: 240 SVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS 299
Query: 187 -----SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE---FAPVITVPKPRLGQA 238
S L I + C N + + AP + V P +
Sbjct: 300 TLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEM 359
Query: 239 LQYDMDLECHVEAYPPP--AIVWIKED--------TQQVLTNNQHYSISHFAT 281
+ + L C V + P + W T+ VL ++ Y +
Sbjct: 360 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLR 412
|
| >2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A Length = 200 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 6e-04
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G V++ C+ Q + + W + + L + RF+ + L
Sbjct: 14 GAIVQINCTYQTSGFNGLFWYQQHAGEAPTFL-SYNVLDGLEEKGRFSSFLSRSKGYSYL 72
Query: 99 LVKDIQETDAGYYRCQV 115
L+K++Q D+ Y C V
Sbjct: 73 LLKELQMKDSASYLCAV 89
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 100.0 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 100.0 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 100.0 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 100.0 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 100.0 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 100.0 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 100.0 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 100.0 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 100.0 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 100.0 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 100.0 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 100.0 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 100.0 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 100.0 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 100.0 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 99.97 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.97 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 99.97 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 99.97 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.97 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 99.97 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.97 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 99.97 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.96 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 99.96 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.96 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.96 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.96 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.96 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.95 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.95 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.95 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 99.95 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.95 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.95 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.95 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.95 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.95 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.95 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.95 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.95 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.95 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.95 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.95 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.95 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.95 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.94 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.94 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.94 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.94 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.94 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.94 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.94 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.94 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.94 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.94 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.94 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.94 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.94 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.94 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.94 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.94 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.94 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.94 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.94 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.94 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.93 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.93 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.93 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.93 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.93 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.93 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.93 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.93 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.93 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.93 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.93 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.93 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.93 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.93 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.93 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.93 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.92 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.92 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.92 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.92 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.92 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.92 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.92 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.92 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.92 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.92 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.92 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.92 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.92 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.92 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.92 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.91 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.91 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.91 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.91 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.91 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.91 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.91 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.91 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.91 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.91 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.91 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.91 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.91 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.91 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.91 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.91 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.91 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.91 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.9 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.9 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.9 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.9 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.9 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.9 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.9 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.9 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.9 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.9 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.9 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.9 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.9 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.9 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.9 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.9 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.9 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.9 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.9 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.9 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.9 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.9 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.9 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.89 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.89 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.89 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.89 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.89 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.89 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.89 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.89 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.89 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.89 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.89 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.89 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.89 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.89 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.89 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.89 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.89 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.89 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.88 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.88 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.88 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.88 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.88 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.88 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.88 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.88 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.88 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.88 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.88 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.88 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.87 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.87 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.87 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.87 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.87 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.87 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.87 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.87 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.87 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.87 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.87 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.87 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.87 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.87 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.87 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.87 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.87 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.87 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.87 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.87 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.87 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.87 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.87 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.86 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.86 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.86 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.86 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.86 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.86 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.86 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.86 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.86 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.86 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.86 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.86 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.86 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.86 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.86 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.85 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.85 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.85 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.85 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.85 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.85 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.85 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.85 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.85 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.85 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.85 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.85 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.85 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.85 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.85 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.85 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.85 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.85 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.85 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.85 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.84 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.84 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.84 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.84 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.84 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.84 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.84 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.84 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.84 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.84 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.84 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.84 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.84 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.83 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.83 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.83 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.83 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.83 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.83 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.83 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.83 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.83 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.83 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.83 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.83 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.82 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.82 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.82 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.82 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.82 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.82 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.82 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.82 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.82 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.82 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.82 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.81 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.81 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.81 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.81 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.81 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.81 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.81 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.81 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.81 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.81 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.81 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.81 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.81 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.81 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.81 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.8 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.8 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.8 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.8 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.8 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.8 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.8 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.8 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.8 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.79 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.79 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.79 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.79 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.79 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.79 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.79 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.79 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.79 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.79 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.78 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.78 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.78 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.78 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.78 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.78 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.78 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.77 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.77 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.77 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.77 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.77 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.76 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.76 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.76 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.76 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.76 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.76 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.75 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.75 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.75 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.75 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.75 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.75 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.75 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.75 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.75 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.75 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.74 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.74 | |
| 3u1s_H | 267 | FAB PGT145 heavy chain; IGG, broadly neutralizing | 99.74 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.73 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.73 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.72 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.72 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.72 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.72 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.72 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.71 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.71 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.71 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.7 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.7 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.7 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.69 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.69 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.69 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 99.68 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.68 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 99.67 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.67 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.66 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.66 | |
| 1hxm_A | 229 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.65 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.65 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.64 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.64 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.64 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.63 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.63 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.63 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.62 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.62 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.62 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.62 | |
| 3bn3_B | 196 | ICAM-5, intercellular adhesion molecule 5, telence | 99.62 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.62 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.62 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.62 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.61 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.6 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.59 | |
| 1iam_A | 185 | ICAM-1, CD54, intercellular adhesion molecule-1; r | 99.59 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.59 | |
| 3f8u_B | 401 | Tapasin; endoplasmic reticulum, glycoprotein, immu | 99.59 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.59 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.59 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.59 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.59 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.58 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.58 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.58 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.57 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.57 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.57 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.57 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.56 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.55 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.55 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.54 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.54 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.54 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.53 | |
| 3bn3_B | 196 | ICAM-5, intercellular adhesion molecule 5, telence | 99.53 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.53 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.52 | |
| 3u1s_H | 267 | FAB PGT145 heavy chain; IGG, broadly neutralizing | 99.52 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.51 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.51 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.51 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.51 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.5 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.49 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.49 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.49 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.48 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.48 | |
| 2eys_A | 210 | NKT15; natural killer T cell receptor, immune syst | 99.48 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.48 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.48 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.47 | |
| 3c6l_A | 185 | TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus | 99.21 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.47 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.47 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.47 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.47 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.46 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.46 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.46 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.46 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.46 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.46 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.46 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.45 | |
| 4f9p_D | 254 | 103.2 anti-BTN3A1 antibody fragment; B7 superfamil | 99.45 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.45 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.45 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.45 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.45 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.45 | |
| 1hxm_A | 229 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.44 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.44 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.44 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.44 | |
| 2v9t_A | 117 | Roundabout homolog 1; structural protein-receptor | 99.44 | |
| 3so5_A | 112 | LIG-3, leucine-rich repeats and immunoglobulin-lik | 99.44 | |
| 3rgv_A | 200 | YAE62 TCR A chain; TCR, MHC, MHC class I, immune s | 99.44 | |
| 1gl4_B | 98 | Basement membrane-specific heparan sulfate proteog | 99.43 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.43 | |
| 3s35_X | 122 | Vascular endothelial growth factor receptor 2; ant | 99.43 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.43 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.43 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.42 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.42 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.42 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.42 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.42 | |
| 1zxq_A | 192 | ICAM-2, intercellular adhesion molecule-2; immunog | 99.42 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.42 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.42 | |
| 2nw2_A | 200 | ELS4 TCR alpha chain; T cell receptor, immune syst | 99.41 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.41 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.4 | |
| 1zox_A | 113 | CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I | 99.4 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.4 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.4 |
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=342.16 Aligned_cols=338 Identities=20% Similarity=0.341 Sum_probs=273.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...+....+.+|++++|.|.+.+.|.+.++|+|++..+.. +.++.... .....+|.|.+
T Consensus 196 ~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~--------------~~~~~~~~--~~~~~~L~i~~ 259 (570)
T 3b43_A 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP--------------GGNYKMTL--VENTATLTVLK 259 (570)
T ss_dssp CCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCT--------------TSSEEEEE--ETTEEEEEESS
T ss_pred CCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcC--------------CCcEEEEE--ECCEEEEEEcc
Confidence 466777777777789999999999999988899999998865421 12222211 12345899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 182 (386)
++.+|+|.|+|.+.|..+ ..+..+.|.|..+|.+.........+.+|+.+.|.|.+.|.|.+.+.|+|++..+......
T Consensus 260 v~~~D~G~Y~C~a~N~~g-~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~ 338 (570)
T 3b43_A 260 VTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKF 338 (570)
T ss_dssp BCGGGCEEEEEEEEETTE-EEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSE
T ss_pred cCcccCEEEEEEEECCCC-cEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcE
Confidence 999999999999998654 4467788889888877655444455789999999999999999999999999988765543
Q ss_pred EE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeE
Q psy8823 183 IY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIV 258 (386)
Q Consensus 183 ~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~ 258 (386)
.. ....|.|.+++.+|+|.|+|.+.|..+. ......|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.
T Consensus 339 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~ 417 (570)
T 3b43_A 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS 417 (570)
T ss_dssp EEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBC-CEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCE
T ss_pred EEEEECCEEEEEECCCCcccCEEEEEEEEeCCCE-EEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEE
Confidence 22 2457999999999999999999999887 567788999999998877777788899999999999999999999
Q ss_pred EEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceee
Q psy8823 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELL 338 (386)
Q Consensus 259 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~ 338 (386)
|++++.. +....++.+... .....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.....+....+.
T Consensus 418 W~k~g~~--l~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~ 490 (570)
T 3b43_A 418 WHKDKRE--LRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTV 490 (570)
T ss_dssp EEETTEE--CCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCB
T ss_pred EEECCEE--CcCCCCEEEEEc-----CCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceec
Confidence 9999988 555555443221 124679999999999999999999999999999999998777665566677788
Q ss_pred cCcceeeeEEecCCC---CCcccccceee-ecccc--------eeeeeeeeecccccCC
Q psy8823 339 PLRNVNMAVIFAEQP---TSWEPQRKQLN-CSSLL--------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 339 ~~~~~~~~c~~~~~p---~~W~~~~~~l~-~~~~~--------~~~~i~~v~~~d~~~~ 385 (386)
.|+.+.|.|.+.|.| ++|++|+..+. .+.+. ..|.|..+..+|++.|
T Consensus 491 ~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 549 (570)
T 3b43_A 491 VGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKY 549 (570)
T ss_dssp TTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEE
T ss_pred CCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEE
Confidence 999999999998887 79999986553 33322 2699999999999865
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=331.84 Aligned_cols=337 Identities=20% Similarity=0.372 Sum_probs=264.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...+.+..+.+|+++.|.|.+.+.+.+.|.|+|++..+.. +.++.... .....+|.|.+
T Consensus 100 ~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~--------------~~~~~~~~--~~~~~~L~i~~ 163 (570)
T 3b43_A 100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKD--------------DANLQTSF--IHNVATLQILQ 163 (570)
T ss_dssp CCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCC--------------CSSEEEEE--ETTEEEEEESS
T ss_pred CCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcC--------------CCCEEEEE--ECCEEEEEECc
Confidence 356666666677788999999999999988899999998865421 11111111 12345899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEe---cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVR---RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~ 179 (386)
++.+|+|.|+|.+.|..+. .+....|.|. .+|.+... +....+.+|+.++|.|.+.|.|++.++|+|++..+...
T Consensus 164 ~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~pp~~~~~-p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~ 241 (570)
T 3b43_A 164 TDQSHVGQYNCSASNPLGT-ASSSAKLTLSEHEVPPFFDLK-PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG 241 (570)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCCCCEEEEC-CCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTT
T ss_pred CChHHCEEEEEEEEeCCcE-EEEEEEEEEcCCCCCCccccC-CceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCC
Confidence 9999999999999987543 3444555554 24544433 33456788999999999999999999999999988665
Q ss_pred CceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCC-CcccccCCCcEEEEEEEEecCC
Q psy8823 180 GGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK-PRLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 180 ~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~ 254 (386)
..... ....|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+.... ....+.+|+.+.|.|.+.|.|.
T Consensus 242 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~ 320 (570)
T 3b43_A 242 GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE 320 (570)
T ss_dssp SSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEE-EEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSS
T ss_pred CcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCc-EEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCC
Confidence 44322 2468999999999999999999998886 5678889999999876543 3445778999999999999999
Q ss_pred CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCC
Q psy8823 255 PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQP 334 (386)
Q Consensus 255 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~ 334 (386)
+.+.|++++.. +.....+..... .....|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.....+..
T Consensus 321 p~v~W~k~~~~--l~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~ 393 (570)
T 3b43_A 321 IKVLWYKDETE--IQESSKFRMSFV-----ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHP 393 (570)
T ss_dssp CEEEEEETTEE--CCCSSSEEEEEE-----TTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCC
T ss_pred CEEEEeECCEE--CCCCCcEEEEEE-----CCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCc
Confidence 99999999988 544444433211 13567999999999999999999999999999999999988776666666
Q ss_pred ceeecCcceeeeEEecCCC---CCcccccceeeecccce--------eeeeeeeecccccCC
Q psy8823 335 SELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY--------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~--------~~~i~~v~~~d~~~~ 385 (386)
..+..|+.+.|.|.+.|.| ++|++|+..+..+.++. .|.|..|..+|++.|
T Consensus 394 ~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 455 (570)
T 3b43_A 394 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 455 (570)
T ss_dssp EEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred eeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEE
Confidence 7788999999999999888 79999999988776542 588999999999865
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=308.56 Aligned_cols=338 Identities=21% Similarity=0.346 Sum_probs=259.6
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
......+...|.+..+.+|++++|.|.+.+ .+.+.+.|+|++..+... .+.+.....+ ++|.
T Consensus 18 ~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~------------~~~~~~~~~~-----~~l~ 80 (403)
T 3laf_A 18 GRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALG------------MDDRKQQLPN-----GSLL 80 (403)
T ss_dssp -CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTT------------SCTTEEECTT-----SCEE
T ss_pred CceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccC------------CcccEEEecC-----CcEE
Confidence 444567888899999999999999999986 466779999988654211 0112222211 2566
Q ss_pred Eccc-----CCCCCeEEEEEeEEcc-cceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC
Q psy8823 100 VKDI-----QETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRREN 173 (386)
Q Consensus 100 i~~~-----~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~ 173 (386)
|.++ +.+|+|.|+|.+.+.. +...+..+.+.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus 81 i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~-~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~ 159 (403)
T 3laf_A 81 IQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ-TESITAFMGDTVLLKCEVIGDPMPTIHWQKNQ 159 (403)
T ss_dssp ECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSC-CCCEEEETTSCEEECCCEECSSCCEEEEEESS
T ss_pred EeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccC-CCcEEEEcCCeEEEEEEEcccCCCeEEEEECC
Confidence 7666 7789999999998643 334456678888877766543 45678899999999999999999999999999
Q ss_pred eeeCCCC---c-eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce------EeeCCCcccccCCCcE
Q psy8823 174 NAILPTG---G-SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV------ITVPKPRLGQALQYDM 243 (386)
Q Consensus 174 ~~~~~~~---~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~~ 243 (386)
..+.... . .......|.|.+++.+|+|.|+|.+.|..+......+.+.|...|. +...+....+.+|+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~ 239 (403)
T 3laf_A 160 QDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239 (403)
T ss_dssp SBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCE
T ss_pred EeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcE
Confidence 8774321 1 1123568999999999999999999998776555667787776653 3334555667889999
Q ss_pred EEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 244 DLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 244 ~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.|.|.+.+.|.+.+.|++++..+.... ..+.. .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 240 ~l~C~~~~~p~~~~~W~~~~~~~~~~~-~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 310 (403)
T 3laf_A 240 VLECCVSGYPPPSFTWLRGEEVIQLRS-KKYSL--------LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL 310 (403)
T ss_dssp EECCEEEEESCCEEEEEETTEECCCSS-SSEEE--------ETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEcCCCCCCeEEEEECCeeccCCC-ceEEE--------CCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 999999999999999999998732211 12111 134679999999999999999999999999999999998
Q ss_pred ecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccce-----eeeeeeeecccccCC
Q psy8823 324 IIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY-----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 324 ~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~-----~~~i~~v~~~d~~~~ 385 (386)
.+|.....+....+..|+.++|.|.+.+.| ++|++++..+..+.+.. .|.|..+..+|++.|
T Consensus 311 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 380 (403)
T 3laf_A 311 VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFY 380 (403)
T ss_dssp EEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEE
T ss_pred CCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEE
Confidence 877655555667788899999999998877 68999999988776543 599999999998765
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-43 Score=308.48 Aligned_cols=335 Identities=19% Similarity=0.257 Sum_probs=249.9
Q ss_pred cCCeeeeeccceee---ecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 23 RTPTISYISQEQIK---DIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 23 ~~p~i~~~~~~~~v---~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
..|.|...|....+ .+|+.+.|.|.+.+.|.+.|+|+|++..+... .+.++... +++|.
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~------------~~~~~~~~------~g~l~ 65 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIG------------MDFRYSVV------DGSLL 65 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----------------CEEEE------TTEEE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCC------------CCccEEEE------CCEEE
Confidence 45778888877765 58999999999999999999999988654210 11122221 12577
Q ss_pred Eccc-CCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeC
Q psy8823 100 VKDI-QETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAIL 177 (386)
Q Consensus 100 i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~ 177 (386)
|.+. +.+|+|.|+|.+.|..+...+....+.+...+.+.......+.+.+|+.+.|.|... +.+.+.+.|++++..+.
T Consensus 66 i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~ 145 (384)
T 3kld_A 66 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY 145 (384)
T ss_dssp EESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECC
T ss_pred EcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE
Confidence 7775 789999999999987766555566666655444443344557788999999999763 56778999999998765
Q ss_pred CCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCcee--eeEEEEEE-------ecceEee-CCCcccccCCCcEEE
Q psy8823 178 PTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTR--RNIAVEVE-------FAPVITV-PKPRLGQALQYDMDL 245 (386)
Q Consensus 178 ~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~-~~~~~~~~~g~~~~l 245 (386)
....... ....|.|.+++.+|+|.|+|.+.|..+.... ....+.+. +.|.+.. .+....+.+|+.+.|
T Consensus 146 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l 225 (384)
T 3kld_A 146 QDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225 (384)
T ss_dssp CSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEE
T ss_pred eeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEE
Confidence 4443332 3457999999999999999999998765221 11122221 2344333 344566788999999
Q ss_pred EEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 246 ~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
.|.+.|.|.|.+.|++++... +....... ...+.|.|.++..+|+|.|+|.|.|..|....+..|.|...
T Consensus 226 ~C~~~g~P~p~i~W~k~~~~~-~~~~~~~~---------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~ 295 (384)
T 3kld_A 226 ECFALGNPVPTILWRRADGKP-IARKARRH---------KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ 295 (384)
T ss_dssp EEEEEEESCCEEEEEETTCCC-CCTTCEEC---------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEEEeecCCCcEEEEeCCCcc-ccccceec---------CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecC
Confidence 999999999999999965431 22211110 13567999999999999999999999999999999999888
Q ss_pred CCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccce----eeeeeeeecccccCC
Q psy8823 326 PVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 326 p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~----~~~i~~v~~~d~~~~ 385 (386)
|..........+..|+.+.|.|.+.|.| ++|++||..+..+.++. .|.|..|..+|++.|
T Consensus 296 P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y 362 (384)
T 3kld_A 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMY 362 (384)
T ss_dssp EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEE
T ss_pred CccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEE
Confidence 7765556667788899999999998887 79999999998776654 699999999999876
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=281.17 Aligned_cols=277 Identities=23% Similarity=0.409 Sum_probs=228.0
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|....+.+|++++|.|.+.+.+.+.+.|++++..+.. +.++.... .....+|.|.
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~--------------~~~~~~~~--~~~~~~L~i~ 66 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP--------------GGNYKMTL--VENTATLTVL 66 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCS--------------SSSEEEEE--ETTEEEEEES
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcC--------------CCcEEEEE--cCCEEEEEEe
Confidence 4688999999999999999999999999888889999998865421 12222221 1235689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.+..+ ..+..+.|.|..+|.+.........+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 67 ~v~~~d~G~Y~C~~~n~~g-~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 145 (284)
T 2rik_A 67 KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 145 (284)
T ss_dssp SCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSS
T ss_pred cCCcccCEEEEEEEEECCc-eEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCc
Confidence 9999999999999997654 357788899999988776656667789999999999999999999999999988866544
Q ss_pred eEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 182 SIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 182 ~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
... ....|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+|.+...+....+..|+.+.|.|.+.|+|.+.+
T Consensus 146 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v 224 (284)
T 2rik_A 146 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV 224 (284)
T ss_dssp EEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEE
T ss_pred EEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCc-eeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEE
Confidence 322 2467999999999999999999998886 56788999999998877777777889999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.|++++.. +....++..... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 225 ~W~~~~~~--~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 225 SWHKDKRE--LRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEEETTEE--ECBTTTEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEECCEE--CcCCCCEEEEEc-----CCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 99999988 555554443221 124689999999999999999999999999999998874
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=303.73 Aligned_cols=332 Identities=14% Similarity=0.211 Sum_probs=222.6
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+...+.+..|.+|+++.|.|.+.+.|.+.+.|++++..+..... ...+. ....+|.|.+++.
T Consensus 50 ~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~--------~~~~~---------~~~~sL~I~~v~~ 112 (423)
T 3qs7_E 50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH--------FDLQN---------RGVVSMVILKMTE 112 (423)
T ss_dssp ------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB--------C--------------CEEEEEESSCCS
T ss_pred cceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccce--------ecccc---------ceEEEEEEeecCc
Confidence 355556677799999999999999988899999998754321100 00011 1223799999999
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR 185 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~ 185 (386)
+|+|.|+|.+.|..+ ..+..+.|.|..+|.... .....+..|+.+.|.|.+.|.|.|.++|++++.......... .
T Consensus 113 ~D~G~Y~C~a~N~~g-~~~~~~~l~V~~~p~~~~--~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~-~ 188 (423)
T 3qs7_E 113 TQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTL--RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEES-P 188 (423)
T ss_dssp SSCSEEEEEEEC--C-EEEEEEEEEEC-----CE--EEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------
T ss_pred ccCEEEEEEEEcCCC-cEEEEEEEEEecCccccc--cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccc-c
Confidence 999999999997644 446677888886665422 223345678889999999999999999999887542211100 0
Q ss_pred eeEEEE-CCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe-cCCCeeEEEeCC
Q psy8823 186 GSILKI-PQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKED 263 (386)
Q Consensus 186 ~~~l~i-~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~ 263 (386)
...... ..+...|+|.|+|.|.|..|......+.|.|..+|.. ++....+.+|+.+.|.|.+.| .|.|.+.|++++
T Consensus 189 ~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g 266 (423)
T 3qs7_E 189 AVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN 266 (423)
T ss_dssp -CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESS
T ss_pred ccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECC
Confidence 000000 0115789999999999998875555577777766654 344567788999999999999 677899999999
Q ss_pred eeeeeecCceeEEeeeeec-CceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCC--CCCCceeecC
Q psy8823 264 TQQVLTNNQHYSISHFATA-DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP--QTQPSELLPL 340 (386)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--~~~~~~~~~~ 340 (386)
.. +.....+........ .......|.|.++..+|+|.|+|.|.|. ...++.|.|...|.... ......+..|
T Consensus 267 ~~--l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G 341 (423)
T 3qs7_E 267 KA--LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQY 341 (423)
T ss_dssp SB--CCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTT
T ss_pred EE--ccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCC
Confidence 87 433322221111111 1234567999999999999999999999 67778888876654321 1234566788
Q ss_pred cceeeeEEecCCC---CCcccccceeeeccc----ceeeeeeeeecccccCC
Q psy8823 341 RNVNMAVIFAEQP---TSWEPQRKQLNCSSL----LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 341 ~~~~~~c~~~~~p---~~W~~~~~~l~~~~~----~~~~~i~~v~~~d~~~~ 385 (386)
+.+.|.|.+.|.| ++|++||..|..+.+ ...+.+..++.+|++.|
T Consensus 342 ~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~Y 393 (423)
T 3qs7_E 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEY 393 (423)
T ss_dssp CCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCE
T ss_pred CeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCEEE
Confidence 9999999998888 799999999988752 22333377788898876
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-42 Score=302.57 Aligned_cols=332 Identities=18% Similarity=0.237 Sum_probs=256.0
Q ss_pred cCCeeeeeccceee---ecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 23 RTPTISYISQEQIK---DIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 23 ~~p~i~~~~~~~~v---~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.+|.|...|.+..+ .+|+.++|.|.+.+.|.+.+.|++++..+... .+.++... +++|.
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~------------~~~~~~~~------~~~L~ 64 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG------------PDSRYRLV------AGDLV 64 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCS------------TTSSEEEE------TTEEE
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcC------------CCccEEee------CCeEE
Confidence 46888888888776 78999999999998888999999988654211 11223222 12799
Q ss_pred EcccCC-CCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeC
Q psy8823 100 VKDIQE-TDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAIL 177 (386)
Q Consensus 100 i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~ 177 (386)
|.++.. +|+|.|+|.+.|..+...+..+.|.|...|.+.........+.+|+.++|.|.+ .+.|.+.+.|++++..+.
T Consensus 65 i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~ 144 (382)
T 1cs6_A 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF 144 (382)
T ss_dssp EESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB
T ss_pred EecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccc
Confidence 999997 999999999998766555556777776666555444566789999999999996 567889999999987643
Q ss_pred C--CCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCce----eeeEEEEEE------ecceEeeC-CCcccccCCCc
Q psy8823 178 P--TGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGT----RRNIAVEVE------FAPVITVP-KPRLGQALQYD 242 (386)
Q Consensus 178 ~--~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~----~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~ 242 (386)
. ...... ....|.|.+++.+|+|.|+|.+.|..+... +..+.+.+. ++|.+... +....+.+|+.
T Consensus 145 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~ 224 (382)
T 1cs6_A 145 IPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224 (382)
T ss_dssp CCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCC
T ss_pred cccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCe
Confidence 2 111111 236799999999999999999998764321 223444432 35555443 44667889999
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.+.|.|.+.+.|++++.. +... .......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 225 v~l~C~~~g~p~~~i~W~~~~~~--~~~~-----------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 291 (382)
T 1cs6_A 225 VTLECFAFGNPVPQIKWRKLDGS--QTSK-----------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 291 (382)
T ss_dssp EEEECEEEEESCCEEEEEECCSC--CSCC-----------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEccCCCCEEEEEECCcc--cccE-----------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 99999999999999999998876 3221 1124678999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccce----eeeeeeeecccccCC
Q psy8823 323 SIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 323 ~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~----~~~i~~v~~~d~~~~ 385 (386)
...|.....+....+..|+.++|.|.+.|.| ++|+++|..+..+.++. .|.|..|..+|+..|
T Consensus 292 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 361 (382)
T 1cs6_A 292 HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMY 361 (382)
T ss_dssp EEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEE
T ss_pred ecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEE
Confidence 9887765556667888999999999998877 79999999998876654 699999999999865
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=307.66 Aligned_cols=339 Identities=20% Similarity=0.338 Sum_probs=256.0
Q ss_pred cccCCeeeee-ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 21 AQRTPTISYI-SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 21 ~~~~p~i~~~-~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
...+|.+... +....+.+|++++|.|.+.+.|.+.+.|+|++..+... .+.++.... .+++|.
T Consensus 13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~------------~~~~~~~~~----~~~~l~ 76 (404)
T 3p3y_A 13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIA------------KDPRVSMRR----RSGTLV 76 (404)
T ss_dssp CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGG------------GCSSCBCCS----SSCCCB
T ss_pred ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeee------------cCCcceEec----CCceEE
Confidence 3457778765 56677999999999999998888999999988654211 011111111 122444
Q ss_pred Ec----ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCe
Q psy8823 100 VK----DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENN 174 (386)
Q Consensus 100 i~----~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~ 174 (386)
|. +++.+|+|.|+|.+.|..+...+..+.|.|..+|...........+.+|+.++|.|.+ .+.|.+.+.|++++.
T Consensus 77 i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~ 156 (404)
T 3p3y_A 77 IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM 156 (404)
T ss_dssp CCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTS
T ss_pred EEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCc
Confidence 43 8889999999999998766666678889998888766555556789999999999999 788899999999876
Q ss_pred eeCCCCceE--EeeeEEEECCCCCCC-CeEEEEEEecCCCCce--eeeEEEEEEecce-------EeeCC---CcccccC
Q psy8823 175 AILPTGGSI--YRGSILKIPQITKED-RGTYYCVAENGVGKGT--RRNIAVEVEFAPV-------ITVPK---PRLGQAL 239 (386)
Q Consensus 175 ~~~~~~~~~--~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~--~~~~~l~v~~~p~-------~~~~~---~~~~~~~ 239 (386)
......... ..++.|.|.++..+| +|.|+|.+.|..+... ...+.+.+...+. +..+. ....+.+
T Consensus 157 ~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~ 236 (404)
T 3p3y_A 157 EPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLR 236 (404)
T ss_dssp CBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEET
T ss_pred cccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEec
Confidence 544333322 235679999999999 5999999999776532 2335555544322 22111 1234678
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|+.+.|.|.+.|+|.+.+.|++++.. +........ .....|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 237 G~~v~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 306 (404)
T 3p3y_A 237 GMDLLLECIASGVPTPDIAWYKKGGD--LPSDKAKFE--------NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306 (404)
T ss_dssp TSCEEEECCBCCSSCCEEEEEETTBC--CCTTTEEEE--------GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred CCCEEEEEEECCCCCCcEEEEECCEE--CCCCccccc--------ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEE
Confidence 99999999999999999999999987 433322111 13568999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccc-------eeeeeeeeecccccCC
Q psy8823 320 LFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLL-------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 320 l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~-------~~~~i~~v~~~d~~~~ 385 (386)
|.|...|.....+....+..|+.++|.|.+.|.| ++|++||..+..+... ..|.|..++.+|+..|
T Consensus 307 l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 382 (404)
T 3p3y_A 307 VRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVY 382 (404)
T ss_dssp EEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEE
T ss_pred EEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEE
Confidence 9999887655555667788899999999998887 7999999998766421 1699999999999865
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=313.01 Aligned_cols=328 Identities=15% Similarity=0.185 Sum_probs=249.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...+....+.+|++++|.|.+.+ .+.|++++..+. . .....+|.|.+
T Consensus 35 ~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~------------------~------~~~~~~L~I~~ 86 (524)
T 2ec8_A 35 SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET------------------N------ENKQNEWITEK 86 (524)
T ss_dssp CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC------------------E------EECSSEEEESS
T ss_pred CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc------------------c------cCccceEEEcc
Confidence 3455555666777999999999999875 899999886430 0 01223899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEE-cCeeeCCCCc
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRR-ENNAILPTGG 181 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~ 181 (386)
++.+|+|.|+|.+.+ + .+..+.|.|..+|... ..+....+.+|+.++|.|.+.+.+.+.++|++ ++..+.....
T Consensus 87 ~~~~D~G~Y~C~a~n--g--~~~~~~l~V~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~ 161 (524)
T 2ec8_A 87 AEATNTGKYTCTNKH--G--LSNSIYVFVRDPAKLF-LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLR 161 (524)
T ss_dssp CCSTTCEEEEEEETT--S--CEEEEEEECCCSSCSB-CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCE
T ss_pred cchhhCEEEEEeecC--C--cceEEEEEECCCCccc-ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCc
Confidence 999999999999976 2 2677888888776555 34455678899999999999887778999998 6666544333
Q ss_pred eEE-eeeEEEECCCCCCCCe-EEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCCC
Q psy8823 182 SIY-RGSILKIPQITKEDRG-TYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 182 ~~~-~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
... ....|.|.+++.+|+| .|+|.+.|..+...+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.+
T Consensus 162 ~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p 241 (524)
T 2ec8_A 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSS 241 (524)
T ss_dssp EEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTT
T ss_pred eeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCc
Confidence 322 3568999999999999 99999999876655567888886 67788777777788999999999999999988
Q ss_pred e-eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC---
Q psy8823 256 A-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ--- 331 (386)
Q Consensus 256 ~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~--- 331 (386)
. +.|++++..+.+......... ..........|.|.++..+|+|.|+|.|.|..|....++.|.|...|.....
T Consensus 242 ~~i~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~ 319 (524)
T 2ec8_A 242 VYSTWKRENSQTKLQEKYNSWHH--GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMI 319 (524)
T ss_dssp CEEEEEETTCSCCCCEEEEEEEC--SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESS
T ss_pred EEEEEEeCCCCCccccccccccc--cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCC
Confidence 6 999999977211111111111 1112235788999999999999999999999999999999999876653322
Q ss_pred CCCceeecCcceeeeEEecCCC----CCcccccceeeeccc-------------ceeeeeeeeecccccCC
Q psy8823 332 TQPSELLPLRNVNMAVIFAEQP----TSWEPQRKQLNCSSL-------------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 332 ~~~~~~~~~~~~~~~c~~~~~p----~~W~~~~~~l~~~~~-------------~~~~~i~~v~~~d~~~~ 385 (386)
.....+..|+.++|.|.+.+.| ++|++++..+..+.. ...|.|..++.+|++.|
T Consensus 320 ~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 390 (524)
T 2ec8_A 320 NTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTY 390 (524)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEE
T ss_pred CceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEE
Confidence 2346788999999999997776 689999999887651 23799999999999865
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=302.25 Aligned_cols=330 Identities=14% Similarity=0.201 Sum_probs=225.8
Q ss_pred eeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
+.+.+..|.+|++++|.|.+.+.+...+.|++++..+...... ..+.+ +..+|.|.+++.+|+
T Consensus 53 ~~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~--------~~~~r---------~~~SL~I~~v~~~D~ 115 (527)
T 3qs9_E 53 YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF--------DLQNR---------GVVSMVILKMTETQA 115 (527)
T ss_dssp ---CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC----------------------CEEEEEESSCCSSSC
T ss_pred eeeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCccccc--------CCCcc---------eEEEEEECcCChhhC
Confidence 3344666999999999999998888899999987643211100 01111 223799999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeE
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI 188 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 188 (386)
|.|+|.+.+..+ .....+.|.|. |..............|+.+.|.|.+.|.|.|.++|++++...............
T Consensus 116 G~Y~C~~~n~~~-~~~~~~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~ 192 (527)
T 3qs9_E 116 GEYLLFIQSEAT-NYTILFTVSIR--NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVK 192 (527)
T ss_dssp SEEEEEEEC--C-EEEEEEEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEE
T ss_pred eeEEEEEEeccc-cEEEEEEEEEC--CceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEE
Confidence 999999986543 23344445544 322222223344566888899999999999999999988765322111111112
Q ss_pred EEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeee
Q psy8823 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQV 267 (386)
Q Consensus 189 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~ 267 (386)
.....+...|+|.|+|.|.|..+......+.|.|..+|.+ ++....+.+|+.+.|.|.+. |.|.+.++|++++..
T Consensus 193 ~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~-- 268 (527)
T 3qs9_E 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA-- 268 (527)
T ss_dssp ECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSC--
T ss_pred EeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEE--
Confidence 2233455789999999999998875555678888777765 45567788999999999996 899999999999987
Q ss_pred eecCceeEEeeeeecC-ceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCC--CCCCceeecCccee
Q psy8823 268 LTNNQHYSISHFATAD-EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP--QTQPSELLPLRNVN 344 (386)
Q Consensus 268 ~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--~~~~~~~~~~~~~~ 344 (386)
+.....+......... ......|.|.++..+|+|.|+|.|.|. ...++.|.|...|.... ......+..|+.+.
T Consensus 269 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~ 345 (527)
T 3qs9_E 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFC 345 (527)
T ss_dssp CCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCC
T ss_pred CCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEE
Confidence 4443333222222111 224567999999999999999999998 67777888776654222 22335677889999
Q ss_pred eeEEecCCC---CCcccccceeeecccc----eeeeeeeeecccccCC
Q psy8823 345 MAVIFAEQP---TSWEPQRKQLNCSSLL----YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 345 ~~c~~~~~p---~~W~~~~~~l~~~~~~----~~~~i~~v~~~d~~~~ 385 (386)
|.|.+.|.| ++|++||+.|..+.++ ..|.|..|+++|++.|
T Consensus 346 L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y 393 (527)
T 3qs9_E 346 FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEY 393 (527)
T ss_dssp EEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCE
T ss_pred EEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEE
Confidence 999998887 6999999999877653 2799999999999876
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=297.19 Aligned_cols=333 Identities=16% Similarity=0.239 Sum_probs=245.7
Q ss_pred cCCeeeeecccee-eecCCcEEEEEEEeeCCCCcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQI-KDIGGTVELKCSVQYAQDYPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~-v~~G~~v~L~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.|...|...+ +.+|+.++|.|.+.+.|.+.|.|++ ++..+... .++.... .+++|.|
T Consensus 2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~--------------~~~~~~~----~~~~L~i 63 (388)
T 2v5m_A 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDV--------------PGLRQIS----SDGKLVF 63 (388)
T ss_dssp EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCB--------------TTTBEEC----STTEEEE
T ss_pred CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccC--------------CCceEEc----CCceEEe
Confidence 4678888877644 7899999999999988999999999 55443110 1111111 1237999
Q ss_pred cccCCCC------CeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC---CeEEEEE
Q psy8823 101 KDIQETD------AGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT---PRISWRR 171 (386)
Q Consensus 101 ~~~~~~d------~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~ 171 (386)
.+++.+| +|.|+|.+.|..+...+..+.|.+..+|.+... .....+.+|+.++|.|.+.+.++ +.+.|++
T Consensus 64 ~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~ 142 (388)
T 2v5m_A 64 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT 142 (388)
T ss_dssp CCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCB-CCCEEEETTSCEEECCBCCTTTTTTEEEEEEEE
T ss_pred cccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccC-ccceeeecCCcEEEEEECcCCCCCCcceEEEEe
Confidence 9999987 999999999876655566778888777765543 34567889999999999977653 6899999
Q ss_pred cCeeeCCCC-----c-eEEeeeEEEECCCCCCCC-eEEEEEEecCCCCceee---eEEEEEEec-----ceEe-eCCCcc
Q psy8823 172 ENNAILPTG-----G-SIYRGSILKIPQITKEDR-GTYYCVAENGVGKGTRR---NIAVEVEFA-----PVIT-VPKPRL 235 (386)
Q Consensus 172 ~~~~~~~~~-----~-~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~~~---~~~l~v~~~-----p~~~-~~~~~~ 235 (386)
++..+.... . .......|.|.+++.+|+ |.|+|.+.|..+..... ...+.|..+ |.+. ......
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~ 222 (388)
T 2v5m_A 143 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL 222 (388)
T ss_dssp TTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCE
T ss_pred CCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCce
Confidence 987763221 1 122356799999999999 99999999875432221 134555543 2211 112234
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeee----eecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQV----LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.+.+|+.+.|.|.+.|+|.+.+.|++++.... .....++. .....|.|.++..+|+|.|+|.|.|..
T Consensus 223 ~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 293 (388)
T 2v5m_A 223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK---------QVSGTLIIKDAVVEDSGKYLCVVNNSV 293 (388)
T ss_dssp EEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE---------EETTEEEESSCCGGGCEEEEEEEECSS
T ss_pred EEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCcee---------cccCEEEECcCCHHHCeEEEEEEecCC
Confidence 56789999999999999999999999754311 11111111 135689999999999999999999999
Q ss_pred CceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 312 GTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 312 g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
|..+.++.|.|..+|.....+....+..|+.++|.|.+.|.| ++|++||..+..+. ..|.|..|..+|++.|
T Consensus 294 g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~--~~L~i~~v~~~d~G~Y 368 (388)
T 2v5m_A 294 GGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--SVLRIESVKKEDKGMY 368 (388)
T ss_dssp CEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS--SEEEESSCCGGGCEEE
T ss_pred CceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCC--CEEEEecCChhhCEEE
Confidence 999999999998776544344456778899999999998877 79999999987654 3699999999999865
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-41 Score=297.38 Aligned_cols=336 Identities=17% Similarity=0.221 Sum_probs=243.9
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.|...|....+.+|+.++|.|.+.+ .+.+.+.|++++..+.... .++... ..+++|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~-------------~~~~~~----~~~~~L~i 66 (395)
T 1bih_A 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE-------------HNAALR----KDEGSLVF 66 (395)
T ss_dssp -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTT-------------TTEEEC----TTSCCEEE
T ss_pred CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCccccc-------------ceEEEe----cCCceEEE
Confidence 46789999998889999999999999998 7888999999887652210 011111 12337999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEec--CCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRR--PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAIL 177 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~ 177 (386)
.+++.+|+|.|+|.+.+..+...+..+.|.|.. .|.+ .+....+.+|+.+.|.|.+ .+.|.+.+.|++++....
T Consensus 67 ~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~---~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~ 143 (395)
T 1bih_A 67 LRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA---KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGAD 143 (395)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC---EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSC
T ss_pred ecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc---CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcC
Confidence 999999999999999987655444445555432 2322 1234557799999999996 889999999999862111
Q ss_pred C-------CCc-eEEeeeEEEECCCCCCCCe---EEEEEEecCCCCceeeeE--EEEEE----------ecceEeeCCCc
Q psy8823 178 P-------TGG-SIYRGSILKIPQITKEDRG---TYYCVAENGVGKGTRRNI--AVEVE----------FAPVITVPKPR 234 (386)
Q Consensus 178 ~-------~~~-~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~~~~~~~~~--~l~v~----------~~p~~~~~~~~ 234 (386)
. ... .....+.|.|.+++.+|+| .|+|.+.|..+....... .+.+. ..|.+ .+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~ 221 (395)
T 1bih_A 144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKD 221 (395)
T ss_dssp GGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCS
T ss_pred cccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCc
Confidence 1 111 1123457999999999999 999999998776322111 11111 12222 2345
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
..+.+|+.+.|.|.+.|.|.+.+.|++++..+......++.. ........|.|.++..+|+|.|+|.|.|..|..
T Consensus 222 ~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 296 (395)
T 1bih_A 222 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR-----HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296 (395)
T ss_dssp EEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES-----CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred eEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEE-----EecCCCceEEEccCChhhCEEEEEEEEeCCCCc
Confidence 667889999999999999999999999998732222222211 111123479999999999999999999999987
Q ss_pred ee-EEEEEEEecCCCCCCCCC-ceeecCcceeeeEEecCCC---CCcccccceeeecccce----eeeeeeeecccccCC
Q psy8823 315 EK-TVELFESIIPVCPPQTQP-SELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLY----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 315 ~~-~~~l~v~~~p~~~~~~~~-~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~----~~~i~~v~~~d~~~~ 385 (386)
.. ++.|.|..+|.....+.. ..+..|+.++|.|.+.|.| ++|+++|..+..+ ++. .|.|..++.+|++.|
T Consensus 297 ~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y 375 (395)
T 1bih_A 297 QKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDSGLVIKGVKNGDKGYY 375 (395)
T ss_dssp EEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETTEEEESSCCSTTCEEE
T ss_pred eEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEECCEEEEeeCCcccCEEE
Confidence 66 899999888765544444 6778999999999998877 7999999998755 222 799999999999765
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=271.21 Aligned_cols=277 Identities=19% Similarity=0.386 Sum_probs=216.6
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
++.+.+.|.+..+.+|++++|.|.+.+.+ .+.+.|++ ++..+.. ...++.... ......+|.|.
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~-------------~~~~~~~~~-~~~~~~~L~i~ 67 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-------------NQQRISVVW-NDDDSSTLTIY 67 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCS-------------SCSSEEEEE-EETTEEEEEEC
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECcc-------------CCceEEEEE-cCCCeEEEEEe
Confidence 67889999999999999999999998766 68899999 5543311 111222211 11245689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 68 ~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~ 146 (291)
T 1qz1_A 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146 (291)
T ss_dssp SCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEEC-CSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCC
T ss_pred cCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCC-CCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCC
Confidence 999999999999999877666678888999888876654 3456788999999999999999999999999987654322
Q ss_pred ---eEEeeeEEEECCCCCCCCeEEEEEEecCC-CCceeeeEEEEEEecceEeeCCC--cccccCCCcEEEEEEEEecCCC
Q psy8823 182 ---SIYRGSILKIPQITKEDRGTYYCVAENGV-GKGTRRNIAVEVEFAPVITVPKP--RLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 182 ---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
....+..|.|.+++.+|+|.|+|.+.|.. +......+.+.|..+|.+..... ...+..|+.+.|.|.+.|.|.|
T Consensus 147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p 226 (291)
T 1qz1_A 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226 (291)
T ss_dssp TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC
T ss_pred ceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC
Confidence 12235679999999999999999999865 33345677888888888766443 4567889999999999999999
Q ss_pred eeEEEeCCeeeeeecCc----eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 256 AIVWIKEDTQQVLTNNQ----HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 256 ~~~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.+.|++++.. +.... ++... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 227 ~i~W~~~g~~--~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 227 TMSWTKDGEP--IENEEEDDEKHIFS-------DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEEEEETTEE--CCCC--CCSSEEEC-------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cEEEEECCEE--CcCCCCCCcceEEc-------CCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 9999999987 43332 22211 1346899999999999999999999999999999998863
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=272.13 Aligned_cols=277 Identities=21% Similarity=0.384 Sum_probs=204.2
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+. ..++............|.|
T Consensus 3 ~~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~---------------~~~~~~~~~~~~~~~~L~i 67 (304)
T 2yd9_A 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN---------------SQRFETIEFDESAGAVLRI 67 (304)
T ss_dssp -CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC----------------------CTTEEEEEETTTTEEEEEE
T ss_pred CccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECC---------------CCceEEEEecCCCceEEEE
Confidence 3467899999999999999999999999988888999999886541 1222222112223468999
Q ss_pred cccCC-CCCeEEEEEeEEcccceeeeEEEEEEecC-------CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc
Q psy8823 101 KDIQE-TDAGYYRCQVIIGINNKISAEVDLQVRRP-------PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE 172 (386)
Q Consensus 101 ~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~ 172 (386)
.+++. +|+|.|+|.+.+..+. .+..+.|.|..+ |.+... +....+.+|+.+.|.|.+.|.|.+.+.|+++
T Consensus 68 ~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~-~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~ 145 (304)
T 2yd9_A 68 QPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMG-PQLKVVERTRTATMLCAASGNPDPEITWFKD 145 (304)
T ss_dssp CSCCTTTTCSEEEEEEECSSCE-ECCEEEEEEECGGGCCTTCCEEEEC-CCCEEEETTSCEEECCEEECSSCCEEEEEET
T ss_pred ecccccCCCeEEEEEEECCCCe-EEEEEEEEEeccccCCCCCCeeecC-CccEEEeCCCeEEEEEECccCCCCeEEEEEC
Confidence 99998 9999999999876544 567778888765 333333 3456788999999999999999999999999
Q ss_pred CeeeCCCCc----eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE---ecceEeeCCCcccccCCCcEEE
Q psy8823 173 NNAILPTGG----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE---FAPVITVPKPRLGQALQYDMDL 245 (386)
Q Consensus 173 ~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l 245 (386)
+..+..... .......|.|.+++.+|+|.|+|.+.|..+...+....+.|. .+|.+...+....+.+|+.+.|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l 225 (304)
T 2yd9_A 146 FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225 (304)
T ss_dssp TEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEE
T ss_pred CEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEE
Confidence 988754321 122345899999999999999999999887644333455553 5677777777778899999999
Q ss_pred EEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 246 ECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 246 ~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
.|.+.|.|.|.+.|++++.. +....... .....|.+.++ +|+|.|+|.|.|..|..+.++.|.|...
T Consensus 226 ~C~~~g~p~p~v~W~~~~~~--l~~~~~~~---------~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 226 TCVAVGSPMPYVKWMQGAED--LTPEDDMP---------VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp EEEEEEESCCEEEEEETTEE--CSCSSSCC---------BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred EEEEeeeCCCEEEEEECCEE--CCCccccc---------CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence 99999999999999999987 43332211 13445666655 6899999999999999999999999876
Q ss_pred CC
Q psy8823 326 PV 327 (386)
Q Consensus 326 p~ 327 (386)
+.
T Consensus 293 ~~ 294 (304)
T 2yd9_A 293 PK 294 (304)
T ss_dssp --
T ss_pred cc
Confidence 65
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=297.89 Aligned_cols=310 Identities=17% Similarity=0.235 Sum_probs=228.2
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|.+...+....+.+|+.++|.|.+.+.+.+.+.|++ ++..+. .+.++....+ ..|.|.+
T Consensus 114 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~--------------~~~~~~~~~~-----~~L~i~~ 174 (524)
T 2ec8_A 114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLP--------------KDLRFIPDPK-----AGIMIKS 174 (524)
T ss_dssp SSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCC--------------SSCEEEEETT-----TEEEEES
T ss_pred CCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcC--------------CCCceeECCC-----ccEEEec
Confidence 3444455667778999999999999877768899998 443321 1122222221 2799999
Q ss_pred cCCCCCe-EEEEEeEEcccceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCe-EEEEEcCeee
Q psy8823 103 IQETDAG-YYRCQVIIGINNKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR-ISWRRENNAI 176 (386)
Q Consensus 103 ~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~ 176 (386)
++.+|+| .|+|.+.+..+...+..+.|.|. .+|.+... +....+.+|+.++|.|.+.+.|.+. ++|++++..+
T Consensus 175 ~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~-~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~ 253 (524)
T 2ec8_A 175 VKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVS-KASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT 253 (524)
T ss_dssp CCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECS-CSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSC
T ss_pred cchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEec-CCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCC
Confidence 9999999 99999987655444557778876 56666544 3455789999999999999988876 9999999873
Q ss_pred --CCCCc-------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCC---CcccccCCCcEE
Q psy8823 177 --LPTGG-------SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK---PRLGQALQYDMD 244 (386)
Q Consensus 177 --~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~ 244 (386)
..... .......|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+|.+...+ ....+.+|+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~ 332 (524)
T 2ec8_A 254 KLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGS-ANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332 (524)
T ss_dssp CCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCE-EEEEEEEEEESSCEEEEEESSCSEEEECTTCCEE
T ss_pred ccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCc-eEEEEEEEEeccCceEeecCCCceEEEcCCCcEE
Confidence 21111 2234678999999999999999999998887 4558899999988876543 356788999999
Q ss_pred EEEEEEecCCCe-eEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 245 LECHVEAYPPPA-IVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 245 l~C~~~g~p~~~-~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|.|.+.|+|.|. +.|++++.. +.... ++.. ............|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 333 l~C~~~g~P~p~~v~W~k~g~~--~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V 409 (524)
T 2ec8_A 333 LIVEYEAFPKPEHQQWIYMNRT--FTDKWEDYPK-SENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409 (524)
T ss_dssp EEEEEEEESCCCEEEEESSSCB--CSSSBCCEES-CCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEEeecCCCcEEEEEECCee--ccCCccceeE-EccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEE
Confidence 999999999998 999999987 44333 2211 111111224678999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCceeecCcceeeeEEecCCC---CCccccccee
Q psy8823 323 SIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQL 363 (386)
Q Consensus 323 ~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l 363 (386)
..+|....... ...| +|.|.+.|.| ++|++++..+
T Consensus 410 ~~~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~ 447 (524)
T 2ec8_A 410 NTKPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTE 447 (524)
T ss_dssp CEEEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----
T ss_pred ecCCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcc
Confidence 87765332221 2233 9999998888 7999998766
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=294.37 Aligned_cols=349 Identities=13% Similarity=0.175 Sum_probs=235.1
Q ss_pred eeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
..|....+.+|++++|.|.+.+.+.+.+.|+|++.......+...........+.|+.. ......++|.|.+++.+|+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~L~I~~v~~~D~ 82 (523)
T 2rcj_C 5 TQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSG--SKSGTSASLAISGLEAEDE 82 (523)
T ss_pred ccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEE--ecCCCEEEEEECCCChhhC
Confidence 34667779999999999999888888999999763221111111000000011234442 2334567899999999999
Q ss_pred eEEEEEeEEcccc--eeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCC
Q psy8823 109 GYYRCQVIIGINN--KISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAILPTG 180 (386)
Q Consensus 109 G~Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~ 180 (386)
|.|+|.+.+..+. .....+.|.|. .+|.+.... ....+.+|+.++|.|.+.|.+++ .++|+++|..+....
T Consensus 83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~ 161 (523)
T 2rcj_C 83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFP-PSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGV 161 (523)
T ss_pred EEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecC-CcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCce
Confidence 9999999876432 22345667773 455444332 23345679999999999887654 899999998765332
Q ss_pred ce----------EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE----EEecceEeeCCCcccccCCCcEEEE
Q psy8823 181 GS----------IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE----VEFAPVITVPKPRLGQALQYDMDLE 246 (386)
Q Consensus 181 ~~----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~ 246 (386)
.. ......|.|.++..+|+|.|+|.+.|..+. ....+.+. +..+|.+....+...+.+|+.+.|.
T Consensus 162 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~ 240 (523)
T 2rcj_C 162 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST-VEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALG 240 (523)
T ss_pred EeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcc-cccceeeeecCCCCcCCEEEecCCCcccccCCceEEE
Confidence 11 112347999999999999999999998765 22333322 2345655544444556789999999
Q ss_pred EEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 247 CHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 247 C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.+.|. |.| .+.|++++........... ..........+.|.|.++..+| |.|+|.|.|..|.......|.+..
T Consensus 241 C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~---~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~ 316 (523)
T 2rcj_C 241 CLVKDYFPQPVTVSWNSGALTSGVHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLS 316 (523)
T ss_pred EEEeceeCCCeEEEEecCCcccceEeCCcE---ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCc
Confidence 999886 877 8999999976221111111 0111112235689999999999 999999999999987777776654
Q ss_pred cCCCCCC-CCCce-eecCcceeeeEEecCCC-------CCcccccceeeecccc-------------eeeeeeeeecccc
Q psy8823 325 IPVCPPQ-TQPSE-LLPLRNVNMAVIFAEQP-------TSWEPQRKQLNCSSLL-------------YQCVLPLVDRQDR 382 (386)
Q Consensus 325 ~p~~~~~-~~~~~-~~~~~~~~~~c~~~~~p-------~~W~~~~~~l~~~~~~-------------~~~~i~~v~~~d~ 382 (386)
.|..... +.... +..|+.+.|.|.+.|.| ++|++||+.+..+... ..|.|..+..+|+
T Consensus 317 ~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~ 396 (523)
T 2rcj_C 317 LPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDG 396 (523)
T ss_pred CceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCC
Confidence 4432111 11222 67899999999997632 6899999998655321 1488999999998
Q ss_pred cCC
Q psy8823 383 LMH 385 (386)
Q Consensus 383 ~~~ 385 (386)
..|
T Consensus 397 G~Y 399 (523)
T 2rcj_C 397 KEY 399 (523)
T ss_pred CeE
Confidence 765
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=270.35 Aligned_cols=279 Identities=22% Similarity=0.384 Sum_probs=212.4
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEec-CCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKV-DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.+.+.+.+..+.+|++++|.|.+.+.+. .+.|+++ +..+. .+.++....+ ....+|.|
T Consensus 2 ~~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~--------------~~~~~~~~~~--~~~~~L~i 64 (291)
T 2wim_A 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKII--------------STQRVVVQKE--GVRSRLTI 64 (291)
T ss_dssp -CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCC--------------CBTTEEEEEE--TTEEEEEE
T ss_pred CCCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCcc--------------CCCcEEEecC--CCEEEEEE
Confidence 35788999999999999999999999997664 8999994 43321 1222222221 23458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~ 180 (386)
.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus 65 ~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~ 143 (291)
T 2wim_A 65 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV-VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 143 (291)
T ss_dssp CSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSC-CCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCC
T ss_pred ccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeC-CCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccC
Confidence 9999999999999999876666567788888887766543 345678899999999999999999999999988765422
Q ss_pred c---eEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEecceEeeCCC--cccccCCCcEEEEEEEEecCC
Q psy8823 181 G---SIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEFAPVITVPKP--RLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 181 ~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~ 254 (386)
. ....+..|.|.+++.+|+|.|+|.+.+..+. .....+.+.+..+|.+..... ...+.+|+.+.|.|.+.|+|.
T Consensus 144 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 223 (291)
T 2wim_A 144 DNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE 223 (291)
T ss_dssp CSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSC
T ss_pred CceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCC
Confidence 1 1123567999999999999999999987643 345667888888887765544 456778999999999999999
Q ss_pred CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 255 PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 255 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|.+.|++++.. +....++... .....|.|.++..+|+|.|+|.|.|..|..++++.|.|..++.
T Consensus 224 p~v~W~~~g~~--~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~ 287 (291)
T 2wim_A 224 PAISWFRNGKL--IEENEKYILK-------GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287 (291)
T ss_dssp CEEEEEETTEE--CCCTTTEEEC-------STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred CeEEEEECCEE--CcCCccEEEc-------CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence 99999999987 5544444322 1356899999999999999999999999999999999987653
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=305.55 Aligned_cols=341 Identities=18% Similarity=0.290 Sum_probs=264.2
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceee---ecCCCcceEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAI---RYDTASSTYTL 98 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L 98 (386)
..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.. ..........|
T Consensus 427 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~--------------~~~~~~~~~~~~~~~~~~L 492 (816)
T 3dmk_A 427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANN--------------DRYQVGQYVTVNGDVVSYL 492 (816)
T ss_dssp SCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSC--------------TTEEEEEEECTTSCEEEEE
T ss_pred cCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCC--------------CCcccccEEecCCCcEEEE
Confidence 45677877777788999999999999999999999999988654211 11111 11122234579
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
.|.+++.+|+|.|+|.+.|..+ .....+.|.|..+|.+... ....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 493 ~i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~~~~--~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~ 569 (816)
T 3dmk_A 493 NITSVHANDGGLYKCIAKSKVG-VAEHSAKLNVYGLPYIRQM--EKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPI 569 (816)
T ss_dssp EESSCCTTTCEEEEEEEEETTE-EEEEEEEEEECSSCEECCC--CCEEEETTCCEEEECCEECSSEEEEEEEETTEESCC
T ss_pred EEeeccccCCEEEEEEEEECCC-eEEEEEEEEEecCCeeEcc--CCeEEecCCeEEEEEEecCCCCCEEEEEECCeEccc
Confidence 9999999999999999998754 3467788999888866433 345688999999999999999889999999988765
Q ss_pred CCceE-EeeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEEEEEecceEee-CCCcccccCCCcEEEEEEEEecCCC
Q psy8823 179 TGGSI-YRGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 179 ~~~~~-~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
..... ..++.|.|.++. .+|+|.|+|.+.|..+...+..+.+.|..+|.+.. ......+..|+.++|.|.+.+.+++
T Consensus 570 ~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~ 649 (816)
T 3dmk_A 570 NRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649 (816)
T ss_dssp STTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSC
T ss_pred CCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCC
Confidence 54433 246689999998 58999999999999887666778888888776543 3345567889999999999877665
Q ss_pred -eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCC
Q psy8823 256 -AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQP 334 (386)
Q Consensus 256 -~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~ 334 (386)
.+.|++++.. +........... ....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.....+..
T Consensus 650 ~~i~W~~~g~~--l~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~ 723 (816)
T 3dmk_A 650 LNIDWTLDGQA--ISEDLGITTSRV----GRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTD 723 (816)
T ss_dssp CEEEEEETTBC--CCGGGTCEEEEE----TTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCC
T ss_pred CEEEEEECCeE--cCCCCCeeEEEc----CCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeeccc
Confidence 9999999987 443333322211 123578999999999999999999999999999999999888875555556
Q ss_pred ceeecCcceeeeEEecCCC---CCcccccceee-------ecccce----eeeeeeeecccccCC
Q psy8823 335 SELLPLRNVNMAVIFAEQP---TSWEPQRKQLN-------CSSLLY----QCVLPLVDRQDRLMH 385 (386)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~-------~~~~~~----~~~i~~v~~~d~~~~ 385 (386)
..+..|+.++|.|.+.|.| ++|++++..+. .+.+.. .|.|..|+.+|++.|
T Consensus 724 ~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 788 (816)
T 3dmk_A 724 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 788 (816)
T ss_dssp EEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEE
T ss_pred ceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEE
Confidence 7788899999999998877 79999875432 222221 699999999999865
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=309.32 Aligned_cols=327 Identities=22% Similarity=0.354 Sum_probs=253.2
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
...+.+|+.++|.|.+.+.|.+.+.|+|++........ ...+.+... .+.+|.|.+++.+|+|.|+
T Consensus 257 ~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~--------~~~~~~~~~------~~~~L~i~~v~~~D~G~Y~ 322 (816)
T 3dmk_A 257 MKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQA--------VVLNDRVKQ------VSGTLIIKDAVVEDSGKYL 322 (816)
T ss_dssp EEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEE--------CCCSSSEEE------ETTEEEECSCCGGGCEEEE
T ss_pred ceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcc--------eecCCceEe------ccceEEECCCCHhHCEEEE
Confidence 35578999999999999989999999996544311100 001111111 1238999999999999999
Q ss_pred EEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEEC
Q psy8823 113 CQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIP 192 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~ 192 (386)
|.+.|..+. .+..+.|.|..++..... +....+.+|+.++|.|.+.+.|.+.++|++++..+... ...|.|.
T Consensus 323 C~a~n~~g~-~~~~~~l~V~~~~~~~~~-~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~------~~~L~i~ 394 (816)
T 3dmk_A 323 CVVNNSVGG-ESVETVLTVTAPLSAKID-PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------ESVLRIE 394 (816)
T ss_dssp EEEECSSCE-EEEEEEEEECEEEEEEEE-SSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC------SSEEEES
T ss_pred EEEEcCCCc-eEEEEEEEEcCCCceeeC-CCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC------CCEEEEc
Confidence 999976544 366677888766654433 34567889999999999999999999999999887543 3469999
Q ss_pred CCCCCCCeEEEEEEecCCCCceeeeEEEEE---EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeee
Q psy8823 193 QITKEDRGTYYCVAENGVGKGTRRNIAVEV---EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT 269 (386)
Q Consensus 193 ~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~ 269 (386)
+++.+|+|.|+|.+.|..+. ......+.| ..+|.+...+....+.+|+.+.|.|.+.|+|.+.+.|++++.. +.
T Consensus 395 ~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~--l~ 471 (816)
T 3dmk_A 395 SVKKEDKGMYQCFVRNDRES-AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKK--IA 471 (816)
T ss_dssp SCCGGGCEEEEEEEECSSCE-EEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEE--CC
T ss_pred CCCHHHCEEEEEEEECCCCc-EEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEE--CC
Confidence 99999999999999998775 444555655 3466676666667788999999999999999999999999988 55
Q ss_pred cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEe
Q psy8823 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~ 349 (386)
...++...............|.|.++..+|+|.|+|.|.|..|....++.|.|...|.. .......+..|+.++|.|.+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~-~~~~~~~v~~G~~v~l~C~~ 550 (816)
T 3dmk_A 472 NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI-RQMEKKAIVAGETLIVTCPV 550 (816)
T ss_dssp SCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEE-CCCCCEEEETTCCEEEECCE
T ss_pred CCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCee-EccCCeEEecCCeEEEEEEe
Confidence 55555544333333334567999999999999999999999999999999999876643 23445677889999999999
Q ss_pred cCCC---CCcccccceeeecccce-----eeeeeeeec-ccccCC
Q psy8823 350 AEQP---TSWEPQRKQLNCSSLLY-----QCVLPLVDR-QDRLMH 385 (386)
Q Consensus 350 ~~~p---~~W~~~~~~l~~~~~~~-----~~~i~~v~~-~d~~~~ 385 (386)
.+.| ++|++++..+..+.+.. .|.|..+.+ +|+..|
T Consensus 551 ~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y 595 (816)
T 3dmk_A 551 AGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATY 595 (816)
T ss_dssp ECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEE
T ss_pred cCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEE
Confidence 9888 79999999987766543 689999984 787654
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=294.73 Aligned_cols=312 Identities=19% Similarity=0.279 Sum_probs=240.9
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
..+..|+.+.|.|.+.+.+ +.+.|++++..+.. +.++.... .+..|.|.+++.+|+|.|+|
T Consensus 299 ~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~--------------~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C 359 (642)
T 1e07_A 299 NPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPV--------------SPRLQLSN----DNRTLTLLSVTRNDVGPYEC 359 (642)
T ss_pred eeEecCCcEEEEEECCCCC-ccEEEEECCccCCC--------------cCCEEEeC----CCCEEEEeccCcccCeeEEE
Confidence 4456688899999998765 68999998865421 12222221 12389999999999999999
Q ss_pred EeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECC
Q psy8823 114 QVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~ 193 (386)
.+.|..+...+..+.|.|..+|......+....+.+|+.++|.|.+.|.|.+.++|+++|..+.. +..|.|.+
T Consensus 360 ~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~-------~~~L~i~~ 432 (642)
T 1e07_A 360 GIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH-------TQELFISN 432 (642)
T ss_pred EEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC-------CceEEEcc
Confidence 99987766566778888887765443344556788999999999999999999999999987643 34699999
Q ss_pred CCCCCCeEEEEEEecCCCCce-eeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeee
Q psy8823 194 ITKEDRGTYYCVAENGVGKGT-RRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT 269 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~-~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~ 269 (386)
+..+|+|.|+|.+.|..+... +..+.+.|.. +|.+.. .....+.+|+.+.|.|.+. .|.+.+.|++++.. +.
T Consensus 433 ~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~-~~~~~i~W~~~g~~--l~ 508 (642)
T 1e07_A 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS-NNSKPVEDKDAVAFTCEPE-AQNTTYLWWVNGQS--LP 508 (642)
T ss_pred CChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEec-CCceeecCCCeEEEEEECC-CCCcEEEEEECCEe--CC
Confidence 999999999999999876532 2345566654 344432 3445677899999999998 47889999999988 55
Q ss_pred cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee-EEEEEEEecCCCCC-CCCCceeecCcceeeeE
Q psy8823 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK-TVELFESIIPVCPP-QTQPSELLPLRNVNMAV 347 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~~~-~~~~~~~~~~~~~~~~c 347 (386)
...++.+.. .+..|.|.++..+|+|.|+|.|.|..|.... ++.|.|...|..+. .+....+..|+.++|.|
T Consensus 509 ~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C 581 (642)
T 1e07_A 509 VSPRLQLSN-------GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSC 581 (642)
T ss_pred CCCcEEEcC-------CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEE
Confidence 544443321 2468999999999999999999999997654 68888887765333 23456778899999999
Q ss_pred EecCCC---CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 348 IFAEQP---TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 348 ~~~~~p---~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
.+.|.| ++|++||..+..+ ..|.|..+..+|++.|
T Consensus 582 ~~~g~p~p~v~W~~~g~~i~~~---~~L~i~~~~~~d~G~Y 619 (642)
T 1e07_A 582 HSASNPSPQYSWRINGIPQQHT---QVLFIAKITPNNNGTY 619 (642)
T ss_pred EeccCCCCeEEEEECCEECccC---ceEEECcccccCCeEE
Confidence 998887 6999999988754 3689999999999865
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=296.01 Aligned_cols=337 Identities=19% Similarity=0.233 Sum_probs=242.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
+++.+.+..+.+|++++|.|...+.+...+.|+|+........+. +.........+..+..+... ..+++|.|.+++.
T Consensus 2 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~-~~~~sL~I~~v~~ 80 (642)
T 1e07_A 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII-YPNASLLIQNIIQ 80 (642)
T ss_pred ceEeccCCcccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceee-ccCCcEEECCCCc
Confidence 566777888999999999999766666689999954322111111 11111000111111111111 1245899999999
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 182 (386)
+|+|.|+|.+.+.........+.|.|..+ |.+... ....+.+|+.+.|.|.+.+ |.+.+.|++++..+......
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~--~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~ 157 (642)
T 1e07_A 81 NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN--NSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRL 157 (642)
T ss_pred ccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEcc--CceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCce
Confidence 99999999998754444456677777763 333322 2345788999999999988 88899999999887655443
Q ss_pred EE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCeeEE
Q psy8823 183 IY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPAIVW 259 (386)
Q Consensus 183 ~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W 259 (386)
.. .+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|.++|. +...+....+.+|+.+.|.|.+.|+|.+.+.|
T Consensus 158 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W 237 (642)
T 1e07_A 158 QLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237 (642)
T ss_pred EEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEE
Confidence 32 3568999999999999999999998876556778888887664 33445556788999999999999999999999
Q ss_pred EeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee--EEEEEEEecCCCCCC-CCC-c
Q psy8823 260 IKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK--TVELFESIIPVCPPQ-TQP-S 335 (386)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~~p~~~~~-~~~-~ 335 (386)
++++.. +. ....|.|.++..+|+|.|+|.|.|..|.... .+.|.|...|..+.. ... .
T Consensus 238 ~~~g~~--i~----------------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~ 299 (642)
T 1e07_A 238 FVNGTF--QQ----------------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSN 299 (642)
T ss_pred EECCeE--cc----------------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCce
Confidence 999877 31 2456999999999999999999999987654 455655554332221 122 2
Q ss_pred eeecCcceeeeEEecCCC--CCcccccceeeecccce------eeeeeeeecccccCC
Q psy8823 336 ELLPLRNVNMAVIFAEQP--TSWEPQRKQLNCSSLLY------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 336 ~~~~~~~~~~~c~~~~~p--~~W~~~~~~l~~~~~~~------~~~i~~v~~~d~~~~ 385 (386)
.+..++.+.|.|.+.+.| ++|++||+.+..+.++. .|.|..++.+|+..|
T Consensus 300 ~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 357 (642)
T 1e07_A 300 PVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPY 357 (642)
T ss_pred eEecCCcEEEEEECCCCCccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeE
Confidence 333466799999998887 68999999987766543 699999999999865
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=285.97 Aligned_cols=310 Identities=18% Similarity=0.195 Sum_probs=223.4
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEE----eccceeeecCC-CcceEEEEEcccCCCCC
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII----RDSRFAIRYDT-ASSTYTLLVKDIQETDA 108 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~L~i~~~~~~d~ 108 (386)
..+.+|++++|.|.+.+.+.+.+.|++++....... ....... ...|+....+. ..++++|.|.+++.+|+
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~ 79 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGN----QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 79 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEE----ETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGC
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceecc----CccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHC
Confidence 458899999999999888888999999875421000 0000000 11232221100 12355899999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeE
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI 188 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 188 (386)
|.|+|.+.+. ...+.|.|...+ ..+. ..+.+|+.++|.|.+.+.|.+.+.|++++..+ ......
T Consensus 80 G~Y~C~~~n~-----~~~~~l~V~~~~---~~~~--~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~ 143 (363)
T 1wio_A 80 DTYICEVEDQ-----KEEVQLLVFGLT---ANSD--THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKT 143 (363)
T ss_dssp EEEEEEETTE-----EEEEEEEEEEEE---ESSC--SSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSE
T ss_pred EEEEEEEEEC-----CCcEEEEEEeCC---CCCc--eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceE
Confidence 9999998654 235566665411 1111 24789999999999988899999999987654 235678
Q ss_pred EEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe-----cCCCeeEEEeCC
Q psy8823 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-----YPPPAIVWIKED 263 (386)
Q Consensus 189 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-----~p~~~~~W~~~~ 263 (386)
|.|.+++.+|+|.|+|.+.|..+. ....+.+.|...|... ....+.+|+.+.|.|.+.+ +|.|.+.|++++
T Consensus 144 L~i~~v~~~d~G~Y~C~a~~~~~~-~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g 219 (363)
T 1wio_A 144 LSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAER 219 (363)
T ss_dssp EEECSBCGGGCEECEEEEEETTEE-EEECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESS
T ss_pred EEEeeCChhcCCEEEEEEecCCCe-EEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEEecCC
Confidence 999999999999999999987443 4455667676555432 3455778999999998877 778899999998
Q ss_pred eeeeeec--------CceeEEeeeeec-----CceeeeEEEEeecccCCCeEEEEEEEcC--CCceeeEEEEEEEecCCC
Q psy8823 264 TQQVLTN--------NQHYSISHFATA-----DEFTDTTIRVITIEKRQYGSYICRAANK--LGTSEKTVELFESIIPVC 328 (386)
Q Consensus 264 ~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~p~~ 328 (386)
.. +.. ...+........ .......|.|.++..+|+|.|+|.|.|. .|.....+.|.|...+
T Consensus 220 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~-- 295 (363)
T 1wio_A 220 AS--SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-- 295 (363)
T ss_dssp CC--CCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEEC--
T ss_pred CC--ccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEec--
Confidence 77 332 222222211100 0112448999999999999999999999 9999999999887332
Q ss_pred CCCCCCceeecCcceeeeEEecCCC-----CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 329 PPQTQPSELLPLRNVNMAVIFAEQP-----TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~c~~~~~p-----~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
|+.++|.|.+.+.| ++|+++++.+..+.+ |.|..|..+|++.|
T Consensus 296 -----------g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~~---l~i~~v~~~d~G~Y 343 (363)
T 1wio_A 296 -----------QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR---EKAVWVLNPEAGMW 343 (363)
T ss_dssp -----------CCSSSEEEEEESSCCTTCCEEEECSSSSCSEEES---SSEEEESSCCSEEE
T ss_pred -----------CCCeeEEEEEccccCCCccEEEEeCCCceeeeee---eeeeeeccccceeE
Confidence 77899999998875 589999999886554 58899999999865
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=284.78 Aligned_cols=343 Identities=17% Similarity=0.252 Sum_probs=242.0
Q ss_pred ccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
|....+.+|++++|.|.+.+.+. ..+.|+|++.......+....+.......+|+.+......++++|.|.+++.+|
T Consensus 7 P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D 86 (585)
T 2ocw_A 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 86 (585)
T ss_pred cceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCccc
Confidence 55677899999999999987654 379999988654211111111111112344565554445667799999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeC----C----
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPRISWRRENNAIL----P---- 178 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~----~---- 178 (386)
+|.|+|.+.+..+. .+..+.|.|..+|.+... +....+.+|+.++|.|.+.+. +.+.+.|++++.... .
T Consensus 87 ~G~Y~C~~~n~~~~-~~~~~~l~V~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~ 164 (585)
T 2ocw_A 87 SGRYKCGLGINSRG-LSFDVSLEVSQGPGLLND-TKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGY 164 (585)
T ss_pred CEEEEEEcccCCCC-ceEEEEEEEecCccccCC-CccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcc
Confidence 99999999876544 467788999888876543 556778999999999999765 456799999876421 1
Q ss_pred -----CCceEE--ee-----eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEE
Q psy8823 179 -----TGGSIY--RG-----SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246 (386)
Q Consensus 179 -----~~~~~~--~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~ 246 (386)
..+... .+ ..|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+| +....+.+|+.+.|.
T Consensus 165 ~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~-----p~~~~~~~G~~v~l~ 238 (585)
T 2ocw_A 165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNS-NKKNADLQVLKPE-----PELVYEDLRGSVTFH 238 (585)
T ss_pred cCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCcc-ccceEEEEEccCC-----CceeEEcCCCcEEEE
Confidence 111111 11 27999999999999999999998776 5667788886543 233456789999999
Q ss_pred EEEEecCC---CeeEEE-eCCee--eeeec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 247 CHVEAYPP---PAIVWI-KEDTQ--QVLTN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 247 C~~~g~p~---~~~~W~-~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
|.+ +.+. +.+.|+ +++.. ..+.. ..++.... ........|.|.++..+|+|.|+|.|.|..+
T Consensus 239 C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~ 314 (585)
T 2ocw_A 239 CAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNP---QDKDGSFSVVITGLRKEDAGRYLCGAHSDGQ 314 (585)
T ss_pred EEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeec---cCCCcEEEEEEccCChhhCEEEEEEEEcCCC
Confidence 997 5554 578886 77742 11111 11111110 0111223799999999999999999999644
Q ss_pred cee----eEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC---C----Cccc--ccc--eeeec---------cc
Q psy8823 313 TSE----KTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---T----SWEP--QRK--QLNCS---------SL 368 (386)
Q Consensus 313 ~~~----~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~----~W~~--~~~--~l~~~---------~~ 368 (386)
... .++.|.|...|.....+....+..|+.+.|.|.+.+.| + +|++ ||. .+..+ .+
T Consensus 315 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r 394 (585)
T 2ocw_A 315 LQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGR 394 (585)
T ss_pred ccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCC
Confidence 332 78889998888777666777788999999999998888 3 6999 887 55432 22
Q ss_pred c----------eeeeeeeeecccccCC
Q psy8823 369 L----------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 369 ~----------~~~~i~~v~~~d~~~~ 385 (386)
. ..|.|..|+.+|++.|
T Consensus 395 ~~~~~~~~~g~~~L~I~~v~~~D~G~Y 421 (585)
T 2ocw_A 395 LSLLEEPGNGTFTVILNQLTSRDAGFY 421 (585)
T ss_pred EEEeccCCCcEEEEEECCCChhhCEEE
Confidence 1 2399999999999865
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-37 Score=285.69 Aligned_cols=351 Identities=18% Similarity=0.173 Sum_probs=245.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeec-CCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY-DTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i 100 (386)
.+|.+...+....+.+|+.++|.|.+.+. +...+.|++++......... ..+.......+++.+.. ....+.++|.|
T Consensus 111 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~L~I 189 (585)
T 2ocw_A 111 QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVID-SSGYVNPNYTGRIRLDIQGTGQLLFSVVI 189 (585)
T ss_pred cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEec-CCcccCccccCcEEEEeccCCCcEEEEEE
Confidence 34566666777789999999999999854 45679999987643111000 00000001123343332 22344568999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeC-C-CeEEEE-EcCe---
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-T-PRISWR-RENN--- 174 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~-~~v~W~-~~~~--- 174 (386)
.+++.+|+|.|+|.+.+..+. .+..+.|.|..++ +..+.+.+|+.+.|.|.+.+.+ . +.+.|+ +++.
T Consensus 190 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~------p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~ 262 (585)
T 2ocw_A 190 NQLRLSDAGQYLCQAGDDSNS-NKKNADLQVLKPE------PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCD 262 (585)
T ss_pred ccCChhHCeEEEEEeccCCcc-ccceEEEEEccCC------CceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcc
Confidence 999999999999999865443 4667788887643 3345678999999999973322 2 678997 7773
Q ss_pred eeCC---------CCceEEe----e--eEEEECCCCCCCCeEEEEEEecCCCCce---eeeEEEEEEecceEeeCCCccc
Q psy8823 175 AILP---------TGGSIYR----G--SILKIPQITKEDRGTYYCVAENGVGKGT---RRNIAVEVEFAPVITVPKPRLG 236 (386)
Q Consensus 175 ~~~~---------~~~~~~~----~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~---~~~~~l~v~~~p~~~~~~~~~~ 236 (386)
.+.. ....... . ..|.|.+++.+|+|.|+|.+.|...... ...+.|.|..+|.+...+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~ 342 (585)
T 2ocw_A 263 VVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK 342 (585)
T ss_pred eEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccCCcceE
Confidence 1111 1111111 1 2799999999999999999999533311 2678899999888877777778
Q ss_pred ccCCCcEEEEEEEEecCCCee----EEEe--CCe--eeeee-------cCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 237 QALQYDMDLECHVEAYPPPAI----VWIK--EDT--QQVLT-------NNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~~~----~W~~--~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+.+|+.+.|.|.+.+.|.+.+ .|++ ++. .+... ...++.+.. ........|.|.++..+|+|
T Consensus 343 ~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~---~~~~g~~~L~I~~v~~~D~G 419 (585)
T 2ocw_A 343 GVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE---EPGNGTFTVILNQLTSRDAG 419 (585)
T ss_pred EEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEec---cCCCcEEEEEECCCChhhCE
Confidence 889999999999999999976 7999 776 31111 111221110 00112345999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEec----CCC---CCcccccceeeeccc------
Q psy8823 302 SYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFA----EQP---TSWEPQRKQLNCSSL------ 368 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~----~~p---~~W~~~~~~l~~~~~------ 368 (386)
.|+|.| |..|....++.|.|...|.....+....+..|+.++|.|.+. +.| ++|++||..+..+..
T Consensus 420 ~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~ 498 (585)
T 2ocw_A 420 FYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKA 498 (585)
T ss_pred EEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcc
Confidence 999999 999999999999998765544445667788999999999996 454 589999998765421
Q ss_pred ---------ceeeeeeeeecccccCC
Q psy8823 369 ---------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 369 ---------~~~~~i~~v~~~d~~~~ 385 (386)
...|.|..|.++|++.|
T Consensus 499 ~~~~~~~~~~~~L~i~~v~~~d~G~Y 524 (585)
T 2ocw_A 499 FVNCDENSRLVSLTLNLVTRADEGWY 524 (585)
T ss_pred eEEecCcccEEEEEECCCCcccCeEE
Confidence 13799999999999865
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=274.42 Aligned_cols=275 Identities=24% Similarity=0.404 Sum_probs=218.8
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.... ...+..... +.+|.|.++
T Consensus 121 p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-----------~~~~~~~~~-----~~~L~i~~~ 184 (403)
T 3laf_A 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIP-----------GDSRVVVLP-----SGALQISRL 184 (403)
T ss_dssp CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCT-----------TCCSEEECT-----TSCEEECSC
T ss_pred CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccC-----------CceEEEEcC-----CceEEEccc
Confidence 5566666677789999999999999988888999999887652100 011111111 127999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEecCCee-----ecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI-----SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-----~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
+.+|+|.|+|.+.+..+...+..+.+.|...|.. ....+....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 185 ~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~ 264 (403)
T 3laf_A 185 QPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQL 264 (403)
T ss_dssp CGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred ccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccC
Confidence 9999999999999876555556677777765532 12234556788999999999999999999999999988765
Q ss_pred CCceE--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCe
Q psy8823 179 TGGSI--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA 256 (386)
Q Consensus 179 ~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~ 256 (386)
..... ..+..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.
T Consensus 265 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~ 343 (403)
T 3laf_A 265 RSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT 343 (403)
T ss_dssp SSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCE
T ss_pred CCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCE
Confidence 43322 23568999999999999999999998776 6778899999999988888888889999999999999999999
Q ss_pred eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 257 IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 257 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
+.|++++.. +.....+... ..+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 344 v~W~~~g~~--~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P 402 (403)
T 3laf_A 344 VNWMKNGDV--VIPSDYFQIV--------GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402 (403)
T ss_dssp EEEEETTEE--CCCSSSEEEE--------TTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred EEEEECCEE--CCCCCcEEEe--------cCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence 999999987 4444443332 3567999999999999999999999999999999988654
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=283.14 Aligned_cols=283 Identities=16% Similarity=0.201 Sum_probs=204.6
Q ss_pred eeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEE
Q psy8823 35 IKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQ 114 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 114 (386)
....|+.+.|.|.+.|.|.+.|+|++++...... ..... .........++..|+|.|+|.
T Consensus 150 ~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~-----------~~~~~---------~~~~~~~~~~~~~d~G~Y~C~ 209 (527)
T 3qs9_E 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESC-----------KEESP---------AVVKKEEKVLHELFGTDIRCC 209 (527)
T ss_dssp EEECSSSSCEEEEEEESSCCEEEEEEC---------------------------------CEEECCSEECCCCSSCEEEE
T ss_pred EEecCCceEEEEEEceecCCeEEEEECCCCCccc-----------cccCC---------cEEEEeeeeccccCCEEEEEE
Confidence 4567888899999999999999999977543100 00000 011223334568999999999
Q ss_pred eEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCce----------E
Q psy8823 115 VIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGS----------I 183 (386)
Q Consensus 115 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~----------~ 183 (386)
+.|..+...+..+.|.|..+|.. .+....+.+|+.+.|.|.+. +.|.+.++|++++..+...... .
T Consensus 210 A~N~~G~~~~~~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~ 286 (527)
T 3qs9_E 210 ARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286 (527)
T ss_dssp EECSSCEEEEECEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEE
T ss_pred EEeCCCcccceEEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcce
Confidence 99877666555577888776655 34567889999999999996 8999999999999876543211 2
Q ss_pred EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCC--CcccccCCCcEEEEEEEEecCCCeeEEEe
Q psy8823 184 YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK--PRLGQALQYDMDLECHVEAYPPPAIVWIK 261 (386)
Q Consensus 184 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~~W~~ 261 (386)
.....|.|.+++.+|+|.|+|.+.|. ....+.|.|..+|.+...+ ....+.+|+.+.|.|.+.|+|.|.+.|++
T Consensus 287 ~~~~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k 362 (527)
T 3qs9_E 287 IRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF 362 (527)
T ss_dssp EEEEEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEE
T ss_pred eeEEEEEEccCCcccCeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEE
Confidence 23456999999999999999999987 4677888888888766543 24567889999999999999999999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCc
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLR 341 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~ 341 (386)
++.. +....+.. .....|.|.++..+|+|.|+|.|.|..|....++.|.|..+|..... ..
T Consensus 363 ~g~~--l~~~~~~~---------~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~~--------~~ 423 (527)
T 3qs9_E 363 SRKS--FPCEQKGL---------DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAE--------AS 423 (527)
T ss_dssp TTEE--EECBCCBC---------SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEEC--------CC
T ss_pred CCEE--CcCCcccc---------cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEEe--------CC
Confidence 9988 44333211 13567999999999999999999999999999999999866643221 12
Q ss_pred ceeeeEEecCCC---CCccccccee
Q psy8823 342 NVNMAVIFAEQP---TSWEPQRKQL 363 (386)
Q Consensus 342 ~~~~~c~~~~~p---~~W~~~~~~l 363 (386)
...|.|.+.|.| ++|++++...
T Consensus 424 ~~~l~C~a~g~P~p~i~W~~~~~~~ 448 (527)
T 3qs9_E 424 ASQASCFSDGYPLPSWTWKKCSDKS 448 (527)
T ss_dssp CE---EEEECSSCCEEEEECCC---
T ss_pred CCEEEEEEEEEcCCeEEEEECCCCc
Confidence 346899999998 6899876544
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=280.69 Aligned_cols=350 Identities=14% Similarity=0.218 Sum_probs=225.9
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCC----CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+...|....+.+|++++|.|.+.+.+. ..+.|++++.......+.............++.... ..+.++|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG--SRTDFTLTID 80 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE--ETTEEEEEES
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc--cCCcEEEEeC
Confidence 3555677788999999999999987665 479999975322111011100000001123444332 3456789999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcCeee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRENNAI 176 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~ 176 (386)
+++.+|+|.|+|.+.+..+......+.|.|.. +|.+....+.. ...+|+.++|.|.+.+ .|.+ .++|+++|..+
T Consensus 81 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~ 159 (438)
T 1qgc_4 81 PVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 159 (438)
T ss_dssp SCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred CCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCCh-hhccCCceEEEEEEccccCCCcEEEEEECCEEc
Confidence 99999999999999876543334455666653 44443322211 1235789999999977 5666 89999999887
Q ss_pred CCCC-----------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe--cceEeeCCCcccccCCCcE
Q psy8823 177 LPTG-----------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF--APVITVPKPRLGQALQYDM 243 (386)
Q Consensus 177 ~~~~-----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~ 243 (386)
.... ........|.|.++..+|+|.|+|.+.|..+.. .+.+.+.. .+.....+....+.+|+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v 236 (438)
T 1qgc_4 160 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLVKPGGSL 236 (438)
T ss_dssp CTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEECTTCCE
T ss_pred CCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC---ceecccccccceeEEecCCceEEecCCcE
Confidence 6541 111224579999999999999999999987652 22333321 2222233445668899999
Q ss_pred EEEEEEEecC--CCeeEEEeC--Ceeeeee---------------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 244 DLECHVEAYP--PPAIVWIKE--DTQQVLT---------------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 244 ~l~C~~~g~p--~~~~~W~~~--~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.|.+.|.| .+.+.|+++ +...... ...++..... .......|.|.+++.+|+|.|+
T Consensus 237 ~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~ 313 (438)
T 1qgc_4 237 KLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRD---NAKNTLYLQMSSLRSADTAMYY 313 (438)
T ss_dssp EEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCCEEE
T ss_pred EEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEee---cCCCeEEEEECCCChhhCEEEE
Confidence 9999999998 669999986 4331110 0122222110 1123568999999999999999
Q ss_pred EEEEcCCC-----ceeeEEEEEEEecCCCCCC----CCCceeecCcceeeeEEecCC-C----CCcccccceeeec----
Q psy8823 305 CRAANKLG-----TSEKTVELFESIIPVCPPQ----TQPSELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNCS---- 366 (386)
Q Consensus 305 C~a~n~~g-----~~~~~~~l~v~~~p~~~~~----~~~~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~~---- 366 (386)
|.|.|..+ .......|.|...+..+|. .+...+..|+.++|.|.+.|. | ++|++++..+...
T Consensus 314 C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~ 393 (438)
T 1qgc_4 314 CVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA 393 (438)
T ss_dssp EEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCC
T ss_pred EEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCc
Confidence 99999554 2224456666643322221 223446678999999999776 5 5899999886532
Q ss_pred ----ccce---eeeeeeeecccccCC
Q psy8823 367 ----SLLY---QCVLPLVDRQDRLMH 385 (386)
Q Consensus 367 ----~~~~---~~~i~~v~~~d~~~~ 385 (386)
+.+. .|.|+++..+| ..|
T Consensus 394 ~~~~g~~~~~s~L~i~~~~~~d-g~Y 418 (438)
T 1qgc_4 394 VLQSDLYTLSSSVTVPSSTWPS-ETV 418 (438)
T ss_dssp EEETTEEEEEEEEEEEEEHHHH-SCC
T ss_pred cccCCcEEEEEEEEEehhhcCC-ceE
Confidence 2221 58999998888 544
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=260.67 Aligned_cols=284 Identities=16% Similarity=0.254 Sum_probs=206.4
Q ss_pred eeccceeeecCCcEEEEEEEeeCCCC-----cEEEEecCCccccccccccCCceeEEeccceeeec---CCCcceEEEEE
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQDY-----PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRY---DTASSTYTLLV 100 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~~-----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i 100 (386)
..|....+..|++|+|.|.+.+.+.+ .|.|+|++......... ...........++.+.. ....++++|.|
T Consensus 5 ~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I 83 (313)
T 4fqp_A 5 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFH-QTQGPSYSESKRLEFVAARLGAELRNASLRM 83 (313)
T ss_dssp ECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEE-TTTEEEESSTTTEEESSCCTTSCCCBCCEEE
T ss_pred cCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEe-cCCCceeccCcceEEEeeccCCcccceEEEE
Confidence 34566668899999999999866543 38999988654211111 11111112223333322 22345678999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~ 179 (386)
.+++.+|+|.|+|.+.+...+..+..+.|.+..+|...... ....+..++.+.+.|.+ .+.|.+.+.|++++..+...
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~-~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~ 162 (313)
T 4fqp_A 84 FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV-QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162 (313)
T ss_dssp CSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEE-CCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE
T ss_pred CcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecc-cceEeecCceEEEEEEccCccCCcEEEeecCCcccccc
Confidence 99999999999999876656666777888888777655432 22345678888999987 57889999999998765432
Q ss_pred C-------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEecceEeeC-CCcccccCCCcEEEEEEEE
Q psy8823 180 G-------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEFAPVITVP-KPRLGQALQYDMDLECHVE 250 (386)
Q Consensus 180 ~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~ 250 (386)
. +.....+.|.|.+...+|+|.|+|.+.|..+. .....+.|.|.++|.+... .....+..|+.++|.|.+.
T Consensus 163 ~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~ 242 (313)
T 4fqp_A 163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242 (313)
T ss_dssp EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEE
T ss_pred ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEec
Confidence 1 11222456999999999999999999997654 2456678888889987654 3445566789999999999
Q ss_pred ecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 251 AYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 251 g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|+|.| .+.|++++.. +..... ..+..|.|.++..+|+|.|+|.|.|..|+.+.++.|.|.+.|+
T Consensus 243 g~P~p~~v~W~~~~~~--l~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP 307 (313)
T 4fqp_A 243 SNPEPTGYNWSTTMGP--LPPFAV-----------AQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPP 307 (313)
T ss_dssp EESCCCEEEEEETTBS--CCTTEE-----------EETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred CCCCCcEEEEEECCEE--CCCceE-----------EeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence 99999 6999999987 433221 1356799999999999999999999999999999999987653
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-37 Score=281.37 Aligned_cols=327 Identities=15% Similarity=0.190 Sum_probs=214.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCC--cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDY--PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.+.+.+....+.+|+.++|.|.+.+.+++ .|+|++++..+....... ......++.+. ....|.|
T Consensus 113 ~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~---~~~~~~~~~~~-------~~s~L~i 182 (523)
T 2rcj_C 113 ANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT---KPSKQSNNKYA-------ASSYLSL 182 (523)
T ss_pred cCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec---cccccCCCCEE-------EEEEEEE
Confidence 45667776666667789999999999976653 899999887653211000 00000111111 1237999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEE----EecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQ----VRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENN 174 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~ 174 (386)
.+++.+|+|.|+|.+.|..+.. ...+.+. +..+|.+....+ ...+.+|+.+.|.|.+.|. |.+ .++|++++.
T Consensus 183 ~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~-~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~ 260 (523)
T 2rcj_C 183 TPEQWKSHRSYSCQVTHEGSTV-EKTVAPTECSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPQPVTVSWNSGAL 260 (523)
T ss_pred echhcCCCceEEEEEEecCccc-ccceeeeecCCCCcCCEEEecCC-CcccccCCceEEEEEEeceeCCCeEEEEecCCc
Confidence 9999999999999999865432 2233322 223444442222 2345789999999999876 767 899999987
Q ss_pred eeCCC--------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEee-CCCccc-ccCCCcEE
Q psy8823 175 AILPT--------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLG-QALQYDMD 244 (386)
Q Consensus 175 ~~~~~--------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~-~~~g~~~~ 244 (386)
.+... .+.....+.|.|.++..+| |.|+|.|.|..+. ......+.+...|.+.. .+.... +.+|+.+.
T Consensus 261 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~-~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~ 338 (523)
T 2rcj_C 261 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN-TKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPE 338 (523)
T ss_pred ccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCC-cceEEecCCCcCceEEecCCCchhhcccCCceE
Confidence 64321 1112224589999999999 9999999998887 34455666656666543 332233 67899999
Q ss_pred EEEEEEecCC----CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 245 LECHVEAYPP----PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 245 l~C~~~g~p~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
|.|.+.|.|+ +.++|++++.. +...................+.|.|.++..+|+|.|+|.|.|..+.......+
T Consensus 339 l~C~~~g~~p~~~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 416 (523)
T 2rcj_C 339 VTCVVVDVSHEDPQVKFNWYVDGVQ--VHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTI 416 (523)
T ss_pred EEEEEecccCCCCceEEEEEECCeE--ccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEE
Confidence 9999998754 48999999988 43332211111111222245679999999999999999999998877655555
Q ss_pred EE----EecCCCCCCCCCceeecCcceeeeEEecCCC-----CCcccccceeee
Q psy8823 321 FE----SIIPVCPPQTQPSELLPLRNVNMAVIFAEQP-----TSWEPQRKQLNC 365 (386)
Q Consensus 321 ~v----~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p-----~~W~~~~~~l~~ 365 (386)
.+ ..+|.............++.++|.|.+.|.| ++|++||+.+..
T Consensus 417 ~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~ 470 (523)
T 2rcj_C 417 SKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN 470 (523)
T ss_pred EcccCCCCCCEEEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCC
Confidence 43 2222211111222223455699999997743 589999998864
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=255.94 Aligned_cols=268 Identities=16% Similarity=0.222 Sum_probs=203.9
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+....+.+|++++|.|.+.+ .+.|++++..+. ..... ..+|.|.
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~-----------~~~~~------------~~~L~i~ 62 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE-----------MVENK------------KNEWIQE 62 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC-----------EEEEC------------SSEEEET
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee-----------eecCC------------CceEEEe
Confidence 56788888888888999999999999875 899999886540 00000 0389999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC-CeEEEE-EcCeeeCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT-PRISWR-RENNAILPT 179 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~-~~~~~~~~~ 179 (386)
+++.+|+|.|+|.+.+ +. +..+.|.|..+|... .......+.+|+.+.|.|.+.+ |. +.++|+ +++..+...
T Consensus 63 ~~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~ 136 (290)
T 2o26_X 63 KAEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD 136 (290)
T ss_dssp TCCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCB-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT
T ss_pred ccCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCccc-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC
Confidence 9999999999999986 22 677888888877655 3455677889999999999986 77 899995 566665443
Q ss_pred CceEE-eeeEEEECCCCCCCCe-EEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecC
Q psy8823 180 GGSIY-RGSILKIPQITKEDRG-TYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYP 253 (386)
Q Consensus 180 ~~~~~-~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p 253 (386)
..... ....|.|.+++.+|+| .|+|.+.|..+...+..+.+.|. .+|.+...+....+.+|+.+.|.|.+.|.|
T Consensus 137 ~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p 216 (290)
T 2o26_X 137 LTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS 216 (290)
T ss_dssp CEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESS
T ss_pred CceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCC
Confidence 33222 2458999999999999 99999999855544556788876 678887777777889999999999999999
Q ss_pred CCe-eEEEeCCeee----eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 254 PPA-IVWIKEDTQQ----VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 254 ~~~-~~W~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.|. +.|++++... ......... ........+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|...|
T Consensus 217 ~p~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 217 TSVNSMWLKMNPQPQHIAQVKHNSWHR----GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp TTCEEEEEEESSSEEECCCEECCEEEE----ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred cceeEEEecCCCCCccceeeccccccc----CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 996 9999998772 222221111 11112246789999999999999999999999999999999887654
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=253.73 Aligned_cols=274 Identities=20% Similarity=0.227 Sum_probs=203.1
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|++++|.|.+.+ .+.|++++.... . ........+|.|.
T Consensus 2 ~p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~-------------------~--~~~~~~~~~L~i~ 56 (289)
T 3ejj_X 2 DPAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW-------------------T--LDPESPGSTLTTR 56 (289)
T ss_dssp --CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS-------------------E--ECCCSSCCEEEES
T ss_pred CCCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE-------------------E--EeccCCccEEEEe
Confidence 35677877778888999999999999875 499997664320 0 0111223489999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCe-EEEEEcCee-eCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPR-ISWRRENNA-ILPT 179 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~-~~~~ 179 (386)
+++.+|+|.|+|.+.+..+. .+..+.|.|..+|......+....+.+|+.+.|.|.+.+.+.+. +.|++.+.. +...
T Consensus 57 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~ 135 (289)
T 3ejj_X 57 NATFKNTGTYRCTELEDPMA-GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRK 135 (289)
T ss_dssp SCCGGGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTT
T ss_pred eeccccCEEEEEEEeccCCc-ceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCC
Confidence 99999999999998865443 47778888888776443344677899999999999998876665 999875444 4333
Q ss_pred CceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cC
Q psy8823 180 GGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YP 253 (386)
Q Consensus 180 ~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p 253 (386)
.... .....|.|.+++.+|+|.|+|.+.+......+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.+ .|
T Consensus 136 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p 215 (289)
T 3ejj_X 136 TVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEV 215 (289)
T ss_dssp CCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSS
T ss_pred ccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCC
Confidence 2222 2356799999999999999999995443335677888887 6777877777777789999999999998 78
Q ss_pred CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 254 PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 254 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.+.+.|++++.. +........ ........+.|.|.++..+|+|.|+|.|.|..|..++++.|.+...+
T Consensus 216 ~~~i~W~~~~~~--~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 216 GFNVILKRGDTK--LEIPLNSDF---QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp CCEEEEEETTEE--CCCCEEEEE---CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred ceEEEEEECCEE--eeccCCccc---ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 889999999987 433222111 12222347789999999999999999999999999999999886544
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=276.62 Aligned_cols=307 Identities=13% Similarity=0.144 Sum_probs=213.9
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCC---cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+...+.+..+.+|++++|.|.+.+.+.+ .|.|+|++..+.. ... .....+.+|.|.++
T Consensus 89 ~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~--------------~~~-----~~~~~~~~L~i~~~ 149 (450)
T 1z7z_I 89 VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR--------------EPA-----VGEPAEVTTTVLVR 149 (450)
T ss_dssp EEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE--------------EEC-----CTTTEEEEEEEECC
T ss_pred ceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeec--------------ccc-----cccccceEEEEEee
Confidence 3355566778999999999999987776 8999998765411 110 01233458999999
Q ss_pred CCCCCeEEEEEeEEcccce-------eeeEEEEEEecC----CeeecCCCceEEEeCCccEEEEEEeeee-C--CCeEEE
Q psy8823 104 QETDAGYYRCQVIIGINNK-------ISAEVDLQVRRP----PVISDNSTRSLVVSEGQPVQLECFAGGH-P--TPRISW 169 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~-------~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~--~~~v~W 169 (386)
+.+|+|.|+|.+.|..+.. .+....+.|... |.... ...+.+|+.+.|.|.+.+. | .+.++|
T Consensus 150 ~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~----~~~v~~G~~v~l~C~~~g~~P~~~~~~~W 225 (450)
T 1z7z_I 150 RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS----PRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225 (450)
T ss_dssp SSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC----CSEEETTSEEEEEEEEESCTTGGGCEEEE
T ss_pred ccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC----ceeEEeCCcEEEEEEeeCCCCCCceEEEE
Confidence 9999999999999864421 224455666543 22211 1468899999999999988 6 689999
Q ss_pred EEcCeeeCCCCceEEeeeEEEE---CCCCCCCCe--EEEEEEecCCCCceeeeEEEEEEe--cceEeeCCCcccccCCCc
Q psy8823 170 RRENNAILPTGGSIYRGSILKI---PQITKEDRG--TYYCVAENGVGKGTRRNIAVEVEF--APVITVPKPRLGQALQYD 242 (386)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~g--~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~ 242 (386)
++++..+... .......+.+ .+++.+|+| .|+|.+.|..+. ......|.|.. +|.+... ...+.+|+.
T Consensus 226 ~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~-~~~~~~l~V~~~~~p~i~~~--~~~v~~G~~ 300 (450)
T 1z7z_I 226 ALGDQRLNPT--VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVILT--KPEVSEGTE 300 (450)
T ss_dssp EETTEECCCE--EEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEE-EEEEEEEEEECCCCCEEEES--CSEEETTCE
T ss_pred eCCCEeCCce--EEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCcc-EEEEEEEEEecCCCCeEecC--CeeEeCCCc
Confidence 9999887552 2222212222 277899999 999999998776 45577777776 4555433 447889999
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC----ceeeEE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG----TSEKTV 318 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~ 318 (386)
++|.|.+. |.|.++| +|.. +... .....|.|.++..+|+|.|+|.|.|..+ ....++
T Consensus 301 v~l~C~~~--p~p~i~W--~g~~--~~~~-------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~ 361 (450)
T 1z7z_I 301 VTVKCEAH--PRAKVTL--NGVP--AQPL-------------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR 361 (450)
T ss_dssp EEEEEEC-----------------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEecC--CCCEeEE--CCEE--cCCC-------------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeE
Confidence 99999997 8889999 6655 2110 0234799999999999999999998765 445778
Q ss_pred EEEEEecCCCCCCC--CCceeecCcceeeeEEecCCC---CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 319 ELFESIIPVCPPQT--QPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 319 ~l~v~~~p~~~~~~--~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
.|.|..+|...... ....+..|+.++|.|.+.|.| ++|++++..+..++... .|+++|++.|
T Consensus 362 ~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~~~-----~v~~~d~G~Y 428 (450)
T 1z7z_I 362 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESV-----TVTRDLEGTY 428 (450)
T ss_dssp ECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCE-----ECCGGGCEEE
T ss_pred EEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCCeE-----eEehhhCeEE
Confidence 88888888765554 334788899999999998888 79999999766655432 6888888765
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=272.62 Aligned_cols=315 Identities=12% Similarity=0.088 Sum_probs=220.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcE-----EEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPV-----IWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
|.+.|....+.+|++++|.|.+.+ +.+.+ .|+|++.... + .....|.|.
T Consensus 2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~---------------~----------~~~~~l~i~ 55 (450)
T 1z7z_I 2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLP---------------G----------NNRKVYELS 55 (450)
T ss_dssp CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSS---------------T----------TTEEEEEEE
T ss_pred cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEec---------------C----------CCceEEEEE
Confidence 567788888999999999999998 77777 8988764220 1 112279999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC---eEEEEEcCeeeCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP---RISWRRENNAILP 178 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~ 178 (386)
+++. |+| |+|.+.+. +...+..+.|.|..+|......+....+.+|+.+.|.|.+.+.+++ .++|+|++..+..
T Consensus 56 ~v~~-d~g-Y~C~a~~~-~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~ 132 (450)
T 1z7z_I 56 NVQE-DSQ-PMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR 132 (450)
T ss_dssp EECS-CBC-CEEEEEET-TEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred eccc-CCe-eEEEEeCC-CCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeec
Confidence 9987 999 99999643 4455777888888888666444455678899999999999998887 8999999987753
Q ss_pred CCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCce-------eeeEEEEEEec----ceEeeCCCcccccCCCcEEEE
Q psy8823 179 TGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGT-------RRNIAVEVEFA----PVITVPKPRLGQALQYDMDLE 246 (386)
Q Consensus 179 ~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-------~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~ 246 (386)
.... ......|.|.++..+|+|.|+|.+.|..+... +....+.|... |.+.. ...+.+|+.+.|.
T Consensus 133 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~ 209 (450)
T 1z7z_I 133 EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVV 209 (450)
T ss_dssp EECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEE
T ss_pred ccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEE
Confidence 3211 11245899999999999999999999765321 13344444432 22221 1567889999999
Q ss_pred EEEEec-C--CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe--EEEEEEEcCCCceeeEEEEE
Q psy8823 247 CHVEAY-P--PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG--SYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 247 C~~~g~-p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G--~Y~C~a~n~~g~~~~~~~l~ 321 (386)
|.+.|. | .+.+.|++++.. +.. ..... .......+.+ ++..+|+| .|+|.|.|..|..+.++.|.
T Consensus 210 C~~~g~~P~~~~~~~W~~~~~~--~~~--~~~~~-----~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~ 279 (450)
T 1z7z_I 210 CSLDGLFPVSEAQVHLALGDQR--LNP--TVTYG-----NDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVT 279 (450)
T ss_dssp EEEESCTTGGGCEEEEEETTEE--CCC--EEEEE-----TTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEeeCCCCCCceEEEEeCCCEe--CCc--eEEec-----CCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEE
Confidence 999998 6 679999999987 333 11111 1111112222 77899999 99999999999999999998
Q ss_pred EEecCCCCCCCCCceeecCcceeeeEEecCCC-CCcccccceeeecccceeeeeeeeecccccCC
Q psy8823 322 ESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP-TSWEPQRKQLNCSSLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 322 v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p-~~W~~~~~~l~~~~~~~~~~i~~v~~~d~~~~ 385 (386)
|...|.+.-......+..|+.++|.|.+.+.| ++| +|..+...+....|.|..+..+|+..|
T Consensus 280 V~~~~~p~i~~~~~~v~~G~~v~l~C~~~p~p~i~W--~g~~~~~~~~~~~L~i~~~~~~d~G~Y 342 (450)
T 1z7z_I 280 IYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSF 342 (450)
T ss_dssp EECCCCCEEEESCSEEETTCEEEEEEEC------------------CCCCCEEEECCGGGTTCEE
T ss_pred EecCCCCeEecCCeeEeCCCcEEEEEecCCCCEeEE--CCEEcCCCCceEEEEEecCcccCCceE
Confidence 88755422233456788999999999998555 799 888884444444899999999999765
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=273.01 Aligned_cols=330 Identities=17% Similarity=0.255 Sum_probs=208.7
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-CCceeE---EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-TGSSLI---IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++|+|.|.+.+.+ ...+.|+|+........+ ... .+.... ...+|+.+..+...++++|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR 85 (444)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence 45667799999999999998654 567999997532211111 111 011000 01346665544455678999999
Q ss_pred cCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCe
Q psy8823 103 IQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENN 174 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~ 174 (386)
++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.|. |.+ .++|++++.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~ 164 (444)
T 1igt_B 86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 164 (444)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCS-SCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccc-cCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence 9999999999999875433 223445677763 34333211111 23689999999999885 665 999999887
Q ss_pred eeCCC-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE------------------EecceEe
Q psy8823 175 AILPT-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV------------------EFAPVIT 229 (386)
Q Consensus 175 ~~~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~ 229 (386)
.+... .........|.|.++..+| |.|+|.+.|..+.. .....+.+ ..+|.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~ 242 (444)
T 1igt_B 165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVF 242 (444)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEE
T ss_pred CCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEE
Confidence 53100 0122234679999999999 99999999988762 22222221 2245543
Q ss_pred eCCCccc--ccCCCcEEEEEEEEecC---C-CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 230 VPKPRLG--QALQYDMDLECHVEAYP---P-PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 230 ~~~~~~~--~~~g~~~~l~C~~~g~p---~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
..++... +.+|+.++|.|.+.|.+ + +.+.|++++.. +...................+.|.|.++..+|+|.|
T Consensus 243 ~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y 320 (444)
T 1igt_B 243 IFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVE--VHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF 320 (444)
T ss_dssp EECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEE--CSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEE
T ss_pred ecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCcc--ccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcE
Confidence 3333333 58899999999999984 3 58999999977 332221111111112223467899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEE----EecCCCCCCCCCceeecCcceeeeEEecC-CC----CCcccccceee
Q psy8823 304 ICRAANKLGTSEKTVELFE----SIIPVCPPQTQPSELLPLRNVNMAVIFAE-QP----TSWEPQRKQLN 364 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v----~~~p~~~~~~~~~~~~~~~~~~~~c~~~~-~p----~~W~~~~~~l~ 364 (386)
+|.|.|..|.......+.+ ...|.............++.++|.|.+.| .| ++|++||..+.
T Consensus 321 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~ 390 (444)
T 1igt_B 321 KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTEL 390 (444)
T ss_dssp EEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred EEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEEcc
Confidence 9999999987743333321 12221111111122223445999999976 33 58999999874
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=257.60 Aligned_cols=290 Identities=18% Similarity=0.300 Sum_probs=207.8
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC----CCCcEEEEecCCccccccccccCCceeEE---eccceeeecCCCcceEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA----QDYPVIWMKVDRNKVTEPLPISTGSSLII---RDSRFAIRYDTASSTYT 97 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 97 (386)
+.+...+....+.+|++++|.|.+.+. +...+.|++++.................. ..+++.+. .....+++
T Consensus 15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~ 93 (331)
T 3u83_A 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDGT 93 (331)
T ss_dssp ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES-SCSSSBCC
T ss_pred cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec-ccCCCCce
Confidence 334444566779999999999998865 34469999965432211111111111111 12344443 23445668
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeec-CCCceEEEeCC---ccEEEEEE-eeeeCCCeEEEEEc
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD-NSTRSLVVSEG---QPVQLECF-AGGHPTPRISWRRE 172 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~~g---~~v~l~C~-~~~~~~~~v~W~~~ 172 (386)
|.|.+++.+|+|.|+|.+.+...+..+..+.|.|..+|.+.. .......+.+| +.++|.|. ..+.|.+.+.|+++
T Consensus 94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~ 173 (331)
T 3u83_A 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR 173 (331)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence 999999999999999997655455667788899998886533 23455678888 77999998 78899999999996
Q ss_pred CeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEee-CCCcccccCCCcEEE
Q psy8823 173 NNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITV-PKPRLGQALQYDMDL 245 (386)
Q Consensus 173 ~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l 245 (386)
+.... ...........|.|.++..+|+|.|+|.+.|..+. .+..+.|.|.++|.+.. ......+.+|+.+.|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l 252 (331)
T 3u83_A 174 LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKL 252 (331)
T ss_dssp SCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEE-EEEEEECCEEEEEEEEEECCCSCCBTTCCCEEE
T ss_pred CCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCc-ceeeEEEEEecCCeEEEecCCCceEeCCCeEEE
Confidence 33221 11222333567999999999999999999998776 66788899998888764 344556788999999
Q ss_pred EEEEEecCCCe-eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe-ecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 246 ECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI-TIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 246 ~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.|.+.|+|.|. +.|++++.. +...... ....|.|. ++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 253 ~C~~~g~p~p~~i~W~~~~~~--~~~~~~~-----------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 319 (331)
T 3u83_A 253 TCKADANPPATEYHWTTLNGS--LPKGVEA-----------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319 (331)
T ss_dssp EEEEEEESCCCEEEEEETTBS--CCTTEEE-----------ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred EEeCcCCCCCCEEEEEECCCc--cccccee-----------cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence 99999999997 999999987 4333211 35679999 899999999999999999999999999998
Q ss_pred ecCCCC
Q psy8823 324 IIPVCP 329 (386)
Q Consensus 324 ~~p~~~ 329 (386)
..+...
T Consensus 320 ~~~~~~ 325 (331)
T 3u83_A 320 EAAALE 325 (331)
T ss_dssp C-----
T ss_pred ccchhh
Confidence 776543
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=261.20 Aligned_cols=261 Identities=26% Similarity=0.426 Sum_probs=197.6
Q ss_pred ceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 33 EQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
...+.+|+.+.|.|... +.+.+.+.|++++.... .+.+..... .+.+|.|.+++.+|+|.|
T Consensus 111 ~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~--------------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y 172 (384)
T 3kld_A 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--------------QDNRRFVSQ----ETGNLYIAKVEKSDVGNY 172 (384)
T ss_dssp CEEEEETCCEEECCCCCSEESCEEEEEEETTEECC--------------CSSSEEECT----TTCCEEESSCCGGGCEEE
T ss_pred ceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE--------------eeccEEEEc----CCCcEEEeecCHHHCceE
Confidence 35688999999999754 34567899999875431 111111111 123799999999999999
Q ss_pred EEEeEEccccee--eeEEEEEEe-------cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe-eeCCCCc
Q psy8823 112 RCQVIIGINNKI--SAEVDLQVR-------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN-AILPTGG 181 (386)
Q Consensus 112 ~C~~~~~~~~~~--~~~~~l~v~-------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~ 181 (386)
+|.+.|..+... .....+.+. ..|.+....+....+.+|+.+.|.|.+.|.|.+.+.|++++. .+.....
T Consensus 173 ~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~ 252 (384)
T 3kld_A 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR 252 (384)
T ss_dssp EEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE
T ss_pred EEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce
Confidence 999998654321 111222221 123333333456678899999999999999999999999654 3332222
Q ss_pred eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEe
Q psy8823 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIK 261 (386)
Q Consensus 182 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~ 261 (386)
....+..|.|.+++.+|+|.|+|.+.|..+. ......|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++
T Consensus 253 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k 331 (384)
T 3kld_A 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK 331 (384)
T ss_dssp ECTTSCEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEE
T ss_pred ecCCCcEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEE
Confidence 2223568999999999999999999999887 556778889999988877777888999999999999999999999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
++.. +....++.. ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 332 ~g~~--l~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 332 NGDP--LLTRDRIQI---------EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp TTEE--CCCBTTEEE---------ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEE--CCCCccEEE---------eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 9988 544444432 24589999999999999999999999999999999885
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=258.30 Aligned_cols=283 Identities=20% Similarity=0.297 Sum_probs=203.4
Q ss_pred cceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEe---ccceeeecCCCcceEEEEEcccCCCC
Q psy8823 32 QEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+...+.+|++++|.|.+.+. +...|+|+|++................... ..|+.. .+...++++|.|.+++.+|
T Consensus 7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~sL~I~~v~~~D 85 (308)
T 4fom_A 7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLF-KNYSLNDATITLHNIGFSD 85 (308)
T ss_dssp CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEE-SCCSSSBCCEEECSCCGGG
T ss_pred CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEe-eccCCCceEEEEccCCHHH
Confidence 45668899999999998644 445699999776543221111111111111 112222 1223455689999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEecCCeeec-CCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCc----
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVRRPPVISD-NSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG---- 181 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~---- 181 (386)
+|.|+|.+.+...+..+..+.+.+...|.... ..+.......|+.+.|.|.+ .|.|.+.++|++++..+.....
T Consensus 86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~ 165 (308)
T 4fom_A 86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN 165 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence 99999999987666667777788777664432 22333345568899999986 6889999999999877643221
Q ss_pred -eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEecceEeeCC-CcccccCCCcEEEEEEEEecCCC-ee
Q psy8823 182 -SIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEFAPVITVPK-PRLGQALQYDMDLECHVEAYPPP-AI 257 (386)
Q Consensus 182 -~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~-~~ 257 (386)
.....+.|.|.++..+|+|.|+|.+.|..+.. ....+.|.|..+|.+...+ ....+..|+.++|.|.+.|+|+| .+
T Consensus 166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v 245 (308)
T 4fom_A 166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS 245 (308)
T ss_dssp SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence 22234579999999999999999999976543 4556778888888876544 34456678999999999999998 69
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
.|++++.. +...... .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|.
T Consensus 246 ~W~k~~~~--~~~~~~~----------~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 246 VWSRLDGQ--WPDGLLA----------SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp ECCBSSSC--CCSSCBC----------STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred EEEECCeE--CCCcEEE----------cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 99999877 4332111 1345577889999999999999999999999999999988774
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=255.93 Aligned_cols=277 Identities=19% Similarity=0.204 Sum_probs=202.8
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
++.+|.|...+....+.+|++++|.|.+.+. +.|++++... .. ........+|.|
T Consensus 1 a~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~-------------------~~--~~~~~~~~~L~i 55 (292)
T 4dkd_C 1 AGSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPH-------------------WT--LYSDGSSSILST 55 (292)
T ss_dssp ---CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSS-------------------CE--ECCBTTEEEEEE
T ss_pred CCCCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCc-------------------eE--EeccCceEEEEE
Confidence 3568899998888899999999999998753 8999754321 11 111223558999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCeeeCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNAILP 178 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~ 178 (386)
.+++.+|+|.|+|.+.+..+.. +..+.|.|..+|......+....+.+|+.++|.|.+.+ +. +.+.|++++.....
T Consensus 56 ~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~ 133 (292)
T 4dkd_C 56 NNATFQNTGTYRCTEPGDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLM 133 (292)
T ss_dssp SSCCGGGCSCEEECCCC----C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCC
T ss_pred cccccccCEEEEEEEccCCCCc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccc
Confidence 9999999999999998754433 77888888887764443455678899999999999987 44 68999998544333
Q ss_pred CCc-eE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec
Q psy8823 179 TGG-SI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY 252 (386)
Q Consensus 179 ~~~-~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~ 252 (386)
... .. .....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.
T Consensus 134 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~ 213 (292)
T 4dkd_C 134 RHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSV 213 (292)
T ss_dssp SSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEES
T ss_pred cCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCC
Confidence 322 21 22445999999999999999999988776556688899987 8888877777777899999999999987
Q ss_pred CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 253 PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 253 p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
|++ .+.|++++..........+. .......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|.......
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~ 286 (292)
T 4dkd_C 214 DVNFDVFLQHNNTKLAIPQQSDFH-----NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS 286 (292)
T ss_dssp SSCCEEECCBSSCCCCCCBEEEEE-----TTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred CCceEEEEeCCCcccccCccceec-----cceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence 764 68888888763222221111 1112245789999999999999999999999999999999998766543
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=259.37 Aligned_cols=266 Identities=18% Similarity=0.309 Sum_probs=202.6
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
|.+...+....+.+|+.++|.|.+.+.+. +.+.|++++..+.... ...+.++....+ .+|.|.
T Consensus 104 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~---------~~~~~~~~~~~~-----~~L~i~ 169 (388)
T 2v5m_A 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPG---------AEYDGKYLVLPS-----GELHIR 169 (388)
T ss_dssp CCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSS---------SCBTTTEEECTT-----SCEEES
T ss_pred cccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccc---------cCCCCcEEEccC-----CcEEEe
Confidence 34444456667899999999999986543 6799999886542110 001223333222 279999
Q ss_pred ccCCCCC-eEEEEEeEEcccceeee---EEEEEEecC-----CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc
Q psy8823 102 DIQETDA-GYYRCQVIIGINNKISA---EVDLQVRRP-----PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE 172 (386)
Q Consensus 102 ~~~~~d~-G~Y~C~~~~~~~~~~~~---~~~l~v~~~-----p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~ 172 (386)
+++.+|+ |.|+|.+.+..+..... ...|.|..+ |...........+.+|+.++|.|.+.|.|.+.+.|+++
T Consensus 170 ~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~ 249 (388)
T 2v5m_A 170 EVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF 249 (388)
T ss_dssp SCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEE
T ss_pred cCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEec
Confidence 9999999 99999999865433221 234566554 22222223445688999999999999999999999998
Q ss_pred CeeeC------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEE
Q psy8823 173 NNAIL------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLE 246 (386)
Q Consensus 173 ~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~ 246 (386)
+.... ...........|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+...+....+.+|+.+.|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~ 328 (388)
T 2v5m_A 250 IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328 (388)
T ss_dssp CTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEEESSEEEECTTSCEEEE
T ss_pred CCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCc-eeEEEEEEEeCCCccccCCCcEEecCCCCEEEE
Confidence 54321 12223344678999999999999999999999887 567888999998888777777788899999999
Q ss_pred EEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 247 CHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 247 C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|.+.|+|.|.+.|++++.. +.. ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 329 C~~~g~p~p~i~W~~~g~~--i~~---------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 329 CQYTGNPIKTVSWMKDGKA--IGH---------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEEEEECCCEEEEEETTEE--CSC---------------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEeccccCCeEEEEECCEE--Ccc---------------CCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 9999999999999999987 322 2467999999999999999999999999999999876
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=258.19 Aligned_cols=262 Identities=24% Similarity=0.368 Sum_probs=203.7
Q ss_pred cceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|++++|.|.+. +.+.+.+.|++++..... . .+.+..... .+.+|.|.+++.+|+|.
T Consensus 109 ~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~-----~-------~~~~~~~~~----~~~~L~i~~~~~~d~G~ 172 (382)
T 1cs6_A 109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFI-----P-------ADGRRFVSQ----TTGNLYIAKTEASDLGN 172 (382)
T ss_dssp CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBC-----C-------CCSSEEECT----TTCCEEESSCCGGGCEE
T ss_pred CceEEecCCcEEEEeCCCCCCCCcEEEEEECCCcccc-----c-------cCceEEEec----CceEEEEEeeCcccCee
Confidence 455688999999999854 557788999998765310 0 111111111 12379999999999999
Q ss_pred EEEEeEEcccce----eeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC
Q psy8823 111 YRCQVIIGINNK----ISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 111 Y~C~~~~~~~~~----~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~ 180 (386)
|+|.+.+..+.. .+..+.|.+.. +|.+....+....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 173 Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-- 250 (382)
T 1cs6_A 173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-- 250 (382)
T ss_dssp EEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--
T ss_pred EEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc--
Confidence 999998765321 12334455432 344444445567889999999999999999999999998877543
Q ss_pred ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEE
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI 260 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~ 260 (386)
........|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus 251 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~ 329 (382)
T 1cs6_A 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 329 (382)
T ss_dssp CCSBSSSEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred EEecCCcEEEEccCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEE
Confidence 22234568999999999999999999998877 66788999999998887777788889999999999999999999999
Q ss_pred eCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 261 KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
+++.. +....++.. ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 330 ~~g~~--~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 330 RDGQP--LASQNRIEV---------SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp ETTEE--CCCCSSEEE---------ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ECCEE--CCCCceEEE---------ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 99988 544444433 24579999999999999999999999999999999875
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=254.19 Aligned_cols=287 Identities=14% Similarity=0.210 Sum_probs=185.4
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecC---CCcceEEEEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD---TASSTYTLLV 100 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i 100 (386)
..|...+....+.+|++++|.|.+.+. |.+.|.|++++...... +....+. ...++....+ ....+++|.|
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~-i~~~~~~----~~~r~~~~~~~~~~~~~~~~L~I 78 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPAREL-IYNQKEG----HFPRVTTVSESTKRENMDFSISI 78 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEE-EEETTSS----CCTTEEECC---CTTCCBCCEEE
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceE-EEEcCCC----CcceeeeecccccccCceeEEEE
Confidence 446666778889999999999999876 77889999987543111 0000000 0113322211 1144568999
Q ss_pred cccCCCCCeEEEEEeEEcccce----eeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEEEEcCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNK----ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENN 174 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~ 174 (386)
.+++.+|+|.|+|.+.+..+.. .+..+.|.|..+|..+........+.+|+.+.|.|.+.+.|++ .++|++++.
T Consensus 79 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~ 158 (327)
T 2wng_A 79 SNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGN 158 (327)
T ss_dssp CSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCE
Confidence 9999999999999999865431 2345678887665332111122457889999999999988766 899999998
Q ss_pred eeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc--eeeeEEE--EEEecceEeeCCCcccccCCC
Q psy8823 175 AILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKG--TRRNIAV--EVEFAPVITVPKPRLGQALQY 241 (386)
Q Consensus 175 ~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~--~~~~~~l--~v~~~p~~~~~~~~~~~~~g~ 241 (386)
.+..... .......|.|.....+|.|.|+|.+.|..+.. ......+ .+..+|.+...+.. +.+|+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~ 236 (327)
T 2wng_A 159 ELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAEN 236 (327)
T ss_dssp ECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTT
T ss_pred EccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCC
Confidence 8754331 12224468888877777899999999977652 2223333 45667776654433 67899
Q ss_pred cEEEEEEEEecC-CC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eEE
Q psy8823 242 DMDLECHVEAYP-PP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KTV 318 (386)
Q Consensus 242 ~~~l~C~~~g~p-~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~ 318 (386)
.+.|.|.+.|.| ++ .+.|+++|..+... .........+........|.|.++..+|+|.|+|.|.|..|... +++
T Consensus 237 ~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~--~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~ 314 (327)
T 2wng_A 237 QVNVTCQVRKFYPQRLQLTWLENGNVSRTE--TASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSH 314 (327)
T ss_dssp CCEEEEEEEEEBSSCEEEEEEETTEEEEEE--ECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEE
T ss_pred cEEEEEEEccccCCCcEEEEEECCeEccCc--ccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhhe
Confidence 999999999954 44 89999999883322 11111111111122346789999999999999999999998654 344
Q ss_pred EE
Q psy8823 319 EL 320 (386)
Q Consensus 319 ~l 320 (386)
.+
T Consensus 315 ~~ 316 (327)
T 2wng_A 315 DL 316 (327)
T ss_dssp EC
T ss_pred EE
Confidence 43
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=257.61 Aligned_cols=273 Identities=16% Similarity=0.244 Sum_probs=195.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+|.|.. +.+..+.+|++++|.|.+.+. +.+.+.|++++..+.. +.++... .++.+|.|.
T Consensus 6 ~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~--------------~~~~~~~----~~~~~L~i~ 66 (317)
T 2y25_A 6 TGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV--------------DEKHDFK----DGICTLLIT 66 (317)
T ss_dssp SCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECC--------------SCC---------CCEEEEET
T ss_pred CCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCC--------------CCcEEEE----CCeEEEEEc
Confidence 4677764 456779999999999999876 6788999998765421 1122221 334699999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee----------eCCCeEEEEE
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG----------HPTPRISWRR 171 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~----------~~~~~v~W~~ 171 (386)
+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+... .....+.+|+.+.|.|.+.+ .|.+.+.|++
T Consensus 67 ~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~ 144 (317)
T 2y25_A 67 EFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMME-VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH 144 (317)
T ss_dssp TCCSTTCSCEEEEEESSSCE-EEEEECCSTHHHHHHHHH-HHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEE
T ss_pred cCCcccCeEEEEEEECCCCc-EEEEEEEEEecCcccccc-CCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEE
Confidence 99999999999999876443 344455555443322111 11122445666667776655 6888999999
Q ss_pred cCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe--------------------cce
Q psy8823 172 ENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF--------------------APV 227 (386)
Q Consensus 172 ~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~--------------------~p~ 227 (386)
++..+......... ...|.|.+++.+|+|.|+|.+.|..+. ....+.+.+.. .|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~ 223 (317)
T 2y25_A 145 NGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR 223 (317)
T ss_dssp SSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCE
T ss_pred CCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCce-EEEEEEEeeeeccccchhhcccCCcccCcCCCCc
Confidence 99888665443322 245999999999999999999998776 44555555431 233
Q ss_pred Eee-CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 228 ITV-PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 228 ~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
+.. .+....+.+|+.+.|.|.+.|+|.|.+.|++++.. +....++.+... ......|.|.++..+|+|.|+|.
T Consensus 224 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~ 297 (317)
T 2y25_A 224 VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LASDDHCNLKFE----AGRTAYFTINGVSTADSGKYGLV 297 (317)
T ss_dssp EEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSE--ECCCSSEEECCB----TTTEEEEEEBSCCSTTCEEEEEE
T ss_pred ccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEe--CCCCCcEEEEEc----CCCEEEEEECCCCHHHCEEEEEE
Confidence 333 34456788999999999999999999999999988 555554443211 01346899999999999999999
Q ss_pred EEcCCCceeeEEEEEEE
Q psy8823 307 AANKLGTSEKTVELFES 323 (386)
Q Consensus 307 a~n~~g~~~~~~~l~v~ 323 (386)
|.|..|..+.++.|.|.
T Consensus 298 a~N~~g~~~~~~~l~V~ 314 (317)
T 2y25_A 298 VKNKYGSETSDFTVSVF 314 (317)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEeCCCeEEEEEEEEEE
Confidence 99999999999999886
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=261.28 Aligned_cols=334 Identities=16% Similarity=0.212 Sum_probs=210.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCce---eEEeccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGSS---LIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~---~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
....+....+.+|++|+|.|.+.+.+ ...+.|||+........+. .. .+.. .....+|+....+...++++|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (475)
T 1iga_A 4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG 83 (475)
T ss_pred eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence 34456777899999999999998654 5679999975322111111 00 0100 0112356666555455678999
Q ss_pred EcccCCCCCeEEEEEeEEcccc-----eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC-C-eE
Q psy8823 100 VKDIQETDAGYYRCQVIIGINN-----KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-P-RI 167 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~-~v 167 (386)
|.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+...... .+.+|+.++|.|.+.|. |. + .+
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~g~~v~L~C~~~g~~P~~p~~v 161 (475)
T 1iga_A 84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC--STQPDGNVVIACLVQGFFPQEPLSV 161 (475)
T ss_pred ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc--ccCCCCeEEEEEEEeeecCCCceEE
Confidence 9999999999999999875431 123445677763 3433322221 23689999999999887 54 4 89
Q ss_pred EEEEcCeeeCC---------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE---------------
Q psy8823 168 SWRRENNAILP---------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE--------------- 223 (386)
Q Consensus 168 ~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~--------------- 223 (386)
+|++++..... .++.......|.|.++..+|+|.|+|.+.|..+......+.+.|.
T Consensus 162 ~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~ 241 (475)
T 1iga_A 162 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPS 241 (475)
T ss_pred EEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCC
Confidence 99998743210 111222345689999999999999999999876433444444331
Q ss_pred ---ecceEeeCCC-cccccCCCcEEEEEEEEecCC---CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc
Q psy8823 224 ---FAPVITVPKP-RLGQALQYDMDLECHVEAYPP---PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 224 ---~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.+|.+...++ ...+.+|+.+.|.|.+.|.++ +.+.| ++.. +...................+.|.|.++.
T Consensus 242 ~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~--~~~~~~~~~~~~~~g~~~~~~~L~I~~~~ 317 (475)
T 1iga_A 242 PSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSS--GKSAVQGPPERDLCGCYSVSSVLPGCAEP 317 (475)
T ss_pred CCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCC--cCCccccCceECCCCCEEEEEEEEEchHH
Confidence 2344423222 233578999999999998754 58999 4433 11111111111111112246789999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEE---ecCCCCCCCCC-ceeecCcceeeeEEecCC-C----CCcccccceeeec
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFES---IIPVCPPQTQP-SELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNCS 366 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~---~~p~~~~~~~~-~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~~ 366 (386)
.+|+|.|+|.|.|..|.......|.+. ..|........ ..+..|+.++|.|.+.+. | ++|++||+.+..+
T Consensus 318 ~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~ 396 (475)
T 1iga_A 318 WNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE 396 (475)
T ss_pred hccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence 999999999999999986555555331 22221111111 235567789999999774 3 6899999988654
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=256.87 Aligned_cols=266 Identities=23% Similarity=0.375 Sum_probs=203.7
Q ss_pred cceeeecCCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC-Ce
Q psy8823 32 QEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD-AG 109 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-~G 109 (386)
.+..+.+|++++|.|.+ .+.+.+.+.|++++..... .+.++.... +++|.|.+++.+| +|
T Consensus 124 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~-------------~~~~~~~~~-----~~~l~i~~v~~~d~~G 185 (404)
T 3p3y_A 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT-------------QDKRVSQGH-----NGDLYFSNVMLQDMQT 185 (404)
T ss_dssp CCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCC-------------CCSSEEECT-----TSCEEESSCCSGGGSS
T ss_pred CCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccC-------------CCCcEEEcC-----CCcEEEEeeeeccCCc
Confidence 44668899999999998 6778889999998643311 112222211 2269999999999 59
Q ss_pred EEEEEeEEccccee--eeEEEEEEecC-------CeeecC--CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 110 YYRCQVIIGINNKI--SAEVDLQVRRP-------PVISDN--STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 110 ~Y~C~~~~~~~~~~--~~~~~l~v~~~-------p~~~~~--~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
.|+|.+.+..+... ...+.+.+... |.+... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 186 ~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~ 265 (404)
T 3p3y_A 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS 265 (404)
T ss_dssp CBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCT
T ss_pred ceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCC
Confidence 99999997655432 33355555432 222211 12345688999999999999999999999999988765
Q ss_pred CCceEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 179 TGGSIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 179 ~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
...... .+..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|+|.|.+
T Consensus 266 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v 344 (404)
T 3p3y_A 266 DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV 344 (404)
T ss_dssp TTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEE
T ss_pred CcccccccCceEEEccCCHhHCEEEEEEEEeCCCc-EEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCce
Confidence 543322 3568999999999999999999999887 67789999999998888888888899999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.|++++.. +........ ....+..|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 345 ~W~~~g~~--~~~~~~~~~------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 345 QWMVNGEP--LQSAPPNPN------REVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp EEEETTEE--GGGSCCCTT------EEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEEECCEe--cCCCCCCce------EEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999987 433221000 001345899999999999999999999999999999998854
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=250.56 Aligned_cols=267 Identities=18% Similarity=0.252 Sum_probs=194.2
Q ss_pred ccceeeecCCcEEEEEEEeeC---------CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA---------QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.....+.+|+++.|.|.+.+. +.+.+.|+|++..... ..+. . .+.+|.|.
T Consensus 36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~--------------~~~~-~------~~~~L~i~ 94 (329)
T 3oq3_B 36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP--------------LNRR-V------KNGDLWIA 94 (329)
T ss_dssp EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEE--------------CSTT-E------ETTEEEES
T ss_pred cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccc--------------cCce-e------ecceEEEc
Confidence 356679999999999998864 4578999998875421 1111 1 12389999
Q ss_pred ccCCCCCe-EEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeC-CCeEEEEEcCeeeCCC
Q psy8823 102 DIQETDAG-YYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILPT 179 (386)
Q Consensus 102 ~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~ 179 (386)
+++.+|+| .|+|.+.+..+......+.+.+..+|..... .....+.+|+.+.|.|.+.+.| .+.+.|++++..+...
T Consensus 95 ~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~-~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~ 173 (329)
T 3oq3_B 95 NYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE-TYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID 173 (329)
T ss_dssp SCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEE-EEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCS
T ss_pred CCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEecc-ccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCC
Confidence 99999999 9999999866543333333444445443221 1122255799999999999999 8999999999988533
Q ss_pred Cc-eEEeeeEEEECCCCCCCCeEEEEEEecC--CCC---ceeeeEEEEEEecc----eEeeCCCcccccCCCcEEEEEEE
Q psy8823 180 GG-SIYRGSILKIPQITKEDRGTYYCVAENG--VGK---GTRRNIAVEVEFAP----VITVPKPRLGQALQYDMDLECHV 249 (386)
Q Consensus 180 ~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~---~~~~~~~l~v~~~p----~~~~~~~~~~~~~g~~~~l~C~~ 249 (386)
.. ....+..|.|.+++.+|+|.|+|.+.|. .+. ..+..+.|.|..+| .+. .+....+.+|+.+.|.|.+
T Consensus 174 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~ 252 (329)
T 3oq3_B 174 GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTA 252 (329)
T ss_dssp SSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEE
T ss_pred CceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEE
Confidence 32 3334678999999999999999999986 433 12344778887776 333 5566778899999999999
Q ss_pred EecC---CC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe-EEEEEEEcCCCceeeEEEEEE
Q psy8823 250 EAYP---PP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG-SYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 250 ~g~p---~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.|.| .+ .+.|++++..+.. ............. ......|.|.++..+|+| .|+|.|.|..|....++.|.|
T Consensus 253 ~g~p~~~~~i~v~W~~~g~~i~~-~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 253 VSTSLLVDDVLIDWENPSGWIIG-LDFGVYSILTSSG-GITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EETTCCTTCCEEEEECTTSCBCC-BCSSEEEEEEEET-TEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred EECCCCCCCcEEEEEECCeeeec-cCCceeeeecccC-ceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 9998 77 8899999886311 1222111111111 236788999999999999 999999999999999988876
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=256.46 Aligned_cols=260 Identities=16% Similarity=0.210 Sum_probs=181.2
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
..+..|+.+.|.|.+.|.|.+.|+|++++....... .......... ...| +..|+|.|+|
T Consensus 149 ~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~-----------~~~~~~~~~~----~~~l-----~~~d~G~Y~C 208 (423)
T 3qs7_E 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK-----------EESPAVVKKE----EKVL-----HELFGTDIRC 208 (423)
T ss_dssp EEEECSSSSCEEEEEEESSCCEEEEEEC------------------------CEEEC----CSEE-----CCCCSSCEEE
T ss_pred cEeccCCceEEEEEEeeecCCeEEEEECCCCCcccc-----------cccccccccc----ceEE-----ecccCeEEEE
Confidence 345678999999999999999999999876431100 0000000000 0011 5789999999
Q ss_pred EeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCc----------e
Q psy8823 114 QVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGG----------S 182 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~----------~ 182 (386)
.|.|..+......+.|.|..+|... +....+.+|+.+.|.|.+.| .|.+.++|++++..+..... .
T Consensus 209 ~A~N~~G~~~~~~~~l~V~~~p~~~---~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~ 285 (423)
T 3qs7_E 209 CARNELGRECTRLFTIDLNQTPQTT---LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285 (423)
T ss_dssp EEECSSCEEEEECEEEESSSCCCSS---TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTE
T ss_pred EEEcCCCCcceeeEEEEEecCCccC---CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCce
Confidence 9998776655555777777666542 34667899999999999988 67789999999987644321 1
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCC--CcccccCCCcEEEEEEEEecCCCeeEEE
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPK--PRLGQALQYDMDLECHVEAYPPPAIVWI 260 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~~W~ 260 (386)
......|.|.+++.+|+|.|+|.|.|. .+..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.|+|.|.+.|+
T Consensus 286 ~~~~~~L~I~~v~~~D~G~Y~C~A~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~ 361 (423)
T 3qs7_E 286 MIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT 361 (423)
T ss_dssp EEEEEEEEESSCCTTTCEEEEEEETTE----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEE
T ss_pred eEEEEEEEEeecCHHHCEEEEEEEecC----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEE
Confidence 223457999999999999999999987 5678889999888876544 3466788999999999999999999999
Q ss_pred eCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC
Q psy8823 261 KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ 331 (386)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~ 331 (386)
+++.. +........ ....+.+.....+|+|.|+|.|.|..|..+.++.|.|...|..+..
T Consensus 362 k~g~~--l~~~~~~~~---------~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~ 421 (423)
T 3qs7_E 362 FSRKS--FPCEQKGLD---------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH 421 (423)
T ss_dssp ETTEE--EECBCCBCS---------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----------
T ss_pred ECCEE--CCCcccccc---------CCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCccccc
Confidence 99988 433321000 0111222456678999999999999999999999999988876543
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=244.79 Aligned_cols=276 Identities=12% Similarity=0.142 Sum_probs=185.7
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.|........+.+|++++|.|.+.+. +.|++++..+.. +... ........+|.|.+++
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~----------------~~~~-~~~~~~~~~L~i~~~~ 59 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ----------------EMAK-AQDGTFSSVLTLTNLT 59 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE----------------EEEE-CTTSCEEEEEEECSCC
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc----------------ceec-cCCCceeEEEEEccCC
Confidence 345555566778999999999998754 999998865411 1111 1111224589999999
Q ss_pred CCCCeEEEEEeEEcccce--eeeEEEEEEecCCeeecCCCce---EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC
Q psy8823 105 ETDAGYYRCQVIIGINNK--ISAEVDLQVRRPPVISDNSTRS---LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT 179 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~---~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~ 179 (386)
.+|+|.|+|.+.|..+.. .+..+.|.|..+.......... ..+.+|+.+.|.|.+. .|.+.++|++++......
T Consensus 60 ~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~ 138 (289)
T 3mjg_X 60 GLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP 138 (289)
T ss_dssp GGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC
T ss_pred hhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc
Confidence 999999999998765432 2344455554333222221222 6788999999999998 677889999875322211
Q ss_pred CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe--cceEeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 180 GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF--APVITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 180 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
........ +. ...|+|.|+|.+.|..+...+..+.+.|.. +|.+...+....+.+|+.+.|.|.+.|.|.+.+
T Consensus 139 ~~~~~~~~-~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v 213 (289)
T 3mjg_X 139 VPYDHQRG-FS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNF 213 (289)
T ss_dssp CCEETTTE-EE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEE
T ss_pred eeecCCcC-ee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcce
Confidence 11111111 11 357999999999987665555566777765 566665555567889999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|++++.. ......................|.|.++..+|+|.|+|.|.|..|....++.|.|...|...
T Consensus 214 ~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 214 EWTYPRKE--SGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283 (289)
T ss_dssp EEECTTSS--SSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred EEEcCCcc--CCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence 99987764 21111111111111123357899999999999999999999999999999999999887643
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=283.32 Aligned_cols=339 Identities=14% Similarity=0.171 Sum_probs=127.6
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecC-CCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD-TASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~ 101 (386)
.+|.+...+....+.+|++|+|.|...+ .+.|++.+.... ...++..... ......+|.|.
T Consensus 30 ~~p~l~~~~~~~~v~~G~~vtL~C~~~~----~v~W~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~I~ 91 (772)
T 3v2a_R 30 DLPRLSIQKDILTIKANTTLQITCRGQR----DLDWLWPNNQSG--------------SEQRVEVTECSDGLFCKTLTIP 91 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEECCCCCeEEEcCCCCEEEEEeccC----CeeeeCCCCCCc--------------cCCceeEEEcCCCcEEEEEEEC
Confidence 5666666666778999999999998652 578988664321 0111111111 11124489999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecC--Ceeec--CCCceEEEeCC--ccEEEEEEeeeeCCCeEEEEEc--C
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRP--PVISD--NSTRSLVVSEG--QPVQLECFAGGHPTPRISWRRE--N 173 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~--~~~~~~~~~~g--~~v~l~C~~~~~~~~~v~W~~~--~ 173 (386)
+++.+|+|.|+|.+. ....+..+.|.|..+ |.+.. ..+..+.+.+| +.++|.|.+.+ |.+.+.|+++ +
T Consensus 92 ~~~~~d~G~Y~C~~~---~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~ 167 (772)
T 3v2a_R 92 KVIGNDTGAYKCFYR---ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPE 167 (772)
T ss_dssp -------------------------------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTT
T ss_pred CCcHhhCEeEEEEEc---CCCEEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCC
Confidence 999999999999986 222344455555433 22221 22345678889 88999999976 7789999998 6
Q ss_pred eeeCCCCce--EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec--ceEeeCC-CcccccCCCcEEEEEE
Q psy8823 174 NAILPTGGS--IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA--PVITVPK-PRLGQALQYDMDLECH 248 (386)
Q Consensus 174 ~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~-~~~~~~~g~~~~l~C~ 248 (386)
..+...... ......|.|.+++.+|.|.|+|.+.+......+..+.+.+... +.+...+ ....+.+|+.++|.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~ 247 (772)
T 3v2a_R 168 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 247 (772)
T ss_dssp EEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEE
T ss_pred ccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEE
Confidence 665443322 2335679999999999999999999765443333345555432 2333333 3357889999999999
Q ss_pred EEec--CCCeeEEEeCCeeeeeecCceeEEeeeee---cCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 249 VEAY--PPPAIVWIKEDTQQVLTNNQHYSISHFAT---ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 249 ~~g~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
+.+. +.+.+.|++++.. +............. ........|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 248 ~~~~~~~~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 325 (772)
T 3v2a_R 248 ARTELNVGIDFNWEYPSSK--HQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325 (772)
T ss_dssp EEECTTCCCEEEEECC----------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEE
T ss_pred EecCCCCceeEEEecCCcc--CCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEe
Confidence 9884 4568999999876 32222211110000 222356789999999999999999999999998999999998
Q ss_pred ecCCCCCCC---CCceeecCcceeeeEEecCCC---CCcccccceeeecccc---eeeeeeeeecccccCC
Q psy8823 324 IIPVCPPQT---QPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLL---YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 324 ~~p~~~~~~---~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~---~~~~i~~v~~~d~~~~ 385 (386)
..|...... ....+..|+.++|.|.+.+.| ++|+++|..+....+. ..|.|..|+.+|+..|
T Consensus 326 ~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y 396 (772)
T 3v2a_R 326 EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNY 396 (772)
T ss_dssp CCCC-------------------------------------------------------------------
T ss_pred CCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceE
Confidence 877543322 345678899999999998876 7999999998876543 4799999999999865
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=253.79 Aligned_cols=280 Identities=18% Similarity=0.259 Sum_probs=172.3
Q ss_pred ccceeeecCCcEEEEEEEeeCC-----------CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ-----------DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~-----------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.....+.+|+++.|.|.+.+.| .+.+.|++++...... ..... ...+.++... +.+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~-~~~~~----~~~~~~~~~~------~~~L~ 82 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLE-EPINF----RLPENRISKE------KDVLW 82 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCE-EECCC----CCGGGCEEEE------TTEEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccc-ccccc----cccCceEeec------CCEEE
Confidence 3455689999999999998654 3789999988432100 00000 0011122211 22799
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeec---CCCceEEEeCCccEEEEEEe-----eeeCCCeEEEEE
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD---NSTRSLVVSEGQPVQLECFA-----GGHPTPRISWRR 171 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~---~~~~~~~~~~g~~v~l~C~~-----~~~~~~~v~W~~ 171 (386)
|.+++.+|+|.|+|.+.+.. ......+.|.|..++.... ..+....+.+|+.+.|.|.+ .+.|.+.+.|++
T Consensus 83 i~~~~~~D~G~Y~C~a~n~~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k 161 (349)
T 4dep_C 83 FRPTLLNDTGNYTCMLRNTT-YCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM 161 (349)
T ss_dssp ESSCCGGGCEEEEEEEECSS-CEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEE
T ss_pred EccCChhhCEEEEEEEecCC-ceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEee
Confidence 99999999999999998754 3345567788877553322 11335567899999999975 678899999999
Q ss_pred cCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCC-CCc--eeeeEEEEEEe------cceEeeCCCcc--cccCC
Q psy8823 172 ENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGV-GKG--TRRNIAVEVEF------APVITVPKPRL--GQALQ 240 (386)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~--~~~~~~l~v~~------~p~~~~~~~~~--~~~~g 240 (386)
++..+.........+..|.|.+++.+|+|.|+|.+.|.. +.. .+..+.|.|.. +|.+..+.... .+..|
T Consensus 162 ~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G 241 (349)
T 4dep_C 162 GCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPG 241 (349)
T ss_dssp TTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-------------
T ss_pred CCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecC
Confidence 999886554445556789999999999999999999976 432 35667777766 46555444332 67889
Q ss_pred CcEEEEEEEE----ecCCCeeEEEeCCeeeeeec-CceeEEeeee----ecCceeeeEEEEeecccCCC-eEEEEEEEcC
Q psy8823 241 YDMDLECHVE----AYPPPAIVWIKEDTQQVLTN-NQHYSISHFA----TADEFTDTTIRVITIEKRQY-GSYICRAANK 310 (386)
Q Consensus 241 ~~~~l~C~~~----g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~ 310 (386)
+.+.|.|.+. |.|.|.+.|++++.. +.. ..++...... .........|.|.++..+|+ |.|+|.|.|.
T Consensus 242 ~~v~l~C~~~~~~~g~p~p~v~W~~~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~ 319 (349)
T 4dep_C 242 EELLIPCTVYFSFLMDSRNEVWWTIDGKK--PDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSA 319 (349)
T ss_dssp ---CCCEEEEECCCTTCCCEEEEESSCC----------CCCCEEEECCTTCCEEEEECC-------------CEEEEECS
T ss_pred CcEEEEEEEEEccCCCCCCEEEEEECCEE--ccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcC
Confidence 9999999998 568889999999987 332 1111111100 01122356799999999999 9999999999
Q ss_pred CCceeeEEEEEEEe
Q psy8823 311 LGTSEKTVELFESI 324 (386)
Q Consensus 311 ~g~~~~~~~l~v~~ 324 (386)
.|....++.|.|..
T Consensus 320 ~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 320 KGEVAKAAKVKQKV 333 (349)
T ss_dssp SCEEEEECC-----
T ss_pred CCcEEEEEEEeeec
Confidence 99999999988854
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=264.69 Aligned_cols=331 Identities=15% Similarity=0.234 Sum_probs=200.2
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cc-cCCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PI-STGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~-~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++++|.|.+.+.+ ...+.|+|+........+ .. ..+..... ..+|+.+..+...+.++|.|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (457)
T 1hzh_H 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (457)
T ss_dssp ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence 45567799999999999998765 567999996433211111 11 11111111 1346665554445678999999
Q ss_pred cCCCCCeEEEEEeEEccc---------c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC-C
Q psy8823 103 IQETDAGYYRCQVIIGIN---------N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-P 165 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~ 165 (386)
++.+|+|.|+|.+.+..+ . .......|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |. +
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~ 164 (457)
T 1hzh_H 86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPV 164 (457)
T ss_dssp CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCC-SCCCTTCCEEEEEEEESBBSCCC
T ss_pred CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCcc-ccccCCCcEEEEEEEeEEeCCCe
Confidence 999999999999987543 0 123445677764 3443322211 135689999999999876 54 7
Q ss_pred eEEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE--------------
Q psy8823 166 RISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE-------------- 223 (386)
Q Consensus 166 ~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~-------------- 223 (386)
.++|++++..+. ..++.......|.|.++..+| |.|+|.+.|..+. ......+.+.
T Consensus 165 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ 242 (457)
T 1hzh_H 165 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN-TKVDKKAEPKSCDKTHTCPPCPAP 242 (457)
T ss_dssp EEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGT-EEEEEECCCCCSCSSCSCCSCCCC
T ss_pred EEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCC-cceeEEecccCCCcccccCCCCCc
Confidence 899999885432 111222234579999999989 9999999996654 2222333221
Q ss_pred ---ecceE-eeCCCccc-ccCCCcEEEEEEEEecCCC----eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEee
Q psy8823 224 ---FAPVI-TVPKPRLG-QALQYDMDLECHVEAYPPP----AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVIT 294 (386)
Q Consensus 224 ---~~p~~-~~~~~~~~-~~~g~~~~l~C~~~g~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 294 (386)
.+|.+ ..++.... +.+|+.+.|.|.+.|.|++ .+.|++++.. +...................+.|.|..
T Consensus 243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~--~~~~~~~~~~~~~~g~~~~~~~l~i~~ 320 (457)
T 1hzh_H 243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVE--VHNAKTKPREEQYNSTYRVVSVLTVLH 320 (457)
T ss_dssp CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEE--ECCCEEEEEEECTTSCEEEEEEECCCH
T ss_pred cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcc--ccccccccceecCCCcEEEEEEEEECH
Confidence 14444 22322222 5679999999999998653 8999999987 332221111111111111123333434
Q ss_pred cccCCCeEEEEEEEcCCCceeeEEEEEE----EecCCCCCCCCCceeecCcceeeeEEecCC-C----CCcccccceeee
Q psy8823 295 IEKRQYGSYICRAANKLGTSEKTVELFE----SIIPVCPPQTQPSELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNC 365 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v----~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~ 365 (386)
...+|+|.|+|.|.|..+....+..+.+ ...|.............++.++|.|.+.|. | ++|++||..+..
T Consensus 321 ~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~ 400 (457)
T 1hzh_H 321 QDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN 400 (457)
T ss_dssp HHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred HHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEEEEeEECCCCEEEEEECCEECcc
Confidence 4445599999999998766544433322 112211111112222334459999999764 2 689999998854
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=260.58 Aligned_cols=272 Identities=22% Similarity=0.398 Sum_probs=137.7
Q ss_pred ccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 109 (386)
+....+.+|++++|.|.+.+. |.+.+.|++++..+. .+.++.. .+.+|.|.+++.+|+|
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~--------------~~~~~~~------~~~~L~i~~v~~~D~G 74 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLV--------------PSERVLV------GPQRLQVLNASHEDSG 74 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCC--------------CcccEEe------ccceEEEeecccccCE
Confidence 677779999999999999876 567899999886542 1122222 2348999999999999
Q ss_pred EEEEEeEEcccceeeeEEEEEEecCC----------------------eeec---CCCceEEEeCCccEEEEEEeeeeCC
Q psy8823 110 YYRCQVIIGINNKISAEVDLQVRRPP----------------------VISD---NSTRSLVVSEGQPVQLECFAGGHPT 164 (386)
Q Consensus 110 ~Y~C~~~~~~~~~~~~~~~l~v~~~p----------------------~~~~---~~~~~~~~~~g~~v~l~C~~~~~~~ 164 (386)
.|+|.+.+. +..+..+.|.|...+ .+.. .......+.+|+.+.|.|.+.|.|.
T Consensus 75 ~Y~C~a~n~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~ 152 (334)
T 1ry7_B 75 AYSCRQRLT--QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPT 152 (334)
T ss_dssp ----------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSC
T ss_pred EEEEEEEeC--CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCC
Confidence 999999876 344556666665433 2211 1123467889999999999999999
Q ss_pred CeEEEEEcCeeeCCCCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec----ceEee-CCCc
Q psy8823 165 PRISWRRENNAILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA----PVITV-PKPR 234 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~----p~~~~-~~~~ 234 (386)
+.+.|++++..+...... ......|.|.+++.+|+|.|+|.+.|..+. ....+.|.|... |.+.. .+..
T Consensus 153 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~ 231 (334)
T 1ry7_B 153 PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPAN 231 (334)
T ss_dssp CEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEE-EEEEEEEEEECCCCSSCBCCTTCSCC
T ss_pred CeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCC-EEEEEEEEEecCCCCCCceEecCCCc
Confidence 999999999877544321 113457999999999999999999998876 566778888763 22322 2345
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEe----CCeeeeeecCce--eEEeeee--ecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIK----EDTQQVLTNNQH--YSISHFA--TADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
..+.+|+.+.|.|.+.|.|.|.+.|++ ++.. +..... ....... .........|.|.++..+|+|.|+|.
T Consensus 232 ~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 309 (334)
T 1ry7_B 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK--VGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCL 309 (334)
T ss_dssp EEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCS--BCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEE
T ss_pred eEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCcc--ccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEE
Confidence 667889999999999999999999999 5554 222211 1111000 00011234799999999999999999
Q ss_pred EEcCCCceeeEEEEEEEecCC
Q psy8823 307 AANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 307 a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|.|..|....++.|.|...|.
T Consensus 310 a~N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 310 AGNSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp EEESSCCEEEEEEEEEECSCC
T ss_pred EeCCCCeEEEEEEEEEEECCC
Confidence 999999999999999987664
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=234.79 Aligned_cols=239 Identities=23% Similarity=0.294 Sum_probs=188.2
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|.|.+.|....+.+|+.+.|.|.+.+.+.+ .+.|++++..+.. .+.+|.|.+
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~--------------------------~~~~l~i~~ 54 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT--------------------------STPSYRITS 54 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC--------------------------CSSEEEESS
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec--------------------------cCCeEEEec
Confidence 4778888888889999999999999887776 8999998754311 022799999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCc
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
++.+|+|.|+|.+.+. ..+..+.|.|..++..... ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus 55 ~~~~d~G~Y~C~~~~~---~~s~~~~l~v~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~--- 126 (262)
T 3rjd_A 55 ASVNDSGEYRCQRGLS---GRSDPIQLEIHRGWLLLQV--SSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF--- 126 (262)
T ss_dssp CCGGGCEEEEEEESSS---CCCCCEEEEEECSSEEEEE--SCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE---
T ss_pred CCcccCeEEEEEEecC---CccccEEEEEeccceEecC--CCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc---
Confidence 9999999999998743 2345677888777654432 23457899999999999 7778889999999987632
Q ss_pred eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCC-C--
Q psy8823 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPP-P-- 255 (386)
Q Consensus 182 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~-- 255 (386)
......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|.. +|.+...+ ...+.+|+.+.|.|.+.+.|. +
T Consensus 127 -~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~ 203 (262)
T 3rjd_A 127 -FHWNSNLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGL 203 (262)
T ss_dssp -EEECCCEEESSCCGGGCEEEEEEEESSSEE-EEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC----
T ss_pred -cCCCCeEEEEECChhhCEEEEEEEeCCCCc-cccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCc
Confidence 223567999999999999999999998754 56777888875 44454444 566788999999999999886 4
Q ss_pred --eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 256 --AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 256 --~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.+.|++++.. +... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 204 ~~~~~w~~~~~~--~~~~-------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 204 QLYFSFYMGSKT--LRGR-------------NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp -EEEEEEETTEE--EEEE-------------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred cEEEEEEeCCcE--eccc-------------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 3788999887 3211 135679999999999999999999999975
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=249.26 Aligned_cols=264 Identities=19% Similarity=0.316 Sum_probs=197.8
Q ss_pred cceeeecCCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe-
Q psy8823 32 QEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG- 109 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G- 109 (386)
....+.+|+.+.|.|.+ .+.|.+.+.|++++....... .. ...+.++.... +++|.|.+++.+|+|
T Consensus 108 ~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~---~~----~~~~~~~~~~~-----~~~L~i~~v~~~d~G~ 175 (395)
T 1bih_A 108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA---DV----TDFDRRITAGP-----DGNLYFTIVTKEDVSD 175 (395)
T ss_dssp EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGG---CC----CCCCTTEEECT-----TSCEEEEEECGGGCCS
T ss_pred cceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccc---cc----ccccccEEEcC-----CCcEEEEEEeeccCCC
Confidence 45557899999999996 677888999999863211000 00 00122222222 227999999999999
Q ss_pred --EEEEEeEEcccceeeeEE--EEEEec----------CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 110 --YYRCQVIIGINNKISAEV--DLQVRR----------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 110 --~Y~C~~~~~~~~~~~~~~--~l~v~~----------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
.|+|.+.+..+....... .+.+.. +|.+ .+....+.+|+.+.|.|.+.|.|.+.+.|++++..
T Consensus 176 ~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~ 252 (395)
T 1bih_A 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY---VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKD 252 (395)
T ss_dssp SEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE---ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEE
T ss_pred ceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee---cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEE
Confidence 999999986554322111 111111 1111 13456788999999999999999999999999988
Q ss_pred eCCCCceEE------eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCc-ccccCCCcEEEEEE
Q psy8823 176 ILPTGGSIY------RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPR-LGQALQYDMDLECH 248 (386)
Q Consensus 176 ~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~ 248 (386)
+........ .+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...+.. ..+.+|+.+.|.|.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~ 332 (395)
T 1bih_A 253 VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332 (395)
T ss_dssp CCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECE
T ss_pred cCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEE
Confidence 754322111 12379999999999999999999998876666899999999998877666 77889999999999
Q ss_pred EEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 249 VEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 249 ~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.|.|.+.|++++.. +... ++.. ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 333 ~~g~p~p~v~W~~~g~~--~~~~-~~~~---------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 333 VTGLPAPNVVWSHNAKP--LSGG-RATV---------TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp EEEESCCCCEEEETTEE--CCSS-SEEE---------ETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ECcccCCeeEEEECCEE--CCCC-ceEE---------ECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 99999999999999987 4433 3322 2348999999999999999999999999999998877
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=249.39 Aligned_cols=273 Identities=17% Similarity=0.235 Sum_probs=195.1
Q ss_pred cceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|+.+.|.|.+.+.+ .+.+.|++++..... .. ....++... +.+|.|.+++.+|+|.
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~---~~-------~~~~~~~~~------~~~L~i~~v~~~D~G~ 76 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPV---ST-------EQASRIHQH------KEKLWFVPAKVEDSGH 76 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCS---CC-------CTTSSSEEC------SSBEECTTCCGGGCSC
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCcc---cc-------ccCCcEecc------CCeEEECCCChhhCEE
Confidence 345689999999999998776 678999998864311 00 011222221 1279999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEe-cCCeeecC--CCceEEEeCCccEEEEEEe------eeeCCCeEEEEEcCeeeCCCCc
Q psy8823 111 YRCQVIIGINNKISAEVDLQVR-RPPVISDN--STRSLVVSEGQPVQLECFA------GGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~-~~p~~~~~--~~~~~~~~~g~~v~l~C~~------~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
|+|.+.+..+ .....+.+.+. .+|.+... ......+..|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus 77 Y~C~a~n~~g-~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~ 155 (315)
T 1itb_B 77 YYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI 155 (315)
T ss_dssp CEECCCSSSC-CCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSS
T ss_pred EEEEEeCCce-EEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccc
Confidence 9999986543 23344444443 23332211 1123568899999999998 7889999999999998855333
Q ss_pred -eEEeeeEEEECCCCCCCCeEEEEEEe-cCCCCce--eeeEEEEEE-----ecceEeeCCCc-ccccCCCcEEEEEEEEe
Q psy8823 182 -SIYRGSILKIPQITKEDRGTYYCVAE-NGVGKGT--RRNIAVEVE-----FAPVITVPKPR-LGQALQYDMDLECHVEA 251 (386)
Q Consensus 182 -~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~--~~~~~l~v~-----~~p~~~~~~~~-~~~~~g~~~~l~C~~~g 251 (386)
....+..|.|.+++.+|+|.|+|.+. |..+... ...+.+.+. .+|.+..++.. ..+.+|+.+.|.|.+.|
T Consensus 156 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g 235 (315)
T 1itb_B 156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG 235 (315)
T ss_dssp SEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEE
T ss_pred eEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEec
Confidence 33456789999999999999999999 6766643 233444343 56666555443 46889999999999999
Q ss_pred cCCCeeEEEeCCeeeeeecCceeEEeeeee-------cCceeeeEEEEeecccCC-CeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 252 YPPPAIVWIKEDTQQVLTNNQHYSISHFAT-------ADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 252 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.|.|.+.|++++.. +............. ......+.|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus 236 ~P~p~i~W~~~g~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 236 QLSDIAYWKWNGSV--IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp CTTSEEEEEETTEE--CCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred CCCCeeEEEECCEE--CCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 99999999999987 44433211111110 011245689999999999 999999999999999999999874
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=245.54 Aligned_cols=258 Identities=16% Similarity=0.206 Sum_probs=188.1
Q ss_pred eeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 34 QIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
..+.+|+.+.|.|... +.|.+.+.|+|++..+.. +.++.... .....+|.|.+++.+|+|.|+
T Consensus 11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~--------------~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~ 74 (312)
T 2y23_A 11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTED--------------SPRLEVES--KGNKTKMTFKDLGMDDLGIYS 74 (312)
T ss_dssp EEECTTCCEEEEEECSSCCTTCCEEEEETTEECTT--------------CTTEEEEE--ETTEEEEEESSCCGGGCEEEE
T ss_pred EEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCC--------------CCCEEEEE--eCCEEEEEECcCCccCCEEEE
Confidence 4478999999999886 457788999998865421 22333322 223458999999999999999
Q ss_pred EEeEEcccceeeeEEEEEEec------------CCeeecCCCceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCC
Q psy8823 113 CQVIIGINNKISAEVDLQVRR------------PPVISDNSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPT 179 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~~------------~p~~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~ 179 (386)
|.+.+..+... ...+.|.. +|.+.........+.+|+.+.|.|.+. +.|.+.+.|++++..+...
T Consensus 75 C~~~n~~g~~~--s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~ 152 (312)
T 2y23_A 75 CDVTDTDGIAS--SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG 152 (312)
T ss_dssp EEESSSCCCCE--EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS
T ss_pred EEEEeCCCcEE--EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC
Confidence 99987655332 34455432 444433323366788999999999998 8899999999999998765
Q ss_pred CceEEe------eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE---------------------ecceEeeCC
Q psy8823 180 GGSIYR------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE---------------------FAPVITVPK 232 (386)
Q Consensus 180 ~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~---------------------~~p~~~~~~ 232 (386)
...... ...|.|.+++.+|+|.|+|.+.+.... ....+.+. .+|.+....
T Consensus 153 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 229 (312)
T 2y23_A 153 PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT---NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 229 (312)
T ss_dssp SSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE---EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred CcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce---EEEEEEEcchhhhhhcccccccccchhhccCCceeecc
Confidence 543332 234999999999999999999865433 22233321 124433222
Q ss_pred CcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
...+.+|+.+.|.|.+.|.|+| .+.|++++.. +....++... .....|.|.++..+|+|.|+|.|.|..
T Consensus 230 -~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~--~~~~~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~N~~ 299 (312)
T 2y23_A 230 -SWEVTGECNVLLKCKVANIKKETHIVWYKDERE--ISVDEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDR 299 (312)
T ss_dssp -EEEEETTTEEEEEEEEESCCSSCEEEEEETTEE--EEEECCC-----------CEEEEEECSCSGGGCEEEEEEEESTT
T ss_pred -eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEE--CCCCCcEEEE-------CCEEEEEECcCCHHHCEEEEEEEEcCC
Confidence 2567799999999999999998 9999999988 4433333322 135789999999999999999999999
Q ss_pred CceeeEEEEEE
Q psy8823 312 GTSEKTVELFE 322 (386)
Q Consensus 312 g~~~~~~~l~v 322 (386)
|....++.|.+
T Consensus 300 G~~~~~~~l~i 310 (312)
T 2y23_A 300 GKDKSRLKLVD 310 (312)
T ss_dssp CCEEEEEEECS
T ss_pred CceeeeeEEEe
Confidence 99999988865
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=286.97 Aligned_cols=349 Identities=18% Similarity=0.250 Sum_probs=65.6
Q ss_pred CCeeeeeccc-eeeecCCcEEEEEEEee--CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 24 TPTISYISQE-QIKDIGGTVELKCSVQY--AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 24 ~p~i~~~~~~-~~v~~G~~v~L~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
++.+.+.+.. ..+.+|++++|.|.+.+ .+...+.|++++......... ..................|.|
T Consensus 223 ~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~L~i 294 (772)
T 3v2a_R 223 IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV--------NRDLKTQSGSEMKKFLSTLTI 294 (772)
T ss_dssp EEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CE--------EEEC-----CCCEEEEEEEEE
T ss_pred cceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceee--------eccccccccccceEEEEEEEE
Confidence 3455555554 57899999999999987 445679999988654221000 000000000011224458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCC--CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNS--TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
.+++.+|+|.|+|.+.+..+ ..+..+.|.|..+|.+.... .....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 295 ~~v~~~d~G~Y~C~~~~~~~-~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~ 373 (772)
T 3v2a_R 295 DGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES 373 (772)
T ss_dssp SSCCSTTCSEEEEEEECSSC-EEEEEEEEEEECCCC--------------------------------------------
T ss_pred CcCCcCCCeEEEEEEEcCCc-ceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCC
Confidence 99999999999999986544 45777889998888654322 2345688999999999999999999999999987754
Q ss_pred CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEecceEeeC---CCcccccCCCcEEEEEEEEecCC
Q psy8823 179 TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEFAPVITVP---KPRLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 179 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~g~p~ 254 (386)
.... .....|.|.++..+|+|.|+|.+.|..+.. .+..+.|.|.++|.+... .+...+.+|+.++|.|.+.|.|.
T Consensus 374 ~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 452 (772)
T 3v2a_R 374 NHTI-KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPP 452 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceE-ccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCC
Confidence 3222 244789999999999999999999987653 355778888888876432 12224778999999999999999
Q ss_pred Ce-eEEEeCCeeeee-e-----------------------cCceeEE----eeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 255 PA-IVWIKEDTQQVL-T-----------------------NNQHYSI----SHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 255 ~~-~~W~~~~~~~~~-~-----------------------~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|. +.|++++..... . ....... .............|.|.++ +|+|.|+|
T Consensus 453 p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C 530 (772)
T 3v2a_R 453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKC 530 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEE
Confidence 96 999997432000 0 0000000 0000111112356777776 78999999
Q ss_pred EEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeeccc--------------
Q psy8823 306 RAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSL-------------- 368 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~-------------- 368 (386)
.|.|..|..+.++.|.|...|.....+ ...+..|+.+.|.|.+.+.| ++|++++..+.....
T Consensus 531 ~a~N~~g~~~~~~~l~V~~~p~i~~~p-~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~ 609 (772)
T 3v2a_R 531 EAVNKVGRGERVISFHVTRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEccccccceeEEEEEECCceeeccC-CcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccce
Confidence 999999999999999888766543322 24577899999999998887 799999977643221
Q ss_pred --------------ceeeeeeeeecccccCC
Q psy8823 369 --------------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 369 --------------~~~~~i~~v~~~d~~~~ 385 (386)
...|.|.++..+|++.|
T Consensus 610 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 640 (772)
T 3v2a_R 610 WKLNATMFSNSTNDILIMELKNASLQDQGDY 640 (772)
T ss_dssp -------------------------------
T ss_pred eeccceeeecCCCceEEEEECCCCccCCcEE
Confidence 12499999999999876
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=231.17 Aligned_cols=244 Identities=21% Similarity=0.381 Sum_probs=200.5
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE----eeeEEEECCCCCCCCeEEEEEEec
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.+|.+... +....+.+|+.++|.|.+.+.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~pP~~~~~-p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 82 (284)
T 2rik_A 4 APPFFDLK-PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82 (284)
T ss_dssp CCCEEEEC-CCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEcc-ccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence 45655544 4566789999999999999999999999999998866544322 256899999999999999999999
Q ss_pred CCCCceeeeEEEEEEecceEeeCCC-cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceee
Q psy8823 209 GVGKGTRRNIAVEVEFAPVITVPKP-RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTD 287 (386)
Q Consensus 209 ~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (386)
..+. .+..+.|.|..+|.+..... ...+.+|+.+.|.|.+.|.|.+.+.|++++.. +.....+..... ...
T Consensus 83 ~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~~~~~~-----~~~ 154 (284)
T 2rik_A 83 VAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE--IQESSKFRMSFV-----ESV 154 (284)
T ss_dssp TTEE-EEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEE--CCCSSSEEEEEE-----TTE
T ss_pred CCce-EEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEE--CcCCCcEEEEEc-----CCE
Confidence 8776 56788899999888665433 45578899999999999999999999999988 444443332211 135
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceee
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLN 364 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~ 364 (386)
..|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.....+....+..|+.++|.|.+.+.| ++|++++..+.
T Consensus 155 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~ 234 (284)
T 2rik_A 155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR 234 (284)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEEC
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECc
Confidence 789999999999999999999999999999999999888766666667788999999999999888 68999999998
Q ss_pred ecccce--------eeeeeeeecccccCC
Q psy8823 365 CSSLLY--------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 365 ~~~~~~--------~~~i~~v~~~d~~~~ 385 (386)
.+.++. .|.|..|+.+|+..|
T Consensus 235 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 263 (284)
T 2rik_A 235 SGKKYKIMSENFLTSIHILNVDSADIGEY 263 (284)
T ss_dssp BTTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CCCCEEEEEcCCEEEEEEcCCCcccCEEE
Confidence 776542 689999999998765
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=270.96 Aligned_cols=349 Identities=12% Similarity=0.197 Sum_probs=214.9
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccC-Cce---eEEeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IST-GSS---LIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++++|.|.+.+.+ ...|.|+|+........+. ... +.. ....++|+.+..+...++++|.|.++
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (434)
T 1igy_B 6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL 85 (434)
T ss_dssp CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence 4566789999999999998653 5679999975322111010 000 000 00113455554443345668999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeeeC
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAIL 177 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~ 177 (386)
+.+|+|.|+|.+.+.. ......+.|.|.. +|.+....+.. .+.+|+.++|.|.+.|. |.+ .++|++++..+.
T Consensus 86 ~~~D~G~Y~C~~~~~~-~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~ 163 (434)
T 1igy_B 86 TSDDSAVYYCVREGEV-PYWGQGTTVTVSSAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 163 (434)
T ss_dssp CGGGCSEECCCCSSSS-CCCCCCEECEECCSCCBCCCEEEECCCC-CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred ChHHCEEEEEEEEccc-cccCCceEEEEccCCCCCCeEEEcCCcc-ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence 9999999999997632 2223445677753 34333211111 24689999999999886 665 899999886421
Q ss_pred C-------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe---------c---ceEeeCCCccc--
Q psy8823 178 P-------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF---------A---PVITVPKPRLG-- 236 (386)
Q Consensus 178 ~-------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---------~---p~~~~~~~~~~-- 236 (386)
. ..........|.|.++..+| |.|+|.+.|..+.. .....+.+.. . |.+...++...
T Consensus 164 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~ 241 (434)
T 1igy_B 164 VHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDT 241 (434)
T ss_dssp EEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHH
T ss_pred eEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHh
Confidence 0 01222234579999999888 99999999987762 2222222210 0 33333233222
Q ss_pred ccCCCcEEEEEEEEecC----CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 237 QALQYDMDLECHVEAYP----PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
+.+|+.+.|.|.+.|.+ .+.+.|++++.. +...................+.|.|.++..+|+|.|+|.|.|..|
T Consensus 242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 319 (434)
T 1igy_B 242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVE--VHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF 319 (434)
T ss_dssp HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCC--BCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred cccCCCcEEEEEEeccccCCCCeEEEEEeCCcc--cCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence 78899999999999884 348999999976 332211111111112222456799999999999999999999998
Q ss_pred ceeeEEEEE----EEecCCCCCCCCCceeecCcceeeeEEecCC-C----CCcccccceeeeccc----------c---e
Q psy8823 313 TSEKTVELF----ESIIPVCPPQTQPSELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNCSSL----------L---Y 370 (386)
Q Consensus 313 ~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~~~~----------~---~ 370 (386)
.......+. +...|.............++.++|.|.+.|. | ++|++||+.+..... + .
T Consensus 320 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s 399 (434)
T 1igy_B 320 PAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYS 399 (434)
T ss_dssp SSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEE
T ss_pred CCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEE
Confidence 653322222 2222322111222223456789999999763 3 689999998853211 0 1
Q ss_pred eeeeeeeecccccCC
Q psy8823 371 QCVLPLVDRQDRLMH 385 (386)
Q Consensus 371 ~~~i~~v~~~d~~~~ 385 (386)
.|.|.+...+|+..|
T Consensus 400 ~l~i~~~~~~~~g~Y 414 (434)
T 1igy_B 400 KLNVQKSNWEAGNTF 414 (434)
T ss_dssp EEEEEHHHHHTTCCE
T ss_pred EEEECchhccCCCEE
Confidence 366777766666543
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=251.40 Aligned_cols=285 Identities=16% Similarity=0.255 Sum_probs=207.0
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEe-------eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCC
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQ-------YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTA 92 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~-------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (386)
.+...|.+...+....+.+|+++.|.|.+. +.+.+.|.|++++....- ... ...++...
T Consensus 14 ~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~-----~~~-----~~~~~~~~---- 79 (339)
T 3o4o_C 14 AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTV-----PGE-----EETRMWAQ---- 79 (339)
T ss_dssp ----CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCC-----SCC-----SSSCEEEE----
T ss_pred cchhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCccc-----Ccc-----ccccEEee----
Confidence 455678899999999999999999999997 778889999998865310 000 01122211
Q ss_pred cceEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeee-cCCCceEEEeCCccEEEEEE-----eeeeCCCe
Q psy8823 93 SSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVIS-DNSTRSLVVSEGQPVQLECF-----AGGHPTPR 166 (386)
Q Consensus 93 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-~~~~~~~~~~~g~~v~l~C~-----~~~~~~~~ 166 (386)
+.+|.|.+++.+|+|.|+|.+.+..+ ..+..+.|.|..++... ........+.+|+.+.|.|. +.+.|.+.
T Consensus 80 --~~~L~i~~v~~~D~G~Y~C~~~n~~g-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~ 156 (339)
T 3o4o_C 80 --DGALWLLPALQEDSGTYVCTTRNASY-CDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK 156 (339)
T ss_dssp --TTEEEESSBCTTCCEEEECCEEETTE-EEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCC
T ss_pred --CCeEEECCCCcccCEEEEEEEECCcc-eEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCce
Confidence 22899999999999999999997643 45677888888765432 11122346889999999999 78888999
Q ss_pred EEEEEcCeeeCCCCceEE---eeeEEEECCCCCCCCeEEEEEEecCCCC---ceeeeEEEEEEe-----cceEeeCCCcc
Q psy8823 167 ISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGTYYCVAENGVGK---GTRRNIAVEVEF-----APVITVPKPRL 235 (386)
Q Consensus 167 v~W~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~---~~~~~~~l~v~~-----~p~~~~~~~~~ 235 (386)
+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|.. +|.+..++...
T Consensus 157 v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~ 236 (339)
T 3o4o_C 157 IQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI 236 (339)
T ss_dssp BCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCC
T ss_pred EEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCcee
Confidence 999999988765533222 1247999999999999999999997764 245667777764 45666666667
Q ss_pred cccCCCcEEEEEEE---EecC-CCeeEEEeCCeeeee-------ecCceeEEeeeeecCceeeeEEEEeecccCCC-eEE
Q psy8823 236 GQALQYDMDLECHV---EAYP-PPAIVWIKEDTQQVL-------TNNQHYSISHFATADEFTDTTIRVITIEKRQY-GSY 303 (386)
Q Consensus 236 ~~~~g~~~~l~C~~---~g~p-~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y 303 (386)
.+.+|+.+.|.|.+ .|.| .+.+.|++++..+.. .....+.. ...........|.|.++..+|. |.|
T Consensus 237 ~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~L~i~~v~~~d~~G~Y 314 (339)
T 3o4o_C 237 SASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY--SENNENYIEVPLIFDPVTREDLHMDF 314 (339)
T ss_dssp CCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEEC--CCSSSCEEEECCEECSSCCCSCCCCC
T ss_pred EeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEe--cccCceEEEEEEEEEEechhhcCccE
Confidence 78899999999999 8999 779999999876211 11111111 1111112234799999999997 999
Q ss_pred EEEEEcCCCceeeEEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~ 323 (386)
+|.|.|..|+.+..+.+.+.
T Consensus 315 ~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 315 KCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp EEEEEETTEEECCBCCCCC-
T ss_pred EEEEEeccCceEEEEEhhHh
Confidence 99999999999988877553
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=234.14 Aligned_cols=270 Identities=15% Similarity=0.153 Sum_probs=180.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|++..+... .. ....+..|.|.
T Consensus 22 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~----------------~~----~~~~~~~L~I~ 79 (316)
T 3vh8_G 22 QDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI----------------FH----GRIFQESFNMS 79 (316)
T ss_dssp --CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH----------------HH----HCCBSSCEEEC
T ss_pred CCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee----------------ec----CCcceEEEEEC
Confidence 45788888877 568899999999999866 6789999988654210 00 00112379999
Q ss_pred ccCCCCCeEEEEEeEEcc----cceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe
Q psy8823 102 DIQETDAGYYRCQVIIGI----NNKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN 174 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~----~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~ 174 (386)
+++.+|+|.|+|.+.+.. ....+..+.|.|... |.+...+ .. .+.+|+.++|.|.+. .+++.+.|++++.
T Consensus 80 ~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~-~~-~v~~G~~v~L~C~~~-~~~~~~~w~k~g~ 156 (316)
T 3vh8_G 80 PVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHP-GP-LVKSGERVILQCWSD-IMFEHFFLHKEGI 156 (316)
T ss_dssp SCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEES-CS-EEETTCCEEEEEEES-SCCSEEEEEETTC
T ss_pred CCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecC-CC-ccCCCCeEEEEEcCC-CCCcEEEEEECCC
Confidence 999999999999987532 223456677777543 3443322 22 378999999999995 4567899999988
Q ss_pred eeCCCCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCCc----eeeeEEEEEEe---cceEeeCCCcccccCCCc
Q psy8823 175 AILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGKG----TRRNIAVEVEF---APVITVPKPRLGQALQYD 242 (386)
Q Consensus 175 ~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~----~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~ 242 (386)
.+...... ......|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|.. +|.+...+. ..+.+|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~ 235 (316)
T 3vh8_G 157 SKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGES 235 (316)
T ss_dssp CSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-SCCCTTSC
T ss_pred ccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-CeecCCCc
Confidence 76432211 1245679999999999999999999976631 24566777753 445554433 36788999
Q ss_pred EEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc-----eeeE
Q psy8823 243 MDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT-----SEKT 317 (386)
Q Consensus 243 ~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~ 317 (386)
++|.|.+. .|.+.+.|++++..... .... ...........|.|.+++ |+|.|+|.|.|..+. .+..
T Consensus 236 v~L~C~~~-~~~~~~~W~k~g~~~~~--~~~~----~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~ 306 (316)
T 3vh8_G 236 VTLSCSSR-SSYDMYHLSREGGAHER--RLPA----VRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDP 306 (316)
T ss_dssp CEEEEEES-SCCSEEEEEETTSSCCE--EEEC----EECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCC
T ss_pred EEEEEECC-CCCcEEEEEECCCcCCC--ceec----eeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCc
Confidence 99999996 57789999999977221 1110 011112235789999999 999999999998763 4556
Q ss_pred EEEEEEecC
Q psy8823 318 VELFESIIP 326 (386)
Q Consensus 318 ~~l~v~~~p 326 (386)
+.|.|.+.|
T Consensus 307 ~~l~V~g~p 315 (316)
T 3vh8_G 307 LLVSVTGNP 315 (316)
T ss_dssp EEC------
T ss_pred EEEEEeCCC
Confidence 777777655
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=225.90 Aligned_cols=238 Identities=18% Similarity=0.252 Sum_probs=175.6
Q ss_pred ceeeecCCcEEEEEEEee-CCCC--cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc---CCC
Q psy8823 33 EQIKDIGGTVELKCSVQY-AQDY--PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI---QET 106 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~---~~~ 106 (386)
+..+.+|++++|.|.+.+ .|.+ .+.|++++..+.. ... .++ ..|.+..+ +.+
T Consensus 12 ~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~---------~~~-~~~------------~~~~~~~~~~~~~~ 69 (265)
T 2oz4_A 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---------TVT-YGN------------DSFSAKASVSVTAE 69 (265)
T ss_dssp CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC---------EEE-ECS------------SEEEEEEEEEECGG
T ss_pred CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc---------eEe-eCC------------CeEEEEeecccccc
Confidence 346889999999999997 6655 8999998865421 000 000 03444444 778
Q ss_pred CCeE--EEEEeEEcccceeeeEEEEEEecC--CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce
Q psy8823 107 DAGY--YRCQVIIGINNKISAEVDLQVRRP--PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182 (386)
Q Consensus 107 d~G~--Y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 182 (386)
|+|. |+|.+.+..+. .+..+.|.|... |.+.. ....+.+|+.++|.|.+. |.+.++| +|..+....
T Consensus 70 d~g~g~Y~C~a~n~~~~-~~~~~~l~V~~~p~p~~~~---~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~-- 139 (265)
T 2oz4_A 70 DEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVIL---TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG-- 139 (265)
T ss_dssp GCEEEEEEEEEEETTEE-EEEEEEEEEECCCCCEEEE---SCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS--
T ss_pred cCCcceEEEEEecCCCC-cEEEEEEEEeCCCCceeec---CCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC--
Confidence 8885 99999986543 456778888763 33332 234578899999999998 8899999 676653222
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCC-CCce--eeeEEEEEEecceEeeC--CCcccccCCCcEEEEEEEEecCCCee
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGV-GKGT--RRNIAVEVEFAPVITVP--KPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~--~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
....|.|..+..+|+|.|+|.+.|.. +... +..+.|.|.++|.+... +....+.+|+.+.|.|.+.|+|.|.+
T Consensus 140 --~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i 217 (265)
T 2oz4_A 140 --PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217 (265)
T ss_dssp --SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEE
T ss_pred --CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeE
Confidence 23568899999999999999998644 5422 36788899998887543 33556788999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 258 VWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.|++++.. ... .+.+ ..+..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 218 ~W~~~~~~--~~~----------------~g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 218 KCLKDGTF--PLP----------------IGES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp EEEETTTE--ECC----------------TTSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEECCcc--cCC----------------CCcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 99999872 111 1112 24788999999999999999999999998864
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=237.61 Aligned_cols=331 Identities=15% Similarity=0.202 Sum_probs=200.2
Q ss_pred eccceeeecCCcEEEEEEEeeCCC----CcEEEEecCCcccccccc-ccCCcee-E--EeccceeeecCCCcceEEEEEc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPLP-ISTGSSL-I--IRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.|....+.+|++|+|.|.+.+.+. ..+.|||+........+. ....... . ...+|+.+..+...++++|.|.
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR 85 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence 356677999999999999985432 569999974322111111 1111110 0 1235676665555667899999
Q ss_pred ccCCCCCeEEEEEeEEccc----------c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC
Q psy8823 102 DIQETDAGYYRCQVIIGIN----------N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT 164 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~ 164 (386)
+++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+.......|+.++|.|.+.+. |.
T Consensus 86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~ 165 (512)
T 1zvo_C 86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT 165 (512)
T ss_pred cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence 9999999999999986431 0 112345677763 33332111111101246889999999876 65
Q ss_pred C-eEEEEEcCeeeCC--------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee----------EEEEEEe-
Q psy8823 165 P-RISWRRENNAILP--------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN----------IAVEVEF- 224 (386)
Q Consensus 165 ~-~v~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~----------~~l~v~~- 224 (386)
+ .++|++++..... ..+.....+.|.|.+...+ .|.|+|.+.|..+...... ..+.+..
T Consensus 166 p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~p 244 (512)
T 1zvo_C 166 SVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQ 244 (512)
T ss_pred ceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCC
Confidence 4 8999996543210 0111223456889888877 8999999999876532111 1233322
Q ss_pred ---------------------------------------------------cceEee-CCCcccccCCCcEEEEEEEEec
Q psy8823 225 ---------------------------------------------------APVITV-PKPRLGQALQYDMDLECHVEAY 252 (386)
Q Consensus 225 ---------------------------------------------------~p~~~~-~~~~~~~~~g~~~~l~C~~~g~ 252 (386)
+|.+.+ ++....+.+|+.++|.|.+.|.
T Consensus 245 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~ 324 (512)
T 1zvo_C 245 PQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGS 324 (512)
T ss_pred CchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEece
Confidence 233322 2222345679999999999986
Q ss_pred CCC--eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE-ec--C
Q psy8823 253 PPP--AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES-II--P 326 (386)
Q Consensus 253 p~~--~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~-~~--p 326 (386)
+++ .++|++++.. +...... ......+..+...+.|.|..+..+|+|.|+|.|.|..+... ...+... .. +
T Consensus 325 ~P~~~~i~W~k~g~~--~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~ 401 (512)
T 1zvo_C 325 DLKDAHLTWEVAGKV--PTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAP 401 (512)
T ss_pred ECCCeEEEEEECCEe--ccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCC
Confidence 443 8999999987 3211110 01111112223457899999999999999999999987654 2222221 11 1
Q ss_pred CCCCC--CCCceeecCccee-eeEEecC-CC----CCcccccceeeec
Q psy8823 327 VCPPQ--TQPSELLPLRNVN-MAVIFAE-QP----TSWEPQRKQLNCS 366 (386)
Q Consensus 327 ~~~~~--~~~~~~~~~~~~~-~~c~~~~-~p----~~W~~~~~~l~~~ 366 (386)
..|.. ..+.. .++.+. |.|.+.| +| ++|.+||+.+...
T Consensus 402 ~~p~v~~~~~~~--~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~ 447 (512)
T 1zvo_C 402 VKLSLNLLASSD--PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTS 447 (512)
T ss_pred CCCEEEEEccCc--CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCc
Confidence 11110 11111 577889 9999987 34 4799999988643
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-31 Score=225.03 Aligned_cols=260 Identities=18% Similarity=0.284 Sum_probs=187.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+.. .+.++.... ...+.++|.|.+
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~-------------~~~~~~~~~-~~~~~~~L~i~~ 68 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA-------------DGLKYRIQE-FKGGYHQLIIAS 68 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCC-------------CSSSEEEEE-ETTTEEEEEESS
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEccc-------------CCCeEEEEE-CCCCEEEEEEcc
Confidence 578899989999999999999999999888899999998865421 111222211 123456899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecC----CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN----STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.|..+ ..+..+.|.|..+|.+... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 69 v~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~ 147 (305)
T 2nzi_A 69 VTDDDATVYQVRATNQGG-SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN 147 (305)
T ss_dssp CCGGGCSEEEEEEEETTE-EEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCS
T ss_pred CChhhCeEEEEEEEcCCC-CccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCC
Confidence 999999999999998744 3567788888776654322 12456788999999999999999999999999987765
Q ss_pred CCceEE----eeeEEEECC-CCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEE------
Q psy8823 179 TGGSIY----RGSILKIPQ-ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLEC------ 247 (386)
Q Consensus 179 ~~~~~~----~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C------ 247 (386)
...... ....|.|.+ +..+|.|.|+|.+.|..+. ....+.|.|...|...... ......+..+.|.|
T Consensus 148 ~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~p~~~-~~~~~~~~~v~l~w~~p~~~ 225 (305)
T 2nzi_A 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVADVPDPPRGV-KVSDVSRDSVNLTWTEPASD 225 (305)
T ss_dssp SSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEE-EEEEEEEEEEBCCCCCEEE-EEESCCSSCEEEEEECCSCC
T ss_pred CCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCc-eeeEEEEEEecCCCCCCCc-eeeeccCCEEEEEEcCCccC
Confidence 443332 246799999 9999999999999999887 5667888887655321110 01112234444444
Q ss_pred --------EEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 248 --------HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 248 --------~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
.+...+.+...|.+.+.. ....|.|.++...+.|.|+|.|.|..|....+..
T Consensus 226 g~~~i~~y~v~~~~~~~~~w~~~~~~--------------------~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~ 285 (305)
T 2nzi_A 226 GGSKITNYIVEKCATTAERWLRVGQA--------------------RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEP 285 (305)
T ss_dssp SBSCEEEEEEEEEETTSCCEEEEEEE--------------------SSSEEEECSCCSSCEEEEEEEEEETTEECCCCCC
T ss_pred CCCceeEEEEEEecCCCCccEECccc--------------------cCceEEecCCCCCCeEEEEEEEEeCCcccCCcCC
Confidence 444444444444433221 2557899999999999999999999998776543
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=230.47 Aligned_cols=225 Identities=16% Similarity=0.186 Sum_probs=174.7
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
..+.+|++++|.|.+.+.|.+.+.|++++... . .....|.|.+++.+|+|.|+|
T Consensus 106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------~------------~~~~~L~i~~v~~~d~G~Y~C 159 (363)
T 1wio_A 106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------------I------------QGGKTLSVSQLELQDSGTWTC 159 (363)
T ss_dssp SSEESBSCEEEEEECCTTCCCCEEEECSSSCE--------------E------------EESSEEEECSBCGGGCEECEE
T ss_pred eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc--------------c------------ccceEEEEeeCChhcCCEEEE
Confidence 45789999999999988888899999986432 0 012389999999999999999
Q ss_pred EeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-----eCCCeEEEEEcCeeeCCC--------C
Q psy8823 114 QVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-----HPTPRISWRRENNAILPT--------G 180 (386)
Q Consensus 114 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~--------~ 180 (386)
.+.+. .......+.+.|..+|... ....+.+|+.+.|.|.+.+ .|.+.++|++++..+... .
T Consensus 160 ~a~~~-~~~~~~~~~l~v~~~p~~~----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~ 234 (363)
T 1wio_A 160 TVLQN-QKKVEFKIDIVVLAFQKAS----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNK 234 (363)
T ss_dssp EEEET-TEEEEECCEECEECCSCSE----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSS
T ss_pred EEecC-CCeEEEEEEEEEecCCCCC----CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCC
Confidence 99875 3444556677776555432 4567889999999998877 778899999999876552 2
Q ss_pred ceEE------------e--eeEEEECCCCCCCCeEEEEEEecC--CCCceeeeEEEEEEecceEeeCCCcccccCCCcEE
Q psy8823 181 GSIY------------R--GSILKIPQITKEDRGTYYCVAENG--VGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMD 244 (386)
Q Consensus 181 ~~~~------------~--~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~ 244 (386)
.... . ...|.|.+++.+|+|.|+|.+.|. .+. .+..+.|.|... .|+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~-~~~~~~l~V~~v-------------~g~~~~ 300 (363)
T 1wio_A 235 EVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVMRA-------------TQLQKN 300 (363)
T ss_dssp CEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCC-EEEEEEEEEEEE-------------CCCSSS
T ss_pred eeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCe-EEEEEeEEEEEe-------------cCCCee
Confidence 2211 1 338999999999999999999999 775 667777777621 188899
Q ss_pred EEEEEEecCCCe--eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 245 LECHVEAYPPPA--IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 245 l~C~~~g~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|.|.+.|.|+|. +.|++++.. +.. ...|.|.++..+|+|.|+|.|.|. |....+..|.|
T Consensus 301 l~C~~~g~p~p~~~i~W~~~~~~--~~~----------------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 301 LTCEVWGPTSPKLMLSLKLENKE--AKV----------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp EEEEEESSCCTTCCEEEECSSSS--CSE----------------EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred EEEEEccccCCCccEEEEeCCCc--eee----------------eeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence 999999999987 999999976 321 344678999999999999999965 55566666655
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=224.75 Aligned_cols=281 Identities=15% Similarity=0.238 Sum_probs=176.7
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++++|.|.+.+.+ .+.+.|+|+........+ ... .+..... ..+|+.+..+...++++|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (344)
T 1za6_B 6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS 85 (344)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence 35566789999999999998763 577999997422111000 000 0110000 1345655544445678999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcCeee
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRRENNAI 176 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~ 176 (386)
++.+|+|.|+|.+.+.. ........|.|.. +|.+....+. ..+.+|+.++|.|.+.|. |. +.++|++++..+
T Consensus 86 v~~~D~G~Y~C~~~n~~-~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~ 163 (344)
T 1za6_B 86 LRSEDTAVYFCTRSLNM-AYWGQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTS 163 (344)
T ss_dssp CCGGGCEEEEEEETTTT-CEECCCEEEEECSSCCBCCEEEEECCS-CTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCT
T ss_pred CCcccCEEEEEEEecCc-ceecCcEEEEEecCCCCCCeEEEcccc-ccccCCCcEEEEEEEeeEECCCeEEEEecCCccC
Confidence 99999999999997632 2333456777763 3333322111 124689999999999887 54 699999998653
Q ss_pred C--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEE----------------------EEEec
Q psy8823 177 L--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAV----------------------EVEFA 225 (386)
Q Consensus 177 ~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l----------------------~v~~~ 225 (386)
. .........+.|.|.++..+| |.|+|.+.|..+.. ....+.+ .+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (344)
T 1za6_B 164 GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPRE 242 (344)
T ss_dssp TEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBC
T ss_pred ceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcC
Confidence 1 111222234579999998878 99999999977642 1122211 12345
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
|.+....+......|..++|.|.+.|.++ +.+.|+++|.. +............+......+.|.|.....+|+|.|
T Consensus 243 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Y 320 (344)
T 1za6_B 243 PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQP--ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVF 320 (344)
T ss_dssp CEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSC--CCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEE
T ss_pred CEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeE--CCCcEecceEECCCCcEEEEEEEEEChHHccCCCeE
Confidence 66555443333345667999999999633 48999999987 332221111111111222345677877788889999
Q ss_pred EEEEEcCCCcee
Q psy8823 304 ICRAANKLGTSE 315 (386)
Q Consensus 304 ~C~a~n~~g~~~ 315 (386)
+|.|.|......
T Consensus 321 tC~a~~~~l~~~ 332 (344)
T 1za6_B 321 SCSVMHEALHNH 332 (344)
T ss_dssp EEEEECTTSTTS
T ss_pred EEEEEcCCCCCC
Confidence 999999876533
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=220.22 Aligned_cols=236 Identities=17% Similarity=0.285 Sum_probs=183.4
Q ss_pred CceEEEeCCccEEEEEEeeeeC-CCeEEEEE-cCeeeCCCCceE-E-----eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-TPRISWRR-ENNAILPTGGSI-Y-----RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~-~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+....+.+|+.++|.|.+.+.+ .+.+.|++ ++..+....... . ....|.|.+++.+|+|.|+|.+.|..+..
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~ 88 (291)
T 1qz1_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ 88 (291)
T ss_dssp SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCE
T ss_pred CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCe
Confidence 3455788999999999998876 68999999 666665433221 1 24689999999999999999999988765
Q ss_pred eeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 214 TRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 214 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
.+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+......++... ....|.|.
T Consensus 89 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~ 160 (291)
T 1qz1_A 89 SEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--------SNNYLQIR 160 (291)
T ss_dssp EEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEEC--------TTSCEEET
T ss_pred eEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEc--------cCCcEEEc
Confidence 6778889998889888877778889999999999999999999999999987332222222211 24579999
Q ss_pred ecccCCCeEEEEEEEcCCCce--eeEEEEEEEecCCCCCCC--CCceeecCcceeeeEEecCCC---CCcccccceeeec
Q psy8823 294 TIEKRQYGSYICRAANKLGTS--EKTVELFESIIPVCPPQT--QPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCS 366 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~--~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~ 366 (386)
++..+|+|.|+|.|.|..+.. ...+.|.|..+|...... ....+..|+.++|.|.+.+.| ++|++++..+..+
T Consensus 161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~ 240 (291)
T 1qz1_A 161 GIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE 240 (291)
T ss_dssp TCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred cCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCC
Confidence 999999999999999986543 356677776666533322 234567889999999998877 6999999998876
Q ss_pred c----cc------eeeeeeeeecccccCC
Q psy8823 367 S----LL------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 367 ~----~~------~~~~i~~v~~~d~~~~ 385 (386)
. ++ ..|.|..++.+|+..|
T Consensus 241 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 269 (291)
T 1qz1_A 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEY 269 (291)
T ss_dssp --CCSSEEECTTSCEEEECSCCGGGCEEE
T ss_pred CCCCcceEEcCCCcEEEEEecChhcCEEE
Confidence 5 22 2699999999999765
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=230.91 Aligned_cols=279 Identities=17% Similarity=0.254 Sum_probs=180.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEee-CCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQY-AQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~-~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+....+.+|+.++|.|.+.+ .|.+ .|.|++++..+....... .......+..+. ....|.|.
T Consensus 116 ~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~--~~~~~~~~~~~~-------~~~~L~i~ 186 (438)
T 1qgc_4 116 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS--WTDQDSKDSTYS-------MSSTLTLT 186 (438)
T ss_dssp CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEE--EECCCTTTCCEE-------EEEEEEEE
T ss_pred CCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceec--cccccCCCCcEE-------EEEEEEEe
Confidence 566665444444457889999999986 5655 899999886542210000 000000011111 13489999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec--CCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEc--Cee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR--PPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRRE--NNA 175 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~ 175 (386)
+++.+|+|.|+|.+.|..+.. .+.+.+.. ++... ..+....+.+|+.++|.|.+.|.| .+.+.|+++ +..
T Consensus 187 ~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~-~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~ 262 (438)
T 1qgc_4 187 KDEYERHNSYTCEATHKTSTS---PIVKSFNRNECEVML-VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKR 262 (438)
T ss_dssp HHHHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEE-EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTE
T ss_pred CcccCCCCeEEEEEEecccCC---ceecccccccceeEE-ecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCC
Confidence 999999999999999865442 22333322 11111 123456788999999999999887 678999997 433
Q ss_pred eCC-----------------CCceEEe------eeEEEECCCCCCCCeEEEEEEecCCCC----ceeeeEEEEEE----e
Q psy8823 176 ILP-----------------TGGSIYR------GSILKIPQITKEDRGTYYCVAENGVGK----GTRRNIAVEVE----F 224 (386)
Q Consensus 176 ~~~-----------------~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~----~~~~~~~l~v~----~ 224 (386)
+.. ....... ...|.|.+++.+|+|.|+|.+.|..+. .......+.|. .
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~ 342 (438)
T 1qgc_4 263 LEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTT 342 (438)
T ss_dssp EEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCB
T ss_pred cEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCC
Confidence 210 1111111 348999999999999999999984331 12234566665 3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
+|.+....+...+.+|+.++|.|.+.|. |.+ .+.|++++..+........ . ........+.|.|.++..+| |.
T Consensus 343 ~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~--~--~~g~~~~~s~L~i~~~~~~d-g~ 417 (438)
T 1qgc_4 343 PPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV--L--QSDLYTLSSSVTVPSSTWPS-ET 417 (438)
T ss_dssp CCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCE--E--ETTEEEEEEEEEEEEEHHHH-SC
T ss_pred CCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCcc--c--cCCcEEEEEEEEEehhhcCC-ce
Confidence 5555544445567789999999999997 888 9999999876322111111 1 11122235679999999889 99
Q ss_pred EEEEEEcCCCceeeEEEE
Q psy8823 303 YICRAANKLGTSEKTVEL 320 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l 320 (386)
|+|.|.|..|.......+
T Consensus 418 Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 418 VTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp CEEEEEEGGGTEEEEEEC
T ss_pred EEEEEEeCCCCcceeeec
Confidence 999999999987766654
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-28 Score=215.79 Aligned_cols=299 Identities=17% Similarity=0.245 Sum_probs=203.4
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEec--CCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKV--DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.|.. +.+..+.+|++++|.|.+.+.|.+.|.|+++ +..+.... ...+.++....+ ..+++|.|.
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~---------~~~~~~~~~~~~--~~~~~L~i~ 68 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGD---------KSLDGRIEVKGQ--HGSSSLHIK 68 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC-----------CCSSSSEEEEEC--SSEEEEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCc---------CCCCCeEEEecc--CCcceEEEc
Confidence 356665 5667788999999999999999999999998 43321100 001234433322 346699999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+... .....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....
T Consensus 69 ~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~P~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~ 146 (389)
T 2jll_A 69 DVKLSDSGRYDCEAASRIGG-HQKSMYLDIEYAPKFISN-QTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNT 146 (389)
T ss_dssp SCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEECCS-CCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTC
T ss_pred ccChhhCEEEEEEEEeCCCC-cceEEEEEEEeCCEEecC-cceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccC
Confidence 99999999999999976554 477888999888877653 3445678999999999999999999999999988765431
Q ss_pred --eEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe----
Q psy8823 182 --SIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA---- 251 (386)
Q Consensus 182 --~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g---- 251 (386)
... ....|.|.++..+|.|.|+|.+.|..|. ....+.+.+...|..... .......+..+.|.|....
T Consensus 147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~P~~-~~~~~~~~~~~~l~w~~p~~~~g 224 (389)
T 2jll_A 147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGG 224 (389)
T ss_dssp TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEE-EEEEEEEEECCCCCCCEE-EEEEEECSSCEEEEEECCSCCTT
T ss_pred ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCc-EEEEEEEEecCCCCCCcc-eEEeeccCCEEEEEEeCCCCCCC
Confidence 111 2357999999999999999999999887 445566666544421100 0111223567888887422
Q ss_pred cCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 252 YPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 252 ~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|.. .+.|.+++..... ... .......+.|.++...+.|.|+|.|.|..|....+..+.+...+..+
T Consensus 225 ~pi~~y~v~~~~~~~~~~~------~~~-----~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~ 293 (389)
T 2jll_A 225 VPIHHYQVDVKEVASEIWK------IVR-----SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVRE 293 (389)
T ss_dssp SCEEEEEEEEEETTCSCCE------EEE-----CSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCC
T ss_pred cceEEEEEEEEECCCcccE------Eee-----ccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCC
Confidence 1222 4677776543110 000 01134679999999999999999999999987766556566555434
Q ss_pred CCCCCceee--cCcceeeeEEe
Q psy8823 330 PQTQPSELL--PLRNVNMAVIF 349 (386)
Q Consensus 330 ~~~~~~~~~--~~~~~~~~c~~ 349 (386)
+..+..... ....+.+.+..
T Consensus 294 p~~p~~~~~~~~~~~v~l~W~~ 315 (389)
T 2jll_A 294 PSPPSIHGQPSSGKSFKLSITK 315 (389)
T ss_dssp CCCCCEEEEEETTTEEEEEECC
T ss_pred CCCCccccccCcCCEEEEEEEC
Confidence 433333222 34456666654
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=216.33 Aligned_cols=243 Identities=22% Similarity=0.398 Sum_probs=174.5
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-----eeeEEEECCCCC-CCCeEEEEEE
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQITK-EDRGTYYCVA 206 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~-~d~g~y~C~~ 206 (386)
.+|.+... +....+.+|+.++|.|.+.|.|.+.+.|++++..+........ ....|.|.+++. +|+|.|+|.+
T Consensus 5 ~~P~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a 83 (304)
T 2yd9_A 5 EPPRFIKE-PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA 83 (304)
T ss_dssp CCCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred cCCeeeec-CCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence 45655544 4566789999999999999999999999999988754332221 126799999998 9999999999
Q ss_pred ecCCCCceeeeEEEEEEec-------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCce-eEEee
Q psy8823 207 ENGVGKGTRRNIAVEVEFA-------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQH-YSISH 278 (386)
Q Consensus 207 ~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~ 278 (386)
.|..+. .+..+.|.|... |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++.. +..... .....
T Consensus 84 ~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~--~~~~~~~~~~~~ 160 (304)
T 2yd9_A 84 QNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP--VDPSASNGRIKQ 160 (304)
T ss_dssp ECSSCE-ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEE--CCGGGGTTSEEE
T ss_pred ECCCCe-EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEE--CcCCCCcceEEe
Confidence 998887 567788888876 5666666667788899999999999999999999999987 332211 11100
Q ss_pred eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE-EEEEEEe---cCCCCCCCCCceeecCcceeeeEEecCCC-
Q psy8823 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT-VELFESI---IPVCPPQTQPSELLPLRNVNMAVIFAEQP- 353 (386)
Q Consensus 279 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~---~p~~~~~~~~~~~~~~~~~~~~c~~~~~p- 353 (386)
...+.|.|.++..+|+|.|+|.|.|..|..... ..+.|.. .|.....+....+..|+.++|.|.+.|.|
T Consensus 161 ------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~ 234 (304)
T 2yd9_A 161 ------LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPM 234 (304)
T ss_dssp ------CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESC
T ss_pred ------CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCC
Confidence 124589999999999999999999999977643 4555542 23222233445678899999999998877
Q ss_pred --CCcccccceeeecccce--eeeeeeeecccccCC
Q psy8823 354 --TSWEPQRKQLNCSSLLY--QCVLPLVDRQDRLMH 385 (386)
Q Consensus 354 --~~W~~~~~~l~~~~~~~--~~~i~~v~~~d~~~~ 385 (386)
++|++++..+..+.+.. .+.|.....+|++.|
T Consensus 235 p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~d~G~Y 270 (304)
T 2yd9_A 235 PYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANY 270 (304)
T ss_dssp CEEEEEETTEECSCSSSCCBSEEEEEECSCCSCEEE
T ss_pred CEEEEEECCEECCCcccccCCcEEEEEcccccCEEE
Confidence 69999999998765432 333333344677644
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=224.32 Aligned_cols=276 Identities=15% Similarity=0.205 Sum_probs=172.7
Q ss_pred cCCeeeeeccceeeecC--CcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 23 RTPTISYISQEQIKDIG--GTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G--~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
.+|.+.+.+.......| +.++|.|.+.+. | .+.|+|+|++..+..... .......++.+.. ...|
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~----~~~~~~~~g~~~~-------~s~l 74 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLS----TASTTQEGELAST-------QSEL 74 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGE----EEEEEEETTEEEE-------EEEE
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEccccee----cCCcCccCCcEEE-------EEEE
Confidence 45677766554443444 699999999875 3 468999998866532100 0000111222222 2368
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEE---ecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC---eEEEEE
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQV---RRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP---RISWRR 171 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~---~v~W~~ 171 (386)
.|.+...+|+|.|+|++.|..+. ....+.+.+ ...|.+....+....+.+|+.++|.|.+.+. |.+ .++|++
T Consensus 75 ~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k 153 (323)
T 2wqr_A 75 TLSQKHWLSDRTYTCQVTYQGHT-FEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSR 153 (323)
T ss_dssp EEEHHHHHTTCCEEEEEEETTEE-EEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEE
T ss_pred EEcHHHcCCCCcEEEEEEeCCCC-cceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEE
Confidence 89998889999999999976432 222222111 1123232233333346789999999999886 445 899999
Q ss_pred cCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE----EEecceEeeCCCccccc
Q psy8823 172 ENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE----VEFAPVITVPKPRLGQA 238 (386)
Q Consensus 172 ~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~ 238 (386)
+++...... ......+.|.|.++..+|+|.|+|.+.|.... ......+. +..+|.+...+......
T Consensus 154 ~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~~~~ 232 (323)
T 2wqr_A 154 ASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP-RALMRSTTKTSGPRAAPEVYAFATPEWPG 232 (323)
T ss_dssp TTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS-SCEEEEECCCCSCCBCCEEEEEECCCCTT
T ss_pred CCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCC-CCeeeEEEccCCCCCCCEEEEeCCChHHh
Confidence 754332211 11123457999999999999999999997643 22222332 23566655433322233
Q ss_pred CCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEE--eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 239 LQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSI--SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.|+.++|.|.+.|. |++ .+.|++++.. +........ ....+..+...+.|.|..+..+|+|.|+|.|.|..+.
T Consensus 233 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 233 SRDKRTLACLIQNFMPEDISVQWLHNEVQ--LPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp CTTEEEEEEEEEEEBSSCCEEEEEETTEE--CCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred cCCcEEEEEEeeeeeCCCcEEEEEECCEE--CCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 49999999999984 444 7999999987 433211110 0011112234578999999999999999999999877
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=215.16 Aligned_cols=235 Identities=17% Similarity=0.297 Sum_probs=180.1
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEE-cCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRR-ENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+....+.+|+.++|.|.+.+.|. .+.|++ ++..+......... ...|.|.+++.+|+|.|+|.+.|..+...+.
T Consensus 11 ~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~ 89 (291)
T 2wim_A 11 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 89 (291)
T ss_dssp CSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEE
T ss_pred ccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEE
Confidence 45667899999999999988764 899999 56555443333221 3589999999999999999999988875567
Q ss_pred eEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc
Q psy8823 217 NIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 217 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.+.+.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++.........++... ....|.|.++.
T Consensus 90 ~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~ 161 (291)
T 2wim_A 90 TVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML--------ANNNLQILNIN 161 (291)
T ss_dssp EEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEEC--------TTSCEEETTCC
T ss_pred EEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEc--------cCCCEEEEecc
Confidence 8888888888777666677788999999999999999999999999877332223333221 24579999999
Q ss_pred cCCCeEEEEEEEcCCCcee--eEEEEEEEecCCCCCCCC--CceeecCcceeeeEEecCCC---CCcccccceeeecccc
Q psy8823 297 KRQYGSYICRAANKLGTSE--KTVELFESIIPVCPPQTQ--PSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSLL 369 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~p~~~~~~~--~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~~ 369 (386)
.+|+|.|+|.|.|..+... ..+.+.+..+|....... ...+..|+.++|.|.+.+.| ++|+++|..+..+.++
T Consensus 162 ~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~ 241 (291)
T 2wim_A 162 KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241 (291)
T ss_dssp GGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTE
T ss_pred hhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccE
Confidence 9999999999999986543 456666766665433222 34566889999999998887 6999999998877654
Q ss_pred e------eeeeeeeecccccCC
Q psy8823 370 Y------QCVLPLVDRQDRLMH 385 (386)
Q Consensus 370 ~------~~~i~~v~~~d~~~~ 385 (386)
. .|.|..+..+|++.|
T Consensus 242 ~~~~~~~~L~i~~~~~~d~G~Y 263 (291)
T 2wim_A 242 ILKGSNTELTVRNIINSDGGPY 263 (291)
T ss_dssp EECSTTCEEEEESCCSTTCEEE
T ss_pred EEcCCccEEEEeeCCcccCEEE
Confidence 3 699999999999765
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=202.40 Aligned_cols=218 Identities=14% Similarity=0.150 Sum_probs=174.9
Q ss_pred ceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
....+.+|+.+.|.|.+.+.|.+ .+.|++++..+... ...|.|.+++.+|+|.|+|.+.|..+. ..+.+.
T Consensus 9 ~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~s---~~~~l~ 79 (262)
T 3rjd_A 9 PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITSASVNDSGEYRCQRGLSGRS---DPIQLE 79 (262)
T ss_dssp CCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC------SSEEEESSCCGGGCEEEEEEESSSCCC---CCEEEE
T ss_pred CcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc------CCeEEEecCCcccCeEEEEEEecCCcc---ccEEEE
Confidence 34568899999999999888877 89999999887543 456999999999999999999886543 467788
Q ss_pred EEecceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCC
Q psy8823 222 VEFAPVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 222 v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
|..++.... +....+.+|+.+.|.|.+ .+.|.+.+.|++++.. +... .....|.|.++..+|+
T Consensus 80 v~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~--~~~~-------------~~~~~l~i~~~~~~d~ 143 (262)
T 3rjd_A 80 IHRGWLLLQ-VSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKA--FKFF-------------HWNSNLTILKTNISHN 143 (262)
T ss_dssp EECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEE--EEEE-------------EECCCEEESSCCGGGC
T ss_pred EeccceEec-CCCeEEecCCeEEEEEEccCCCCCceEEEEECCcc--cccc-------------CCCCeEEEEECChhhC
Confidence 877665443 344567789999999999 6777789999999987 3211 1256799999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEecCCCCC--CCCCceeecCcceeeeEEecCCC--------CCcccccceeeecccce
Q psy8823 301 GSYICRAANKLGTSEKTVELFESIIPVCPP--QTQPSELLPLRNVNMAVIFAEQP--------TSWEPQRKQLNCSSLLY 370 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~--~~~~~~~~~~~~~~~~c~~~~~p--------~~W~~~~~~l~~~~~~~ 370 (386)
|.|+|.|.|..+.....+.|.|...+..+. ......+..|+.++|.|.+.+.| ++|++++..+.......
T Consensus 144 G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~ 223 (262)
T 3rjd_A 144 GTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS 223 (262)
T ss_dssp EEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEESCC
T ss_pred EEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCc
Confidence 999999999998888888998886433222 12345578899999999998875 37999999998777767
Q ss_pred eeeeeeeecccccCC
Q psy8823 371 QCVLPLVDRQDRLMH 385 (386)
Q Consensus 371 ~~~i~~v~~~d~~~~ 385 (386)
.|.|..++.+|++.|
T Consensus 224 ~L~i~~v~~~d~G~Y 238 (262)
T 3rjd_A 224 EYQILTARREDSGLY 238 (262)
T ss_dssp EEEESSCCGGGCEEE
T ss_pred eEEEEEechhhCeEE
Confidence 899999999999765
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=222.18 Aligned_cols=273 Identities=15% Similarity=0.169 Sum_probs=172.0
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC-CCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA-QDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+...+....+.+|+.++|.|.+.+. |.+ .|.|++++...... .... ....+.+.. ...|.|.
T Consensus 123 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~-----~~~~-~~~~~~~~~-------~s~L~i~ 189 (444)
T 1igt_B 123 APSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH-----TFPA-VLQSDLYTL-------SSSVTVT 189 (444)
T ss_dssp CCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEE-----ECCC-EEETTEEEE-------EEEEEEC
T ss_pred CCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeE-----ecCc-cccCCcEEE-------EEEEEEc
Confidence 3444443333345799999999999874 655 89999987642100 0000 011122222 2379999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEE------------------ecCCeeecCCCceEE-EeCCccEEEEEEeeee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQV------------------RRPPVISDNSTRSLV-VSEGQPVQLECFAGGH 162 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~~~~~~~~~-~~~g~~v~l~C~~~~~ 162 (386)
+++.+| |.|+|.+.|..+.. .....+.+ ..+|.+....+.... +.+|+.++|.|.+.|.
T Consensus 190 ~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~ 267 (444)
T 1igt_B 190 SSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDV 267 (444)
T ss_dssp STTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEE
T ss_pred hhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeec
Confidence 999999 99999999876543 12222221 113433222222212 4689999999999988
Q ss_pred C----CCeEEEEEcCeeeCCCCce---------EEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEE--EEEecc
Q psy8823 163 P----TPRISWRRENNAILPTGGS---------IYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAV--EVEFAP 226 (386)
Q Consensus 163 ~----~~~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l--~v~~~p 226 (386)
+ .+.++|++++..+...... ....+.|.|.++..+|+|.|+|.+.|..+.. ....+.+ .+..+|
T Consensus 268 ~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P 347 (444)
T 1igt_B 268 SEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAP 347 (444)
T ss_dssp CTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCC
T ss_pred ccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCC
Confidence 4 3589999999876533211 1234579999999999999999999987763 1233333 455677
Q ss_pred eEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 227 VITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
.+...+.......+..++|.|.+.| +|++ .+.|++++.. +............+......+.|.|.....+|+|.|+
T Consensus 348 ~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Yt 425 (444)
T 1igt_B 348 QVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKT--ELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYS 425 (444)
T ss_dssp EEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEE--CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEE
T ss_pred EEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEEECCEE--ccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEE
Confidence 7665444332233445999999998 5655 8999999987 3221111111111112223456788888888899999
Q ss_pred EEEEcCCCc
Q psy8823 305 CRAANKLGT 313 (386)
Q Consensus 305 C~a~n~~g~ 313 (386)
|.|.|....
T Consensus 426 C~a~n~~l~ 434 (444)
T 1igt_B 426 CSVVHEGLH 434 (444)
T ss_dssp EEEECTTSG
T ss_pred EEEECCCcC
Confidence 999998643
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=216.75 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=175.6
Q ss_pred eEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGH-PTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
...+.+|+.++|.|.+.+. |.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..+. ....+.|
T Consensus 15 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l 93 (317)
T 2y25_A 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKL 93 (317)
T ss_dssp EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCE-EEEEECC
T ss_pred eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCc-EEEEEEE
Confidence 4678899999999999877 7789999999988865443322 3468999999999999999999998776 3445555
Q ss_pred EEEecceEeeCCCcccccCCCcEEEEEEEEe----------cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEE
Q psy8823 221 EVEFAPVITVPKPRLGQALQYDMDLECHVEA----------YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTI 290 (386)
Q Consensus 221 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g----------~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 290 (386)
.|...|.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++.. +....++..... .....|
T Consensus 94 ~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~--~~~~~~~~~~~~-----~~~~~L 166 (317)
T 2y25_A 94 VDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVT-----GEQIWL 166 (317)
T ss_dssp STHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSB--CCCCSSEEEEEC-----SSEEEE
T ss_pred EEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEE--CCCCCCeEEecc-----CCEEEE
Confidence 5554443333333445667888888888877 78889999999988 544444433211 135679
Q ss_pred EEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe----------------cCCCCC-----CCCCceeecCcceeeeEEe
Q psy8823 291 RVITIEKRQYGSYICRAANKLGTSEKTVELFESI----------------IPVCPP-----QTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 291 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~----------------~p~~~~-----~~~~~~~~~~~~~~~~c~~ 349 (386)
.|.++..+|+|.|+|.|.|..|....++.+.+.. .+..++ .+....+..|+.++|.|.+
T Consensus 167 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~ 246 (317)
T 2y25_A 167 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246 (317)
T ss_dssp EEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE
T ss_pred EECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE
Confidence 9999999999999999999999998888876531 111111 1223567789999999999
Q ss_pred cCCC---CCcccccceeeecccc---------eeeeeeeeecccccCC
Q psy8823 350 AEQP---TSWEPQRKQLNCSSLL---------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 350 ~~~p---~~W~~~~~~l~~~~~~---------~~~~i~~v~~~d~~~~ 385 (386)
.+.| ++|++++..+..+.++ ..|.|..|+.+|++.|
T Consensus 247 ~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 294 (317)
T 2y25_A 247 WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKY 294 (317)
T ss_dssp ECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEE
T ss_pred ecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEE
Confidence 8888 7999999999776542 2799999999999765
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=213.07 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=170.7
Q ss_pred ceEEEeCCccEEEEEEeeee---------CCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCe-EEEEEEecCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGH---------PTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRG-TYYCVAENGVGK 212 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~ 212 (386)
..+.+.+|+.+.|.|.+.+. |.+.++|++++..+...... ..+..|.|.+++.+|+| .|+|.+.|..+.
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~ 115 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VKNGDLWIANYTSNDSHRRYLCTVTTKNGD 115 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EETTEEEESSCCGGGGGCCEEEEEECTTSC
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-eecceEEEcCCChHhCCCcEEEEEEeCCCc
Confidence 34568899999999999774 55789999999776543333 45778999999999999 999999998876
Q ss_pred ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecC-CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 213 GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYP-PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 213 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
.....+.+.+..+|.+........+.+|+.+.|.|.+.|.| .+.+.|++++..+.. ...++.. ....|.
T Consensus 116 ~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~-~~~~~~~---------~~~~L~ 185 (329)
T 3oq3_B 116 CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII-DGTKYSQ---------SGQNLI 185 (329)
T ss_dssp EEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCC-SSSSEEE---------ETTEEE
T ss_pred eeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCC-CCceEec---------CCCEEE
Confidence 33333334444455443333345567899999999999999 899999999988321 2222221 247899
Q ss_pred EeecccCCCeEEEEEEEcC--CCceeeE----EEEEEEecCCCCC---CCCCceeecCcceeeeEEecCCC-----C--C
Q psy8823 292 VITIEKRQYGSYICRAANK--LGTSEKT----VELFESIIPVCPP---QTQPSELLPLRNVNMAVIFAEQP-----T--S 355 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~--~g~~~~~----~~l~v~~~p~~~~---~~~~~~~~~~~~~~~~c~~~~~p-----~--~ 355 (386)
|.++..+|+|.|+|.|.|. .|..... +.|.|...|.... .+....+..|+.++|.|.+.+.| + .
T Consensus 186 I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~ 265 (329)
T 3oq3_B 186 IHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLID 265 (329)
T ss_dssp ECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEE
T ss_pred EeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEE
Confidence 9999999999999999998 6655444 6777776553211 23335677899999999998764 4 8
Q ss_pred cccccceeee-ccc------------ceeeeeeeeeccccc-CC
Q psy8823 356 WEPQRKQLNC-SSL------------LYQCVLPLVDRQDRL-MH 385 (386)
Q Consensus 356 W~~~~~~l~~-~~~------------~~~~~i~~v~~~d~~-~~ 385 (386)
|++++..+.. +.+ ...|.|..|+.+|++ .|
T Consensus 266 W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y 309 (329)
T 3oq3_B 266 WENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTY 309 (329)
T ss_dssp EECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEE
T ss_pred EEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcE
Confidence 9999998533 221 236999999999998 44
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=219.92 Aligned_cols=236 Identities=19% Similarity=0.289 Sum_probs=112.8
Q ss_pred CceEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH-PTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
+....+.+|+.++|.|.+.+. |.+.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|. +. ....+.|
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~-~~~~~~l 92 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QR-VLCHFSV 92 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-Ce-EEEEEEE
Confidence 456678899999999999876 56899999999887655554455778999999999999999999998 43 4566677
Q ss_pred EEEecce----------------------EeeC----CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCcee
Q psy8823 221 EVEFAPV----------------------ITVP----KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 221 ~v~~~p~----------------------~~~~----~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
.|...|. +..+ .....+.+|+.+.|.|.+.|.|.+.+.|++++.. +......
T Consensus 93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~ 170 (334)
T 1ry7_B 93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE--FRGEHRI 170 (334)
T ss_dssp --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBC--CCTTSST
T ss_pred EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEE--Ccccccc
Confidence 7765432 1111 1123566899999999999999999999999987 4333221
Q ss_pred EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC-----CCCceeecCcceeeeEEe
Q psy8823 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ-----TQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~-----~~~~~~~~~~~~~~~c~~ 349 (386)
.. .........|.|.++..+|+|.|+|.|.|..|....++.|.|...+..++. +....+..|+.++|.|.+
T Consensus 171 ~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~ 246 (334)
T 1ry7_B 171 GG----IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV 246 (334)
T ss_dssp TC----CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC
T ss_pred cc----eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE
Confidence 10 001123568999999999999999999999999999999999875443332 234567889999999999
Q ss_pred cCCC---CCccc----ccceeeecccc-----------------eeeeeeeeecccccCC
Q psy8823 350 AEQP---TSWEP----QRKQLNCSSLL-----------------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 350 ~~~p---~~W~~----~~~~l~~~~~~-----------------~~~~i~~v~~~d~~~~ 385 (386)
.+.| ++|++ ||..+..+... ..|.|..++.+|+..|
T Consensus 247 ~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 306 (334)
T 1ry7_B 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306 (334)
T ss_dssp BCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEE
T ss_pred ecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEE
Confidence 8888 69999 78777655431 1599999999999865
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=211.36 Aligned_cols=232 Identities=15% Similarity=0.147 Sum_probs=147.0
Q ss_pred CceEEEeCCccEEEEEEeeeeC-----------CCeEEEEEcCee------eC---CCCceEEeeeEEEECCCCCCCCeE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-----------TPRISWRRENNA------IL---PTGGSIYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-----------~~~v~W~~~~~~------~~---~~~~~~~~~~~l~i~~~~~~d~g~ 201 (386)
...+.+.+|+.+.|.|.+.+.| .+.+.|++++.. +. ........+..|.|.+++.+|+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence 4556788999999999998755 489999998842 11 112233456789999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecceEeeC----CCcccccCCCcEEEEEEE-----EecCCCeeEEEeCCeeeeeecCc
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPVITVP----KPRLGQALQYDMDLECHV-----EAYPPPAIVWIKEDTQQVLTNNQ 272 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~~g~~~~l~C~~-----~g~p~~~~~W~~~~~~~~~~~~~ 272 (386)
|+|.+.|..+. ....+.|.|..+|..... +....+.+|+.+.|.|.+ .|.|.+.+.|++++.. +....
T Consensus 94 Y~C~a~n~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~--l~~~~ 170 (349)
T 4dep_C 94 YTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYK--IQNFN 170 (349)
T ss_dssp EEEEEECSSCE-EEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEE--CCSCS
T ss_pred EEEEEecCCce-EEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEE--CCCcc
Confidence 99999998765 456777888776542221 223456789999999985 7789999999999987 43332
Q ss_pred eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC-Cce---eeEEEEEEEecC------CCCCCCCC--ceeecC
Q psy8823 273 HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL-GTS---EKTVELFESIIP------VCPPQTQP--SELLPL 340 (386)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~v~~~p------~~~~~~~~--~~~~~~ 340 (386)
.+.. ....|.|.++..+|+|.|+|.|.|.. |.. +..+.|.|...+ ........ ..+..|
T Consensus 171 ~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G 241 (349)
T 4dep_C 171 NVIP---------EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPG 241 (349)
T ss_dssp SEEE---------ETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-------------
T ss_pred ceee---------cCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecC
Confidence 2221 24679999999999999999999997 554 566777776532 11111111 167788
Q ss_pred cceeeeEEec----CCC---CCcccccceeee-cccc-----------------eeeeeeeeecccc-cCC
Q psy8823 341 RNVNMAVIFA----EQP---TSWEPQRKQLNC-SSLL-----------------YQCVLPLVDRQDR-LMH 385 (386)
Q Consensus 341 ~~~~~~c~~~----~~p---~~W~~~~~~l~~-~~~~-----------------~~~~i~~v~~~d~-~~~ 385 (386)
+.++|.|.+. +.| +.|++|+..+.. +.+. ..|.|..|+.+|+ +.|
T Consensus 242 ~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y 312 (349)
T 4dep_C 242 EELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSY 312 (349)
T ss_dssp ---CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------C
T ss_pred CcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcE
Confidence 9999999998 444 799999999877 2111 1399999999999 765
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=207.19 Aligned_cols=242 Identities=18% Similarity=0.261 Sum_probs=157.7
Q ss_pred CCCceEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeC----C-C----CceE---------EeeeEEEECCCCCCCCe
Q psy8823 140 NSTRSLVVSEGQPVQLECFAGGH-PTPRISWRRENNAIL----P-T----GGSI---------YRGSILKIPQITKEDRG 200 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~----~-~----~~~~---------~~~~~l~i~~~~~~d~g 200 (386)
..+..+.+.+|+++.|.|.+.+. |.+.+.|++++.... . . .... .....|.|.+++.+|+|
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G 87 (327)
T 2wng_A 8 QPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAG 87 (327)
T ss_dssp CCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCE
T ss_pred cCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCe
Confidence 34567789999999999999887 788999999875321 0 0 0111 23457999999999999
Q ss_pred EEEEEEecCCCCc----eeeeEEEEEEecceE-eeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCce
Q psy8823 201 TYYCVAENGVGKG----TRRNIAVEVEFAPVI-TVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 201 ~y~C~~~~~~~~~----~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~ 273 (386)
.|+|.+.|..+.. ......|.|..+|.. ....+...+.+|+.+.|.|.+.|.|++ .+.|++++.. +.....
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~--l~~~~~ 165 (327)
T 2wng_A 88 TYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNE--LSDFQT 165 (327)
T ss_dssp EEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEE--CCCEEE
T ss_pred EEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEE--cccccc
Confidence 9999999976531 123467777765532 122334667889999999999998876 8999999987 433222
Q ss_pred eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce---eeEEEEE--EEecCCCCCCCCCceeecCcceeeeEE
Q psy8823 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS---EKTVELF--ESIIPVCPPQTQPSELLPLRNVNMAVI 348 (386)
Q Consensus 274 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~--v~~~p~~~~~~~~~~~~~~~~~~~~c~ 348 (386)
..............+.|.|.....+|.|.|+|.|.|..+.. ..+..+. +..+|.... ....+..|+.++|.|.
T Consensus 166 ~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~--~~~~~~~G~~v~l~C~ 243 (327)
T 2wng_A 166 NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV--TQQPVRAENQVNVTCQ 243 (327)
T ss_dssp EEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEE--EEECCSSTTCCEEEEE
T ss_pred ccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEE--ecCCcCCCCcEEEEEE
Confidence 11111111222235568888888888999999999998763 3333332 222222111 1111568899999999
Q ss_pred ecCC-C----CCcccccceeeecccc-------------eeeeeeeeecccccCC
Q psy8823 349 FAEQ-P----TSWEPQRKQLNCSSLL-------------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 349 ~~~~-p----~~W~~~~~~l~~~~~~-------------~~~~i~~v~~~d~~~~ 385 (386)
+.+. | ++|++||+.+..+... ..|.|..+..+|+..|
T Consensus 244 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y 298 (327)
T 2wng_A 244 VRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKL 298 (327)
T ss_dssp EEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEE
T ss_pred EccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEE
Confidence 9873 2 6899999998754211 1488999999998765
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=201.39 Aligned_cols=230 Identities=14% Similarity=0.153 Sum_probs=172.7
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.+|.+.. .+....+.+|+.++|.|.+.+ .+.|++++..+ ......+..|.|.+++.+|+|.|+|.+.| +.
T Consensus 11 ~~P~i~~-~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~ 80 (290)
T 2o26_X 11 SPPSIHP-AQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN---EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL 80 (290)
T ss_dssp -CCEESS-CSSEEEEETTSCEEEEEECTT----EEEEEEECSSS---CEEEECSSEEEETTCCGGGCEEEEEEESS--SC
T ss_pred CCCEEeC-CCCeEEEcCCCcEEEEECCCC----cEEEecCCcce---eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc
Confidence 3455543 456778999999999999977 89999999876 11222347899999999999999999999 33
Q ss_pred ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCC-CeeEEE-eCCeeeeeecCceeEEeeeeecCceeeeEE
Q psy8823 213 GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPP-PAIVWI-KEDTQQVLTNNQHYSISHFATADEFTDTTI 290 (386)
Q Consensus 213 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 290 (386)
...+.|.|..+|.+........+.+|+.+.|.|.+.+ |. +.+.|+ +++.. +....++... ....|
T Consensus 81 --~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~--l~~~~~~~~~--------~~~~L 147 (290)
T 2o26_X 81 --TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKS--LPTDLTFVPN--------PKAGI 147 (290)
T ss_dssp --EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCC--CCTTCEEEEE--------TTTEE
T ss_pred --cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcC--CCCCCceeeC--------CCCCE
Confidence 6778888888887666666677889999999999985 77 899995 67766 4444433322 23579
Q ss_pred EEeecccCCCe-EEEEEEEcCCCcee-eEEEEEEEecCCCCC----CCCCceeecCcceeeeEEecCCC----CCccccc
Q psy8823 291 RVITIEKRQYG-SYICRAANKLGTSE-KTVELFESIIPVCPP----QTQPSELLPLRNVNMAVIFAEQP----TSWEPQR 360 (386)
Q Consensus 291 ~i~~~~~~d~G-~Y~C~a~n~~g~~~-~~~~l~v~~~p~~~~----~~~~~~~~~~~~~~~~c~~~~~p----~~W~~~~ 360 (386)
.|.++..+|+| .|+|.|.|..+... ..+.|.|...+..+| .+....+..|+.++|.|.+.+.| ++|++++
T Consensus 148 ~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~ 227 (290)
T 2o26_X 148 TIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMN 227 (290)
T ss_dssp EEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEES
T ss_pred EEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCC
Confidence 99999999999 99999999966543 357777764332222 23445778899999999998776 6799999
Q ss_pred cee----eec-----------ccceeeeeeeeecccccCC
Q psy8823 361 KQL----NCS-----------SLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 361 ~~l----~~~-----------~~~~~~~i~~v~~~d~~~~ 385 (386)
..+ ... .....|.|..|+.+|++.|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y 267 (290)
T 2o26_X 228 PQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVF 267 (290)
T ss_dssp SSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEE
T ss_pred CCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEE
Confidence 884 211 1122699999999999765
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=208.27 Aligned_cols=260 Identities=16% Similarity=0.196 Sum_probs=166.5
Q ss_pred ecCCcEEEEEEEeeC-CC-C-cEEEEecCCccccccccccCCceeE-EeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 37 DIGGTVELKCSVQYA-QD-Y-PVIWMKVDRNKVTEPLPISTGSSLI-IRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 37 ~~G~~v~L~C~~~~~-~~-~-~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
.+|+.++|.|.+.+. |. + .|.|++++..... ....... ..++.+.. ...|.|.++..+|+|.|+
T Consensus 139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~-----~~~~~~~~~~~g~~~~-------~s~L~i~~~~~~d~g~Y~ 206 (475)
T 1iga_A 139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTA-----RNFPPSQDASGDLYTT-------SSQLTLPATQCLAGKSVT 206 (475)
T ss_pred CCCCeEEEEEEEeeecCCCceEEEEcCCCcccce-----EeCCceecCCCCcEEE-------EEEEEechhHcCCCceEE
Confidence 689999999999976 54 3 8999987642210 0000000 01122222 236899999999999999
Q ss_pred EEeEEcccceeeeEEEEEEe------------------cCCeeecCCCceEEEeCCccEEEEEEeeeeCC---CeEEEEE
Q psy8823 113 CQVIIGINNKISAEVDLQVR------------------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPT---PRISWRR 171 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~------------------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~ 171 (386)
|.+.|..+...+..+.+.|. .+|.+....+....+.+|+.++|.|.+.|.++ +.++| +
T Consensus 207 C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~ 285 (475)
T 1iga_A 207 CHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T 285 (475)
T ss_pred EEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C
Confidence 99998765433444443331 13333222222223578999999999988754 58999 4
Q ss_pred cCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE---EEecceEeeCCCc-cccc
Q psy8823 172 ENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE---VEFAPVITVPKPR-LGQA 238 (386)
Q Consensus 172 ~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~---v~~~p~~~~~~~~-~~~~ 238 (386)
+..+.... +.....+.|.|.++..+|+|.|+|.+.|..+.. .....+. +..+|.+...+.. ..+.
T Consensus 286 -~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~P~v~~~~~~~~~v~ 363 (475)
T 1iga_A 286 -PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT-PLTATLSKSGNTFRPEVHLLPPPSEELA 363 (475)
T ss_pred -CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC-ceEEEeecCCCCCCCeEEEECCChHHhc
Confidence 43332111 111234579999999999999999999987763 2222342 3567776554433 3467
Q ss_pred CCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEE--eee---eecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 239 LQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSI--SHF---ATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.|+.+.|.|.+.|.++ +.+.|+++|.. +........ ... .+......+.|.|.....+|+|.|+|.|.|..
T Consensus 364 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~ 441 (475)
T 1iga_A 364 LNELVTLTCLARGFSPKDVLVRWLQGSQE--LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA 441 (475)
T ss_pred cCCceEEEEEEeeeECCCCEEEEEECCEE--CCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCC
Confidence 8999999999998643 48999999987 433321111 111 11122245678888888899999999999987
Q ss_pred Cc
Q psy8823 312 GT 313 (386)
Q Consensus 312 g~ 313 (386)
..
T Consensus 442 l~ 443 (475)
T 1iga_A 442 LP 443 (475)
T ss_pred CC
Confidence 54
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=203.33 Aligned_cols=235 Identities=12% Similarity=0.152 Sum_probs=172.6
Q ss_pred ceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 143 RSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
..+.+.+|+.+.|.|.. .+.|.+.+.|++++..+......... ...|.|.+++.+|+|.|+|.+.|..+... .
T Consensus 9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~--s 86 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS--S 86 (312)
T ss_dssp CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE--E
T ss_pred eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE--E
Confidence 35678899999999988 46788999999999988765544332 26899999999999999999999877532 4
Q ss_pred EEEEEEe------------cceEeeCCC-cccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecC
Q psy8823 218 IAVEVEF------------APVITVPKP-RLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283 (386)
Q Consensus 218 ~~l~v~~------------~p~~~~~~~-~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 283 (386)
+.+.|.. +|.+..... ...+.+|+.+.|.|.+. +.|.+.+.|++++.. +....++.+....
T Consensus 87 ~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~--i~~~~~~~~~~~~--- 161 (312)
T 2y23_A 87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDR--- 161 (312)
T ss_dssp EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEE--ECSSSSCEEEEET---
T ss_pred EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEE--CeeCCcEEEEEcc---
Confidence 5555543 454443332 66788999999999998 889999999999988 5555544433211
Q ss_pred ceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE-------------------EecCCCCCCCCCceeecCccee
Q psy8823 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE-------------------SIIPVCPPQTQPSELLPLRNVN 344 (386)
Q Consensus 284 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v-------------------~~~p~~~~~~~~~~~~~~~~~~ 344 (386)
......|.|.++..+|+|.|+|.|.|..+.....+.+.. ...|... ......+..|+.+.
T Consensus 162 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~v~~G~~~~ 240 (312)
T 2y23_A 162 NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV-EYLSWEVTGECNVL 240 (312)
T ss_dssp TTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEE-EEEEEEEETTTEEE
T ss_pred CCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCcee-ecceEEEeCCCEEE
Confidence 113466999999999999999999876555544444310 0001100 01124677899999
Q ss_pred eeEEecCCC----CCcccccceeeecccc------eeeeeeeeecccccCC
Q psy8823 345 MAVIFAEQP----TSWEPQRKQLNCSSLL------YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 345 ~~c~~~~~p----~~W~~~~~~l~~~~~~------~~~~i~~v~~~d~~~~ 385 (386)
|.|.+.+.| ++|++|+..+..+.++ ..|.|..|+.+|++.|
T Consensus 241 l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y 291 (312)
T 2y23_A 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIY 291 (312)
T ss_dssp EEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEE
T ss_pred EEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEE
Confidence 999998866 5899999999866554 2799999999999865
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=214.60 Aligned_cols=275 Identities=13% Similarity=0.184 Sum_probs=164.1
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC-CC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA-QD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+...+....+.+|+.++|.|.+.+. |. +.|.|++++..+.... .......++.+. ....|.|.
T Consensus 132 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~-----~~~~~~~~~~~~-------~~s~L~i~ 199 (457)
T 1hzh_H 132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHT-----FPAVLQSSGLYS-------LSSVVTVP 199 (457)
T ss_dssp CCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEE-----EEEEECTTSCEE-------EEEEEEEC
T ss_pred CCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceE-----cCceECCCCCEE-------EEEEEEec
Confidence 4555554444456799999999999876 54 7899999885431100 000001112222 12479999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe-----------------cCCeeecCCCceE-EEeCCccEEEEEEeeeeC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR-----------------RPPVISDNSTRSL-VVSEGQPVQLECFAGGHP 163 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-----------------~~p~~~~~~~~~~-~~~~g~~v~l~C~~~~~~ 163 (386)
+++.+| |.|+|.+.|..+.. .....+.+. .+|.+....+... .+.+|+.++|.|.+.|.+
T Consensus 200 ~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~ 277 (457)
T 1hzh_H 200 SSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVS 277 (457)
T ss_dssp SGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCC
T ss_pred ccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEccc
Confidence 999999 99999999865432 222222221 1233211111111 145799999999999875
Q ss_pred CC----eEEEEEcCeeeCCCCceE---EeeeEEEEC---CCCCCC---CeEEEEEEecCCCCc-eeeeEEE--EEEecce
Q psy8823 164 TP----RISWRRENNAILPTGGSI---YRGSILKIP---QITKED---RGTYYCVAENGVGKG-TRRNIAV--EVEFAPV 227 (386)
Q Consensus 164 ~~----~v~W~~~~~~~~~~~~~~---~~~~~l~i~---~~~~~d---~g~y~C~~~~~~~~~-~~~~~~l--~v~~~p~ 227 (386)
++ .++|++++..+....... ..++.+.+. .+...| +|.|+|.+.|..+.. ....+.+ .+..+|.
T Consensus 278 p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~ 357 (457)
T 1hzh_H 278 HEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ 357 (457)
T ss_dssp TTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCE
T ss_pred CCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCe
Confidence 53 899999998775332111 111222222 123444 999999999865442 1222222 3456777
Q ss_pred EeeCCCc-ccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 228 ITVPKPR-LGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 228 ~~~~~~~-~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+...+.. ..+..|+ +.|.|.+.|.+++ .+.|+++|.. +............+......+.|.+.....+|+|.|+
T Consensus 358 v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Yt 434 (457)
T 1hzh_H 358 VYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQP--ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFS 434 (457)
T ss_dssp EEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEE--CCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred EEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEE--CcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEE
Confidence 6654433 3344555 9999999997554 8999999987 4322211111111112223456777777778999999
Q ss_pred EEEEcCCCcee
Q psy8823 305 CRAANKLGTSE 315 (386)
Q Consensus 305 C~a~n~~g~~~ 315 (386)
|.|.|......
T Consensus 435 C~a~n~~l~~~ 445 (457)
T 1hzh_H 435 CSVMHEALHNH 445 (457)
T ss_dssp EEEECTTSGGG
T ss_pred EEEEECCCCCc
Confidence 99999875543
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=203.66 Aligned_cols=245 Identities=13% Similarity=0.185 Sum_probs=173.8
Q ss_pred CeeecCCCceEEEeCCccEEEEEEeeee----CCCeEEEEEcCee---------------e-CCC-CceE-----EeeeE
Q psy8823 135 PVISDNSTRSLVVSEGQPVQLECFAGGH----PTPRISWRRENNA---------------I-LPT-GGSI-----YRGSI 188 (386)
Q Consensus 135 p~~~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~~~~---------------~-~~~-~~~~-----~~~~~ 188 (386)
|......+..+.+.+|++++|.|.+.+. +.+.+.|++++.. . ... .+.. ....+
T Consensus 14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 93 (331)
T 3u83_A 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT 93 (331)
T ss_dssp -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence 3333344566789999999999999775 4457999995421 1 011 1111 12467
Q ss_pred EEECCCCCCCCeEEEEEEe-cCCCCceeeeEEEEEEecceEee--CCCcccccCC---CcEEEEEE-EEecCCCeeEEEe
Q psy8823 189 LKIPQITKEDRGTYYCVAE-NGVGKGTRRNIAVEVEFAPVITV--PKPRLGQALQ---YDMDLECH-VEAYPPPAIVWIK 261 (386)
Q Consensus 189 l~i~~~~~~d~g~y~C~~~-~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~g---~~~~l~C~-~~g~p~~~~~W~~ 261 (386)
|.|.+++.+|+|.|+|.+. +..+. ....+.|.|..+|.+.. ......+.+| +.+.|.|. +.+.|.+.+.|++
T Consensus 94 L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~ 172 (331)
T 3u83_A 94 IRLSRLELEDEGVYICEFATFPTGN-RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWET 172 (331)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEE
T ss_pred EEEcccCcccCcEEEEEEEecCCCc-cEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEc
Confidence 9999999999999999954 44443 66788899988887643 4455566777 77999998 8899999999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCC-CCCCceeecC
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP-QTQPSELLPL 340 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~-~~~~~~~~~~ 340 (386)
++....... ..............|.|.++..+|+|.|+|.|.|..|..+.++.|.|...|.... ......+..|
T Consensus 173 ~~~~~~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g 247 (331)
T 3u83_A 173 RLKGEAEYQ-----EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQR 247 (331)
T ss_dssp SSCCEEEEE-----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTC
T ss_pred CCCCccccc-----eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCC
Confidence 643311110 0011111122356799999999999999999999999999999999987775432 2233457788
Q ss_pred cceeeeEEecCCC----CCcccccceeeecccce--eeeee-eeecccccCC
Q psy8823 341 RNVNMAVIFAEQP----TSWEPQRKQLNCSSLLY--QCVLP-LVDRQDRLMH 385 (386)
Q Consensus 341 ~~~~~~c~~~~~p----~~W~~~~~~l~~~~~~~--~~~i~-~v~~~d~~~~ 385 (386)
+.++|.|.+.+.| ++|++++..+..+.... .|.|. +|..+|++.|
T Consensus 248 ~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y 299 (331)
T 3u83_A 248 MDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTY 299 (331)
T ss_dssp CCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEE
T ss_pred CeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEE
Confidence 9999999997776 68999999887654433 79999 9999999765
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-26 Score=179.36 Aligned_cols=180 Identities=22% Similarity=0.372 Sum_probs=143.1
Q ss_pred CCeeecCCCceEEEeC-CccEEEEEEeeeeCC--CeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 134 PPVISDNSTRSLVVSE-GQPVQLECFAGGHPT--PRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~-g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+|.+... ....+.+ |+.++|.|.+.+.+. +.+.|++++..+....... .+..|.|.+++.+|+|.|+|.+.|.
T Consensus 3 ~P~i~~~--~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~- 78 (190)
T 2wv3_A 3 EPRIVTS--EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-SNMEYRINKPRAEDSGEYHCVYHFV- 78 (190)
T ss_dssp CCEEEEC--CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-SEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred CCccccc--ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-ccEEEEEecCCcccCEEEEEEEEeC-
Confidence 4555442 2344556 999999999988876 7899999998876543322 5678999999999999999999998
Q ss_pred CCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEe--CCeeeeee-cCceeEEeeeeecCceee
Q psy8823 211 GKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIK--EDTQQVLT-NNQHYSISHFATADEFTD 287 (386)
Q Consensus 211 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ 287 (386)
+. ....+.|.|..+|.+...+....+..|+.+.|.|.+.|+|.|.+.|++ ++...... ...++.... ....
T Consensus 79 ~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~-----~~~~ 152 (190)
T 2wv3_A 79 SA-PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN-----KENY 152 (190)
T ss_dssp TE-EEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEE-----CSSE
T ss_pred Cc-ccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEec-----CCCe
Confidence 54 677889999999998877777788999999999999999999999999 66652221 233333221 1124
Q ss_pred eEEEEeecc-cCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 288 TTIRVITIE-KRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 288 ~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
+.|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus 153 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 153 TELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred eEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 589999999 799999999999999999999998875
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=202.59 Aligned_cols=240 Identities=15% Similarity=0.171 Sum_probs=172.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCC-----eEEEEEcCeeeC-------------CCCceE---------EeeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTP-----RISWRRENNAIL-------------PTGGSI---------YRGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~-----~v~W~~~~~~~~-------------~~~~~~---------~~~~~l~i~~~ 194 (386)
+..+.+..|++++|.|.+.+.+.+ .++|+|++.... ...... ..+.+|.|.++
T Consensus 7 P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v 86 (313)
T 4fqp_A 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL 86 (313)
T ss_dssp CSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSC
T ss_pred CCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcC
Confidence 345567789999999999876654 499999875321 111111 12357999999
Q ss_pred CCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCce
Q psy8823 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~ 273 (386)
+.+|+|.|+|.+.+......+..+.|.+..+|..........+..++.+.+.|.+. +.|.+.+.|++++.. +.....
T Consensus 87 ~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~--~~~~~~ 164 (313)
T 4fqp_A 87 RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG--MPNTSQ 164 (313)
T ss_dssp CGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCC--EEEEEE
T ss_pred ChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcc--ccccce
Confidence 99999999999865544445677788888888877766666777888999999875 789999999999887 332221
Q ss_pred eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee--EEEEEEEecCCCCC-CCCCceeecCcceeeeEEec
Q psy8823 274 YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK--TVELFESIIPVCPP-QTQPSELLPLRNVNMAVIFA 350 (386)
Q Consensus 274 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~~p~~~~-~~~~~~~~~~~~~~~~c~~~ 350 (386)
.. ..........+.|.|.++..+|+|.|+|.|.|..+.... ++.|.|..+|.... ......+..|+.++|.|.+.
T Consensus 165 ~~--~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~ 242 (313)
T 4fqp_A 165 VP--GFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242 (313)
T ss_dssp EE--CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEE
T ss_pred ee--eecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEec
Confidence 11 111122223567999999999999999999998876544 45555655554322 22334455678899999998
Q ss_pred CCC----CCcccccceeeecccce--eeeeeeeecccccCC
Q psy8823 351 EQP----TSWEPQRKQLNCSSLLY--QCVLPLVDRQDRLMH 385 (386)
Q Consensus 351 ~~p----~~W~~~~~~l~~~~~~~--~~~i~~v~~~d~~~~ 385 (386)
|+| ++|++++..+..+.... .|.|..|+.+|++.|
T Consensus 243 g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y 283 (313)
T 4fqp_A 243 SNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTL 283 (313)
T ss_dssp EESCCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEE
T ss_pred CCCCCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEE
Confidence 876 58999999987654432 799999999999765
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=200.51 Aligned_cols=246 Identities=11% Similarity=0.075 Sum_probs=163.6
Q ss_pred EEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEE
Q psy8823 127 VDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVA 206 (386)
Q Consensus 127 ~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 206 (386)
+...+..+|.+...+. ..+.+|++++|.|.+.+. .+.+.|+|++..+............|.|.+++.+|+|.|+|.+
T Consensus 17 ~~~~~~~~P~i~~~p~--~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 93 (316)
T 3vh8_G 17 SHMGGQDKPFLSAWPS--AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRG 93 (316)
T ss_dssp -------CCEEEEESC--SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEE
T ss_pred cccCCCCCCEeeccCC--CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEE
Confidence 3445556676665433 357899999999999877 6789999999875432222234668999999999999999999
Q ss_pred ecCCC----CceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeee
Q psy8823 207 ENGVG----KGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279 (386)
Q Consensus 207 ~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 279 (386)
.+... ...+..+.|.|.. +|.+...+.. .+.+|+.++|.|.+ ..+++.+.|++++... .......
T Consensus 94 ~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~-~~~~~~~~w~k~g~~~--~~~~~~~---- 165 (316)
T 3vh8_G 94 SHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP-LVKSGERVILQCWS-DIMFEHFFLHKEGISK--DPSRLVG---- 165 (316)
T ss_dssp BCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS-EEETTCCEEEEEEE-SSCCSEEEEEETTCCS--CCEEEEC----
T ss_pred EcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC-ccCCCCeEEEEEcC-CCCCcEEEEEECCCcc--ccceeee----
Confidence 86332 1234567777754 3445544333 37889999999999 4556789999998762 2111100
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-----eeEEEEEEEecCCCCCC--CCCceeecCcceeeeEEecCC
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-----EKTVELFESIIPVCPPQ--TQPSELLPLRNVNMAVIFAEQ 352 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~p~~~~~--~~~~~~~~~~~~~~~c~~~~~ 352 (386)
..........|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...+..|.. .+...+.+|+.++|.|.+...
T Consensus 166 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~ 245 (316)
T 3vh8_G 166 QIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSS 245 (316)
T ss_dssp EEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESSC
T ss_pred eecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCCC
Confidence 01112246789999999999999999999998752 45567777654332221 123357789999999999754
Q ss_pred C--CCcccccceeeeccc---------ceeeeeeeeecccccCC
Q psy8823 353 P--TSWEPQRKQLNCSSL---------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 353 p--~~W~~~~~~l~~~~~---------~~~~~i~~v~~~d~~~~ 385 (386)
+ +.|+++|..+..... ...|.|..|+ |++.|
T Consensus 246 ~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y 287 (316)
T 3vh8_G 246 YDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTY 287 (316)
T ss_dssp CSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEE
T ss_pred CcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEE
Confidence 4 689999998765322 1379999999 88765
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=181.55 Aligned_cols=181 Identities=27% Similarity=0.420 Sum_probs=144.2
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-e-----eeEEEECCCCCCCCeEEEEEEe
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-R-----GSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~-----~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
+|.+... +....+.+|+.++|.|.+.+.|.+.+.|++++..+........ . ...|.|.+++.+|+|.|+|.+.
T Consensus 4 ~P~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (197)
T 2j8h_A 4 APHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (197)
T ss_dssp CCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred CCEEEEc-CCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence 4444433 3557789999999999999999999999999988765432221 1 2389999999999999999999
Q ss_pred cCCCCceeeeEEEEEEecceEeeCC-----CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeec
Q psy8823 208 NGVGKGTRRNIAVEVEFAPVITVPK-----PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATA 282 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 282 (386)
|..+. ....+.|.|..+|.+..+. ....+.+|+.+.|.|.+.|+|.|.+.|++++.. +....++.....
T Consensus 83 n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~~~~~--- 156 (197)
T 2j8h_A 83 NQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL--IDNNGHYQVIVT--- 156 (197)
T ss_dssp ETTEE-EEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCE--ECSSSSCEEEEC---
T ss_pred ECCCc-eeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEE--eecCCCEEEEEc---
Confidence 98776 5678888888887765433 234567799999999999999999999999987 555544443221
Q ss_pred CceeeeEEEEee-cccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 283 DEFTDTTIRVIT-IEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 283 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.....|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 157 --~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 157 --RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp --SSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred --CCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 1357899999 99999999999999999999999998885
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-26 Score=180.76 Aligned_cols=173 Identities=24% Similarity=0.414 Sum_probs=140.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC--ceE--E--eeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG--GSI--Y--RGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~--~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+....+.+|+.++|.|.+.+.|.+.+.|++++..+.... ... . ....|.|.+++.+|+|.|+|.+.|..+. ..
T Consensus 12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~ 90 (194)
T 2a38_A 12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQ-AT 90 (194)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE-EE
T ss_pred CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCce-Ee
Confidence 345678999999999999999999999999998876543 111 1 2458999999999999999999998776 45
Q ss_pred eeEEEEEE---ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEE
Q psy8823 216 RNIAVEVE---FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292 (386)
Q Consensus 216 ~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 292 (386)
..+.+.|. .+|.+...+....+..|+.+.|.|.+.|+|.+.+.|++++.. +....++..... .....|.|
T Consensus 91 ~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~~~~~~-----~~~~~L~i 163 (194)
T 2a38_A 91 STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAE--IQSSLDFQISQE-----GDLYSLLI 163 (194)
T ss_dssp EEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEE--CCCSSSEEEEEE-----TTEEEEEE
T ss_pred EEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEE--CCCCCcEEEEEc-----CCEEEEEE
Confidence 56677776 567777677777888999999999999999999999999988 554444443221 12447999
Q ss_pred eecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 293 ITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 164 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 164 AEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp EEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 999999999999999999999999988877
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=182.28 Aligned_cols=175 Identities=28% Similarity=0.474 Sum_probs=144.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... ..+..|.|.+++.+|+|.|+|.+.|..+......+
T Consensus 14 ~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 93 (192)
T 2iep_A 14 LETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93 (192)
T ss_dssp CCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEE
T ss_pred ccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEE
Confidence 456778999999999999999999999999998876533222 13457999999999999999999998877566778
Q ss_pred EEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 219 AVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 219 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++.. +....++... ..+.|.|.++..+
T Consensus 94 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~--~~~~~~~~~~--------~~~~L~i~~~~~~ 163 (192)
T 2iep_A 94 ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSA--LRENSRIAVL--------ESGSLRIHNVQKE 163 (192)
T ss_dssp EEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEE--CCCCSSEEEC--------TTSCEEESSCCGG
T ss_pred EEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEE--ccCCCcEEEe--------cCCcEEEecCChh
Confidence 88999999888877777888999999999999999999999999987 5444443321 2457999999999
Q ss_pred CCeEEEEEEEcCCCcee-eEEEEEEEecC
Q psy8823 299 QYGSYICRAANKLGTSE-KTVELFESIIP 326 (386)
Q Consensus 299 d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p 326 (386)
|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus 164 d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 164 DAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred hCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 99999999999999884 56888887544
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=199.65 Aligned_cols=233 Identities=19% Similarity=0.332 Sum_probs=170.9
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEc--CeeeCCC-----CceEE----eeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRE--NNAILPT-----GGSIY----RGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~-----~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
....+.+|+.++|.|.+.|.|.+.++|+++ +..+... ..... ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 8 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 87 (389)
T 2jll_A 8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 87 (389)
T ss_dssp CCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred CceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCC
Confidence 345677899999999999999999999999 7766532 22222 246899999999999999999999988
Q ss_pred CceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 212 KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 212 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+......++.... ......|.
T Consensus 88 ~-~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~-----~~~~~~L~ 161 (389)
T 2jll_A 88 G-HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS-----TGRKMILE 161 (389)
T ss_dssp E-EEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEE-----CSSCEEEE
T ss_pred C-cceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEec-----cCCEEEEE
Confidence 7 57889999999998877655556788999999999999999999999999873222222332221 11356899
Q ss_pred EeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEec----CCC-----CCcccccce
Q psy8823 292 VITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIFA----EQP-----TSWEPQRKQ 362 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~~----~~p-----~~W~~~~~~ 362 (386)
|.++..+|+|.|+|.|.|..|....++.+.+...|.+|.... ........+.+.|..+ +.| +.|.+++..
T Consensus 162 i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~-~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~ 240 (389)
T 2jll_A 162 IAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASE 240 (389)
T ss_dssp ECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEE-EEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCS
T ss_pred ECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceE-EeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCc
Confidence 999999999999999999999999998888876665442211 1222345788888742 334 357776653
Q ss_pred ee----ecccceeeeeeeeecccc
Q psy8823 363 LN----CSSLLYQCVLPLVDRQDR 382 (386)
Q Consensus 363 l~----~~~~~~~~~i~~v~~~d~ 382 (386)
.. .......+.|..+...|.
T Consensus 241 ~~~~~~~~~~~~~~~i~~l~~~~~ 264 (389)
T 2jll_A 241 IWKIVRSHGVQTMVVLNNLEPNTT 264 (389)
T ss_dssp CCEEEECSTTCSEEEECSCCTTCE
T ss_pred ccEEeeccCCcceEEECCccCCCE
Confidence 22 222223577777766654
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=181.60 Aligned_cols=183 Identities=29% Similarity=0.494 Sum_probs=145.0
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EEe-----eeEEEECCCCC-CCCeEEEEEE
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-IYR-----GSILKIPQITK-EDRGTYYCVA 206 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~-----~~~l~i~~~~~-~d~g~y~C~~ 206 (386)
+|.+... +....+.+|+.++|.|.+.+.|.+.+.|++++..+...... ... ...|.|.+++. +|+|.|+|.+
T Consensus 6 pP~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~ 84 (212)
T 2yd1_A 6 PPEIIRK-PQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA 84 (212)
T ss_dssp CCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred CCEEEcC-CCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence 4555543 45567899999999999999999999999999887633222 111 25899999999 9999999999
Q ss_pred ecCCCCceeeeEEEEEEec-------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEee
Q psy8823 207 ENGVGKGTRRNIAVEVEFA-------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISH 278 (386)
Q Consensus 207 ~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~ 278 (386)
.|..+...+..+.|.|... |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++.. +.. ..++..
T Consensus 85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~~~-- 160 (212)
T 2yd1_A 85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTK--VDMSNPRYSL-- 160 (212)
T ss_dssp ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEE--CCTTSTTEEE--
T ss_pred EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeE--cccCCCeEEc--
Confidence 9988875677888888876 6666666667788899999999999999999999999987 433 222221
Q ss_pred eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE-EEEEEEecCCC
Q psy8823 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT-VELFESIIPVC 328 (386)
Q Consensus 279 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~p~~ 328 (386)
..+.|.|.++..+|+|.|+|.|.|..|..... +.|.|...+..
T Consensus 161 -------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~ 204 (212)
T 2yd1_A 161 -------KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204 (212)
T ss_dssp -------ETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C
T ss_pred -------cCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecccc
Confidence 24589999999999999999999999999765 89988876543
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-26 Score=194.39 Aligned_cols=206 Identities=26% Similarity=0.379 Sum_probs=156.8
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-E-----eeeEEEECCCCCCCCeEEEEEEe
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-Y-----RGSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~-----~~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
+|.+... +....+.+|+.++|.|.+.+.|.+.+.|++++..+....... . ....|.|.+++.+|+|.|+|.+.
T Consensus 4 ~P~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 4 APHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCEEEEC-CCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCeeeec-ccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 4544443 346789999999999999999999999999998876543221 1 12389999999999999999999
Q ss_pred cCCCCceeeeEEEEEEecceEeeCC-----CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeec
Q psy8823 208 NGVGKGTRRNIAVEVEFAPVITVPK-----PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATA 282 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 282 (386)
|..+. .+..+.|.|..+|.+..+. ....+..|+.+.|.|.+.|.|.+.+.|++++.. +....++.....
T Consensus 83 n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~~~~~--- 156 (305)
T 2nzi_A 83 NQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL--IDNNGHYQVIVT--- 156 (305)
T ss_dssp ETTEE-EEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSB--CCSSSSCEEEEC---
T ss_pred cCCCC-ccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEE--CCCCCcEEEEEc---
Confidence 98776 5678888888877765432 345577899999999999999999999999887 544444433211
Q ss_pred CceeeeEEEEee-cccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEe
Q psy8823 283 DEFTDTTIRVIT-IEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 283 ~~~~~~~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~ 349 (386)
.....|.|.+ +..+|.|.|+|.|.|..|..+.++.|.|...|.+|.... ........+.+.|..
T Consensus 157 --~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~-~~~~~~~~v~l~w~~ 221 (305)
T 2nzi_A 157 --RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK-VSDVSRDSVNLTWTE 221 (305)
T ss_dssp --SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEE-EESCCSSCEEEEEEC
T ss_pred --CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCce-eeeccCCEEEEEEcC
Confidence 1357899999 999999999999999999999999999998876554321 111234456666654
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=181.73 Aligned_cols=191 Identities=24% Similarity=0.452 Sum_probs=148.0
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
+..+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+.. ...++..... ..+..+|.|
T Consensus 3 g~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~-------------~~~~~~~~~~-~~~~~~L~i 68 (212)
T 2yd1_A 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG-------------TQSRYTVLEQ-PGGISILRI 68 (212)
T ss_dssp --CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCT-------------TSTTEEEEEE-TTTEEEEEE
T ss_pred CCCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCC-------------CcceeEEEEc-CCCeEEEEE
Confidence 34688999999999999999999999999888889999998765421 1222222211 223468999
Q ss_pred cccCC-CCCeEEEEEeEEcccceeeeEEEEEEecC-------CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc
Q psy8823 101 KDIQE-TDAGYYRCQVIIGINNKISAEVDLQVRRP-------PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE 172 (386)
Q Consensus 101 ~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~ 172 (386)
.+++. +|+|.|+|.+.+..+...+..+.|.|..+ |.+... +....+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus 69 ~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~ 147 (212)
T 2yd1_A 69 EPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQG-PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKN 147 (212)
T ss_dssp SSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEEC-CCCEEEETTCCEEECCEEECSSCCEEEEEET
T ss_pred EecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeC-CCceEeecCCeEEEEEEeccCCCCeEEEEEC
Confidence 99999 99999999999876665677888888765 444433 3456788999999999999999999999999
Q ss_pred CeeeCCCC-ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 173 NNAILPTG-GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 173 ~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
+..+.... ......+.|.|.+++.+|+|.|+|.+.|..|...+..+.|.|+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~ 202 (212)
T 2yd1_A 148 QTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202 (212)
T ss_dssp TEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred CeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence 98886543 3344566899999999999999999999998755556788887654
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=218.86 Aligned_cols=273 Identities=12% Similarity=0.176 Sum_probs=171.1
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC-CCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA-QDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+...+....+.+|+.++|.|.+.+. |.+ .|.|++++...... .... ...++.+.. ...|.|.
T Consensus 119 ~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~-----~~~~-~~~~~~~~~-------~s~L~i~ 185 (434)
T 1igy_B 119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH-----TFPA-VLQSDLYTL-------SSSVTVP 185 (434)
T ss_dssp CCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEE-----ECCC-EECSSCEEE-------EEEEEEE
T ss_pred CCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeE-----ecCc-eecCCcEEE-------EEEEEEc
Confidence 3445444433446799999999999875 555 89999987542100 0000 011122221 2379999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe----------cC--CeeecCCCceEE-EeCCccEEEEEEeeeeC----C
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR----------RP--PVISDNSTRSLV-VSEGQPVQLECFAGGHP----T 164 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----------~~--p~~~~~~~~~~~-~~~g~~v~l~C~~~~~~----~ 164 (386)
+++.+| |.|+|.+.|..+.. .....+.+. .+ |.+....+.... +.+|+.++|.|.+.|.+ .
T Consensus 186 ~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~ 263 (434)
T 1igy_B 186 SSPRPS-ETVTCNVAHPASST-KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPE 263 (434)
T ss_dssp TTTTTS-SCCEEEEECTTTTC-CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCC
T ss_pred chhcCC-CcEEEEEEeCCCCc-cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCC
Confidence 999989 99999999865542 112222111 00 222111121111 67899999999998874 3
Q ss_pred CeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEE--EEEecceEeeCC
Q psy8823 165 PRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAV--EVEFAPVITVPK 232 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~ 232 (386)
+.++|++++..+..... .....+.|.|.++..+|+|.|+|.+.|..+.. ....+.+ .+..+|.+...+
T Consensus 264 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~ 343 (434)
T 1igy_B 264 VQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIP 343 (434)
T ss_dssp CCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEEC
T ss_pred eEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEEC
Confidence 58999999877643211 11123569999999999999999999987752 2223332 445677665544
Q ss_pred CcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 233 PRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.......|+.++|.|.+.|. |++ .++|+++|.. +............+......+.|.|.....+|+|.|+|.|.|.
T Consensus 344 ~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~ 421 (434)
T 1igy_B 344 PPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQA--PENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE 421 (434)
T ss_dssp CCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSC--CSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEET
T ss_pred CCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEe--cCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcC
Confidence 44334467789999999995 433 8999999987 4322111111111112223467888888888999999999998
Q ss_pred CCc
Q psy8823 311 LGT 313 (386)
Q Consensus 311 ~g~ 313 (386)
...
T Consensus 422 ~l~ 424 (434)
T 1igy_B 422 GLH 424 (434)
T ss_dssp TSG
T ss_pred CCC
Confidence 754
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-27 Score=199.49 Aligned_cols=230 Identities=16% Similarity=0.178 Sum_probs=168.5
Q ss_pred CCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 140 NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
..+....+.+|+.++|.|.+.+ .+.|++++..... ......+..|.|.+++.+|+|.|+|.+.+..+. .+..+.
T Consensus 9 ~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~ 82 (289)
T 3ejj_X 9 PSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWT-LDPESPGSTLTTRNATFKNTGTYRCTELEDPMA-GSTTIH 82 (289)
T ss_dssp SCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSE-ECCCSSCCEEEESSCCGGGCEEEEEECCC------CEEEE
T ss_pred CCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEE-EeccCCccEEEEeeeccccCEEEEEEEeccCCc-ceeEEE
Confidence 3355678899999999999876 4999987643211 011123568999999999999999999987776 567788
Q ss_pred EEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCe-eEEEe-CCeeeeeecCceeEEeeeeecCceeeeEEEEeecc
Q psy8823 220 VEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPA-IVWIK-EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 220 l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
|.|..+|. +...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++.. +....++... ....|.|.++.
T Consensus 83 l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~--~~~~~~~~~~--------~~~~L~i~~v~ 152 (289)
T 3ejj_X 83 LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQ--VLRKTVYFFS--------PWRGFIIRKAK 152 (289)
T ss_dssp EEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEE--CCTTCCEEEE--------TTTEEEESSCC
T ss_pred EEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCee--cCCCccEEEC--------CCCCEEEeecc
Confidence 88887776 45556677788999999999999877764 99986 4444 3333333322 24569999999
Q ss_pred cCCCeEEEEEEE-cCCCceeeEEEEEEEecCCCCC----CCCCceeecCcceeeeEEecC-CC---CCcccccceeeecc
Q psy8823 297 KRQYGSYICRAA-NKLGTSEKTVELFESIIPVCPP----QTQPSELLPLRNVNMAVIFAE-QP---TSWEPQRKQLNCSS 367 (386)
Q Consensus 297 ~~d~G~Y~C~a~-n~~g~~~~~~~l~v~~~p~~~~----~~~~~~~~~~~~~~~~c~~~~-~p---~~W~~~~~~l~~~~ 367 (386)
.+|+|.|+|.|. |..+..+..+.|.|...+..++ .+....+..|+.++|.|.+.+ .| ++|++++..+..+.
T Consensus 153 ~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~ 232 (289)
T 3ejj_X 153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL 232 (289)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCE
T ss_pred cccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccC
Confidence 999999999999 5566777788888875433232 223344568999999999987 45 68999999886543
Q ss_pred c----------ceeeeeeeeecccccCC
Q psy8823 368 L----------LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 368 ~----------~~~~~i~~v~~~d~~~~ 385 (386)
. ...|.|..|+.+|++.|
T Consensus 233 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 260 (289)
T 3ejj_X 233 NSDFQDNYYKKVRALSLNAVDFQDAGIY 260 (289)
T ss_dssp EEEECSSSEEEEEEEEESSCCSSSCEEE
T ss_pred CcccccceEEeeEEEEEEeecccCCEEE
Confidence 2 22799999999998765
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=178.16 Aligned_cols=186 Identities=23% Similarity=0.373 Sum_probs=140.2
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE-----eeeEEEECCC-CCCCCeEEEEEEe
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RGSILKIPQI-TKEDRGTYYCVAE 207 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~-~~~d~g~y~C~~~ 207 (386)
+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+........ .+..|.|.++ +.+|+|.|+|.+.
T Consensus 6 ~P~~~~~-p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~ 84 (212)
T 2yd6_A 6 PPRFTRT-PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVAS 84 (212)
T ss_dssp EEEEEEC-CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEE
T ss_pred CCeEEeC-cceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEE
Confidence 4444433 3456788999999999999999999999999988765443322 2457999999 5999999999999
Q ss_pred cCCCCceeeeEEEEEEec-------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeee
Q psy8823 208 NGVGKGTRRNIAVEVEFA-------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHF 279 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~ 279 (386)
|..+. ....+.|.|... |.+...+....+..|+.+.|.|.+.|+|.+.+.|++++..+.... ..++....
T Consensus 85 n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~- 162 (212)
T 2yd6_A 85 NNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR- 162 (212)
T ss_dssp ETTEE-EEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE-
T ss_pred cCCCc-EEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe-
Confidence 98876 566788888765 556666666677889999999999999999999999998732221 12222111
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee-EEEEEEEecC
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK-TVELFESIIP 326 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p 326 (386)
......|.|.++..+|+|.|+|.|.|..|.... .+.|.+...|
T Consensus 163 ----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~ 206 (212)
T 2yd6_A 163 ----SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206 (212)
T ss_dssp ----ETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred ----cCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence 013578999999999999999999999998764 5666665443
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=177.50 Aligned_cols=183 Identities=20% Similarity=0.353 Sum_probs=142.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcc-----eEE
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASS-----TYT 97 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 97 (386)
+|.|...|....+.+|++++|.|.+. +.+.+.+.|++++..+... ...++......... +.+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~ 69 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELA------------DSTQTQVPLGEDEQDDWIVVSQ 69 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSC------------EEEEEEEECSSSTTSEEEEEEE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccC------------CCCceEEEEccccccceeeccE
Confidence 57788889999999999999999999 8888899999988654211 00122222221111 468
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeee
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAI 176 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~ 176 (386)
|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+
T Consensus 70 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~ 148 (195)
T 2c5d_C 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEE-PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL 148 (195)
T ss_dssp EEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEEC-CCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBS
T ss_pred EEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcC-CCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEec
Confidence 9999999999999999999876555556688999988877654 344678899999999999999999 99999999887
Q ss_pred CCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 177 LPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 177 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
...... .....|.|.+++ |+|.|+|.+.|..|...+..+.|.|
T Consensus 149 ~~~~~~-~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 149 ATAPGH-GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp SSSTTS-SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cCCCCc-CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 654432 456679999987 7899999999998874456777777
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=176.84 Aligned_cols=182 Identities=21% Similarity=0.377 Sum_probs=144.2
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecC
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+|.+... +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+......... ...|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~P~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 85 (197)
T 3lcy_A 7 APGIRKE-MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNE 85 (197)
T ss_dssp EEEEEEC-CCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECS
T ss_pred CCccccc-CCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECC
Confidence 3444333 34667899999999999999999999999999988665543332 237999999999999999999988
Q ss_pred CCCceeeeEEEEEEecceEeeC---CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 210 VGKGTRRNIAVEVEFAPVITVP---KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 210 ~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
.+. ....+.+.|..+|.+... .....+..|+.+.|.|.+.|+|.|.+.|++++.. +....++..... ..
T Consensus 86 ~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~--~~~~~~~~~~~~-----~~ 157 (197)
T 3lcy_A 86 VGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKL--LQNSENITIENT-----EH 157 (197)
T ss_dssp SCE-EEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEEEEEC-----SS
T ss_pred CCc-eeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEE--CCCCCceEEEEc-----CC
Confidence 776 566778888887766532 2334567899999999999999999999999988 555544443221 13
Q ss_pred eeEEEEeeccc-CCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 287 DTTIRVITIEK-RQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 287 ~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
...|.|.++.. +|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 158 ~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 47899999985 899999999999999999999998864
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=177.71 Aligned_cols=167 Identities=19% Similarity=0.317 Sum_probs=139.1
Q ss_pred CceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCc--eEEe-----------eeEEEECCCCCCCCeEEEEEEe
Q psy8823 142 TRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGG--SIYR-----------GSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~--~~~~-----------~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
+....+.+|+.++|.|.+. +.|.+.+.|++++..+..... .... ...|.|.+++.+|+|.|+|.+.
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 88 (195)
T 2c5d_C 9 PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF 88 (195)
T ss_dssp CCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEE
T ss_pred hhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEE
Confidence 4567889999999999998 999999999999988765532 1111 4689999999999999999999
Q ss_pred cCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 208 NGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
+..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++.. +...... ..
T Consensus 89 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~--~~~~~~~----------~~ 156 (195)
T 2c5d_C 89 LGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVP--LATAPGH----------GP 156 (195)
T ss_dssp ETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCB--SSSSTTS----------SC
T ss_pred eCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEe--ccCCCCc----------CC
Confidence 987765556689999999988887777888899999999999999999 9999999987 4332221 24
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCcee-eEEEEEE
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFE 322 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v 322 (386)
...|.|.+++ |+|.|+|.|.|..|... .++.|.|
T Consensus 157 ~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 157 QRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp CEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 6789999987 78999999999999986 7888888
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=179.71 Aligned_cols=190 Identities=22% Similarity=0.350 Sum_probs=142.0
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. .+.............|.|.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~---------------~~~~~~~~~~~~~~~L~i~ 68 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN---------------QRFEVIEFDDGSGSVLRIQ 68 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC---------------TTEEEEEEGGGTEEEEEEC
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCC---------------CceeEEEEcCCCceEEEEe
Confidence 4578899989999999999999999999888899999998865421 1111111111234589999
Q ss_pred cc-CCCCCeEEEEEeEEcccceeeeEEEEEEecC-------CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC
Q psy8823 102 DI-QETDAGYYRCQVIIGINNKISAEVDLQVRRP-------PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRREN 173 (386)
Q Consensus 102 ~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~ 173 (386)
++ +.+|+|.|+|.+.+..+. .+..+.|.|... |.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++
T Consensus 69 ~v~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g 146 (212)
T 2yd6_A 69 PLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMG-PQLKVVERTRTATMLCAASGNPDPEITWFKDF 146 (212)
T ss_dssp SCCTTTTCEEEEEEEEETTEE-EEEEEEEEEECGGGCCTTCCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEEETT
T ss_pred ccCCCCCCeEEEEEEEcCCCc-EEEEEEEEEeccCccCCCcceeecC-CcceeEecCCCEEEEEEecCCCCCeEEEEECC
Confidence 99 599999999999976543 466777888654 333332 34457889999999999999999999999999
Q ss_pred eeeCCCC---ceE-E---eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceE
Q psy8823 174 NAILPTG---GSI-Y---RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 174 ~~~~~~~---~~~-~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~ 228 (386)
..+.... ... . ....|.|.+++.+|+|.|+|.+.|..|...+....+.|..+|..
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~ 208 (212)
T 2yd6_A 147 LPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH 208 (212)
T ss_dssp EEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred ccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence 8876542 111 1 14789999999999999999999999987777888888776653
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-27 Score=203.82 Aligned_cols=234 Identities=16% Similarity=0.181 Sum_probs=174.7
Q ss_pred CceEEEeCCccEEEEEEee-------eeCCCeEEEEEcCeee--CCC--CceEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 142 TRSLVVSEGQPVQLECFAG-------GHPTPRISWRRENNAI--LPT--GGSIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~-------~~~~~~v~W~~~~~~~--~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+....+.+|+.+.|.|.+. +.|.+.+.|++++..+ ... ......+..|.|.+++.+|+|.|+|.+.|..
T Consensus 25 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~ 104 (339)
T 3o4o_C 25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNAS 104 (339)
T ss_dssp SCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETT
T ss_pred ceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCc
Confidence 4567889999999999997 8888999999999874 222 1233456789999999999999999999987
Q ss_pred CCceeeeEEEEEEecceEe--eCCCcccccCCCcEEEEEE-----EEecCCCeeEEEeCCeeeeeecC-ceeEEeeeeec
Q psy8823 211 GKGTRRNIAVEVEFAPVIT--VPKPRLGQALQYDMDLECH-----VEAYPPPAIVWIKEDTQQVLTNN-QHYSISHFATA 282 (386)
Q Consensus 211 ~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~-----~~g~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~ 282 (386)
+. ....+.|.|..+|... .......+.+|+.+.|.|. +.|.|.+.+.|++++.. +... .++...
T Consensus 105 g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~--~~~~~~~~~~~----- 176 (339)
T 3o4o_C 105 YC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLL--LDKDNEKFLSV----- 176 (339)
T ss_dssp EE-EEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCB--CCTTCSSEEEC-----
T ss_pred ce-EEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCee--CCCCCceeEEc-----
Confidence 75 5677788887765422 1122235678999999999 78899999999999887 4332 222221
Q ss_pred CceeeeEEEEeecccCCCeEEEEEEEcCCC----ceeeEEEEEEEecCC-----CCCCCCCceeecCcceeeeEEe---c
Q psy8823 283 DEFTDTTIRVITIEKRQYGSYICRAANKLG----TSEKTVELFESIIPV-----CPPQTQPSELLPLRNVNMAVIF---A 350 (386)
Q Consensus 283 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~~~~~~~c~~---~ 350 (386)
.....|.|.++..+|+|.|+|.|.|..| ....++.|.|...+. .........+..|+.++|.|.+ .
T Consensus 177 --~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~ 254 (339)
T 3o4o_C 177 --RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGT 254 (339)
T ss_dssp --TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESS
T ss_pred --CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCC
Confidence 1235899999999999999999999988 456677887775432 1112334467789999999999 8
Q ss_pred CCC----CCcccccceeeec---------ccc-----e------eeeeeeeecccc-cCC
Q psy8823 351 EQP----TSWEPQRKQLNCS---------SLL-----Y------QCVLPLVDRQDR-LMH 385 (386)
Q Consensus 351 ~~p----~~W~~~~~~l~~~---------~~~-----~------~~~i~~v~~~d~-~~~ 385 (386)
+.| +.|++|+..+..+ .++ . .|.|..|+.+|+ +.|
T Consensus 255 g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y 314 (339)
T 3o4o_C 255 GTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDF 314 (339)
T ss_dssp SCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCC
T ss_pred CCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccE
Confidence 877 6899999875422 111 0 599999999997 755
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=197.54 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=167.6
Q ss_pred eEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCC-----------------CceE-----EeeeEEEECCCCCCCCe
Q psy8823 144 SLVVSEGQPVQLECFAGGH-PTPRISWRRENNAILPT-----------------GGSI-----YRGSILKIPQITKEDRG 200 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~-----------------~~~~-----~~~~~l~i~~~~~~d~g 200 (386)
.+.+.+|++++|.|.+.+. +.+.++|+|++...... .+.. ....+|.|.+++.+|+|
T Consensus 8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 87 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG 87 (308)
T ss_dssp SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence 4568899999999998644 44579999975432100 0011 12357999999999999
Q ss_pred EEEEEEecCCCCceeeeEEEEEEecceEe--eCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEe
Q psy8823 201 TYYCVAENGVGKGTRRNIAVEVEFAPVIT--VPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSIS 277 (386)
Q Consensus 201 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~ 277 (386)
.|+|.+.+......+....+.+...|... ..+.......|+.+.|.|.+ .|.|.+.+.|++++.. +.....
T Consensus 88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~--~~~~~~---- 161 (308)
T 4fom_A 88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGE--MESTTT---- 161 (308)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSB--CCEEEE----
T ss_pred EEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcc--cccccc----
Confidence 99999988655445666777777666543 34445556678899999985 6899999999999877 322111
Q ss_pred eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEEEEEEecCCCCCCC-CCceeecCcceeeeEEecCCC-
Q psy8823 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVELFESIIPVCPPQT-QPSELLPLRNVNMAVIFAEQP- 353 (386)
Q Consensus 278 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~p~~~~~~-~~~~~~~~~~~~~~c~~~~~p- 353 (386)
..........+.|.|.++..+|+|.|+|.|.|..|... .++.|.|...|...... ....+..++.++|.|.+.|.|
T Consensus 162 ~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~ 241 (308)
T 4fom_A 162 SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPP 241 (308)
T ss_dssp ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESC
T ss_pred eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCC
Confidence 11112223456799999999999999999999987654 45566666666543333 334455677899999998876
Q ss_pred ---CCcccccceeeecccce---eeeeeeeecccccCC
Q psy8823 354 ---TSWEPQRKQLNCSSLLY---QCVLPLVDRQDRLMH 385 (386)
Q Consensus 354 ---~~W~~~~~~l~~~~~~~---~~~i~~v~~~d~~~~ 385 (386)
+.|++++..+..+.... .+.|..|+.+|++.|
T Consensus 242 p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 279 (308)
T 4fom_A 242 PFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVY 279 (308)
T ss_dssp EEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEE
T ss_pred CcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEE
Confidence 57999999887654432 577899999999865
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-25 Score=176.66 Aligned_cols=185 Identities=18% Similarity=0.313 Sum_probs=143.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.. .+.++.... ...+..+|.|.+
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-------------~~~~~~~~~-~~~~~~~L~i~~ 68 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA-------------DGLKYRIQE-FKGGYHQLIIAS 68 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCC-------------CSSSEEEEE-ETTTEEEEEECS
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECcc-------------CCCcEEEEE-cCCCEEEEEECc
Confidence 578898888889999999999999999888889999998765421 112222211 123456899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecC----CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN----STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.+..+ ..+..+.|.|..+|..... .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 69 ~~~~d~G~Y~C~~~n~~g-~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~ 147 (197)
T 2j8h_A 69 VTDDDATVYQVRATNQGG-SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN 147 (197)
T ss_dssp CCGGGCSEEEEEEEETTE-EEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECS
T ss_pred CCHHhCEEEEEEEEECCC-ceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeec
Confidence 999999999999997644 3467778888776654322 12456788999999999999999999999999988865
Q ss_pred CCceEE----eeeEEEECC-CCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 179 TGGSIY----RGSILKIPQ-ITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 179 ~~~~~~----~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
...... ....|.|.+ +..+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 148 ~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~ 196 (197)
T 2j8h_A 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVA 196 (197)
T ss_dssp SSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred CCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCc-EeEEEEEEEe
Confidence 544332 246899999 9999999999999999887 5667777664
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-25 Score=173.78 Aligned_cols=165 Identities=25% Similarity=0.453 Sum_probs=138.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe------eeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+....+.+|+.++|.|.+.+.|.+.+.|++++..+......... ...|.|.+++.+|+|.|+|.+.+..+...+
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~ 88 (182)
T 1rhf_A 9 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS 88 (182)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred CcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEE
Confidence 45677899999999999999889999999999887655433221 368999999999999999999998776566
Q ss_pred eeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEee
Q psy8823 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVIT 294 (386)
Q Consensus 216 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 294 (386)
..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.| .+.|++++.. +..... ....|.|.+
T Consensus 89 ~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~--~~~~~~------------~~~~L~i~~ 154 (182)
T 1rhf_A 89 QPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK--IGGPAP------------SPSVLNVTG 154 (182)
T ss_dssp CCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEE--CSCSEE------------SSEEEEECC
T ss_pred EEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeE--CCCCCC------------CceEEEEec
Confidence 7889999999998887777888999999999999999999 9999999987 332211 467789988
Q ss_pred cccCCCeEEEEEEEcCCCceee-EEEEEE
Q psy8823 295 IEKRQYGSYICRAANKLGTSEK-TVELFE 322 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v 322 (386)
+ +|+|.|+|.|.|..|.... ++.|.|
T Consensus 155 ~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 155 V--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp C--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred c--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 8 5899999999999998864 777766
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=176.41 Aligned_cols=179 Identities=26% Similarity=0.370 Sum_probs=136.7
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+... .+.....+......+|.|.++
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~--------------~~~~~~~~~~~~~~~L~i~~~ 67 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL--------------DQLYIPVSEQHWIGFLSLKSV 67 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSS--------------EEEEEEEETTEEEEEEEESSC
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCC--------------CceEEEecCCCceEEEEEeec
Confidence 456777788888999999999999998888899999987654211 112222222233568999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCCce
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGS 182 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~ 182 (386)
+.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+.....
T Consensus 68 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~- 145 (182)
T 1rhf_A 68 ERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE-PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP- 145 (182)
T ss_dssp CGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEEC-CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-
T ss_pred CcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEec-CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-
Confidence 9999999999998765555677889999988877654 344678899999999999999998 9999999988754322
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....|.|.++ +|+|.|+|.+.|..|...+..+.|.|
T Consensus 146 --~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 146 --SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp --SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred --CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 5667999988 58999999999998875455677665
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-27 Score=203.89 Aligned_cols=232 Identities=18% Similarity=0.240 Sum_probs=166.2
Q ss_pred ceEEEeCCccEEEEEEeeeeC-CCeEEEEEcCeeeCC----CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILP----TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
..+.+.+|+.+.|.|.+.+.+ .+.+.|++++..... .......+..|.|.+++.+|+|.|+|.+.|..+. ....
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~ 91 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC-LRIK 91 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCC-CCEE
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceE-EEEE
Confidence 356788999999999998877 789999999865321 2233344668999999999999999999998765 3333
Q ss_pred EEEEEE-ecceEeeCC---CcccccCCCcEEEEEEE------EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceee
Q psy8823 218 IAVEVE-FAPVITVPK---PRLGQALQYDMDLECHV------EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTD 287 (386)
Q Consensus 218 ~~l~v~-~~p~~~~~~---~~~~~~~g~~~~l~C~~------~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (386)
+.+.+. .+|.+...+ ....+..|+.+.|.|.+ .|.|.+.+.|++++..+... ..++. ...
T Consensus 92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~-~~~~~---------~~~ 161 (315)
T 1itb_B 92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD-NIHFS---------GVK 161 (315)
T ss_dssp CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCC-SSSEE---------EET
T ss_pred EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCc-cceEe---------ecC
Confidence 333332 233332211 12356789999999998 88999999999999883221 11111 135
Q ss_pred eEEEEeecccCCCeEEEEEEE-cCCCce---eeEEEEEEEecC-CCCCC---CCC--ceeecCcceeeeEEecCCC---C
Q psy8823 288 TTIRVITIEKRQYGSYICRAA-NKLGTS---EKTVELFESIIP-VCPPQ---TQP--SELLPLRNVNMAVIFAEQP---T 354 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~-n~~g~~---~~~~~l~v~~~p-~~~~~---~~~--~~~~~~~~~~~~c~~~~~p---~ 354 (386)
..|.|.++..+|+|.|+|.|. |..|.. ...+.+.+.... ..+|. ... ..+..|+.++|.|.+.|.| +
T Consensus 162 ~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i 241 (315)
T 1itb_B 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA 241 (315)
T ss_dssp TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence 589999999999999999999 788877 344444443211 11121 111 3577899999999999887 6
Q ss_pred Ccccccceeeeccc--------------------ceeeeeeeeeccc-ccCC
Q psy8823 355 SWEPQRKQLNCSSL--------------------LYQCVLPLVDRQD-RLMH 385 (386)
Q Consensus 355 ~W~~~~~~l~~~~~--------------------~~~~~i~~v~~~d-~~~~ 385 (386)
.|++||..+..+.. ...|.|..|+.+| ++.|
T Consensus 242 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y 293 (315)
T 1itb_B 242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPF 293 (315)
T ss_dssp EEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCE
T ss_pred EEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCce
Confidence 99999999887542 1269999999999 8765
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=184.52 Aligned_cols=203 Identities=21% Similarity=0.323 Sum_probs=143.6
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
....+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+....... ..... ...+.......|.
T Consensus 5 ~~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~l~ 75 (212)
T 2v9r_A 5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP-RSHRM--------LLPSGSLFFLRIV 75 (212)
T ss_dssp -CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCT-TCSEE--------ECTTSCEEESSCC
T ss_pred cccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeecccccc-ccceE--------EecCCcEEEEEEE
Confidence 34567889988889899999999999999988888999999886553211000 00000 0011111111456
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILP 178 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~ 178 (386)
|.+++.+|+|.|+|.+.+..+...+..+.|.|...+......+....+.+|+.++|.|.+ .+.|.+.+.|++++..+..
T Consensus 76 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~ 155 (212)
T 2v9r_A 76 HGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD 155 (212)
T ss_dssp CCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECT
T ss_pred ecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCC
Confidence 677899999999999998765544556677776543323333455678899999999998 8999999999999998875
Q ss_pred CCc-eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeC
Q psy8823 179 TGG-SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231 (386)
Q Consensus 179 ~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~ 231 (386)
... ....+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...
T Consensus 156 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~ 209 (212)
T 2v9r_A 156 KDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA 209 (212)
T ss_dssp TSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-------
T ss_pred CcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhh
Confidence 443 33456789999999999999999999998875555689999988876643
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=178.88 Aligned_cols=187 Identities=24% Similarity=0.430 Sum_probs=146.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+.. .+.++....+ ...|.|.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~-------------~~~~~~~~~~----~~~L~i~ 67 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKL-------------FDTRYSIREN----GQLLTIL 67 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCT-------------TCTTEEEEGG----GTEEEES
T ss_pred CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccc-------------cCccEEEcCC----ccEEEEc
Confidence 4567787777778899999999999999888889999998765421 1223333221 1279999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 68 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 146 (192)
T 2iep_A 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146 (192)
T ss_dssp SCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEEC-CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSS
T ss_pred CCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccC-CcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCc
Confidence 999999999999999876665566777888877776654 3456788999999999999999999999999988765544
Q ss_pred eEE-eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 182 SIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 182 ~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
... ....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|.++|
T Consensus 147 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp EEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 322 355799999999999999999999988765677888888765
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=181.30 Aligned_cols=167 Identities=15% Similarity=0.192 Sum_probs=123.5
Q ss_pred EEEeCCccEEEEEE---eeeeCCCeEEEEEcCeeeCCC-----------------Cce----EEeeeEEEECCCCCCCCe
Q psy8823 145 LVVSEGQPVQLECF---AGGHPTPRISWRRENNAILPT-----------------GGS----IYRGSILKIPQITKEDRG 200 (386)
Q Consensus 145 ~~~~~g~~v~l~C~---~~~~~~~~v~W~~~~~~~~~~-----------------~~~----~~~~~~l~i~~~~~~d~g 200 (386)
+++..|+.++|.|. +.+.|.+.++|+|++...... ... ......|.|.+++.+|+|
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 82 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 82 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence 56889999999995 567788999999987432110 000 012457999999999999
Q ss_pred EEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec--CceeEEee
Q psy8823 201 TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN--NQHYSISH 278 (386)
Q Consensus 201 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~--~~~~~~~~ 278 (386)
.|+|.+.|..+. ....+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++....... ..++...
T Consensus 83 ~Y~C~a~n~~g~-~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~- 160 (203)
T 4fa8_A 83 NYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE- 160 (203)
T ss_dssp EEEEEEEETTEE-EEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC-
T ss_pred EEEEEEEcCCCc-EEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe-
Confidence 999999998876 567788999888888877777888999999999999999999999998776522211 2222211
Q ss_pred eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 279 FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 279 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
.......|.+.++..+|+|.|+|.|.|..|+++..
T Consensus 161 ----~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 161 ----KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp ----TTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred ----CCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 11123455677999999999999999999998763
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=175.13 Aligned_cols=173 Identities=18% Similarity=0.315 Sum_probs=138.9
Q ss_pred CceEEEeCCccEEEEEEeeeeC-CCeEEEEE-cCeeeCCCCceE-E-----eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-TPRISWRR-ENNAILPTGGSI-Y-----RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~-~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+....+.+|+.++|.|.+.+.+ .+.+.|++ ++..+....... . ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 88 (191)
T 1epf_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ 88 (191)
T ss_dssp SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcc
Confidence 3456788999999999998876 78999999 777776433221 1 24689999999999999999999987655
Q ss_pred eeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 214 TRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 214 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
.+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|+|.+.+.|++++..+......++... .++.|.|.
T Consensus 89 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~ 160 (191)
T 1epf_A 89 SEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--------SNNYLQIR 160 (191)
T ss_dssp EEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC--------TTSCEEET
T ss_pred eEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe--------cCCeEEEC
Confidence 6778889999999888877778889999999999999999999999999987333233333221 24479999
Q ss_pred ecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 294 TIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
++..+|+|.|+|.|.|..|.......+.|
T Consensus 161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 161 GIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp TCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 99999999999999999976666555554
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-25 Score=175.00 Aligned_cols=173 Identities=26% Similarity=0.477 Sum_probs=134.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRN 217 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~ 217 (386)
+....+.+|+.++|.|.+.+.|.+.+.|++++..+..... ....+..|.|.+++.+|+|.|+|.+.+..+. .....
T Consensus 9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 88 (189)
T 2v5t_A 9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88 (189)
T ss_dssp CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEE
Confidence 3456789999999999999989999999999887653221 1123567999999999999999999987643 23456
Q ss_pred EEEEEEecceEeeCCC--cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeec
Q psy8823 218 IAVEVEFAPVITVPKP--RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI 295 (386)
Q Consensus 218 ~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 295 (386)
+.+.+..+|.+..... ...+..|+.+.|.|.+.|.|.+.+.|++++.. +.....+... .....|.|.++
T Consensus 89 ~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~--~~~~~~~~~~-------~~~~~L~i~~~ 159 (189)
T 2v5t_A 89 IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL--IEENEKYILK-------GSNTELTVRNI 159 (189)
T ss_dssp EEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEE--CCCSSSEEEE-------TTTTEEEECSC
T ss_pred EEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEE--CcCCCcEEEe-------cCCCEEEEcCC
Confidence 7788888887766544 35677899999999999999999999999987 5444444322 12467999999
Q ss_pred ccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 296 EKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 296 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
..+|+|.|+|.|.|..|....++.|.|.
T Consensus 160 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 160 INSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 9999999999999999999999988875
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-25 Score=174.85 Aligned_cols=184 Identities=22% Similarity=0.312 Sum_probs=139.6
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++..+.... ..++.... ..+..+|.|.
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~------------~~~~~~~~--~~~~~~L~i~ 68 (194)
T 2a38_A 3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST------------LPGVQISF--SDGRAKLTIP 68 (194)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTT------------STTCEEEE--ETTEEEEEES
T ss_pred CCCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEccccc------------CCceEEEe--CCCEEEEEEC
Confidence 346888888888899999999999999988888999999887652211 01111111 1345689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
+++.+|+|.|+|.+.+..+. ....+.|.|.. +|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 69 ~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~v~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~ 146 (194)
T 2a38_A 69 AVTKANSGRYSLKATNGSGQ-ATSTAELLVKAETAPPNFVQR-LQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS 146 (194)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCEEEEEEEC-CCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred CCCcccCEEEEEEEEcCCce-EeEEEEEEEccCCCCCEEEeC-CccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCC
Confidence 99999999999999876443 45566777763 4444433 3456788999999999999999999999999998865
Q ss_pred CCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 179 TGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 179 ~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....... ...|.|.++..+|+|.|+|.+.|..+. ....+.|.|
T Consensus 147 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V 193 (194)
T 2a38_A 147 SLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLV 193 (194)
T ss_dssp SSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred CCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCc-eEEEEEEEE
Confidence 5443322 237999999999999999999999887 555666655
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=171.36 Aligned_cols=186 Identities=16% Similarity=0.314 Sum_probs=143.6
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++..+. ...++.... .....+|.|
T Consensus 4 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~--------------~~~~~~~~~--~~~~~~L~i 67 (197)
T 3lcy_A 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELI--------------QSRKYKMSS--DGRTHTLTV 67 (197)
T ss_dssp CCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEEC--------------CCSSEEEEE--SSSEEEEEE
T ss_pred cCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECC--------------CCccEEEEe--CCCEEEEEE
Confidence 3457888888888999999999999999888888999999875431 122232222 223558999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecC--CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDN--STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~--~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
.+++.+|+|.|+|.+.+..+ .....+.|.|..+|..... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 68 ~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~ 146 (197)
T 3lcy_A 68 MTEEQEDEGVYTCIATNEVG-EVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQN 146 (197)
T ss_dssp ECCSGGGCEEEEEEEECSSC-EEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred ecCCccCCEEEEEEEECCCC-ceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCC
Confidence 99999999999999986543 3456677777766655432 23556788999999999999999999999999988866
Q ss_pred CCceEEe----eeEEEECCCCC-CCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 179 TGGSIYR----GSILKIPQITK-EDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 179 ~~~~~~~----~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
....... ...|.|.++.. +|+|.|+|.+.|..+. ....+.|.|..
T Consensus 147 ~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~ 196 (197)
T 3lcy_A 147 SENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT-VDAILDVEIQD 196 (197)
T ss_dssp CSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCE-EEEEEEEEEEC
T ss_pred CCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCc-eEEEEEEEEec
Confidence 5544332 26799999995 8999999999999887 56677777653
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=167.34 Aligned_cols=175 Identities=24% Similarity=0.351 Sum_probs=132.9
Q ss_pred cCCeeeeeccceeeec-CCcEEEEEEEeeCCC--CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 23 RTPTISYISQEQIKDI-GGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~-G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.+|.|... ....+.+ |+++.|.|.+.+.+. +.+.|++++..+... +.. ..+..|.
T Consensus 2 ~~P~i~~~-~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~---------------~~~------~~~~~L~ 59 (190)
T 2wv3_A 2 NEPRIVTS-EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---------------RKN------ASNMEYR 59 (190)
T ss_dssp -CCEEEEC-CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTC---------------CBC------CSEEEEE
T ss_pred CCCccccc-ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECccc---------------ceE------eccEEEE
Confidence 46777764 4455556 999999999998776 789999987654211 100 1345899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEE--cCeeeC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRR--ENNAIL 177 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~ 177 (386)
|.+++.+|+|.|+|.+.+. +..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+.
T Consensus 60 i~~~~~~d~G~Y~C~~~n~--~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~ 136 (190)
T 2wv3_A 60 INKPRAEDSGEYHCVYHFV--SAPKANATIEVKAAPDITGH-KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE 136 (190)
T ss_dssp ESSCCGGGCEEEEEEEEET--TEEEEEEEEEEECCCEEEEE-CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred EecCCcccCEEEEEEEEeC--CcccccEEEEEecCCccccc-CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee
Confidence 9999999999999999987 55677888999988877654 345678899999999999999999999999 665543
Q ss_pred C---CCceEEe----eeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 178 P---TGGSIYR----GSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 178 ~---~~~~~~~----~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
. ....... ...|.|.++. .+|+|.|+|.+.|..+. ....+.|.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~ 189 (190)
T 2wv3_A 137 ISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVSTVLRVR 189 (190)
T ss_dssp CCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred eecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCc-ceeEEEEEEE
Confidence 1 2222221 2479999999 79999999999999887 5566666664
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-25 Score=179.09 Aligned_cols=187 Identities=19% Similarity=0.370 Sum_probs=139.5
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.+.|..+. ....
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~ 105 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHT 105 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEE
T ss_pred eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCc-cccc
Confidence 5667899999999999999999999999999887544321 122457999999999999999999998776 4567
Q ss_pred EEEEEEecc----eEee-CCCcccccCCCcEEEEEEEEecCCCeeEEEe----CCeeeeeecCceeEEeeeeecCceeee
Q psy8823 218 IAVEVEFAP----VITV-PKPRLGQALQYDMDLECHVEAYPPPAIVWIK----EDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 218 ~~l~v~~~p----~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
+.+.|...+ .+.. .+....+..|+.+.|.|.+.++|.+.+.|++ ++..+.....................+
T Consensus 106 ~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (231)
T 3ojm_B 106 YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE 185 (231)
T ss_dssp EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTT
T ss_pred EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCcc
Confidence 777776532 2222 2345667889999999999999999999999 666522122112222111122223456
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCC
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPP 330 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~ 330 (386)
.|.|.++..+|+|.|+|.|.|..|..+.++.|.|...|.+|.
T Consensus 186 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~ 227 (231)
T 3ojm_B 186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPG 227 (231)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC----
T ss_pred EEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCc
Confidence 799999999999999999999999999999999998887554
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=172.49 Aligned_cols=174 Identities=18% Similarity=0.342 Sum_probs=135.4
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEe-cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMK-VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
++.+.+.|.+..+.+|++++|.|.+.+.+ .+.+.|++ ++..+.. ...++..... .....+|.|.
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~-------------~~~~~~~~~~-~~~~~~L~i~ 67 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-------------NQQRISVVWN-DDDSSTLTIY 67 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECC-------------BSSSEEEEEE-ETTEEEEEEC
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccC-------------CCCeEEEEEC-CCCceEEEEc
Confidence 56788889999999999999999998765 78899999 5543311 1222222211 1345689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 68 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 146 (191)
T 1epf_A 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP-TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146 (191)
T ss_dssp SCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECC-SSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCC
T ss_pred cCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCC-CcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCC
Confidence 9999999999999998766667788889998888776543 445788999999999999999999999999988754322
Q ss_pred ---eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 182 ---SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 182 ---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
....+..|.|.+++.+|+|.|+|.+.|..+.
T Consensus 147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 180 (191)
T 1epf_A 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180 (191)
T ss_dssp TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred ceEEEecCCeEEECCCChhhCEEEEEEEEEecce
Confidence 1123457999999999999999999997743
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=171.36 Aligned_cols=182 Identities=26% Similarity=0.434 Sum_probs=136.7
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|...+.+..+.+|++++|.|.+.+.+.+.+.|++++..+.. ..+.++....+ .+|.|.++
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~-----~~L~i~~~ 64 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT------------ISDNRFAMLAN-----NNLQILNI 64 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CB------------CCCTTEEECTT-----SCEEETTC
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCcccee------------ccCCeEEEecC-----CCEEEeeC
Confidence 57788888889999999999999999888889999998865421 11233333222 26999999
Q ss_pred CCCCCeEEEEEeEEcccc-eeeeEEEEEEecCCeeecCCCc-eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 104 QETDAGYYRCQVIIGINN-KISAEVDLQVRRPPVISDNSTR-SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+.+|+|.|+|.+.+.... .....+.+.+..+|.+...... ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 65 ~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~ 144 (189)
T 2v5t_A 65 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK 144 (189)
T ss_dssp CGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSS
T ss_pred CHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCc
Confidence 999999999999987543 3345677777777766544332 45667899999999999999999999999988765544
Q ss_pred eEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 182 SIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 182 ~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
... .+..|.|.++..+|+|.|+|.+.|..+. ....+.|.|.
T Consensus 145 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 187 (189)
T 2v5t_A 145 YILKGSNTELTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVF 187 (189)
T ss_dssp EEEETTTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred EEEecCCCEEEEcCCChhhCeeEEEEEEeCCCc-eeEEEEEEEE
Confidence 333 2467999999999999999999999887 4556666653
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-25 Score=183.59 Aligned_cols=207 Identities=19% Similarity=0.285 Sum_probs=120.9
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeC-----CCeEEEEEcC--ee
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-----TPRISWRREN--NA 175 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~ 175 (386)
++.+|+|.|+|.+. +.....+.+.+..++.+.. .+..+.+.+|++++|.|.+.+.+ .+.+.|++++ ..
T Consensus 11 v~~~dsg~Y~C~a~----g~~~~~~~~~~~~~~~~~~-~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~ 85 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS----GYSFTNYWMNWLRELVMTQ-SPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQS 85 (254)
T ss_dssp -------------------------------CCCEEE-ECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSC
T ss_pred ecCCccEEEEEcCc----hhhhhhhhhheeeceeEEe-CCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCC
Confidence 68899999999987 2222233333333444433 24567899999999999998877 3789999854 21
Q ss_pred e----------CC--CCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe---cceEeeCCCccc
Q psy8823 176 I----------LP--TGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF---APVITVPKPRLG 236 (386)
Q Consensus 176 ~----------~~--~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~ 236 (386)
+ .. ..+... ....|.|.+++.+|+|.|+|.+.|..+........+.|.. +|.+........
T Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~ 165 (254)
T 2c1o_A 86 PKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSE 165 (254)
T ss_dssp CEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHH
T ss_pred ceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChh
Confidence 1 00 011111 2347999999999999999999987654333334566643 566665444444
Q ss_pred ccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCce--eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 237 QALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQH--YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...|+.++|.|.+.|. |+ +.+.|++++.. +..... .......+......+.|.|.++..+|+|.|+|.|.|...
T Consensus 166 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 243 (254)
T 2c1o_A 166 QLTSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 243 (254)
T ss_dssp HHHTTEEEEEEEEEEEBSSCCEEEEEESSSE--ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred hccCCcEEEEEEEecccCCCcEEEEEECCCc--ccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence 4567899999999884 44 36999999987 444311 111111111122467899999999999999999999987
Q ss_pred ceee
Q psy8823 313 TSEK 316 (386)
Q Consensus 313 ~~~~ 316 (386)
....
T Consensus 244 ~~~~ 247 (254)
T 2c1o_A 244 TSPI 247 (254)
T ss_dssp SSCE
T ss_pred CCcc
Confidence 6533
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=173.21 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=127.2
Q ss_pred eEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCceEEe------eeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 144 SLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
...+.+|+.+.|.|.+. +.|.+.++|++++..+......... ...|.|.+++.+|+|.|+|.+.| +. ...
T Consensus 11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~-a~~ 87 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GK-ATN 87 (207)
T ss_dssp EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TT-EEE
T ss_pred ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CC-eEE
Confidence 46788999999999995 4799999999999998765543321 23699999999999999999999 33 222
Q ss_pred eEEEEEE---------------------ecceEeeCCCcccccCCCcEEEEEEEEec-CCCeeEEEeCCeeeeeecCcee
Q psy8823 217 NIAVEVE---------------------FAPVITVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 217 ~~~l~v~---------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
...+.+. .+|.+.... ...+.+|+.+.|.|.+.|. |.|.+.|++++.. +....++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~--l~~~~~~ 164 (207)
T 3rbs_A 88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDERE--ISVDEKH 164 (207)
T ss_dssp EEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEE--ECCCCCC
T ss_pred EEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEE--CCCCCce
Confidence 2232211 145554433 3567889999999999999 8999999999988 5443332
Q ss_pred EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
. .......|.|.++..+|+|.|+|.|.|..|..+.++.|..
T Consensus 165 ~-------~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 165 D-------FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp C-------CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred E-------cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 1 1123567999999999999999999999999999988754
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=176.85 Aligned_cols=187 Identities=25% Similarity=0.447 Sum_probs=137.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.+.+..+. ...
T Consensus 22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~ 100 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQ 100 (241)
T ss_dssp CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEE
T ss_pred CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCc-eEE
Confidence 45678999999999999999999999999999887543321 123458999999999999999999998775 456
Q ss_pred eEEEEEEec----ceEe-eCCCcccccCCCcEEEEEEEEecCCCeeEEEe----CCeeeeeecCce--eEEe-eeeecCc
Q psy8823 217 NIAVEVEFA----PVIT-VPKPRLGQALQYDMDLECHVEAYPPPAIVWIK----EDTQQVLTNNQH--YSIS-HFATADE 284 (386)
Q Consensus 217 ~~~l~v~~~----p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~----~~~~~~~~~~~~--~~~~-~~~~~~~ 284 (386)
.+.+.|... |.+. ..+....+..|+.+.|.|.+.|.|.+.+.|++ ++.. +..... .... .......
T Consensus 101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~ 178 (241)
T 3grw_A 101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK--VGPDGTPYVTVLKSWISESV 178 (241)
T ss_dssp EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCS--SCTTTCCCEEEEEEEECSBS
T ss_pred EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcc--cCCCCceeeeeeeEeeeeec
Confidence 677777652 3332 23455668889999999999999999999999 6665 322221 1111 1112222
Q ss_pred eeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC
Q psy8823 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ 331 (386)
Q Consensus 285 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~ 331 (386)
.....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.++..
T Consensus 179 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~ 225 (241)
T 3grw_A 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225 (241)
T ss_dssp EEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC---------
T ss_pred CCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCcc
Confidence 35678999999999999999999999999999999999887765543
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-23 Score=188.18 Aligned_cols=269 Identities=15% Similarity=0.176 Sum_probs=163.9
Q ss_pred cCCcEEEEEEEeeC-CCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 38 IGGTVELKCSVQYA-QDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 38 ~G~~v~L~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
.|+.++|.|.+.+. |.+ .|+|++++.... ..........++.+.. ...|.|.....+ .|.|+|.+
T Consensus 149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~-----~~~~~~~~~~~g~~~~-------~s~L~i~~~~~~-~g~ytC~v 215 (512)
T 1zvo_C 149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQP-----QRTFPEIQRRDSYYMT-------SSQLSTPLQQWR-QGEYKCVV 215 (512)
T ss_pred CCCeEEEEEEEEeeecCceEEEEEcCcccCc-----eEecCceecCCCCEEE-------EEEEEEcHHHcC-CceEEEEE
Confidence 57899999999876 544 799999653210 0000001111222222 236889888877 99999999
Q ss_pred EEcccceeee----------EEEEEEecCC--------------------------------------------------
Q psy8823 116 IIGINNKISA----------EVDLQVRRPP-------------------------------------------------- 135 (386)
Q Consensus 116 ~~~~~~~~~~----------~~~l~v~~~p-------------------------------------------------- 135 (386)
.|..+..... ...+.+..+|
T Consensus 216 ~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 295 (512)
T 1zvo_C 216 QHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQ 295 (512)
T ss_pred EeCCCCceEEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCC
Confidence 9865432211 1123333222
Q ss_pred --eeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCeeeCCC----------CceEEeeeEEEECCCCCCCCeE
Q psy8823 136 --VISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNAILPT----------GGSIYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 136 --~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~g~ 201 (386)
.+....+....+.+|+.++|.|.+.+.++ ..++|++++..+... ++.....+.|.|.....+|.|.
T Consensus 296 ~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~ 375 (512)
T 1zvo_C 296 PLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTS 375 (512)
T ss_pred CCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCe
Confidence 22222222223557999999999988644 389999999875411 1111224569999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEE----EecceEeeCCCcccccCCCcEE-EEEEEEecCCC--eeEEEeCCeeeeeecCcee
Q psy8823 202 YYCVAENGVGKGTRRNIAVEV----EFAPVITVPKPRLGQALQYDMD-LECHVEAYPPP--AIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~-l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~ 274 (386)
|+|.+.|..+....+.+.... ..+|.+...++.. .|+.+. |.|.+.|++++ .+.|+++|.. +......
T Consensus 376 y~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~--~~~~~~~ 450 (512)
T 1zvo_C 376 VTCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQRE--VNTSGFA 450 (512)
T ss_pred EEEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeE--CcCcccc
Confidence 999999977642222222211 2456655443322 788999 99999986544 6899999987 4332111
Q ss_pred --EEeeeeecC-ceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEEEEEEe
Q psy8823 275 --SISHFATAD-EFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVELFESI 324 (386)
Q Consensus 275 --~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~ 324 (386)
......... ....+.|.+.....+|+|.|+|.|.|...... ....+.|..
T Consensus 451 ~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~ 505 (512)
T 1zvo_C 451 PARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY 505 (512)
T ss_pred ccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence 011111111 22345678888888889999999999976543 445555543
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=186.11 Aligned_cols=213 Identities=13% Similarity=0.075 Sum_probs=156.9
Q ss_pred EEeCCccEEEEEEeee-eCCC--eEEEEEcCeeeCCCCceEEeeeEEEECCC---CCCCCe--EEEEEEecCCCCceeee
Q psy8823 146 VVSEGQPVQLECFAGG-HPTP--RISWRRENNAILPTGGSIYRGSILKIPQI---TKEDRG--TYYCVAENGVGKGTRRN 217 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~g--~y~C~~~~~~~~~~~~~ 217 (386)
.+.+|+.++|.|.+.+ .|.+ .++|++++..+.. .....+..+.+..+ +..|+| .|+|.+.|..+. ....
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~-~~~~ 90 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETL 90 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEE-EEEE
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCC-cEEE
Confidence 5789999999999988 6666 9999999988754 22233445555555 777887 499999998776 5677
Q ss_pred EEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 218 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
+.|.|...|..........+.+|+.+.|.|.+. |.+.+.| ++.. +... .....|.|..+..
T Consensus 91 ~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~--~~~~-------------~~~~~l~i~~~~~ 151 (265)
T 2oz4_A 91 QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVP--AQPL-------------GPRAQLLLKATPE 151 (265)
T ss_dssp EEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCS--SSCC-------------SSEECCEEECCGG
T ss_pred EEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEE--ccCC-------------CCcEEEEEccccc
Confidence 888887643322223345577899999999997 8889999 6665 2111 1246688999999
Q ss_pred CCCeEEEEEEEcCC-Ccee---eEEEEEEEecCCCCCCC--CCceeecCcceeeeEEecCCC---CCcccccceeeeccc
Q psy8823 298 RQYGSYICRAANKL-GTSE---KTVELFESIIPVCPPQT--QPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCSSL 368 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~-g~~~---~~~~l~v~~~p~~~~~~--~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~~~ 368 (386)
+|+|.|+|.|.|.. |... .++.|.|...|...... ....+..|+.++|.|.+.|.| ++|++++..+.....
T Consensus 152 ~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~ 231 (265)
T 2oz4_A 152 DNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE 231 (265)
T ss_dssp GTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS
T ss_pred cCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCc
Confidence 99999999998654 7665 67888888877654432 234678899999999998888 689999995444332
Q ss_pred ceeeeeeeeecccccCC
Q psy8823 369 LYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 369 ~~~~~i~~v~~~d~~~~ 385 (386)
|..|+++|++.|
T Consensus 232 -----~~~v~~~d~G~Y 243 (265)
T 2oz4_A 232 -----SVTVTRDLEGTY 243 (265)
T ss_dssp -----CEECCGGGCEEE
T ss_pred -----EEEeehhhCeEE
Confidence 234888888765
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-25 Score=177.84 Aligned_cols=182 Identities=18% Similarity=0.338 Sum_probs=135.6
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC------------CCCceEEeeeEEEECCCCCCCCeEEEEEEec
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL------------PTGGSIYRGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~------------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...........|.|.+++.+|+|.|+|.+.+
T Consensus 7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 86 (212)
T 1f97_A 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE 86 (212)
T ss_dssp SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEc
Confidence 3556778999999999999988899999999876531 1223333457899999999999999999999
Q ss_pred CCCC-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEE-EEecCCCeeEEEeCCe-eeeeecCceeEE--eeeeecC
Q psy8823 209 GVGK-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECH-VEAYPPPAIVWIKEDT-QQVLTNNQHYSI--SHFATAD 283 (386)
Q Consensus 209 ~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~~~~~W~~~~~-~~~~~~~~~~~~--~~~~~~~ 283 (386)
..+. .....+.|.|..+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. . +........ .......
T Consensus 87 ~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~--l~~~~~~~~~~~~~~~~~ 164 (212)
T 1f97_A 87 EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM--LTADAKKTRAFMNSSFTI 164 (212)
T ss_dssp TTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEES--BC-----CBSCSSSCEEE
T ss_pred cCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccc--ccccccccccccCceeEe
Confidence 7663 246678888988887655444566788999999999 7899999999999998 6 322211100 0000000
Q ss_pred ceeeeEEEEeecccCCCeEEEEEEEcCCCce--eeEEEEEEEe
Q psy8823 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTS--EKTVELFESI 324 (386)
Q Consensus 284 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~ 324 (386)
......|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 165 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 165 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 1135689999999999999999999999988 4566666653
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=177.08 Aligned_cols=190 Identities=20% Similarity=0.345 Sum_probs=137.4
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
....+|.|...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.... ................|.
T Consensus 5 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~------------~~~~~~~~~~~~~~~~l~ 72 (217)
T 2vr9_A 5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE------------KKSHRVQFKDGALFFYRT 72 (217)
T ss_dssp -CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSS------------SSSSEEECTTSCEEESSC
T ss_pred cccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCC------------ccceeEEecCCceEEEEE
Confidence 45678899999989999999999999999988888999999886542210 001111112222222457
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEec-CCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR-PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAIL 177 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~ 177 (386)
|.+++.+|+|.|+|.+.+..+...+..+.|.|.. +|.+.. .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus 73 i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~ 151 (217)
T 2vr9_A 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV-EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151 (217)
T ss_dssp CBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSB-CCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred eccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEE-CCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence 8899999999999999987655545556666654 333322 3445678899999999999 899999999999998876
Q ss_pred CCC--------c-eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 178 PTG--------G-SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 178 ~~~--------~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
... . .......|.|.+++.+|+|.|+|.+.|..|...+....+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp CCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence 321 1 11234689999999999999999999998875444444443
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-25 Score=179.32 Aligned_cols=190 Identities=23% Similarity=0.452 Sum_probs=137.8
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc----eEEeeeE----EEECCCCCCCCeEEEE
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSI----LKIPQITKEDRGTYYC 204 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~----~~~~~~~----l~i~~~~~~d~g~y~C 204 (386)
.+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ....... |.|.+++.+|+|.|+|
T Consensus 8 ~~P~i~~~-p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 86 (217)
T 2vr9_A 8 QSPRIIEH-PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC 86 (217)
T ss_dssp CCCEEEEC-CCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred CCCEEecC-CCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence 34555543 4557889999999999999989999999999988765421 1111222 3688899999999999
Q ss_pred EEecCCCCceeeeEEEEEEe-cceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeec
Q psy8823 205 VAENGVGKGTRRNIAVEVEF-APVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATA 282 (386)
Q Consensus 205 ~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 282 (386)
.+.|..+...+..+.+.|.. +|.+...+....+..|+.+.|.|.+ .|.|.+.+.|++++.. +..............
T Consensus 87 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~--~~~~~~~~~~~~~~~ 164 (217)
T 2vr9_A 87 VAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVP--LDDLKAMSFGASSRV 164 (217)
T ss_dssp EEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEE--ECCCCCC---CCCSE
T ss_pred EEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcC--CCcccccccccCCcE
Confidence 99998776445566777765 4445555566678899999999998 8999999999999987 432221111100000
Q ss_pred CceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 283 DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 283 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
.....+.|.|.++..+|+|.|+|.|.|..|....+..+.+...
T Consensus 165 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~ 207 (217)
T 2vr9_A 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207 (217)
T ss_dssp EEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred EecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence 0113457999999999999999999999999988766666543
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=177.26 Aligned_cols=177 Identities=25% Similarity=0.461 Sum_probs=133.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc------eEEeee-----EEEECCCCCCCCeEEEEEEecCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG------SIYRGS-----ILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~------~~~~~~-----~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+....+.+|+.++|.|.+.+.|.+.+.|++++..+..... ....+. .|.|.+++.+|+|.|+|.+.|..
T Consensus 16 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~ 95 (212)
T 2v9r_A 16 PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95 (212)
T ss_dssp CCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETT
T ss_pred CCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCC
Confidence 4566789999999999999999999999999988754321 111122 34556779999999999999987
Q ss_pred CCceeeeEEEEEEecc-eEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceee
Q psy8823 211 GKGTRRNIAVEVEFAP-VITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTD 287 (386)
Q Consensus 211 ~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 287 (386)
+...+..+.+.|...| .+...+....+..|+.+.|.|.+ .+.|.+.+.|++++.. +.... ++.. .+
T Consensus 96 g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~--l~~~~~~~~~---------~~ 164 (212)
T 2v9r_A 96 GEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSP--LDDKDERITI---------RG 164 (212)
T ss_dssp EEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEE--ECTTSTTEEE---------ET
T ss_pred CceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCcc--CCCCcceEEc---------cC
Confidence 7644566777776643 34444556678899999999998 8999999999999987 44322 2211 34
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceee-EEEEEEEecCCCC
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEK-TVELFESIIPVCP 329 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~~ 329 (386)
+.|.|.++..+|+|.|+|.|.|..|.... .+.|.|...|...
T Consensus 165 ~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~ 207 (212)
T 2v9r_A 165 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207 (212)
T ss_dssp TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHh
Confidence 58999999999999999999999998765 4899998777644
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=174.11 Aligned_cols=164 Identities=25% Similarity=0.328 Sum_probs=136.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.+..+...+..+.+.
T Consensus 25 p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 99 (218)
T 3k0w_A 25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD 99 (218)
T ss_dssp CCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEE
T ss_pred CCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEE
Confidence 45567889999999999999999999999999887543 2467999999999999999999998776556678888
Q ss_pred EEec---------------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 222 VEFA---------------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 222 v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
|... |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++.. +... .
T Consensus 100 V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~--~~~~--------------~ 163 (218)
T 3k0w_A 100 VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP--LTHE--------------T 163 (218)
T ss_dssp EECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEE--CTTC--------------C
T ss_pred EEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEE--CCCC--------------C
Confidence 8765 5666666777888999999999999999999999999887 3322 2
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCc-eeeEEEEEEEecC
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGT-SEKTVELFESIIP 326 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~p 326 (386)
...|.|.++..+|+|.|+|.|.|..|. .+..+.|.|...+
T Consensus 164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~ 204 (218)
T 3k0w_A 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204 (218)
T ss_dssp SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence 457999999999999999999999887 5567888776543
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=179.64 Aligned_cols=209 Identities=16% Similarity=0.234 Sum_probs=126.0
Q ss_pred CCcccchhHHHHHHHhhhcccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEE
Q psy8823 1 MESKGFIFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII 80 (386)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 80 (386)
|+....++++++++++........+.+...+....+.+|++|+|.|.+.+.+.+.+.|+|+........+....+.....
T Consensus 1 M~~~~~~ll~~~~l~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 80 (237)
T 3sob_L 1 MKKNIAFLLASMFVFSIATNAYADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSG 80 (237)
T ss_dssp -----------------------CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTT
T ss_pred CCcchhHHHHHHHHHHhhcccCccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCC
Confidence 55543333333333333333444566777778888999999999999998888889999965332211111111111111
Q ss_pred eccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEE
Q psy8823 81 RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLEC 157 (386)
Q Consensus 81 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C 157 (386)
.++++... ...++++|.|.+++.+|+|.|+|.+.+..+........|.|.. +|.+....+.. .+.+|+.++|.|
T Consensus 81 ~~~r~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~l~C 157 (237)
T 3sob_L 81 VPSRFSGS--GSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSD-EQLKSGTASVVC 157 (237)
T ss_dssp CCTTEEEE--EETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCH-HHHHHTEEEEEE
T ss_pred CCCcEEEE--cCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCCh-hhccCCceEEEE
Confidence 23455544 2346779999999999999999999765443334445666643 34333222111 123578899999
Q ss_pred Eeeee-C-CCeEEEEEcCeeeCCC-----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 158 FAGGH-P-TPRISWRRENNAILPT-----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 158 ~~~~~-~-~~~v~W~~~~~~~~~~-----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.+.+. | .+.++|++++..+... .+.......|.|.+...+|+|.|+|.+.|....
T Consensus 158 ~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 225 (237)
T 3sob_L 158 LLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 225 (237)
T ss_dssp EEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred EEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence 99874 4 4799999999877542 112223467899999999999999999997654
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-26 Score=192.99 Aligned_cols=236 Identities=19% Similarity=0.164 Sum_probs=165.6
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.+|.+... +....+.+|++++|.|.+.+. +.|++++..... .........|.|.+++.+|+|.|+|.+.|..+.
T Consensus 3 ~~P~i~~~-~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~ 76 (292)
T 4dkd_C 3 SIPVIEPS-VPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWT-LYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG 76 (292)
T ss_dssp -CCEEESC-CSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCE-ECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred CCceecCC-CCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceE-EeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence 34555544 345678999999999999773 999975532110 001112458999999999999999999997765
Q ss_pred ceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeE
Q psy8823 213 GTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289 (386)
Q Consensus 213 ~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
.+..+.|.|..+|. +...+....+.+|+.+.|.|.+.+ |. +.+.|++++... +....++... ....
T Consensus 77 -~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~-~~~~~~~~~~--------~~~~ 145 (292)
T 4dkd_C 77 -GSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRP-LMRHTNYSFS--------PWHG 145 (292)
T ss_dssp -CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCC-CCSSCCEECC--------SSSC
T ss_pred -cceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCc-cccCCccccc--------CCce
Confidence 36778888887775 344556677889999999999987 44 689999984331 3333332211 2334
Q ss_pred EEEeecccCCCeEEEEEEEcCCCcee-eEEEEEEEecCCCCC----CCCCceeecCcceeeeEEecCCC----CCccccc
Q psy8823 290 IRVITIEKRQYGSYICRAANKLGTSE-KTVELFESIIPVCPP----QTQPSELLPLRNVNMAVIFAEQP----TSWEPQR 360 (386)
Q Consensus 290 L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p~~~~----~~~~~~~~~~~~~~~~c~~~~~p----~~W~~~~ 360 (386)
|.|.++..+|+|.|+|.|.|..|... ..+.|.|...+..+| .+....+..|+.++|.|.+.+.| +.|.+++
T Consensus 146 L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~ 225 (292)
T 4dkd_C 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNN 225 (292)
T ss_dssp CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSS
T ss_pred EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCC
Confidence 99999999999999999999988664 478888886332222 23344456899999999997765 4788998
Q ss_pred ceeeeccc-------c---eeeeeeeeecccccCC
Q psy8823 361 KQLNCSSL-------L---YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 361 ~~l~~~~~-------~---~~~~i~~v~~~d~~~~ 385 (386)
..+..... + ..|.|.+|+.+|+..|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 260 (292)
T 4dkd_C 226 TKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260 (292)
T ss_dssp CCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEE
T ss_pred cccccCccceeccceeeeEEEEEECccChhcCeEE
Confidence 87653322 1 2699999999998765
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=171.87 Aligned_cols=180 Identities=19% Similarity=0.229 Sum_probs=127.1
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
.+.+.+|+.++|.|.+.|.|.+.+.|+++.......... ......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~~~~l~V 88 (202)
T 1vca_A 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEI 88 (202)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEE
T ss_pred cEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce-EeeEEEEEE
Confidence 345669999999999999999999999843221111111 112456999999999999999999998765 567888999
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCC---CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCC
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPP---PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 299 (386)
..+|..........+.+|+.++|.|.+.|.++ +++.|++++.. +.... ................|.|..+..+|
T Consensus 89 ~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~--l~~~~-~~~~~~~~~~~~~~~~l~i~~~~~d~ 165 (202)
T 1vca_A 89 YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHL--MKSQE-FLEDADRKSLETKSLEVTFTPVIEDI 165 (202)
T ss_dssp EBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEE--EEEEE-CCSCCSSCCCEEEEEEEEECCCGGGT
T ss_pred EeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeE--Ccccc-cccccCcCcceEEEEEEEEEeeeccC
Confidence 88775322112256789999999999998644 37999999987 32211 00000000012235667888899999
Q ss_pred CeEEEEEEEcCCCc-------eeeEEEEEEEecCC
Q psy8823 300 YGSYICRAANKLGT-------SEKTVELFESIIPV 327 (386)
Q Consensus 300 ~G~Y~C~a~n~~g~-------~~~~~~l~v~~~p~ 327 (386)
+|.|+|.|.|..|. .+.++.|.|.++|.
T Consensus 166 ~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 166 GKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp TCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred CCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 99999999999876 45678888887775
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=173.06 Aligned_cols=176 Identities=20% Similarity=0.350 Sum_probs=138.8
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.....+.|...|....+.+|+++.|.|.+.+.+.+.+.|++++..+.. ....+|.
T Consensus 14 ~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~-------------------------~~~~~L~ 68 (218)
T 3k0w_A 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN-------------------------GNTSELI 68 (218)
T ss_dssp -----CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTT-------------------------CCSSEEE
T ss_pred ccCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCC-------------------------CCCCEEE
Confidence 345667899999999999999999999999888889999998764411 0123899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC---------------CeeecCCCceEEEeCCccEEEEEEeeeeCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP---------------PVISDNSTRSLVVSEGQPVQLECFAGGHPT 164 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~ 164 (386)
|.+++.+|+|.|+|.+.+..+...+..+.|.|... |.+.. .+....+.+|+.+.|.|.+.+.|.
T Consensus 69 i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~G~~v~L~C~~~g~p~ 147 (218)
T 3k0w_A 69 FNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICV-EPTSQKLMPGSTLVLQCVAVGSPI 147 (218)
T ss_dssp ETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEE-CCCCEEECTTCCEEEECEEEBSSC
T ss_pred EccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEE-CCCceeecCCCcEEEEEEecccCC
Confidence 99999999999999999876655566778888765 23332 234567889999999999999999
Q ss_pred CeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 165 PRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
+.+.|++++..+.... ...|.|.+++.+|+|.|+|.+.|..+...+..+.|.|...+
T Consensus 148 ~~v~W~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~ 204 (218)
T 3k0w_A 148 PHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204 (218)
T ss_dssp CEEEEEETTEECTTCC-----SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred CeEEEEECCEECCCCC-----CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence 9999999998875543 35799999999999999999999888767778888886543
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=172.44 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=126.0
Q ss_pred EEEeCCccEEEEEEeeeeCCCe-EEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPR-ISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
..+.+|+.++|.|.+.+.|.+. +.|++++..+.... ..|.|.+++.+|+|.|+|.+.|.. .+..+.|.|.
T Consensus 17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~---~s~~~~l~V~ 87 (204)
T 3sgj_C 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA------SSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEVH 87 (204)
T ss_dssp SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS------SEEEESSCCGGGCEEEEEEETTSB---CCCCEEEEEE
T ss_pred eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc------cEEEEecccccCCEEEEEEeCCCc---ccccEEEEEe
Confidence 5688999999999999887765 99999998875443 679999999999999999998742 3467788888
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEec-CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
++|.+...+. ..+.+|+.++|.|.+.+. |.+.+.|++++..+... .....|.|.++..+|+|.
T Consensus 88 ~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~---------------~~~~~L~i~~v~~~D~G~ 151 (204)
T 3sgj_C 88 IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF---------------HHNSDFYIPKATLKDSGS 151 (204)
T ss_dssp CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------------EECCCEEESSCCGGGCEE
T ss_pred cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc---------------cCCceEEECcCCcccCEE
Confidence 8887655444 667789999999999776 45689999999872211 135679999999999999
Q ss_pred EEEEEEc-CCCceeeEEEEEEEecCCCC
Q psy8823 303 YICRAAN-KLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 303 Y~C~a~n-~~g~~~~~~~l~v~~~p~~~ 329 (386)
|+|.|.| ..+..+..+.|.|...|..|
T Consensus 152 Y~C~a~n~~~~~~s~~~~l~V~~~~~~P 179 (204)
T 3sgj_C 152 YFCRGLVGSKNVSSETVQITITQGLAVS 179 (204)
T ss_dssp EEEEEEETTEEEECCCEEEEEEC-----
T ss_pred EEEEEEeCCCceecCcEEEEEeCcCCCC
Confidence 9999999 45566678888888766544
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=173.62 Aligned_cols=193 Identities=22% Similarity=0.309 Sum_probs=137.2
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEec----cceeeecCCCcceEEEEEc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRD----SRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~ 101 (386)
+.+.+.+..+.+|++++|.|...+.+...+.|++++.......+. +.........+ +++... .+++|.|.
T Consensus 2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~-----~~~~L~i~ 76 (208)
T 3r4d_A 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SNGSLLFQ 76 (208)
T ss_dssp CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC-----TTSCEEEC
T ss_pred ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe-----cCCeEEEc
Confidence 455566677999999999999877778889999876533221111 11111111111 222222 22379999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
+++.+|+|.|+|.+.+......+..+.|.|..+ |.+..... . +.+|+.+.|.|.+.+.| +.+.|++++..+..
T Consensus 77 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~-~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~ 152 (208)
T 3r4d_A 77 MITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT-T--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQL 152 (208)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCS-S--CCTTCCEEEEEECSCTT-CEEEEEETTEECCC
T ss_pred cccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCc-e--EeeCCCEEEEEECCCCC-CceEEEECCEeCCC
Confidence 999999999999999875566677788888765 33333222 2 77899999999998865 79999999988765
Q ss_pred CCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceE
Q psy8823 179 TGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 179 ~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~ 228 (386)
...... .+..|.|.++..+|+|.|+|.+.|..+...+..+.|.|..+|..
T Consensus 153 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~ 204 (208)
T 3r4d_A 153 TERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH 204 (208)
T ss_dssp CSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred CCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence 544333 24789999999999999999999999998888999998887754
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-25 Score=174.88 Aligned_cols=179 Identities=17% Similarity=0.275 Sum_probs=119.7
Q ss_pred ceeeecCCcEEEEEE---EeeCCCCcEEEEecCCccccccccccCCceeEEecc-ceeeecCCCcceEEEEEcccCCCCC
Q psy8823 33 EQIKDIGGTVELKCS---VQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS-RFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~---~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
...+.+|++++|.|. +.+.|.+.|.|+|++..................... +.........+.++|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 356889999999996 446688899999988654322111111111111111 1111112234567999999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC----Cce-E
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT----GGS-I 183 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~----~~~-~ 183 (386)
|.|+|.+.|.. +..+..+.|.|..||.+... +....+.+|+.++|.|.+.|.|.|.++|+++++.+... ... .
T Consensus 82 G~Y~C~a~n~~-g~~~~~~~l~V~~p~~~~~~-~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~ 159 (203)
T 4fa8_A 82 GNYLCRMKLGE-TEVTKQEHLSVVKPLTLSVH-SERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK 159 (203)
T ss_dssp EEEEEEEEETT-EEEEEEEEEEEEEEEEEEEE-EEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEE
T ss_pred eEEEEEEEcCC-CcEEEEEEEEecCCceeeec-ceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEE
Confidence 99999998764 44567788888877766543 34455778999999999999999999999876554321 111 1
Q ss_pred Eeee---EEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 184 YRGS---ILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 184 ~~~~---~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
..++ .+.+.+++.+|+|.|+|.|.|..|..
T Consensus 160 ~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a 192 (203)
T 4fa8_A 160 EKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 192 (203)
T ss_dssp CTTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred eCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence 1222 34557899999999999999999973
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-26 Score=198.88 Aligned_cols=207 Identities=17% Similarity=0.209 Sum_probs=151.9
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eEE
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIY 184 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~ 184 (386)
|.|.|+|...+. ...+.+.+..+|.+... +....+.+|+.++|.|.+.|.|.+.+.|++++..+..... ...
T Consensus 136 ~~~~~~C~~~~~-----l~~l~~~~c~~P~i~~~-~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~ 209 (347)
T 2ifg_A 136 PEQKLQCHGQGP-----LAHMPNASCGVPTLKVQ-VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGL 209 (347)
T ss_dssp GGGCCCCSSSSC-----SSCCCCTTCCCCEEEEE-CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCS
T ss_pred cccCCCCCCChH-----HhcCCcccCCCCceecc-CCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceec
Confidence 568999976431 11122222235554433 2345688999999999999999999999999876432211 122
Q ss_pred eeeEEEECCCCCCCCe-EEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCC
Q psy8823 185 RGSILKIPQITKEDRG-TYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED 263 (386)
Q Consensus 185 ~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~ 263 (386)
....|.|.+++.+|+| .|+|.+.|..+. .+..+.+.|.++|.+ .......|+.++|.|.+.|.|.|.+.|++++
T Consensus 210 ~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~-~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g 284 (347)
T 2ifg_A 210 PSLGLTLANVTSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG 284 (347)
T ss_dssp SEEEEEEESCCSTTTTCCEEECCEETTEE-CCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETT
T ss_pred ccceEEEeeCChHHCCCeEEEEEEcCCCC-EEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCC
Confidence 4668999999999999 999999998776 466788888888876 1223457899999999999999999999999
Q ss_pred eeeeeecCceeEEeeee--ecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 264 TQQVLTNNQHYSISHFA--TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 264 ~~~~~~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.. +............ .......+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 285 ~~--l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 285 SV--LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp EE--CCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred EE--CCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 88 4433332221111 1222347789999999999999999999999999999999886544
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=170.58 Aligned_cols=170 Identities=16% Similarity=0.268 Sum_probs=124.8
Q ss_pred cceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|+.+.|.|.+.. .|.+.|+|++++..+. .+.++.+..+...+..+|.|.+++.+|+|.
T Consensus 10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~--------------~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~ 75 (207)
T 3rbs_A 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF--------------EGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75 (207)
T ss_dssp EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEEC--------------SSSSCEEEECTTTCEEEEEESCCCGGGCEE
T ss_pred CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECc--------------cCCCEEEEEeCCCCEEEEEECCCChhhCEE
Confidence 3456889999999999864 6889999999987542 233444444444566789999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEe---------------------cCCeeecCCCceEEEeCCccEEEEEEeeee-CCCeEE
Q psy8823 111 YRCQVIIGINNKISAEVDLQVR---------------------RPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPRIS 168 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~ 168 (386)
|+|.+.|. .......+.+. .+|.+.... ...+.+|+.+.|.|.+.|. |.+.++
T Consensus 76 Y~C~a~Ng---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~v~~g~~v~l~C~v~g~~P~p~i~ 150 (207)
T 3rbs_A 76 YTFQLQDG---KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIV 150 (207)
T ss_dssp EEEEEEET---TEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE--EEEEETTTEEEEEEEEESCCTTCEEE
T ss_pred EEEEEECC---CeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC--CcEEcCCCcEEEEEEEeCCCCCCEEE
Confidence 99999872 22222232211 145443322 3578899999999999998 899999
Q ss_pred EEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 169 WRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 169 W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
|+|++..+........ ....|.|.+++.+|+|.|+|.+.|..|. ....+.|.
T Consensus 151 W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~ 204 (207)
T 3rbs_A 151 WYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLV 204 (207)
T ss_dssp EEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEEC
T ss_pred EEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCE-EEEEEEEe
Confidence 9999998866443222 2457999999999999999999999887 44444443
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=170.49 Aligned_cols=170 Identities=18% Similarity=0.254 Sum_probs=131.4
Q ss_pred EeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 147 VSEGQPVQLECFAGGH-PTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
...++.+.|.|.+.+. |.+.++|++++..+......... ...|.|.+++.+|+|.|+|.+.|..+. ....+.+.
T Consensus 14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~ 92 (212)
T 2r15_A 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLS 92 (212)
T ss_dssp EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEEC
T ss_pred EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcc-eEEEEEEE
Confidence 3367788899988774 57899999999988765544322 245999999999999999999997765 34555555
Q ss_pred EEe--------------------cce-EeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeee
Q psy8823 222 VEF--------------------APV-ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280 (386)
Q Consensus 222 v~~--------------------~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 280 (386)
|.. .|. +...+....+.+|+.+.|.|.+.|+|.|.+.|++++.. +....++......
T Consensus 93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~~~~~~ 170 (212)
T 2r15_A 93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LAQTDHCNLKFEA 170 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEE--ECCCSSEEEEEET
T ss_pred EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeE--CccCCCEEEEEcC
Confidence 432 233 33344556788999999999999999999999999988 5555554433211
Q ss_pred ecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 281 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 171 ----~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 209 (212)
T 2r15_A 171 ----GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209 (212)
T ss_dssp ----TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----CCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence 124689999999999999999999999999999998886
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-24 Score=170.20 Aligned_cols=174 Identities=19% Similarity=0.317 Sum_probs=135.1
Q ss_pred cCCCceEEEeCCccEEEEEE-eeeeCC-CeEEEEEcCeeeCCC--CceE--EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 139 DNSTRSLVVSEGQPVQLECF-AGGHPT-PRISWRRENNAILPT--GGSI--YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 139 ~~~~~~~~~~~g~~v~l~C~-~~~~~~-~~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
...+..+.+.+|+.+.|.|. +.+.|. +.+.|++++..+... .... ..+..|.|.+++.+|+|.|+|.+.+..+.
T Consensus 12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~ 91 (201)
T 3s97_C 12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSIT 91 (201)
T ss_dssp SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGT
T ss_pred cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCC
Confidence 34456678999999999999 888888 999999998776422 1111 13567999999999999999999986644
Q ss_pred cee--eeEEEEEE-------ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecC
Q psy8823 213 GTR--RNIAVEVE-------FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283 (386)
Q Consensus 213 ~~~--~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 283 (386)
... ..+.+.+. .+|.+........+..|+.+.|.|.+.|.|.+.+.|++++.. +.......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~-------- 161 (201)
T 3s97_C 92 KSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP--MPSTAEIS-------- 161 (201)
T ss_dssp EEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBC--CCTTCEEE--------
T ss_pred cchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCc--CCCceeec--------
Confidence 222 23343332 455566555577788999999999999999999999999986 44332221
Q ss_pred ceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 284 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.....|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 162 -~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 162 -TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp -TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -CCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 135689999999999999999999999999999998875
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-24 Score=165.22 Aligned_cols=168 Identities=19% Similarity=0.326 Sum_probs=131.1
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCc-EEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.+.+.+....+.+|++++|.|.+.+.+.+. +.|++++..+. ..+.+|.|
T Consensus 5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~--------------------------~~~~~L~i 58 (175)
T 1fnl_A 5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------------------------SQASSYFI 58 (175)
T ss_dssp CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE--------------------------SSCSEEEE
T ss_pred CCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEcc--------------------------CCceEEEE
Confidence 4578888888888899999999999998776655 89999875431 01238999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPT 179 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~ 179 (386)
.+++.+|+|.|+|.+.+. ..+..+.|.|..++...... ...+.+|+.++|.|.+.+.+++ .+.|++++..+..
T Consensus 59 ~~~~~~d~G~Y~C~~~n~---~~s~~~~l~V~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~- 132 (175)
T 1fnl_A 59 DAATVNDSGEYRCQTNLS---TLSDPVQLEVHIGWLLLQAP--RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY- 132 (175)
T ss_dssp SSCCGGGCEEEEEECSSS---CCCCCEEEEEECSSEEEECS--CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-
T ss_pred eCCCcccCEEEEEEeeCC---cccccEEEEEeCCCceeeCC--CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-
Confidence 999999999999998752 23566778887665544332 2458899999999999876654 9999999987632
Q ss_pred CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 180 GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 180 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
......|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..
T Consensus 133 ---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 133 ---FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp ---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ---CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 234678999999999999999999997665566677777754
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=166.01 Aligned_cols=180 Identities=13% Similarity=0.188 Sum_probs=128.1
Q ss_pred eeeeccceee-ecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIK-DIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v-~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
+.+.|....+ .+|++++|.|.+.|.|.+.+.|++...... .. +... ...+..|.|.+++.
T Consensus 3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--------~~-------~~~~----~~~~~~L~I~~v~~ 63 (202)
T 1vca_A 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--------NG-------KVTN----EGTTSTLTMNPVSF 63 (202)
T ss_dssp EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--------SS-------EEEE----ETTEEEEEESSCCG
T ss_pred EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--------cc-------eEEE----cCCccEEEECcCCH
Confidence 5566666554 599999999999988888899998432110 00 0000 11244799999999
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC---CeEEEEEcCeeeCCCCc-
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT---PRISWRRENNAILPTGG- 181 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~- 181 (386)
+|+|.|+|.+.|..+ ..+..+.|.|..+|......+. ..+.+|+.++|.|.+.+.++ +.++|++++..+.....
T Consensus 64 ~D~G~Y~C~a~n~~~-~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~ 141 (202)
T 1vca_A 64 GNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL 141 (202)
T ss_dssp GGCSEEEEEEEETTE-EEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEEEEECCc-eEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccc
Confidence 999999999998753 4577888999877643322122 35789999999999987644 37999999987642211
Q ss_pred -------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc------eeeeEEEEEEecce
Q psy8823 182 -------SIYRGSILKIPQITKEDRGTYYCVAENGVGKG------TRRNIAVEVEFAPV 227 (386)
Q Consensus 182 -------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~------~~~~~~l~v~~~p~ 227 (386)
.......|.|.....+|.|.|+|+|.|..+.. ....+.|.|+++|.
T Consensus 142 ~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 142 EDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp SCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred cccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 12234557888888889999999999976642 45678899999885
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=168.66 Aligned_cols=170 Identities=18% Similarity=0.315 Sum_probs=132.2
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCc-EEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.+.+.|....+.+|++++|.|.+.+.+.+. +.|++++..+.. . ..+|.|
T Consensus 5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~---------------~-----------~~~L~i 58 (204)
T 3sgj_C 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS---------------Q-----------ASSYFI 58 (204)
T ss_dssp -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESC---------------C-----------SSEEEE
T ss_pred CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEccc---------------C-----------ccEEEE
Confidence 3567888888888899999999999999876655 999998754311 0 138999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCCeEEEEEcCeeeCCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPRISWRRENNAILPT 179 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~ 179 (386)
.+++.+|+|.|+|.+.+ ...+..+.|.|..+|.+..... ..+.+|+.++|.|.+.+. |.+.+.|++++..+..
T Consensus 59 ~~v~~~D~G~Y~C~a~n---~~~s~~~~l~V~~~p~~~~~~~--~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~- 132 (204)
T 3sgj_C 59 DAATVDDSGEYRCQTQL---STLSDPVQLEVHIGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY- 132 (204)
T ss_dssp SSCCGGGCEEEEEEETT---SBCCCCEEEEEECSSEEEECSC--SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-
T ss_pred ecccccCCEEEEEEeCC---CcccccEEEEEecCceEecCCc--eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-
Confidence 99999999999999864 3445677888887776554433 468899999999999655 5678999999987632
Q ss_pred CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 180 GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 180 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
......|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|
T Consensus 133 ---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~ 176 (204)
T 3sgj_C 133 ---FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176 (204)
T ss_dssp ---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred ---ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence 23456899999999999999999999655446677888887655
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=178.87 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=114.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+.|+...|.+|+++.|.|.+....+..+.|.-.-... .. ...+.....|.|.+++.+
T Consensus 2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~------------------~~---~~~g~~~~~~~l~~v~~~ 60 (291)
T 1mq8_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK------------------EL---LLPGNNRKVYELSNVQED 60 (291)
T ss_dssp EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCC------------------CC---CCSCSSEEEEEEESCCSC
T ss_pred eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCc------------------cc---ccCCCceEEEEEEecccC
Confidence 456677888999999999999974444448885421110 00 000112225788888753
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC--eEEEEEcCeeeCCCCce-
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP--RISWRRENNAILPTGGS- 182 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~--~v~W~~~~~~~~~~~~~- 182 (386)
|.|+|++.. .+...++.+.|.|+.+|...........+.+|+.++|.|.+.+. |.. .|+|+|++..+......
T Consensus 61 --~~y~C~~~~-~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~ 137 (291)
T 1mq8_A 61 --SQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG 137 (291)
T ss_dssp --CCCEEEEEC-SSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCB
T ss_pred --CeEEEEEEc-CCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCC
Confidence 469999864 34566788899999888655444433347789999999999665 443 58999999776422210
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCCCC-------ceeeeEEEEEEecceEeeC-CCcccccCCCcEEEEEEEEecCC
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGVGK-------GTRRNIAVEVEFAPVITVP-KPRLGQALQYDMDLECHVEAYPP 254 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-------~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~ 254 (386)
......|.+...+.+|.+.|+|+|.+..+. ..+....|.|+++|..... .....+.+|+.++|.|.+.|+|+
T Consensus 138 ~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P 217 (291)
T 1mq8_A 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP 217 (291)
T ss_dssp TTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC---------------------------------
T ss_pred CCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCC
Confidence 112346777777777777999999986442 2356678889888643211 11225678999999999999866
Q ss_pred C---eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeec---cc--CCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 255 P---AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITI---EK--RQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 255 ~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~---~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
+ .+.|++++.. +...... .+..+.+... .. ++.+.|+|.|.|.....++...|.|...|
T Consensus 218 ~~~~~v~w~~~g~~--l~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~ 284 (291)
T 1mq8_A 218 VSEAQVHLALGDQR--LNPTVTY-----------GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccEEEEEECCEe--cCceeee-----------cCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence 5 5899999887 3321111 1112222222 23 44667889998866667778888877655
Q ss_pred C
Q psy8823 327 V 327 (386)
Q Consensus 327 ~ 327 (386)
.
T Consensus 285 ~ 285 (291)
T 1mq8_A 285 A 285 (291)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=164.68 Aligned_cols=167 Identities=15% Similarity=0.277 Sum_probs=129.5
Q ss_pred EEEeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTP--RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
..+.+|+.++|.|.+.+.+.+ .+.|++++..+...... .....|.|. +.+|+|.|+|.+.|. ....+.|.|
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V 80 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-GQKTEFKVD--SDDQWGEYSCVFLPE----PMGTANIQL 80 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-CSEEEEEEC--GGGCCEEEEEEEEST----TSCEEEEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-CCcEEEEEe--chhhCeEEEEEEECC----cCcEEEEEE
Confidence 357889999999999887766 89999999887554322 223456666 689999999999982 235678888
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecC-CCeeEEEe---CCeeeeee-cCceeEEeeeeecCceeeeEEEEeecc-
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYP-PPAIVWIK---EDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIE- 296 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~- 296 (386)
.++|.+...+....+.+|+.+.|.|.+.|.| .+.+.|++ ++...... ...++.+... .....|.|.++.
T Consensus 81 ~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~ 155 (184)
T 3b5h_A 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS-----QGRSELHIENLNM 155 (184)
T ss_dssp CCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEE-----TTEEEEEECSCCT
T ss_pred ecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEec-----CCeeEEEEeeccc
Confidence 9999888777777788999999999999999 78999999 44442211 1233333211 134689999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.+|+|.|+|.|.|..|....++.|.|.
T Consensus 156 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 156 EADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp TTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cccCceEEEEEEeCCCcceEEEEEEEe
Confidence 999999999999999999999888875
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-25 Score=193.73 Aligned_cols=232 Identities=14% Similarity=0.156 Sum_probs=146.4
Q ss_pred ccEEEEEEeeee-C-CCeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 151 QPVQLECFAGGH-P-TPRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 151 ~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
+.+.|.|.+.+. | .+.++|+++|..+..... .....+.|.|.+...+|+|.|+|.+.|..+. ....+.
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~ 103 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTK 103 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE-EEEEEC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCC-cceeee
Confidence 699999999886 3 368999999988754321 1112346788888888999999999997654 222222
Q ss_pred EE---EEecceE-eeCCCcccccCCCcEEEEEEEEec-CCC---eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 220 VE---VEFAPVI-TVPKPRLGQALQYDMDLECHVEAY-PPP---AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 220 l~---v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~g~-p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
+. +...|.+ ...+....+.+|+.+.|.|.+.|. |.+ .+.|++++... +........ ..........+.|.
T Consensus 104 ~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~-~~~~~~~~~-~~~~g~~~~~~~L~ 181 (323)
T 2wqr_A 104 KCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKP-VNHSTRKEE-KQRNGTLTVTSTLP 181 (323)
T ss_dssp CCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCC-CCCCCCEEE-ECTTSCEEEEEEEE
T ss_pred cCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcc-cccccCCCc-cCCCCCEEEEEEEE
Confidence 10 1123433 333444567789999999999886 455 89999976331 221111110 00111112456899
Q ss_pred EeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCCCCC----CCCceeecCcceeeeEEecC-CC----CCcccccce
Q psy8823 292 VITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVCPPQ----TQPSELLPLRNVNMAVIFAE-QP----TSWEPQRKQ 362 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~----~~~~~~~~~~~~~~~c~~~~-~p----~~W~~~~~~ 362 (386)
|.++..+|+|.|+|.|.|..+.......+.+......+|. ........|+.++|.|.+.+ .| ++|++||+.
T Consensus 182 I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~ 261 (323)
T 2wqr_A 182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQ 261 (323)
T ss_dssp CCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred ECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEE
Confidence 9999999999999999998754433333322100111111 11112223889999999966 33 689999998
Q ss_pred eeeccc------------c---eeeeeeeeecccccCC
Q psy8823 363 LNCSSL------------L---YQCVLPLVDRQDRLMH 385 (386)
Q Consensus 363 l~~~~~------------~---~~~~i~~v~~~d~~~~ 385 (386)
|..+.. + ..|.|..+..+|+..|
T Consensus 262 l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y 299 (323)
T 2wqr_A 262 LPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEF 299 (323)
T ss_dssp CCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCE
T ss_pred CCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEE
Confidence 865421 1 1589999999888754
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=168.87 Aligned_cols=183 Identities=12% Similarity=0.107 Sum_probs=126.6
Q ss_pred CceEEEeCC--ccEEEEEEeeeeCCCeEEEEEc---CeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 142 TRSLVVSEG--QPVQLECFAGGHPTPRISWRRE---NNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 142 ~~~~~~~~g--~~v~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+..+.+.+| ++++|.|.+.+ |.+.++|+++ +..+....... .....|.|.+++.+|+|.|+|.+.|..+...+
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s 92 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS 92 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEEC
T ss_pred ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEE
Confidence 456788899 99999999976 7789999985 44333222222 23457999999999999999999986554344
Q ss_pred eeEEEEEEe--cceEeeCCC-cccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCce-eEEeeeeec--Cceee
Q psy8823 216 RNIAVEVEF--APVITVPKP-RLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQH-YSISHFATA--DEFTD 287 (386)
Q Consensus 216 ~~~~l~v~~--~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 287 (386)
..+.|.|.. +|.+...+. ...+.+|+.++|.|.+.|.|. +.+.|++++.. +..... ......... .....
T Consensus 93 ~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 170 (213)
T 2x1w_L 93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK--HQHKKLVNRDLKTQSGSEMKKFL 170 (213)
T ss_dssp CCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSS--CCSEEEEEEEECCCSSCSCEEEE
T ss_pred EEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCc--cceEEEeccccccccCccceeee
Confidence 446777743 344444333 347889999999999998654 47999999876 211111 000000000 02235
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...|.
T Consensus 171 ~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 210 (213)
T 2x1w_L 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI 210 (213)
T ss_dssp EEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred EEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence 6899999999999999999999999999999999987664
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=186.40 Aligned_cols=219 Identities=17% Similarity=0.268 Sum_probs=141.7
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEc--CeeeC-----------------CCCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRRE--NNAIL-----------------PTGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|+|+ +..+. ...+... ....|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (344)
T 1za6_B 8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLR 87 (344)
T ss_dssp CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCC
Confidence 345788999999999998763 578999997 33220 0111111 12479999999
Q ss_pred CCCCeEEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeee
Q psy8823 196 KEDRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLT 269 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~ 269 (386)
.+|+|.|+|.+.|..+. ......|.|. .+|.+....+...+.+|+.++|.|.+.|. |. +.+.|++++......
T Consensus 88 ~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~ 166 (344)
T 1za6_B 88 SEDTAVYFCTRSLNMAY-WGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH 166 (344)
T ss_dssp GGGCEEEEEEETTTTCE-ECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEE
T ss_pred cccCEEEEEEEecCcce-ecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCcee
Confidence 99999999999985432 3344567776 34555544444556789999999999987 64 699999998752111
Q ss_pred cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE--------------------ecCCCC
Q psy8823 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES--------------------IIPVCP 329 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~--------------------~~p~~~ 329 (386)
..... ..........+.|.|.++..+| |.|+|.|.|..+.......+.+. .....+
T Consensus 167 ~~~~~---~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (344)
T 1za6_B 167 TFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPRE 242 (344)
T ss_dssp ECCCE---ECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBC
T ss_pred ECCCe---ECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcC
Confidence 00000 0011112235689999998888 99999999999875443332210 001111
Q ss_pred CC----CCCceeecCcceeeeEEecCC-C----CCcccccceeeec
Q psy8823 330 PQ----TQPSELLPLRNVNMAVIFAEQ-P----TSWEPQRKQLNCS 366 (386)
Q Consensus 330 ~~----~~~~~~~~~~~~~~~c~~~~~-p----~~W~~~~~~l~~~ 366 (386)
|. .+......++.++|.|.+.|. | ++|.+||+.+..+
T Consensus 243 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~ 288 (344)
T 1za6_B 243 PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY 288 (344)
T ss_dssp CEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSE
T ss_pred CEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCc
Confidence 11 112223456779999999773 3 5899999987643
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=170.85 Aligned_cols=194 Identities=18% Similarity=0.334 Sum_probs=139.2
Q ss_pred hcccccCCeeeeec----cceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCc
Q psy8823 18 LTTAQRTPTISYIS----QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTAS 93 (386)
Q Consensus 18 ~~~~~~~p~i~~~~----~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (386)
......+|.+...+ ....+.+|+++.|.|.+.+.+.+.+.|++++..+...... ..... ..
T Consensus 9 ~~~~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~-----------~~~~~----~~ 73 (231)
T 3ojm_B 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI-----------GGYKV----RN 73 (231)
T ss_dssp ----CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGST-----------TCCEE----EG
T ss_pred ccCCccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccc-----------cceee----ec
Confidence 33445567776655 6677999999999999998888899999988654211000 00011 11
Q ss_pred ceEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC----CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEE
Q psy8823 94 STYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP----PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISW 169 (386)
Q Consensus 94 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W 169 (386)
.+.+|.|.+++.+|+|.|+|.+.+..+ .....+.|.|... |......+....+.+|+.+.|.|.+.+.|.+.+.|
T Consensus 74 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W 152 (231)
T 3ojm_B 74 QHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152 (231)
T ss_dssp GGTEEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEE
T ss_pred CcceEEEecCCcccCEEEEEEEecccC-cccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEE
Confidence 234899999999999999999987644 3456677777653 33333345667889999999999999999999999
Q ss_pred EE----cCeeeCCCCceEE-----------eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceE
Q psy8823 170 RR----ENNAILPTGGSIY-----------RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 170 ~~----~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~ 228 (386)
++ ++..+........ ....|.|.++..+|+|.|+|.+.|..+. ....+.|.|..+|..
T Consensus 153 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ-ANQSAWLTVLPKQQA 225 (231)
T ss_dssp EEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCC--
T ss_pred EECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccce-EeeEEEEEEecCCCC
Confidence 99 6665543332111 1346999999999999999999999887 577888888877653
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-24 Score=172.77 Aligned_cols=172 Identities=20% Similarity=0.316 Sum_probs=131.3
Q ss_pred CceEEEeCCccEEEEEEeeeeC----CCeEEEEEc----------------CeeeCC-----CCceEE-------eeeEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP----TPRISWRRE----------------NNAILP-----TGGSIY-------RGSIL 189 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~----------------~~~~~~-----~~~~~~-------~~~~l 189 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++ +..... ..+... ....|
T Consensus 7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 86 (214)
T 3jz7_A 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI 86 (214)
T ss_dssp EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence 3456788999999999998776 468999984 322221 111111 24579
Q ss_pred EECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeee
Q psy8823 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVL 268 (386)
Q Consensus 190 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~ 268 (386)
.|.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+........+..|+.+.|.|.+ .|.|.+.+.|++++....+
T Consensus 87 ~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~ 165 (214)
T 3jz7_A 87 NVTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM 165 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCC
T ss_pred EEccCChhhCeEEEEEEEeCCCc-cccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCcc
Confidence 99999999999999999998775 567888999888875544444457889999999999 8999999999996543223
Q ss_pred ecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 269 TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
...... ......|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 166 ~~~~~~---------~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 166 PTPWLA---------EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211 (214)
T ss_dssp CGGGGG---------GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred Ccccee---------ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence 222111 1135589999999999999999999999999999998886
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=163.81 Aligned_cols=178 Identities=17% Similarity=0.209 Sum_probs=128.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...|.. .+.+|++|+|.|.+.+ +.+.+.|+|++..+... ...........+|.|.+
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-----------------~~~~~~~~~~~~L~i~~ 64 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD-----------------RQNPLEPKNKARFSIPS 64 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE-----------------EECCCSSSSEEEEEESS
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc-----------------ccccccCCceEEEEecc
Confidence 46788888777 7899999999999986 66789999988654210 00001112345899999
Q ss_pred cCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.|..+ ...+..+.|.|.. +|.+..... ..+.+|+.++|.|.+.+. ++.+.|+|++..+..
T Consensus 65 v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~--~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~ 141 (196)
T 3p2t_A 65 MTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPS--PLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPL 141 (196)
T ss_dssp CCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESC--SEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGG
T ss_pred CCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCc--ceecCCCeEEEEEecCCC-CCEEEEEeCCCcccc
Confidence 999999999999998765 3456677788764 344433222 257899999999999774 458999999886643
Q ss_pred CCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCC----CceeeeEEEEE
Q psy8823 179 TGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVG----KGTRRNIAVEV 222 (386)
Q Consensus 179 ~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~----~~~~~~~~l~v 222 (386)
.... ......|.|.+++.+|+|.|+|.+.|..+ ...+..+.|.|
T Consensus 142 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 142 LCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp GSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred eeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 3221 12456899999999999999999999765 22344555554
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.91 E-value=9.4e-25 Score=176.21 Aligned_cols=180 Identities=19% Similarity=0.356 Sum_probs=133.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC------------CCCceEEeeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL------------PTGGSIYRGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~------------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...+.......|.|.+++.+|+|.|+|.+.+.
T Consensus 11 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 90 (209)
T 1nbq_A 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE 90 (209)
T ss_dssp CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred CCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecC
Confidence 455668899999999999988889999999876521 11223334578999999999999999999997
Q ss_pred CCC-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEee--eeecCce
Q psy8823 210 VGK-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISH--FATADEF 285 (386)
Q Consensus 210 ~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~ 285 (386)
.+. ..+..+.|.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|++++.. +.......... .......
T Consensus 91 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~--~~~~~~~~~~~~~~~~~~~~ 168 (209)
T 1nbq_A 91 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV--MPTNPKSTRAFSNSSYVLNP 168 (209)
T ss_dssp TSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCC--CCSCSSSSSSCTTCCCCCCT
T ss_pred CCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCee--CCCccccceeeeccceEEcC
Confidence 653 2456788888888876655555667889999999997 8999999999999987 33322110000 0000011
Q ss_pred eeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEEEEEE
Q psy8823 286 TDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVELFES 323 (386)
Q Consensus 286 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~ 323 (386)
..+.|.|.++..+|+|.|+|.|.|..|... ..+.|.|.
T Consensus 169 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 169 TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp TTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred CcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 357899999999999999999999999884 44555543
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=165.41 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=113.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...|.. .+.+|++|+|.|.+.+.+. .+.|+|++..+... . + .......+..|.|.+
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~------------~--~---~~~~~~~~~~L~i~~ 64 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWD------------T--Q---NPLEPKNKARFSIPS 64 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSE------------E--E---CCCSSTTEEEEEESS
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcc------------c--c---cccCCccccEEEecc
Confidence 56888888764 7899999999999986655 89999988654210 0 0 001123456899999
Q ss_pred cCCCCCeEEEEEeEEcccc-eeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGINN-KISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.+..+. ..+..+.|.|.. +|.+... + ...+.+|+.++|.|.+.+.| +.+.|+|++..+..
T Consensus 65 v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~-~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~ 141 (196)
T 2d3v_A 65 MTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSAL-P-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLS 141 (196)
T ss_dssp CCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-------------CEEEEEESSCC-SEEEEEEC---CCE
T ss_pred CChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEcc-C-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccc
Confidence 9999999999999876442 335667788876 3444433 2 24678999999999998887 89999999987642
Q ss_pred CCce--E----EeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 179 TGGS--I----YRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 179 ~~~~--~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.... . .....|.|.+++.+|+|.|+|.+.|..+
T Consensus 142 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 142 WTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred cccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence 2111 0 1236899999999999999999998653
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=169.06 Aligned_cols=191 Identities=19% Similarity=0.263 Sum_probs=136.9
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
..+...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.... ............++.... .+|.|.+++
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~------~~L~i~~v~ 73 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALV--CYNSQITAPYADRVTFSS------SGITFSSVT 73 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEE--EETTEECGGGTTTEEEET------TEEEESCCC
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEE--ecCCcccccccCcEEeec------eeEEEcccC
Confidence 456677778889999999999999987888999999886531100 000000000122333221 489999999
Q ss_pred CCCCeEEEEEeEEccc-ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEE-eeeeCCCeEEEEEcCe-eeCCCCc
Q psy8823 105 ETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECF-AGGHPTPRISWRRENN-AILPTGG 181 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~-~~~~~~~~v~W~~~~~-~~~~~~~ 181 (386)
.+|+|.|+|.+.+..+ ...+..+.|.|..+|....... ...+.+|+.++|.|. +.+.|.+.+.|++++. .+.....
T Consensus 74 ~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~ 152 (212)
T 1f97_A 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV-PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152 (212)
T ss_dssp GGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEEC-CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC----
T ss_pred cccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCC-ccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccc
Confidence 9999999999998654 2446778888888776543322 245889999999999 6899999999999998 6654322
Q ss_pred e---------E--EeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEe
Q psy8823 182 S---------I--YRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEF 224 (386)
Q Consensus 182 ~---------~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~ 224 (386)
. . .....|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 153 KTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp -CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 1 1 125679999999999999999999998875 45667777653
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=171.27 Aligned_cols=181 Identities=19% Similarity=0.354 Sum_probs=129.9
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
....+.+|+++.|.|.+.+.+.+.+.|++++..+...... ..... .....+|.|.+++.+|+|.|
T Consensus 23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~-----------~~~~~----~~~~~~L~i~~v~~~d~G~Y 87 (241)
T 3grw_A 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-----------GGIKL----RHQQWSLVMESVVPSDRGNY 87 (241)
T ss_dssp CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGST-----------TCCEE----EGGGTEEEECSCCGGGCEEE
T ss_pred cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcc-----------cceee----eccceEEEEEeCCcccCEEE
Confidence 3566899999999999998888899999988654221000 00011 11233899999999999999
Q ss_pred EEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEE----cCeeeCCCCceE
Q psy8823 112 RCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRR----ENNAILPTGGSI 183 (386)
Q Consensus 112 ~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~----~~~~~~~~~~~~ 183 (386)
+|.+.+..+ .....+.|.|.. +|......+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.......
T Consensus 88 ~C~~~~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~ 166 (241)
T 3grw_A 88 TCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 166 (241)
T ss_dssp EEEEEETTE-EEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCC
T ss_pred EEEEeecCC-ceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCcee
Confidence 999987644 345667777765 23444444556678899999999999999999999999 676654443211
Q ss_pred ------------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEe
Q psy8823 184 ------------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229 (386)
Q Consensus 184 ------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~ 229 (386)
.....|.|.++..+|+|.|+|.+.|..+. .+..+.|.|..+|...
T Consensus 167 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~ 223 (241)
T 3grw_A 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAE 223 (241)
T ss_dssp EEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEC-------
T ss_pred eeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcce-EEEEEEEEecCCCCCC
Confidence 13567999999999999999999999887 5678888888777543
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=173.49 Aligned_cols=194 Identities=18% Similarity=0.245 Sum_probs=132.4
Q ss_pred eeccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCcccc--cccc-ccCCceeE----Eeccceeeec-CCCcceE
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVT--EPLP-ISTGSSLI----IRDSRFAIRY-DTASSTY 96 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~--~~~~-~~~~~~~~----~~~~~~~~~~-~~~~~~~ 96 (386)
..+....+.+|++++|.|.+.+.+ .+.+.|++++..... .... ...+.... ...+++.+.. +...+++
T Consensus 5 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 84 (214)
T 3jz7_A 5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDA 84 (214)
T ss_dssp -CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBC
T ss_pred cCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcc
Confidence 344566689999999999998765 358999996543210 0011 11111111 0123333322 2234566
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCee
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNA 175 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~ 175 (386)
+|.|.+++.+|+|.|+|.+.+..+ ..+..+.|.|..+|...... ....+.+|+.++|.|.+ .+.|.+.+.|++++..
T Consensus 85 ~L~i~~v~~~D~G~Y~C~~~~~~~-~~~~~~~l~V~~~p~~~~~~-~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~ 162 (214)
T 3jz7_A 85 SINVTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCF-VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDS 162 (214)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEECCCBSCEEE-EESCCBTTCCEEEEEECSBCCSSCEEEEEECSTT
T ss_pred cEEEccCChhhCeEEEEEEEeCCC-ccccEEEEEEEcCCCCceee-eecceecCCcEEEEecCCCCCCCCEEEEEECCCC
Confidence 899999999999999999987644 44777889998877654321 12236789999999999 8999999999996433
Q ss_pred --eCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec
Q psy8823 176 --ILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA 225 (386)
Q Consensus 176 --~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~ 225 (386)
+.........+..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+
T Consensus 163 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~P 213 (214)
T 3jz7_A 163 QTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGS-DQCMLRLDVVPP 213 (214)
T ss_dssp CCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEECCBCC
T ss_pred CccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCc-EEEEEEEEEeCC
Confidence 2222122223568999999999999999999999887 466777777543
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-24 Score=171.31 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=125.9
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+...+ ...+.+|++|+|.|.+.+.+.+.+.|+|.........+............+++.... ..++++|.|.+++.
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~ 79 (213)
T 3mj8_L 3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQA 79 (213)
T ss_dssp CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCCh
Confidence 344445 677999999999999998888899999954322111111111111111233444433 34677999999999
Q ss_pred CCCeEEEEEeEEccc--ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeC-C-CeEEEEEcCeeeC
Q psy8823 106 TDAGYYRCQVIIGIN--NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHP-T-PRISWRRENNAIL 177 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~-~~v~W~~~~~~~~ 177 (386)
+|+|.|+|.+.+..+ ......+.|.|. .+|.+....... .+.+|+.++|.|.+.+.+ + +.++|+++|..+.
T Consensus 80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~ 158 (213)
T 3mj8_L 80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSS-EELKTNQATLVCMINGFYPADVAVTWEADGTPIT 158 (213)
T ss_dssp GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCc-ccccCCcEEEEEEeeceeCCCeEEEEEcCCcccC
Confidence 999999999998765 345666788887 455554332221 233799999999998863 3 4899999998875
Q ss_pred CC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 178 PT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 178 ~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.. .........|.|.++..+|+|.|+|.+.|..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3mj8_L 159 QGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT 202 (213)
T ss_dssp TTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred CCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence 42 122233466999999999999999999997654
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-24 Score=165.68 Aligned_cols=170 Identities=24% Similarity=0.306 Sum_probs=130.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+|.+...+....+.+|++++|.|.+.+.+.+ .+.|++++..+.. .+.+|.|.
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--------------------------~~~~L~i~ 56 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE--------------------------TNSSLNIV 56 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC--------------------------CSSEEEEC
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC--------------------------CceEEEEe
Confidence 46788888888889999999999999877664 6999998754310 12389999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~ 180 (386)
+++.+|+|.|+|.+.+. ..+..+.|.|..++...... ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus 57 ~v~~~d~G~Y~C~~~~~---~~s~~~~l~V~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~- 130 (176)
T 1f2q_A 57 NAKFEDSGEYKCQHQQV---NESEPVYLEVFSDWLLLQAS--AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW- 130 (176)
T ss_dssp SCCGGGCEEEEEECTTS---SCCCCEEEEEECSSEEEEES--CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-
T ss_pred ccceecCEEEEEEcCCc---cccccEEEEEeCcceeecCC--cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-
Confidence 99999999999998643 23556777777555444332 2467899999999999 45666799999999877432
Q ss_pred ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~ 227 (386)
..+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.
T Consensus 131 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 131 ---YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp ---CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred ---cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 23567999999999999999999997555466778899888774
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.4e-23 Score=162.92 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=123.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...|. ..+.+|++|+|.|.+.+.+. .+.|+|++..+... ...... ......|.|.+
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~-------------~~~~~~----~~~~~~L~i~~ 64 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWI-------------TRIPQE----LVKKGQFPIPS 64 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHH-------------HTSCHH----HHTTTEEEESS
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccc-------------cccccc----CCcccEEEECC
Confidence 4688888776 47899999999999987665 69999988654210 000000 01123899999
Q ss_pred cCCCCCeEEEEEeEEcc-c-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC
Q psy8823 103 IQETDAGYYRCQVIIGI-N-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL 177 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~-~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~ 177 (386)
++.+|+|.|+|.+.+.. + ...+..+.|.|.. +|.+.... ...+.+|+.++|.|.+.+. .+.+.|+|++..+.
T Consensus 65 v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~ 141 (198)
T 1ugn_A 65 ITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP--SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEH 141 (198)
T ss_dssp CCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEES--CSEEETTCCEEEEEECSSC-CSEEEEEEC-----
T ss_pred CCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCC--ccccCCCCcEEEEEecCCC-CcEEEEEECCCccC
Confidence 99999999999998865 3 2345667788876 34443322 2468899999999999887 78999999998764
Q ss_pred CCCce---EE---eeeEEEECCCCCCCCeEEEEEEecCCCCc----eeeeEEEEEE
Q psy8823 178 PTGGS---IY---RGSILKIPQITKEDRGTYYCVAENGVGKG----TRRNIAVEVE 223 (386)
Q Consensus 178 ~~~~~---~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~----~~~~~~l~v~ 223 (386)
..... .. ....|.|.+++.+|+|.|+|.+.|..... .+..+.|.|.
T Consensus 142 ~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 142 PQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp -CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred CccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 33221 11 24789999999999999999999976532 2456666653
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=164.58 Aligned_cols=170 Identities=21% Similarity=0.327 Sum_probs=126.3
Q ss_pred ecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 37 DIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 37 ~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
-.|+.+.|.|.+.+. +.+.+.|++++..+.. +.++..... ....+|.|.+++.+|+|.|+|.+
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~--------------~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~~ 78 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--------------SDRVKTGVT--GEQIWLQINEPTPNDKGKYVMEL 78 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECCC--------------CSSEEEEEE--TTEEEEEEESCCGGGCEEEEEEE
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEccC--------------CCeEEEEEe--CCEEEEEECCCCcccCEEEEEEE
Confidence 367888888888764 5788999998865421 122322221 23457999999999999999999
Q ss_pred EEcccceeeeEEEEEEec--------------------CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 116 IIGINNKISAEVDLQVRR--------------------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 116 ~~~~~~~~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
.+..+ .....+.|.|.. .|.+....+....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus 79 ~n~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~ 157 (212)
T 2r15_A 79 FDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 157 (212)
T ss_dssp ECSSC-EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEE
T ss_pred ecCCc-ceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeE
Confidence 97543 334555555432 343444445667889999999999999999999999999998
Q ss_pred eCCCCceEEee-----eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 176 ILPTGGSIYRG-----SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 176 ~~~~~~~~~~~-----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
+.......... ..|.|.+++.+|.|.|+|.+.|..+. ....+.|.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~ 210 (212)
T 2r15_A 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFI 210 (212)
T ss_dssp ECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred CccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCc-EEEEEEEEEEc
Confidence 87665544332 38999999999999999999999887 56677777753
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-23 Score=169.15 Aligned_cols=221 Identities=17% Similarity=0.146 Sum_probs=128.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|. ..+.+|++|+|.|.+. .+...+.|+|++..+.... ... .......+..|.|.
T Consensus 5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~-~~~~~~~W~k~g~~~~~~~-----------~~~----~~~~~~~~~~L~I~ 67 (257)
T 1b6u_A 5 HRKPSLLAHPG-PLVKSEETVILQCWSD-VRFQHFLLHREGKFKDTLH-----------LIG----EHHDGVSKANFSIG 67 (257)
T ss_dssp CCCCEECCBSC-SEEESSCCEEEEEEES-SCCSEEEEEEESTTCEEEE-----------EEC----BCCTTCEEEEEEEC
T ss_pred CCCCEEEEcCC-CEecCCCCEEEEEecC-CCCcEEEEEECCCCCCcce-----------eee----eccCCCceEEEEee
Confidence 35678877765 6688999999999987 4567799999886541100 000 01122345689999
Q ss_pred ccCCCCCeEEEEEeEEccc----ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe
Q psy8823 102 DIQETDAGYYRCQVIIGIN----NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN 174 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~ 174 (386)
+++.+|+|.|+|.+.+... ...+..+.|.|.. +|.+...+. ..+.+|++++|.|.+.+. ++.+.|+|+|.
T Consensus 68 ~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~--~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~ 144 (257)
T 1b6u_A 68 PMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG--PTVLAGESVTLSCSSRSS-YDMYHLSREGE 144 (257)
T ss_dssp SCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC--TTCBTTCEEEEEEECSSC-CSEEEEEETTS
T ss_pred cCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC--CccCCCCEEEEEEeCCCC-CcEEEEEECCc
Confidence 9999999999999975321 2346667788864 344443322 247899999999999765 46899999997
Q ss_pred eeCCCCceE-----EeeeEEEECCCCCCCCeEEEEEEecCCC----CceeeeEEEEEEecceEeeCCC-cccccCCCcEE
Q psy8823 175 AILPTGGSI-----YRGSILKIPQITKEDRGTYYCVAENGVG----KGTRRNIAVEVEFAPVITVPKP-RLGQALQYDMD 244 (386)
Q Consensus 175 ~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~----~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~ 244 (386)
.+....... .....|.|.+++ |+|.|+|.+.+... ...+..+.|.|..+|.+..+.+ ......|..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~ 222 (257)
T 1b6u_A 145 AHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRH 222 (257)
T ss_dssp SCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------------------
T ss_pred ccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEE
Confidence 654322111 125679999998 99999999987532 2346778899998887653333 23455688899
Q ss_pred EEEEEEecCCCeeEEEeCCee
Q psy8823 245 LECHVEAYPPPAIVWIKEDTQ 265 (386)
Q Consensus 245 l~C~~~g~p~~~~~W~~~~~~ 265 (386)
|.|.+ |.+.+.+.|...+-.
T Consensus 223 l~~~~-~~~~~~~~~~~~~~~ 242 (257)
T 1b6u_A 223 LHAAA-EQKLISEEDLNLDLV 242 (257)
T ss_dssp ---------------------
T ss_pred EEEEE-cchHHHHHHhhhhhc
Confidence 99887 777788999765543
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-23 Score=162.72 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=122.6
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCC-CceeeeEEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVG-KGTRRNIAVE 221 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~~~l~ 221 (386)
.+.+|++++|.|.+.+ +.+.+.|+|++..+....... .....|.|.+++.+|+|.|+|.+.|..+ ...+..+.|.
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~ 93 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV 93 (196)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEE
T ss_pred cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEE
Confidence 6889999999999988 678999999998764321111 2356899999999999999999999876 2345677777
Q ss_pred EEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
|.. +|.+...+. ..+.+|+.++|.|.+.+. ++.+.|++++.. +......... ........|.|.+++.+
T Consensus 94 V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~--~~~~~~~~~~----~~~~~~~~L~i~~v~~~ 165 (196)
T 3p2t_A 94 MTGAYSKPTLSALPS-PLVTSGKSVTLLCQSRSP-MDTFLLCKERAA--HPLLCLRSEH----GAQQHQAEFPMSPVTSV 165 (196)
T ss_dssp EECSSCCCEEEEESC-SEECTTCCEEEEEEEEEE-EEEEEEEETTCC--CGGGSEEEEE----EEEEEEEEEEECSCCGG
T ss_pred ecCCCCCCEEEeCCc-ceecCCCeEEEEEecCCC-CCEEEEEeCCCc--ccceeecccc----cccCcceEEEeCCCccc
Confidence 764 345554433 367889999999999874 458999999876 3222111100 01124678999999999
Q ss_pred CCeEEEEEEEcCCC-----ceeeEEEEEE
Q psy8823 299 QYGSYICRAANKLG-----TSEKTVELFE 322 (386)
Q Consensus 299 d~G~Y~C~a~n~~g-----~~~~~~~l~v 322 (386)
|+|.|+|.|.|..+ ..+..+.|.|
T Consensus 166 d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 166 HGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp GCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred CCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 99999999999986 2334556655
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-23 Score=160.68 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=123.6
Q ss_pred eEEEeCCccEEEEEEeeeeCCCe-EEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPR-ISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
...+.+|+.++|.|.+.+.|.+. +.|++++..+.. ....|.|.+++.+|+|.|+|.+.|... +..+.+.|
T Consensus 16 ~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V 86 (175)
T 1fnl_A 16 WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEV 86 (175)
T ss_dssp CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEEE
T ss_pred ceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------CceEEEEeCCCcccCEEEEEEeeCCcc---cccEEEEE
Confidence 34688999999999998888765 899999987653 345799999999999999999998544 45677788
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
..++..... ....+.+|+.+.|.|.+.+.+++ .+.|++++.. +... .....|.|.++..+|+|
T Consensus 87 ~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~--~~~~-------------~~~~~L~i~~v~~~d~G 150 (175)
T 1fnl_A 87 HIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKD--RKYF-------------HHNSDFHIPKATLKDSG 150 (175)
T ss_dssp ECSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEE--EEEE-------------EECCCEEESSCCGGGCE
T ss_pred eCCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeE--ccCC-------------CCCCEEEEcccChhhCe
Confidence 766654443 44667789999999999988766 9999999987 3110 13577999999999999
Q ss_pred EEEEEEEcCCCc-eeeEEEEEEEe
Q psy8823 302 SYICRAANKLGT-SEKTVELFESI 324 (386)
Q Consensus 302 ~Y~C~a~n~~g~-~~~~~~l~v~~ 324 (386)
.|+|.|.|..|. .+..+.|.|.+
T Consensus 151 ~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 151 SYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp EEEEEEEETTEEEECCCEEEEEEC
T ss_pred EEEEEEEcCCCCccCccEEEEEeC
Confidence 999999997664 45577777753
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-23 Score=166.50 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=121.8
Q ss_pred ccceeeecC--CcEEEEEEEeeCCCCcEEEEec--CCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 31 SQEQIKDIG--GTVELKCSVQYAQDYPVIWMKV--DRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 31 ~~~~~v~~G--~~v~L~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+....+.+| ++++|.|.+.+ |.+.+.|+++ +.... . .+.++.... ...|.|.+++.+
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~------~-------~~~~~~~~~-----~~~l~I~~v~~~ 74 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFV------P-------DGNRISWDS-----KKGFTIPSYMIS 74 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEEC------C-------CSSSCEEET-----TTEEEEEGGGTT
T ss_pred ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccc------c-------CCCcccccC-----CccEEEccCChh
Confidence 456678899 99999999975 6688999985 22210 0 011111111 126999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEec--CCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCeeeCCCCc-
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRR--PPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRRENNAILPTGG- 181 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~- 181 (386)
|+|.|+|.+.+......+..+.|.|.. +|.+.......+.+.+|++++|.|.+.+.| .+.+.|++++..+.....
T Consensus 75 D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~ 154 (213)
T 2x1w_L 75 YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 154 (213)
T ss_dssp TCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEE
T ss_pred cCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEe
Confidence 999999999875444444456777754 233333344455789999999999998855 357999998876432111
Q ss_pred --e---------EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceE
Q psy8823 182 --S---------IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 182 --~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~ 228 (386)
. ......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 155 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEDPIE 211 (213)
T ss_dssp EEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEC----
T ss_pred ccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCc-EEEEEEEEEeccccc
Confidence 0 223457999999999999999999999887 578889999887754
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=163.39 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=126.0
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+|.+... +....+.+|++++|.|.+.+.+.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 4 ~P~i~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~~- 75 (176)
T 1f2q_A 4 KPKVSLN-PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNE- 75 (176)
T ss_dssp CCCCEEE-SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSC-
T ss_pred CCEEEcC-CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------CceEEEEeccceecCEEEEEEcCCccc-
Confidence 3444433 333568899999999999887765 6999999987653 256799999999999999999988554
Q ss_pred ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 213 GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 213 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
+..+.+.|..++..... ....+.+|+.+.|.|.+. +.|.+.+.|++++.. +... .....|.
T Consensus 76 --s~~~~l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~--~~~~-------------~~~~~L~ 137 (176)
T 1f2q_A 76 --SEPVYLEVFSDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEA--LKYW-------------YENHNIS 137 (176)
T ss_dssp --CCCEEEEEECSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEE--CCSC-------------CCSSEEE
T ss_pred --cccEEEEEeCcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEE--Eeee-------------cCCCeEE
Confidence 34567777755544433 345677999999999995 556669999999987 3111 1356899
Q ss_pred EeecccCCCeEEEEEEEcCCC-ceeeEEEEEEEecCC
Q psy8823 292 VITIEKRQYGSYICRAANKLG-TSEKTVELFESIIPV 327 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~p~ 327 (386)
|.++..+|+|.|+|.|.|..+ ..+..+.|.|...|.
T Consensus 138 i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 138 ITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred ECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 999999999999999999754 445668888887664
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=164.57 Aligned_cols=159 Identities=14% Similarity=0.121 Sum_probs=107.8
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVE 221 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~ 221 (386)
.+.+|++++|.|.+.+.+. .+.|+|++..+..... .......|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~ 93 (196)
T 2d3v_A 15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV 93 (196)
T ss_dssp EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEE
T ss_pred cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEE
Confidence 6889999999999987665 9999999986643211 11235689999999999999999999876532 34567788
Q ss_pred EEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
|.. +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|++++.. +....... ...........|.|.+++.+
T Consensus 94 V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~--~~~~~~~~---~~~~~~~~~~~L~I~~v~~~ 166 (196)
T 2d3v_A 94 VTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDH--KLSWTLDS---QLTPSGQFQALFPVGPVTPS 166 (196)
T ss_dssp EECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC-----CCEEEEEC---EECTTSCEEEEEECCCCBTT
T ss_pred ecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCc--cccccccc---ccccCCCceeEEEeeecCcc
Confidence 876 45555443 35678999999999999988 89999999876 22111000 00111123578999999999
Q ss_pred CCeEEEEEEEcCCC
Q psy8823 299 QYGSYICRAANKLG 312 (386)
Q Consensus 299 d~G~Y~C~a~n~~g 312 (386)
|+|.|+|.|.|..+
T Consensus 167 D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 167 HRWMLRCYGSRRHI 180 (196)
T ss_dssp BCEEEEEEEEETTE
T ss_pred cCeeEEEEEEccCC
Confidence 99999999999865
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=163.93 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=120.7
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.+...+.. .+.+|++|+|.|.+.+ +.+.+.|+|++... . ..+..|.|
T Consensus 5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~---------------------~-----~~~~~L~i 56 (184)
T 2gi7_A 5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR---------------------Y-----QDQAVLFI 56 (184)
T ss_dssp CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC---------------------E-----ESSSEEEE
T ss_pred CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc---------------------c-----CcccEEEE
Confidence 3457888888775 7899999999999876 67789999987530 0 11238999
Q ss_pred cccCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeee
Q psy8823 101 KDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI 176 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~ 176 (386)
.+++.+|+|.|+|.+.+..+ ...+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+.+ +.+.|+|++..+
T Consensus 57 ~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p--~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~ 133 (184)
T 2gi7_A 57 PAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP--GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPA 133 (184)
T ss_dssp SSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC--CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCT
T ss_pred CcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC--CceecCCCcEEEEEEcCCCC-cEEEEEECCCcC
Confidence 99999999999999988654 2345567777743 34443322 22467899999999987654 689999999876
Q ss_pred CCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 177 LPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 177 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
............|.|.+++.+|+|.|+|.+.|...
T Consensus 134 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 134 PYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp TSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred cceecCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 55333334567899999999999999999999754
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-23 Score=163.72 Aligned_cols=176 Identities=28% Similarity=0.377 Sum_probs=127.8
Q ss_pred eccceeeecCCcEEEEEE-EeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 30 ISQEQIKDIGGTVELKCS-VQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~-~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
.+....+.+|+.+.|.|. +.+.+. +.+.|++++..+.. . .+.+..... .+.+|.|.+++.+|
T Consensus 14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~-----~-------~~~~~~~~~----~~~~L~i~~v~~~d 77 (201)
T 3s97_C 14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFI-----T-------MDKRRFVSQ----TNGNLYIANVEASD 77 (201)
T ss_dssp CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBC-----C-------CSSSEEECT----TTCCEEESSCCGGG
T ss_pred CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeee-----e-------eCCCeEEEc----CCCeEEECcCCccc
Confidence 346677999999999999 777777 89999998865421 0 011111111 12379999999999
Q ss_pred CeEEEEEeEEcccceee--eEEEEEEe-------cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 108 AGYYRCQVIIGINNKIS--AEVDLQVR-------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
+|.|+|.+.+..+.... ..+.+.+. .+|.+.... ....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 78 ~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~ 156 (201)
T 3s97_C 78 KGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF-KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPS 156 (201)
T ss_dssp CEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEEC-CCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCT
T ss_pred CeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecC-CceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCC
Confidence 99999999986543322 33344432 123333322 256788999999999999999999999999987665
Q ss_pred CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 179 TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 179 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
.......+..|.|.++..+|+|.|+|.+.|..+. ....+.|.|+
T Consensus 157 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 200 (201)
T 3s97_C 157 TAEISTSGAVLKIFNIQLEDEGIYECEAENIRGK-DKHQARIYVQ 200 (201)
T ss_dssp TCEEETTTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred ceeecCCCCEEEEccCChhhCEEEEEEEEecCCc-eeeeEEEEEe
Confidence 4333345678999999999999999999998887 4566777664
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-24 Score=179.51 Aligned_cols=223 Identities=15% Similarity=0.214 Sum_probs=144.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---EeeeEEEECCCCCCCCeEEEEEEecCCCCcee--e
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---YRGSILKIPQITKEDRGTYYCVAENGVGKGTR--R 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~ 216 (386)
...+.+.+|++++|.|.+.+. ++|++++..+....... .....|.|.+++.+|+|.|+|.+.|..+.... .
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 82 (289)
T 3mjg_X 7 GPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERK 82 (289)
T ss_dssp CSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCE
T ss_pred CCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEE
Confidence 345678899999999998764 99999998763111100 12468999999999999999999997765322 3
Q ss_pred eEEEEEEecceEeeCCC-c---ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEE
Q psy8823 217 NIAVEVEFAPVITVPKP-R---LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292 (386)
Q Consensus 217 ~~~l~v~~~p~~~~~~~-~---~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 292 (386)
.+.+.|..+........ . ..+.+|+.+.|.|.+. .|.+.+.|++++....+. ..+. . ....+
T Consensus 83 ~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~--~~~~------~---~~~~~-- 148 (289)
T 3mjg_X 83 RLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP--VPYD------H---QRGFS-- 148 (289)
T ss_dssp EEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC--CCEE------T---TTEEE--
T ss_pred eEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc--eeec------C---CcCee--
Confidence 34444432222221111 1 4578899999999997 778889998875331121 1100 0 01111
Q ss_pred eecccCCCeEEEEEEEcCCCceee-EEEEEEEec--CCCCCCCCCceeecCcceeeeEEecCCC---CCcccccceeeec
Q psy8823 293 ITIEKRQYGSYICRAANKLGTSEK-TVELFESII--PVCPPQTQPSELLPLRNVNMAVIFAEQP---TSWEPQRKQLNCS 366 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~--p~~~~~~~~~~~~~~~~~~~~c~~~~~p---~~W~~~~~~l~~~ 366 (386)
...|+|.|+|.|.|..+.... .+.|.|... |.....+....+..|+.++|.|.+.+.| ++|+++++.....
T Consensus 149 ---~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~ 225 (289)
T 3mjg_X 149 ---GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRL 225 (289)
T ss_dssp ---ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCC
T ss_pred ---eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCc
Confidence 357999999999988776543 455666542 2211122446688999999999998888 6999776643221
Q ss_pred -------------ccceeeeeeeeecccccCC
Q psy8823 367 -------------SLLYQCVLPLVDRQDRLMH 385 (386)
Q Consensus 367 -------------~~~~~~~i~~v~~~d~~~~ 385 (386)
.....|.|..|+.+|++.|
T Consensus 226 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 257 (289)
T 3mjg_X 226 VEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257 (289)
T ss_dssp CCCEEEESCTTTTEEEEEEEESSCCSSCCEEE
T ss_pred ccccccccCCcceEEEEEEEEcccChhhCcEE
Confidence 1123799999999999865
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=167.57 Aligned_cols=191 Identities=19% Similarity=0.281 Sum_probs=129.9
Q ss_pred ccceeeecCCcEEEEEEEeeCCCC---cEEEEecCCcccccccccc-CCceeEEe---ccceeeec-CCCcceEEEEEcc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLPIS-TGSSLIIR---DSRFAIRY-DTASSTYTLLVKD 102 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~-~~~~~~~~L~i~~ 102 (386)
|+...+.+|++++|.|.+.+.+.+ .|.|+|++........... ........ ..++.... .....+++|.|.+
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 85 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence 445668899999999999877654 3899998876543322211 11111111 12222211 2234566899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS 182 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 182 (386)
++.+|+|.|+|.+.+...........+.+..++...........+..|+.+.+.|.+.+.|++.++|++++..+......
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~ 165 (218)
T 4frw_A 86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF 165 (218)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE
Confidence 99999999999998766555555555666555443333344456677899999999999999999999998776433221
Q ss_pred -----EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 183 -----IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 183 -----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....+.|.|.++..+|+|.|+|.|.|..+.. ...+.+.|
T Consensus 166 ~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~t~~v 209 (218)
T 4frw_A 166 KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRITHIL 209 (218)
T ss_dssp ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEEEEEC
T ss_pred ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEEEEEE
Confidence 1234579999999999999999999988763 33344433
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=174.90 Aligned_cols=211 Identities=20% Similarity=0.296 Sum_probs=128.5
Q ss_pred CeeeeeccceeeecCCcEEEEEEEe---eCCCCcEEEEecCCccccccccccCCceeEEe----ccceeeecCCCcceEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQ---YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR----DSRFAIRYDTASSTYT 97 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~---~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 97 (386)
+.+.+.+....+.+|++++|.|.+. +.+.+.+.|++++................... ..++.+..+....+++
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 4566777778899999999999987 55667799999765443221111111111111 1344443344456679
Q ss_pred EEEcccCCCCCeEEEEEeEEcccc-eeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe---eeeCCCeEEEEEcC
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINN-KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA---GGHPTPRISWRREN 173 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~---~~~~~~~v~W~~~~ 173 (386)
|.|.+++.+|+|.|+|.+.+.... .....+.|.|.. ..+....+.+|+.++|.|.+ .+.|.+.+.|++++
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~ 159 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS 159 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec------cCCCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence 999999999999999999976433 345556666641 12346678999999999999 56688999999953
Q ss_pred eeeCCCC----------------------ce------EEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE-Ee
Q psy8823 174 NAILPTG----------------------GS------IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV-EF 224 (386)
Q Consensus 174 ~~~~~~~----------------------~~------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v-~~ 224 (386)
....... .. ......|.|.+++.+|+|.|+|.+.|..+. ....+.|.| ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~ 238 (268)
T 3mj6_A 160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHVVQD 238 (268)
T ss_dssp TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCce-EEEEEEEEEEcC
Confidence 3211000 00 123568999999999999999999997775 667778887 34
Q ss_pred cceEeeCCCcccccCCCc
Q psy8823 225 APVITVPKPRLGQALQYD 242 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~ 242 (386)
+|.+...+....+..|+.
T Consensus 239 ~p~~~~~p~~~~~~~~q~ 256 (268)
T 3mj6_A 239 EFQRTISPTPPTDKGQQG 256 (268)
T ss_dssp ------------------
T ss_pred CCeeeeCCCCCCCCccee
Confidence 555555555555544443
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=166.79 Aligned_cols=183 Identities=21% Similarity=0.310 Sum_probs=128.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE--EEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY--TLL 99 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~ 99 (386)
..+|.|...|. ..+.+|++|+|.|.+.+ +.+.+.|+|++..+... ..... ...... +|.
T Consensus 7 ~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~-------------~~~~~----~~~~~~~~~L~ 67 (218)
T 1uct_A 7 FPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYRE-------------IGRRL----KFWNETDPEFV 67 (218)
T ss_dssp SCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEE-------------CSEEC----C----CCCEEE
T ss_pred CCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccc-------------ccccC----CCCcceeeEEE
Confidence 45788888776 57899999999999875 56789999987654110 00000 011223 799
Q ss_pred EcccCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee
Q psy8823 100 VKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA 175 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 175 (386)
|.+++.+|+|.|+|.+.+..+ ...+..+.|.|.. +|.+...+ ...+.+|+.++|.|...+.+.+.+.|+|+|..
T Consensus 68 I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p--~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~ 145 (218)
T 1uct_A 68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR--GLVLMPGENISLTCSSAHIPFDRFSLAKEGEL 145 (218)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS--CSEECTTCCCEEEEECSSSCCSEEEEEETTCS
T ss_pred EcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC--CCccCCCCCEEEEEeCCCCCCCEEEEEECCCc
Confidence 999999999999999998643 3345667777764 44444332 23678999999999766677789999999987
Q ss_pred eCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC----CceeeeEEEEEEec
Q psy8823 176 ILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG----KGTRRNIAVEVEFA 225 (386)
Q Consensus 176 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~----~~~~~~~~l~v~~~ 225 (386)
+............|.|.+++.+|+|.|+|.+.|... ...+..+.|.|...
T Consensus 146 ~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 146 SLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp SCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred ccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 654211122356899999999999999999998532 22456677777543
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=164.01 Aligned_cols=171 Identities=19% Similarity=0.305 Sum_probs=126.8
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC-------------------Cc-eEEeeeEEEECCCCCCCCeEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT-------------------GG-SIYRGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-------------------~~-~~~~~~~l~i~~~~~~d~g~y~C 204 (386)
..+.+|++++|.|...+.+.+.+.|++++...... .. ....+..|.|.+++.+|+|.|+|
T Consensus 9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C 88 (208)
T 3r4d_A 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL 88 (208)
T ss_dssp SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence 35789999999999888888899999875422110 00 01123579999999999999999
Q ss_pred EEecCCCCceeeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee
Q psy8823 205 VAENGVGKGTRRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281 (386)
Q Consensus 205 ~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 281 (386)
.+.+..+......+.|.|..+ |.+...... +..|+.+.|.|.+.+.| |.+.|++++.. +....++....
T Consensus 89 ~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~--l~~~~~~~~~~--- 160 (208)
T 3r4d_A 89 DMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQS--LQLTERMTLSQ--- 160 (208)
T ss_dssp EEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEE--CCCCSSEEEET---
T ss_pred EEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEe--CCCCCCeEEcC---
Confidence 999986554667778888765 444444333 88899999999998866 79999999988 54444443321
Q ss_pred cCceeeeEEEEeecccCCCeEEEEEEEcCCCceee-EEEEEEEecCC
Q psy8823 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK-TVELFESIIPV 327 (386)
Q Consensus 282 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~ 327 (386)
.+..|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|.
T Consensus 161 ----~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 161 ----NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp ----TTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred ----CCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 2367999999999999999999999998764 67777765554
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=162.06 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=125.3
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC--------------CCceEE-------eeeEEEECCCCCCCCeE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP--------------TGGSIY-------RGSILKIPQITKEDRGT 201 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~-------~~~~l~i~~~~~~d~g~ 201 (386)
..+.+.+|++++|.|.+.+.|.+.+.|++++..... ...... ....|.|.+++.+|+|.
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 345788999999999999888899999998863211 011111 13459999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 281 (386)
|+|.+.+..+ .+.+.|... .. +....+.+|+.++|.|.+.+.|.+.+.|++++.. +.
T Consensus 83 Y~C~~~~~~~-----~~~l~V~~~---~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~--~~------------ 139 (184)
T 2ny1_B 83 YICEVEDQKE-----EVQLLVFGL---TA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGK--NI------------ 139 (184)
T ss_dssp EEEEETTEEE-----EEEEEEEEE---EE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSC--EE------------
T ss_pred EEEEEEcCCC-----cEEEEEEEe---cC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCc--cc------------
Confidence 9999987532 455666542 22 3345678999999999999999999999999866 20
Q ss_pred cCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 282 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
.....|.|.++..+|+|.|+|.|.|..+..+.++.|.|...|.
T Consensus 140 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 140 ---QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp ---EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred ---cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence 1467899999999999999999999999999999999988775
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=172.02 Aligned_cols=188 Identities=15% Similarity=0.241 Sum_probs=122.3
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
...+.+...|....+.+|++|+|.|.+.+.+ .+.+.|+|++.......+............+|+.... ..+++
T Consensus 32 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~ 109 (252)
T 3bkj_L 32 SSDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDF 109 (252)
T ss_dssp --CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEE
T ss_pred ccccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEE
Confidence 3455677767888899999999999998776 5789999976332111111111100000123444432 34567
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEE
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRR 171 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~ 171 (386)
+|.|.+++.+|+|.|+|.+.+...........|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |++ .++|++
T Consensus 110 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k 188 (252)
T 3bkj_L 110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKI 188 (252)
T ss_dssp EEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCCh-hhcCCCcEEEEEEEeeEeCCCcEEEEEE
Confidence 9999999999999999999865433333345677754 34443322211 12368899999999885 443 799999
Q ss_pred cCeeeCCC-C----------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 172 ENNAILPT-G----------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~~-~----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++..+... . ........|.|.++..+|+|.|+|.+.|....
T Consensus 189 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 189 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 99876543 0 11122356999999999999999999997654
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-24 Score=176.82 Aligned_cols=187 Identities=15% Similarity=0.238 Sum_probs=102.1
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
...+.+...|....+.+|++|+|.|.+.+.+.+.+.|+|++.......+.............++.... ..++++|.|.
T Consensus 21 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 98 (233)
T 3bqu_C 21 GAETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIE 98 (233)
T ss_dssp --CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC--
T ss_pred ccceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEEC
Confidence 34556666678888999999999999988777789999975432111111111000000122333221 3345689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEEEEcCeee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAI 176 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~ 176 (386)
+++.+|+|.|+|.+.+..+........|.|.. +|.+....+.. ...+|+.++|.|.+.+.+++ .++|+++|..+
T Consensus 99 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 177 (233)
T 3bqu_C 99 NMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 177 (233)
T ss_dssp ---CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCEEEEEEEC----
T ss_pred CCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCH-HhhcCCceEEEEEEccccCCceEEEEEECCeeC
Confidence 99999999999999865433333334566654 44443322211 12368999999999886443 79999998876
Q ss_pred CCC-----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 177 LPT-----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 177 ~~~-----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
... +........|.|.+...+|+|.|+|.+.|...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 443 11112345789999999999999999998654
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=169.21 Aligned_cols=190 Identities=21% Similarity=0.266 Sum_probs=128.5
Q ss_pred eeeeccceeeecCCcEEEEEEEee---CCCCcEEEEecCCcccccccccc-----------CC-ceeE----Eeccceee
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQY---AQDYPVIWMKVDRNKVTEPLPIS-----------TG-SSLI----IRDSRFAI 87 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~---~~~~~v~W~~~~~~~~~~~~~~~-----------~~-~~~~----~~~~~~~~ 87 (386)
+...+....+.+|++++|.|.+.+ .+.+.+.|++++.......+... .+ .... ...+|..+
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 334445677999999999999987 67778999998744210000000 00 0000 01122222
Q ss_pred ecCCCcceEEEEEcccCCCCCeEEEEEeEEcccce----eeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEee
Q psy8823 88 RYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNK----ISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAG 160 (386)
Q Consensus 88 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~ 160 (386)
.. .++.+|.|.+++.+|+|.|+|.+.+..+.. .+..+.|.|..+ |.+....+....+.+|+.+.|.|.+.
T Consensus 85 ~~---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~ 161 (250)
T 2fbo_J 85 AN---LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT 161 (250)
T ss_dssp SC---TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEE
T ss_pred cc---CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEec
Confidence 21 134589999999999999999999754422 255788888764 34444445566777899999999999
Q ss_pred eeCCCeEEEEEcCeeeCCCC-----------------------c-eEE-eeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 161 GHPTPRISWRRENNAILPTG-----------------------G-SIY-RGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 161 ~~~~~~v~W~~~~~~~~~~~-----------------------~-~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+.|.+.++|++++..+.... . ... ....|.|.+++.+|+|.|+|.|.|..+....
T Consensus 162 g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~ 241 (250)
T 2fbo_J 162 DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDA 241 (250)
T ss_dssp SCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGE
T ss_pred CCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCc
Confidence 99999999999987664321 1 111 2368999999999999999999997765433
Q ss_pred eeEE
Q psy8823 216 RNIA 219 (386)
Q Consensus 216 ~~~~ 219 (386)
....
T Consensus 242 ~~~~ 245 (250)
T 2fbo_J 242 DRSS 245 (250)
T ss_dssp EEEE
T ss_pred ccee
Confidence 3333
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-23 Score=161.31 Aligned_cols=147 Identities=16% Similarity=0.250 Sum_probs=113.9
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEEEe
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEVEF 224 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v~~ 224 (386)
.+.+|++++|.|.+.+ +.+.+.|+|++.. .......|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..
T Consensus 18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 90 (184)
T 2gi7_A 18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATG 90 (184)
T ss_dssp EEETTCCEEEEEECST-TCSEEEEEETTTC------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEES
T ss_pred cccCCCcEEEEEeCCC-CCCEEEEEECCcc------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecC
Confidence 6889999999999987 7789999999875 2234568999999999999999999997653 234567777743
Q ss_pred ---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 225 ---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+|.+...+ ...+.+|+.++|.|.+.+. ++.+.|++++.. +..... .......|.|.+++.+|+|
T Consensus 91 ~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~--~~~~~~---------~~~~~~~L~i~~v~~~D~G 157 (184)
T 2gi7_A 91 VFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDP--APYKNP---------ERWYRASFPIITVTAAHSG 157 (184)
T ss_dssp SSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCC--TTSCCC---------CEEEEESSSEEEETTCCSE
T ss_pred cCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCc--Ccceec---------CCCceEEEEEccCCccCCe
Confidence 45555444 4567799999999998655 469999999876 322111 1124677999999999999
Q ss_pred EEEEEEEcCCC
Q psy8823 302 SYICRAANKLG 312 (386)
Q Consensus 302 ~Y~C~a~n~~g 312 (386)
.|+|.|.|..+
T Consensus 158 ~Y~C~a~n~~~ 168 (184)
T 2gi7_A 158 TYRCYSFSSRD 168 (184)
T ss_dssp EEEEEEECTTS
T ss_pred EEEEEEEeCCC
Confidence 99999999864
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=168.33 Aligned_cols=191 Identities=19% Similarity=0.244 Sum_probs=137.7
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+..+...+....+.+|+++.|.|.+.+.+.+.+.|++++..+.... ...+........++.... .+|.|.++
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~------~~L~i~~~ 75 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLV--CYNNKITASYEDRVTFLP------TGITFKSV 75 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEES--EETTEECTTTTTTCEEET------TEEECSCC
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEE--EecCccCccccCceEeec------cEEEEeeC
Confidence 4567777778889999999999999988888999999876531100 000000000112222221 48999999
Q ss_pred CCCCCeEEEEEeEEccc-ceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCc
Q psy8823 104 QETDAGYYRCQVIIGIN-NKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
+.+|+|.|+|.+.+..+ ...+..+.|.|..+|....... ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus 76 ~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~ 154 (209)
T 1nbq_A 76 TREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI-PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK 154 (209)
T ss_dssp CTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCC-BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSS
T ss_pred CHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCccc-ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccc
Confidence 99999999999998653 3446677888888886655433 3458899999999997 8999999999999987754332
Q ss_pred e-----------EEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEE
Q psy8823 182 S-----------IYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVE 223 (386)
Q Consensus 182 ~-----------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~ 223 (386)
. ......|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp SSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred cceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 1 1135689999999999999999999998874 3455555553
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=166.22 Aligned_cols=174 Identities=17% Similarity=0.235 Sum_probs=115.2
Q ss_pred ceEEEeCCccEEEEEEeeeeCCC---eEEEEEcCeeeC-----------CC------CceE-------EeeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTP---RISWRRENNAIL-----------PT------GGSI-------YRGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~-----------~~------~~~~-------~~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+.+ .+.|+|++.... .. .+.. .....|.|.+++
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 91 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT 91 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence 45678899999999999765543 699999764211 00 0000 124579999999
Q ss_pred CCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCcee
Q psy8823 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
.+|+|.|+|.+.|..+. .. ..+.+...+..........+..|+.+.|.|.+.| .|.|.++|++++.. .......
T Consensus 92 ~~D~G~Y~C~a~n~~~~-~~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~--~~~~~~~ 166 (226)
T 4f80_A 92 ASDSGKYLCYFQDGDFY-EK--ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE--NIPTVEA 166 (226)
T ss_dssp GGGCEEEEEEEEETTEE-EE--EEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC--BCCCEEC
T ss_pred hHHCeeEEEEEECCCcE-EE--EEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce--EcCCCce
Confidence 99999999999997665 23 3444444444333344456678999999999988 59999999997654 2111111
Q ss_pred EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.... ........+.+.+++.+|+|.|+|.|.|..|..++++.|.|.+
T Consensus 167 ~~~~---~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 167 PVVA---DGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp CCEE---CTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred EEEE---CCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence 1111 1111123455667788999999999999999999999988754
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.7e-23 Score=177.79 Aligned_cols=179 Identities=17% Similarity=0.246 Sum_probs=139.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++...... ..+ .....+.+|.|.+
T Consensus 157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~-------------~~~-----~~~~~~~~L~i~~ 218 (347)
T 2ifg_A 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-------------VMK-----SGGLPSLGLTLAN 218 (347)
T ss_dssp CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE-------------ECC-----CCCSSEEEEEEES
T ss_pred CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecc-------------ccc-----ceecccceEEEee
Confidence 4788888888888999999999999998899999999988653110 000 1223456899999
Q ss_pred cCCCCCe-EEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc
Q psy8823 103 IQETDAG-YYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 103 ~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
++.+|+| .|+|.+.+..+. .+..+.|.|..+|.+.. ....+|+.++|.|.+.|.|.+.++|++++..+.....
T Consensus 219 v~~~D~G~~Y~C~a~n~~g~-~~~~~~l~V~~~P~i~~-----~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~ 292 (347)
T 2ifg_A 219 VTSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASVQL-----HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF 292 (347)
T ss_dssp CCSTTTTCCEEECCEETTEE-CCEEECCCCBEEEEEEE-----CCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSS
T ss_pred CChHHCCCeEEEEEEcCCCC-EEEEEEEEEcCCCeeee-----ccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcc
Confidence 9999999 999999987543 36677788877776511 1235789999999999999999999999988765433
Q ss_pred eEE-----------eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 182 SIY-----------RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 182 ~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
... ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.+.|..+|
T Consensus 293 ~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~P 347 (347)
T 2ifg_A 293 IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP 347 (347)
T ss_dssp EEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECSCCCC
T ss_pred eeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCc-eeeEEEEEecCCC
Confidence 221 2567999999999999999999999887 5677777776554
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-23 Score=165.13 Aligned_cols=183 Identities=17% Similarity=0.272 Sum_probs=122.9
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+...|....+.+|++++|.|.+.+.+.+.|.|+|++.......+.............++.... ...+++|.|.+++.+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 81 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETE 81 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCChh
Confidence 445567778999999999999998887889999965432111111111000000123444432 335669999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcCeeeCCC-C
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRENNAILPT-G 180 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~~~~-~ 180 (386)
|+|.|+|.+.+..+........|.|.. +|.+....+... ...|+.++|.|.+.+ .|.+ .++|+++|..+... .
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 160 (213)
T 3d9a_L 82 DFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 160 (213)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred hCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChh-hcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence 999999999876544334445677764 454443222211 236889999999987 5554 89999999887654 1
Q ss_pred ----------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 181 ----------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 181 ----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
........|.|.++..+|+|.|+|.|.|....
T Consensus 161 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3d9a_L 161 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 202 (213)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred ecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence 11122458999999999999999999997654
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=164.56 Aligned_cols=178 Identities=16% Similarity=0.174 Sum_probs=125.6
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce---EEeee--EEEECCCCCCCCeEEEEEEec
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---IYRGS--ILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~--~l~i~~~~~~d~g~y~C~~~~ 208 (386)
+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+...... ..... .|.|.+++.+|+|.|+|.+.|
T Consensus 9 ~P~i~~~p~--~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 85 (218)
T 1uct_A 9 MPFISAKSS--PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI 85 (218)
T ss_dssp CCCEEESSC--SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CCEEEecCC--CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence 444444332 36889999999999976 67899999998765322111 12234 899999999999999999999
Q ss_pred CCCC-ceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCc
Q psy8823 209 GVGK-GTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284 (386)
Q Consensus 209 ~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (386)
..+. ..+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|++++.. +.... . ..
T Consensus 86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~--~~~~~--~-------~~ 153 (218)
T 1uct_A 86 GHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGEL--SLPQH--Q-------SG 153 (218)
T ss_dssp TTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCS--SCCSE--E-------EC
T ss_pred CCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCc--ccccc--c-------CC
Confidence 7652 234567777765 45555444 45678999999999766777889999999976 32211 0 01
Q ss_pred eeeeEEEEeecccCCCeEEEEEEEcCCC-----ceeeEEEEEEEecC
Q psy8823 285 FTDTTIRVITIEKRQYGSYICRAANKLG-----TSEKTVELFESIIP 326 (386)
Q Consensus 285 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~p 326 (386)
.....|.|.+++.+|+|.|+|.|.|... ..+..+.|.|.+.+
T Consensus 154 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~ 200 (218)
T 1uct_A 154 EHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI 200 (218)
T ss_dssp SSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred CccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence 2467899999999999999999998642 33456777777644
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=158.62 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=125.8
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...|.. .+.+|++|+|.|.+.+ +...+.|+|++..+.. .... ......+.+|.|.+
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~-------------~~~~----~~~~~~~~~L~I~~ 63 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAV-------------DRPK----PPERINKVKFYIPD 63 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEE-------------ECCS----SCTTCCEEEEEESS
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccc-------------cccc----cCCCcceeEEEeCc
Confidence 46888888776 7899999999999864 4567999998754310 0000 01223456899999
Q ss_pred cCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCC
Q psy8823 103 IQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP 178 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~ 178 (386)
++.+|+|.|+|.+.+..+ ...+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+ +++.+.|+|++..+..
T Consensus 64 v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p--~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~ 140 (188)
T 1oll_A 64 MNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP--GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV 140 (188)
T ss_dssp CCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES--CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE
T ss_pred CCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC--CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc
Confidence 999999999999987533 2335667777764 45444322 235789999999999866 4568999999876543
Q ss_pred CCceEEeeeEEEECCCCCCCCeEEEEEEecCCC--CceeeeEEEEEE
Q psy8823 179 TGGSIYRGSILKIPQITKEDRGTYYCVAENGVG--KGTRRNIAVEVE 223 (386)
Q Consensus 179 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~~l~v~ 223 (386)
..........|.|.+++.+|+|.|+|.+.|... ...+..+.|.|.
T Consensus 141 ~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 141 QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 111112356899999999999999999987542 224556666653
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=164.16 Aligned_cols=174 Identities=18% Similarity=0.298 Sum_probs=126.8
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeC------------CCCceE----EeeeEEEECCCCCCCCeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRREN--NAIL------------PTGGSI----YRGSILKIPQITKEDRGTYYCV 205 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~----~~~~~l~i~~~~~~d~g~y~C~ 205 (386)
.+.+.+|++++|.|.+.+.+.+.+.|++.. .... ...+.. .....|.|.+++.+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ 88 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence 678899999999999998889999999832 1110 001111 1245799999999999999999
Q ss_pred EecCCC--CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCceeEEe
Q psy8823 206 AENGVG--KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQHYSIS 277 (386)
Q Consensus 206 ~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~~ 277 (386)
+.+..+ ........|.|. .+|.+...+.......|+.++|.|.+.|. |+ +.+.|++++.. +.........
T Consensus 89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~ 166 (213)
T 3mj8_L 89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTP--ITQGVKTTQP 166 (213)
T ss_dssp EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEECCC
T ss_pred eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcc--cCCCcccCCc
Confidence 999877 234566788887 67777766666666689999999999986 44 39999999987 4332111111
Q ss_pred eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 278 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
..........+.|.|.++..+|+|.|+|.|.|..+....++.
T Consensus 167 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 167 SKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp EEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred CccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 111112223567999999999999999999999987776654
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=168.75 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=126.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~ 99 (386)
+...|....+.+|++|+|.|.+.+.+ .+.+.|+|++.......+. .. .+..... .+.|+....+...+.++|.
T Consensus 29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 108 (282)
T 1qok_A 29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ 108 (282)
T ss_dssp EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence 34567788899999999999998764 5779999976332111111 00 0110000 1345655544445678999
Q ss_pred EcccCCCCCeEEEEEeEEccc---c-eeeeEEEEEEecCCe--------------eecCCCceEEEeCCccEEEEEEeee
Q psy8823 100 VKDIQETDAGYYRCQVIIGIN---N-KISAEVDLQVRRPPV--------------ISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~---~-~~~~~~~l~v~~~p~--------------~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
|.+++.+|+|.|+|.+.+..+ . .....+.|.|..+|. .....+....+.+|++++|.|.+.+
T Consensus 109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 188 (282)
T 1qok_A 109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS 188 (282)
T ss_dssp ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence 999999999999999987643 1 122345677776431 1122244567889999999999988
Q ss_pred eCCCeEEEEE--cCeeeC------------CCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 162 HPTPRISWRR--ENNAIL------------PTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 162 ~~~~~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
.+ +.+.|+| ++..+. ...+... ....|.|.+++.+|+|.|+|.+.+...........|.|.
T Consensus 189 ~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 189 SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence 88 8999999 444321 0111111 245799999999999999999987543323334455553
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=160.41 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=118.9
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCCCCCCCeEEEEEEecCC-CC-ceeeeEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITKEDRGTYYCVAENGV-GK-GTRRNIAV 220 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~-~~~~~~~l 220 (386)
.+.+|++++|.|.+.+.+. .+.|+|++..+..... .......|.|.+++.+|+|.|+|.+.|.. +. ..+..+.|
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l 93 (198)
T 1ugn_A 15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLEL 93 (198)
T ss_dssp EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEE
T ss_pred cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEE
Confidence 6889999999999988765 7999999876632111 11235679999999999999999999976 42 23566788
Q ss_pred EEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecc
Q psy8823 221 EVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 221 ~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.|.. +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|++++.. +.... .+.. .........|.|.++.
T Consensus 94 ~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~--~~~~~~~~~~----~~~~~~~~~L~i~~v~ 165 (198)
T 1ugn_A 94 VVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGED--EHPQCLNSQP----HARGSSRAIFSVGPVS 165 (198)
T ss_dssp EEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC--------CEEEC----------CCEEEEEECCCC
T ss_pred EEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCc--cCCccccccc----cCCCcceeEEEecccC
Confidence 8877 45554433 3567899999999999888 779999999887 32111 1000 0011135789999999
Q ss_pred cCCCeEEEEEEEcCCCce-----eeEEEEEEE
Q psy8823 297 KRQYGSYICRAANKLGTS-----EKTVELFES 323 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~ 323 (386)
.+|+|.|+|.|.|..+.. +..+.|.|.
T Consensus 166 ~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 166 PSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp TTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred cccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 999999999999987621 345666554
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=162.99 Aligned_cols=179 Identities=14% Similarity=0.229 Sum_probs=119.1
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
|....+.+|++|+|.|.+.+.+.+.+.|+++........+.............++.... ..++++|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~ 84 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEADDTAI 84 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHHHCeE
Confidence 67777999999999999988877889999965322111111111000000123444332 3456699999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeeeCCC-C----
Q psy8823 111 YRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAILPT-G---- 180 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~-~---- 180 (386)
|+|.+.+..+........|.|.. +|.+....+.. .+.+|+.++|.|.+.|. |++ .++|+++|..+... .
T Consensus 85 Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~ 163 (210)
T 1lk3_L 85 YFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVT 163 (210)
T ss_dssp EEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEEC
T ss_pred EEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccC
Confidence 99999876543333445677764 44444322221 12368999999999874 443 89999999877544 1
Q ss_pred ------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 181 ------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 181 ------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
......+.|.|.++..+|+|.|+|.+.|....
T Consensus 164 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 164 DQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp CCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred CccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 11122347999999999999999999997654
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-22 Score=161.63 Aligned_cols=180 Identities=19% Similarity=0.314 Sum_probs=120.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCC-----CeEEEEEcCeeeC---------CC------CceEE-------eeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPT-----PRISWRRENNAIL---------PT------GGSIY-------RGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~---------~~------~~~~~-------~~~~l~i~~~ 194 (386)
+..+.+.+|++++|.|.+.+.|. ..+.|++++..+. .. .+... ....|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 87 (222)
T 3sbw_C 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV 87 (222)
T ss_dssp CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence 45567889999999999877663 3799999753221 00 11111 1347999999
Q ss_pred CCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCcee
Q psy8823 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
+.+|+|.|+|.+.+ .+. ....+.|.|..+|..........+..|+.+.|.|.+.|+|.|.+.|++++... +......
T Consensus 88 ~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~-~~~~~~~ 164 (222)
T 3sbw_C 88 KLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV-LSGKTTT 164 (222)
T ss_dssp CGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE-ECCEEEE
T ss_pred ccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCce-ecCccce
Confidence 99999999999998 333 55677888876554222111124568999999999999999999999984431 2222221
Q ss_pred EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 275 SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
........ ......+..+..+|.|.|+|.|.|..|....++.|.|...|.
T Consensus 165 ~~~~~~~~---~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 165 TNSKREEK---LFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL 214 (222)
T ss_dssp EECC-------CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred EEEcCCCC---CEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence 11111111 112222334567899999999999999999999998875553
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=156.47 Aligned_cols=165 Identities=18% Similarity=0.259 Sum_probs=126.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+|.+.+.+....+.+|++++|.|.+.+.+ ...+.|++++..+... ...+.|.
T Consensus 3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~--------------------------~~~~~~~ 56 (170)
T 3ry4_A 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH--------------------------TQPSYRF 56 (170)
T ss_dssp CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC--------------------------CSSEEEE
T ss_pred CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC--------------------------ccceEEE
Confidence 457788888877899999999999998775 5689999987654210 1146778
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~ 180 (386)
+++.+|+|.|+|.+.+ ...+..+.|.|..++...... ...+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus 57 ~~~~~d~G~Y~C~~~~---~~~s~~~~l~v~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~- 130 (170)
T 3ry4_A 57 KANNNDSGEYTCQTGQ---TSLSDPVHLTVLFEWLVLQTP--HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS- 130 (170)
T ss_dssp ECCGGGCEEEEEEETT---SBCCCCEEEEEECCSEEEECS--CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE-
T ss_pred ecccccCeEEEEEEeC---CCceEeEEEEEECCceEecCC--CceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc-
Confidence 9999999999999874 334556788888776554432 3457899999999999 45566899999998876421
Q ss_pred ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 181 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
.....|.|.+++.+|+|.|+|.+.|..+...+..+.|.|
T Consensus 131 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 131 ---HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp ---SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ---CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 235679999999999999999999988765566666665
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=161.31 Aligned_cols=176 Identities=20% Similarity=0.309 Sum_probs=123.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee--e----------C-C-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA--I----------L-P-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~----------~-~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.|.+.+.|++++.. . . . ...... ....|.|.+++.+|+|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3d9a_L 8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (213)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence 4556788999999999999988889999985421 1 0 0 011111 1348999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeEEe-
Q psy8823 204 CVAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYSIS- 277 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~- 277 (386)
|.+.+..+........+.|.. +|.+...........|+.++|.|.+.| .|++ .+.|++++.. +.........
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~--~~~~~~~~~~~ 165 (213)
T 3d9a_L 88 CQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVLNSWTD 165 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEEEECC
T ss_pred EeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCc--CcceeeecCCC
Confidence 999997765334445666654 666666555444557899999999988 6665 8999999987 4443111111
Q ss_pred -eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 278 -HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 278 -~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
..........+.|.|.++..+|+|.|+|.|.|..........
T Consensus 166 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3d9a_L 166 QDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKS 208 (213)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEE
T ss_pred ccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEE
Confidence 111111223568999999999999999999999876544433
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=158.98 Aligned_cols=176 Identities=15% Similarity=0.276 Sum_probs=127.1
Q ss_pred CceEEEeCCccEEEEEEeeeeCCC---eEEEEEcCeeeCCCCc-------------------------eEEeeeEEEECC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTP---RISWRRENNAILPTGG-------------------------SIYRGSILKIPQ 193 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~-------------------------~~~~~~~l~i~~ 193 (386)
+..+.+.+|++++|.|.+.+.+.+ .++|+|++........ ......+|.|.+
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 85 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence 456788999999999999887765 4899998754321100 001134699999
Q ss_pred CCCCCCeEEEEEEecCCCCceeeeEEEEEEecce-EeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc
Q psy8823 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ 272 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~ 272 (386)
++.+|+|.|.|.+.+..+........+.+..++. .........+..|+.+.+.|.+.|.|+|.++|++++.. +....
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~--~~~~~ 163 (218)
T 4frw_A 86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG--TTSSR 163 (218)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC--EEEEE
T ss_pred ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc--cccCc
Confidence 9999999999999886665444445555544443 33344556677889999999999999999999999877 33222
Q ss_pred eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 273 HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
... ........+.|.|.++..+|+|.|+|.|.|+.|..+..+.+.|.
T Consensus 164 ~~~----~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 164 SFK----HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp EEE----CSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred eEe----cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 211 11222346689999999999999999999999988776666553
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=167.38 Aligned_cols=180 Identities=14% Similarity=0.192 Sum_probs=123.5
Q ss_pred CceEEEeCCccEEEEEEeee---eCCCeEEEEEcCeeeC----C-------------------------CC-ceEEe---
Q psy8823 142 TRSLVVSEGQPVQLECFAGG---HPTPRISWRRENNAIL----P-------------------------TG-GSIYR--- 185 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~----~-------------------------~~-~~~~~--- 185 (386)
+..+.+.+|++++|.|.+.+ .+.+.+.|++++.... . .. +....
T Consensus 9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 88 (250)
T 2fbo_J 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA 88 (250)
T ss_dssp CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence 44667899999999999987 7788999999874320 0 00 00011
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCCc----eeeeEEEEEEec---ceEee-CCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGKG----TRRNIAVEVEFA---PVITV-PKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~----~~~~~~l~v~~~---p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
...|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|..+ |.+.. .+....+.+|+.+.|.|.+.|.|.|.+
T Consensus 89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v 168 (250)
T 2fbo_J 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV 168 (250)
T ss_dssp SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence 2479999999999999999999876642 245777888764 33333 233456678999999999999999999
Q ss_pred EEEeCCeeeeeecCceeEEee-----------eeecCce---eeeEEEEeecccCCCeEEEEEEEcCC---CceeeEEEE
Q psy8823 258 VWIKEDTQQVLTNNQHYSISH-----------FATADEF---TDTTIRVITIEKRQYGSYICRAANKL---GTSEKTVEL 320 (386)
Q Consensus 258 ~W~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l 320 (386)
.|++++..+............ ....... ....|.|.++..+|+|.|+|.|.|.. |....++.|
T Consensus 169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l 248 (250)
T 2fbo_J 169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL 248 (250)
T ss_dssp EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence 999998763221111110000 0000011 23689999999999999999999955 455556555
Q ss_pred E
Q psy8823 321 F 321 (386)
Q Consensus 321 ~ 321 (386)
.
T Consensus 249 ~ 249 (250)
T 2fbo_J 249 K 249 (250)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=166.30 Aligned_cols=225 Identities=16% Similarity=0.235 Sum_probs=125.3
Q ss_pred CCcccchhHHHHHHHhhhcccccCCeeeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCc
Q psy8823 1 MESKGFIFGFVLFFLINLTTAQRTPTISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGS 76 (386)
Q Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~ 76 (386)
|+...++++++++++.... ......+ ..+....+.+|++|+|.|.+.+.+ .+.+.|+|+........+. .. .+.
T Consensus 1 m~~~~~~~~ll~ll~~~~~-~~~~~~v-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~ 78 (291)
T 2gki_A 1 MKQSTIALALLPLLFTPVT-KAREVQL-QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYND 78 (291)
T ss_dssp -----------------------CCEE-EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTT
T ss_pred CceehhHHHHHHHHHhhcc-ccccEEE-EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCC
Confidence 5655444444433333222 2222333 346677899999999999998665 4679999975322111111 00 010
Q ss_pred eeEE---eccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEcccc----eeeeEEEEEEecC---------------
Q psy8823 77 SLII---RDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINN----KISAEVDLQVRRP--------------- 134 (386)
Q Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~--------------- 134 (386)
.... ...|+....+...++++|.|.+++.+|+|.|+|.+.+...+ .....+.|.|..+
T Consensus 79 ~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~ 158 (291)
T 2gki_A 79 GTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGS 158 (291)
T ss_dssp EEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------
T ss_pred ccccCcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCc
Confidence 0000 12455544433445779999999999999999999875311 1123456777651
Q ss_pred CeeecCCCceEEEeCCccEEEEEEeeeeCCC------eEEEEEcC--eee---CC---------CCceEE----eeeEEE
Q psy8823 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTP------RISWRREN--NAI---LP---------TGGSIY----RGSILK 190 (386)
Q Consensus 135 p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~------~v~W~~~~--~~~---~~---------~~~~~~----~~~~l~ 190 (386)
+......+..+.+.+|++++|.|.+.+.+.+ .+.|+++. ... .. ..+... ....|.
T Consensus 159 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~ 238 (291)
T 2gki_A 159 DLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLT 238 (291)
T ss_dssp CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred cceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEE
Confidence 1222233456778999999999999887665 89999963 211 10 111111 134799
Q ss_pred ECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce
Q psy8823 191 IPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227 (386)
Q Consensus 191 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~ 227 (386)
|.+++.+|+|.|+|.+.+........-..|.|...+.
T Consensus 239 I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~~ 275 (291)
T 2gki_A 239 ISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHHH 275 (291)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC--
T ss_pred ECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEeeEc
Confidence 9999999999999999985432222334555554443
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=166.80 Aligned_cols=185 Identities=18% Similarity=0.280 Sum_probs=120.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
..+.+...|....+.+|++|+|.|.+.+.+.+.+.|+|++.......+...........+.++.... ...+++|.|.+
T Consensus 11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~ 88 (276)
T 3auv_A 11 GDIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISS 88 (276)
T ss_dssp -CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESS
T ss_pred cceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec--cCCeEEEEEcc
Confidence 3456777778888999999999999998888889999976432111111111100000133444432 34566899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe-------------eecCCCceEEEeCCccEEEEEEeeeeC--CCeE
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV-------------ISDNSTRSLVVSEGQPVQLECFAGGHP--TPRI 167 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v 167 (386)
++.+|+|.|+|.+.+..+........|.|..+|. +....+....+.+|++++|.|.+.+.+ .+.+
T Consensus 89 v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v 168 (276)
T 3auv_A 89 LQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWI 168 (276)
T ss_dssp CCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred CChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEE
Confidence 9999999999999875433233345566655431 212223456788999999999998776 4789
Q ss_pred EEEEcC--eee---C--------------CCCceEEe------eeEEEECCCCCCCCeEEEEEEecC
Q psy8823 168 SWRREN--NAI---L--------------PTGGSIYR------GSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 168 ~W~~~~--~~~---~--------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.|++++ ... . ...+.... ...|.|.+++.+|+|.|+|.+.|.
T Consensus 169 ~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 169 HWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp EEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 999964 111 0 01111111 237999999999999999999997
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=164.00 Aligned_cols=193 Identities=20% Similarity=0.270 Sum_probs=125.7
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCC--ceeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTG--SSLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++|+|.|.+.+.+ .+.+.|+|+........+..... .... ....++.+..+...+.++|.|.++
T Consensus 9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 4567799999999999998776 56799999653221111110000 0000 012456555544556779999999
Q ss_pred CCCCCeEEEEEeEEccc-ceeeeEEEEEEecCC--------------eeecCCCceEEEeCCccEEEEEEeeeeCCCeEE
Q psy8823 104 QETDAGYYRCQVIIGIN-NKISAEVDLQVRRPP--------------VISDNSTRSLVVSEGQPVQLECFAGGHPTPRIS 168 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~ 168 (386)
+.+|+|.|+|.+.+... ........|.|..++ ......+..+.+.+|++++|.|.+.+.+.+.+.
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~ 168 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA 168 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence 99999999999987621 122344567776542 111122445678899999999999998888999
Q ss_pred EEE--cCeeeC-----------C-CCceE----EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 169 WRR--ENNAIL-----------P-TGGSI----YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 169 W~~--~~~~~~-----------~-~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
|+| ++..+. . ..... .....|.|.+++.+|+|.|+|.+.+...........|.|.
T Consensus 169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 999 444321 0 01111 1245799999999999999999998654433344455553
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=154.11 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=120.0
Q ss_pred eEEEeCCccEEEEEEeeeeC-CCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
...+.+|+.+.|.|.+.+.| .+.+.|++++..+... ...+.+.+++.+|+|.|+|.+.+... +..+.|.|
T Consensus 13 ~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v 83 (170)
T 3ry4_A 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLTV 83 (170)
T ss_dssp CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------CSSEEEEECCGGGCEEEEEEETTSBC---CCCEEEEE
T ss_pred CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------ccceEEEecccccCeEEEEEEeCCCc---eEeEEEEE
Confidence 34578999999999998876 5789999999887654 23467788999999999999997533 35678888
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
..+|.+... +...+.+|+.+.|.|.+.+ .|.+.+.|++++..+.... ....|.|.++..+|+|
T Consensus 84 ~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~---------------~~~~L~i~~v~~~d~G 147 (170)
T 3ry4_A 84 LFEWLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH---------------LDPTFSIPQANHSHSG 147 (170)
T ss_dssp ECCSEEEEC-SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES---------------SCCEEEESSCCGGGCE
T ss_pred ECCceEecC-CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC---------------CCCeEEEEeccccCCE
Confidence 877755443 3456778999999999954 5567999999988732111 2567999999999999
Q ss_pred EEEEEEEcCCCc-eeeEEEEEE
Q psy8823 302 SYICRAANKLGT-SEKTVELFE 322 (386)
Q Consensus 302 ~Y~C~a~n~~g~-~~~~~~l~v 322 (386)
.|+|.|.|..|. .+..+.|.|
T Consensus 148 ~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 148 DYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEEEEEEETTEEEECCCEEEEE
T ss_pred EEEEEEEeCcCccccccEEEEE
Confidence 999999999997 445666655
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=162.14 Aligned_cols=185 Identities=19% Similarity=0.278 Sum_probs=123.4
Q ss_pred ccceeeecCCcEEEEEEEeeC-------CCCcEEEEecCCccccccccccCCc---eeEEeccceeeecCCCcceEEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA-------QDYPVIWMKVDRNKVTEPLPISTGS---SLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~-------~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
|....+.+|++|+|.|.+.+. +...+.|+|++.......+....+. ......+|+.+..+...++++|.|
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I 86 (214)
T 2zg1_A 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI 86 (214)
T ss_dssp CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence 556678999999999998854 4567999998764321111111110 001123455555544456778999
Q ss_pred cccCCCCCeEEEEEeEEccccee---eeEEEEEEecCC---eeecCCCceEEEeCCccEEEEEEeeee----CCCeEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKI---SAEVDLQVRRPP---VISDNSTRSLVVSEGQPVQLECFAGGH----PTPRISWR 170 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~~p---~~~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~ 170 (386)
.+++.+|+|.|+|.+.+..+... +..+.|.|..++ .+.. +. .+.+|+.++|.|.+.+. |.+.++|+
T Consensus 87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~--~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~ 162 (214)
T 2zg1_A 87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF--LE--PLESGRPTRLSCSLPGSCEAGPPLTFSWT 162 (214)
T ss_dssp CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----C--CCCTTCCEEEEEECTTCCSCSSCCEEEEE
T ss_pred ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec--Cc--cccCCCeEEEEEEeccCCCCCCCceEEEe
Confidence 99999999999999987643222 246778887643 3322 12 25689999999999763 78899999
Q ss_pred EcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEE
Q psy8823 171 RENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVE 221 (386)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~ 221 (386)
+++...... .....+.|.|..+..+|+|.|+|.+.|..+. ..+..+.|.
T Consensus 163 ~~~~~~~~~--~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 163 GNALSPLDP--ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212 (214)
T ss_dssp SSTTSSSCS--SCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred CCCCccCCC--CceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence 998654322 1235678999999999999999999997533 234444443
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-23 Score=169.36 Aligned_cols=185 Identities=13% Similarity=0.174 Sum_probs=118.0
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCC-C-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQD-Y-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~-~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+.+.. |....+.+|++|+|.|.+.+.+. . .+.|+|++.......+.............++.... ..++++|.|.
T Consensus 20 ~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 96 (234)
T 2j6e_L 20 QSVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAIS 96 (234)
T ss_dssp CCCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEEE
T ss_pred ccEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEEC
Confidence 344544 77778999999999999986443 3 69999975322111111111110001123444332 3456799999
Q ss_pred ccCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcC
Q psy8823 102 DIQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRREN 173 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~ 173 (386)
+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+.. ...+|+.++|.|.+.+.++ +.++|+++|
T Consensus 97 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g 175 (234)
T 2j6e_L 97 GLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLISDFFPGAVTVAWKADG 175 (234)
T ss_dssp SCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCH-HHHTTSCCCEEECCCBCSSCCCEEEEEETT
T ss_pred CCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCCh-hHhcCCceEEEEEEEEEcCCceEEEEEECC
Confidence 99999999999999986552 223345566632 33332211111 1235889999999987544 389999999
Q ss_pred eeeCCCCc----------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPTGG----------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+..... .......|.|.++..+|+|.|+|.|.|....
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 224 (234)
T 2j6e_L 176 APVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 224 (234)
T ss_dssp EECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred EECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence 87754311 1112356899999999999999999997654
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-22 Score=156.60 Aligned_cols=164 Identities=13% Similarity=0.178 Sum_probs=118.7
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVE 221 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~ 221 (386)
.+.+|++++|.|.+.+ +++.+.|+|++..+.... .....+..|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.
T Consensus 14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~ 92 (188)
T 1oll_A 14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 92 (188)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEE
Confidence 5889999999999865 356899999998764211 11224567999999999999999999886432 235567777
Q ss_pred EEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
|.. +|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|++++..... . .. .......|.|.+++.+
T Consensus 93 V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~--~--~~-------~~~~~~~L~I~~v~~~ 159 (188)
T 1oll_A 93 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV--Q--RG-------YGKVQAEFPLGPVTTA 159 (188)
T ss_dssp EESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE--E--EE-------ECSSEEEEEEEECCGG
T ss_pred ecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc--c--cc-------CCCceeEEEECCCCcC
Confidence 764 55565443 455789999999999865 4568999999876322 1 00 0124678999999999
Q ss_pred CCeEEEEEEEcCCC---ceeeEEEEEEE
Q psy8823 299 QYGSYICRAANKLG---TSEKTVELFES 323 (386)
Q Consensus 299 d~G~Y~C~a~n~~g---~~~~~~~l~v~ 323 (386)
|+|.|+|.|.|... ..+..+.|.|.
T Consensus 160 d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 160 HRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp GCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred CCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 99999999998752 23345666654
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=158.02 Aligned_cols=173 Identities=17% Similarity=0.274 Sum_probs=120.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee----------C-C-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI----------L-P-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~----------~-~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+++. ..+ . . ...... ....|.|.+++.+|+|.|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF 86 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence 45677899999999999998888899999853 211 0 0 111111 1348999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCcee--EE
Q psy8823 204 CVAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHY--SI 276 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~--~~ 276 (386)
|.+.+..+........+.|.. +|.+...++......|+.++|.|.+.| .|++ .+.|++++.. +...... ..
T Consensus 87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~--~~~~~~~~~~~ 164 (210)
T 1lk3_L 87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTE--RRDGVLDSVTD 164 (210)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE--CCTTEEEEECC
T ss_pred EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCcc--CCCCceEccCC
Confidence 999987664333344666654 566665444444557999999999987 4554 8999999987 4333111 11
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
...........+.|.|.++..+|+|.|+|.|.|.......
T Consensus 165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (210)
T 1lk3_L 165 QDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPV 204 (210)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCE
T ss_pred ccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCee
Confidence 1111112224568999999999999999999998775443
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=160.52 Aligned_cols=185 Identities=15% Similarity=0.210 Sum_probs=124.6
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+.+...+....+.+|++|+|.|.+.+.+.+.+.|+|..............+........++... ...++++|.|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~ 79 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGS--GSGRDSSFTISSLE 79 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCC
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEe--ccCCEEEEEECCCC
Confidence 4566667778899999999999999888889999996533211111111111111123455444 23467799999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEE---ecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCeeeCCC
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQV---RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNAILPT 179 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~ 179 (386)
.+|+|.|+|.+.+..+........|.| ..+|.+...... ..+..|+.++|.|.+.+.++ +.++|++++..+...
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 158 (213)
T 3r06_A 80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPS-SEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG 158 (213)
T ss_dssp GGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred cccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCC-ceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence 999999999998654444455566777 344544432222 12346778999999988654 389999999887543
Q ss_pred C-----------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 180 G-----------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 180 ~-----------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
. ........|.|.....+|+|.|+|.+.|....
T Consensus 159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~ 202 (213)
T 3r06_A 159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST 202 (213)
T ss_dssp EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence 1 11222456888888889999999999997644
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=158.38 Aligned_cols=173 Identities=23% Similarity=0.312 Sum_probs=122.2
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEe----ccceeeecC-CCcceEEEEEcccCCCC
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR----DSRFAIRYD-TASSTYTLLVKDIQETD 107 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~L~i~~~~~~d 107 (386)
...+.+|++++|.|.+.+.+.+.+.|++++...... . ........ ..++..... ...++.+|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~---~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D 79 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILG---N-QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIED 79 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEE---E-ETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGG
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEE---e-cCceEecCChhhCCccccccccccCCeEEEEEecCCHHH
Confidence 345889999999999988888899999987532100 0 00000011 122322211 12345579999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeee
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS 187 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 187 (386)
+|.|+|.+.+.. ..+.|.|...+ . +....+.+|+.++|.|.+.+.|.+.+.|++++..+ .....
T Consensus 80 ~G~Y~C~~~~~~-----~~~~l~V~~~~---~--~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~ 143 (184)
T 2ny1_B 80 SDTYICEVEDQK-----EEVQLLVFGLT---A--NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGK 143 (184)
T ss_dssp CEEEEEEETTEE-----EEEEEEEEEEE---E--SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEESS
T ss_pred CEEEEEEEEcCC-----CcEEEEEEEec---C--CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCce
Confidence 999999986432 24556665321 1 12236789999999999988899999999987654 33567
Q ss_pred EEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 188 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
.|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|...|
T Consensus 144 ~L~i~~v~~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~p 181 (184)
T 2ny1_B 144 TLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQ 181 (184)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCC
T ss_pred EEEEecCCcCCCeEEEEEEEECCce-EEEEEEEEEEecC
Confidence 8999999999999999999987665 5667778777655
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-22 Score=164.21 Aligned_cols=200 Identities=19% Similarity=0.200 Sum_probs=130.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccc-c-CCceeE---EeccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPI-S-TGSSLI---IRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~-~-~~~~~~---~~~~~~~~~~~~~~~~~~L~ 99 (386)
+...+....+.+|++|+|.|.+.+.+ .+.+.|+|.........+.. . .+.... ...+++....+.....++|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 44566778899999999999988643 56799999443221111100 0 000000 11346666665666778899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC---------------CeeecCCCceEEEeCCccEEEEEEeeeeCC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP---------------PVISDNSTRSLVVSEGQPVQLECFAGGHPT 164 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~ 164 (386)
|.+++.+|+|.|+|.+.+...........|.|... +.+. ..+....+.+|++++|.|.+.+.+.
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~ 162 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMT-QTPASLAVSLGQRATISCRASENVD 162 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEE-EECSEEEECTTSCEEEEEEESSCCE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEE-CcCCeEEEeCCCCEEEEEEecCccc
Confidence 99999999999999998744433345566777642 2222 2345577899999999999988776
Q ss_pred C----eEEEEEcC--eeeC-----------C-CCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 165 P----RISWRREN--NAIL-----------P-TGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 165 ~----~v~W~~~~--~~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+ .+.|++++ .... . ..+... ....|.|.+++.+|+|.|+|.+.|...........|.|
T Consensus 163 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v 242 (253)
T 3uzq_A 163 RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI 242 (253)
T ss_dssp ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence 6 89999853 2111 0 011111 13469999999999999999999865544445556666
Q ss_pred Eecce
Q psy8823 223 EFAPV 227 (386)
Q Consensus 223 ~~~p~ 227 (386)
...+.
T Consensus 243 ~~~~~ 247 (253)
T 3uzq_A 243 KRPLE 247 (253)
T ss_dssp CCC--
T ss_pred cCCCC
Confidence 55443
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=161.96 Aligned_cols=175 Identities=15% Similarity=0.243 Sum_probs=119.3
Q ss_pred ceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 33 EQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
...+.+|++|+|.|.+. +.+.+.|+|+......................++.... ...+++|.|.+++.+|+|.|+
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~ 84 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQTDDEAVYY 84 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCGGGCEEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCChhHCEEEE
Confidence 66789999999999998 77889999964322111111111111001223444433 345679999999999999999
Q ss_pred EEeEEccc-ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCeeeCCC------
Q psy8823 113 CQVIIGIN-NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRRENNAILPT------ 179 (386)
Q Consensus 113 C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~------ 179 (386)
|.+.+..+ ......+.|.|. .+|.+....... .+.+|+.++|.|.+.+.+ .+.+.|+++|..+...
T Consensus 85 C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~ 163 (211)
T 3tv3_L 85 CGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTP 163 (211)
T ss_dssp EEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCH-HHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCC
T ss_pred EEEecCCCceeECCCceEEEeCCCCcCCeeEecCCch-hhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCc
Confidence 99998655 345566778887 455444332221 223699999999998863 4789999999887542
Q ss_pred ----CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 180 ----GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 180 ----~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.........|.|.++..+|+|.|+|.+.|..+.
T Consensus 164 ~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~ 200 (211)
T 3tv3_L 164 SKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 200 (211)
T ss_dssp EECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred eECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence 112223457999999999999999999997654
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=170.33 Aligned_cols=188 Identities=18% Similarity=0.247 Sum_probs=123.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEec----cceeeecCCCcceEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L 98 (386)
..+.+...+....+.+|++|+|.|.+. .+...+.|+|.........+....+....... +|+....+ ..++++|
T Consensus 25 ~~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL 102 (268)
T 3pl6_D 25 GGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP-EGSVSTL 102 (268)
T ss_dssp --SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEE
T ss_pred cCceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec-CCCEEEE
Confidence 345566667777899999999999986 56678999995432211111111111111111 56655543 3567899
Q ss_pred EEcccCCCCCeEEEEEeEEc-ccceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEE
Q psy8823 99 LVKDIQETDAGYYRCQVIIG-INNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISW 169 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W 169 (386)
.|.+++.+|+|.|+|.+.+. ..........|.|.. +|.+....+....+.+|+.++|.|.+.+.+++ .++|
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 182 (268)
T 3pl6_D 103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 182 (268)
T ss_dssp EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEE
Confidence 99999999999999999863 223334455677765 44433322333334568999999999886654 8999
Q ss_pred EEcCeeeCCC---------------CceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 170 RRENNAILPT---------------GGSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+++|..+... +........|.|.....+| +|.|+|.+.|....
T Consensus 183 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 183 WVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp EESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 9999887542 1222234567888887777 99999999986543
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-21 Score=153.72 Aligned_cols=166 Identities=18% Similarity=0.164 Sum_probs=116.2
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|. ..+.+|++|+|.|.+. .+.+.+.|+|++..+.... ...+ ......+..|.|.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~-----------~~~~----~~~~~~~~~l~I~ 68 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLR-----------LIGE----HHDGVSKANFSIS 68 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEE-----------EECE----EETTEEEEEEEES
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcce-----------eeee----cCCCCceEEEEec
Confidence 45678887776 6688999999999987 4667899999886542100 0000 0112245589999
Q ss_pred ccCCCCCeEEEEEeEEccc----ceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe
Q psy8823 102 DIQETDAGYYRCQVIIGIN----NKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN 174 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~ 174 (386)
+++.+|+|.|+|.+.+... ...+..+.|.|... |.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|++.
T Consensus 69 ~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~--~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~ 145 (201)
T 1nkr_A 69 RMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG--PTVLAGENVTLSCSSRS-SYDMYHLSREGE 145 (201)
T ss_dssp SCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC--SEECTTCEEEEEEEESS-CCSEEEEEETTC
T ss_pred cCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC--CccCCCCeEEEEEeCCC-CCceEEEEECCc
Confidence 9999999999999976421 23456677777643 44433222 35789999999999876 567899999987
Q ss_pred eeCCCCce-E----EeeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 175 AILPTGGS-I----YRGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 175 ~~~~~~~~-~----~~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.+...... . .....|.|.+++ |+|.|+|.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 146 AHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp SSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred ccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 65432111 1 125679999998 999999999865
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=160.90 Aligned_cols=180 Identities=17% Similarity=0.222 Sum_probs=126.7
Q ss_pred CCceEEEeCCccEEEEEEeeeeCC-CeEEEEEcCeeeC---------C----CCce-----------EEeeeEEEECCCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPT-PRISWRRENNAIL---------P----TGGS-----------IYRGSILKIPQIT 195 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~---------~----~~~~-----------~~~~~~l~i~~~~ 195 (386)
.+..+.+.+|+.+.|.|.+.+.+. +.+.|++++.... . .... ......|.|.+++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~ 85 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ 85 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence 355678899999999999988885 8999998764421 0 0011 1122459999999
Q ss_pred CCCCeEEEEEEecCCCCceeeeEEEEEEecc---eEeeCCCcccccCCCcE-EEEEEE-EecCCCeeEEEeCCeeeeeec
Q psy8823 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEFAP---VITVPKPRLGQALQYDM-DLECHV-EAYPPPAIVWIKEDTQQVLTN 270 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~g~p~~~~~W~~~~~~~~~~~ 270 (386)
.+|+|.|+|.+.+.........+.|.|..+| .+...+....+..|+.+ .|.|.+ .|.|.|.+.|++++.. +..
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~--~~~ 163 (231)
T 2pet_A 86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQR--LEV 163 (231)
T ss_dssp GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEE--CCC
T ss_pred cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCcc--Ccc
Confidence 9999999999998763336678888888774 44555556667788887 999999 8999999999999987 333
Q ss_pred Cc----eeEEeeee----ecCceeeeEEEEeecccCCCeEEEEEEEcC-----CCc-eeeEEEEEE
Q psy8823 271 NQ----HYSISHFA----TADEFTDTTIRVITIEKRQYGSYICRAANK-----LGT-SEKTVELFE 322 (386)
Q Consensus 271 ~~----~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~-----~g~-~~~~~~l~v 322 (386)
.. ++.+.... .......+.|.|.....+|.|.|+|.|.|. .|. .+..+.|.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp CSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred ccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 32 22222111 111122367888866777799999999994 444 444555544
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-21 Score=156.52 Aligned_cols=185 Identities=16% Similarity=0.245 Sum_probs=114.1
Q ss_pred cceeeecCCcEEEEEEEeeCCCC---cEEEEecCCccccccccccCCceeE-----Eeccceee-ecCCCcceEEEEEcc
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLPISTGSSLI-----IRDSRFAI-RYDTASSTYTLLVKD 102 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~L~i~~ 102 (386)
.+..+.+|++|+|.|.+.+.+.+ .|.|+|++....- .....+.... ....|... ......++++|.|.+
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v--~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 89 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVV--NVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN 89 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEE--EEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceE--EEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence 45668999999999999865443 5999998754310 0011111000 00112221 223345678999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCc
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~ 181 (386)
++.+|+|.|+|.+.|..+ .....+.+.+..++.. ......+.+|+.+.|.|.+.+ .|.|.++|+++++.+.....
T Consensus 90 v~~~D~G~Y~C~a~n~~~-~~~~~v~~~~~~~~~~---~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~ 165 (226)
T 4f80_A 90 VTASDSGKYLCYFQDGDF-YEKALVELKVAALGSD---LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVE 165 (226)
T ss_dssp CCGGGCEEEEEEEEETTE-EEEEEEEEEEEBCCCC---CEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEE
T ss_pred CchHHCeeEEEEEECCCc-EEEEEEEEeeccceec---ccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCc
Confidence 999999999999987543 2344444444333221 233456778999999999987 58999999997665543322
Q ss_pred eE-E-e-e---eEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 182 SI-Y-R-G---SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 182 ~~-~-~-~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
.. . . . ..+.+.+++.+|+|.|+|.|.|..+. ..+...|.|.
T Consensus 166 ~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~-~~~~~~v~v~ 212 (226)
T 4f80_A 166 APVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG-LEKTASISIA 212 (226)
T ss_dssp CCCEECTTSCEEEEEEEEECC----CEEEEEEETTTT-EEEEEEECCC
T ss_pred eEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCC-eEEEEEEEEC
Confidence 11 1 1 1 12344467789999999999999887 5566666654
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=163.12 Aligned_cols=196 Identities=19% Similarity=0.236 Sum_probs=127.7
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccccc--CCceeE---EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPIS--TGSSLI---IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++|+|.|.+.+.+ .+.+.|+|.........+... .+.... ...+|+....+.....++|.|.+
T Consensus 8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 87 (256)
T 3umt_A 8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS 87 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence 34556689999999999998755 577999985533211111100 000000 12356666655556678899999
Q ss_pred cCCCCCeEEEEEeEEcc---cceeeeEEEEEEec----------------CCeeecCCCceEEEeCCccEEEEEEeeeeC
Q psy8823 103 IQETDAGYYRCQVIIGI---NNKISAEVDLQVRR----------------PPVISDNSTRSLVVSEGQPVQLECFAGGHP 163 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~ 163 (386)
++.+|+|.|+|.+.+.. .......+.|.|.. ++.+.. .+....+.+|++++|.|.+.+.+
T Consensus 88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~v~~G~~v~L~C~~~~~~ 166 (256)
T 3umt_A 88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQ-SPSSLSASLGERVSITCRASQDI 166 (256)
T ss_dssp CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEE-ECSEEEECTTCCEEEEEEESSCC
T ss_pred CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEc-CCCeEEEECCCCEEEEEEEecCC
Confidence 99999999999998651 22234456677764 333332 24557789999999999999888
Q ss_pred CCeEEEEEcC--eeeC------------CCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec
Q psy8823 164 TPRISWRREN--NAIL------------PTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA 225 (386)
Q Consensus 164 ~~~v~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~ 225 (386)
.+.+.|+++. .... ...+... ....|.|.+++.+|+|.|+|.+.+...........|.|..+
T Consensus 167 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~ 246 (256)
T 3umt_A 167 GSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA 246 (256)
T ss_dssp TTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred CcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence 8899999852 2111 0011111 13469999999999999999999865544445566777654
Q ss_pred c
Q psy8823 226 P 226 (386)
Q Consensus 226 p 226 (386)
+
T Consensus 247 ~ 247 (256)
T 3umt_A 247 A 247 (256)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=158.04 Aligned_cols=144 Identities=19% Similarity=0.309 Sum_probs=107.1
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECC-CCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ-ITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
...+|++++|.|.+.+ ++ .++|+|++..+... .+..|.|.+ ++.+|+|.|+|.+.|..+. ....+.+.|..
T Consensus 10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~~~v~~ 81 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYLKARVGS 81 (186)
T ss_dssp EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEECCCCCS
T ss_pred EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----CCCEEEECCCCccccCEEEEEEEEeCCCc-EEEEEEEEEec
Confidence 3467999999999987 43 49999999988654 234799999 9999999999999998776 33344443322
Q ss_pred --cceEee----------------CC----C---cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeee
Q psy8823 225 --APVITV----------------PK----P---RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279 (386)
Q Consensus 225 --~p~~~~----------------~~----~---~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 279 (386)
++.... .. . ...+.+|+.+.|.|.+ |.|.+.|++++.. +.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~--i~~~~~------ 150 (186)
T 1jbj_A 82 ADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSI--ISPLNA------ 150 (186)
T ss_dssp CCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEE--CCCSSC------
T ss_pred ccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEE--CcccCC------
Confidence 111000 00 0 0233489999999998 8889999999988 332111
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
....|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 ------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 ------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 36679999999999999999999999876
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-22 Score=155.95 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=113.9
Q ss_pred eEEEeCCccEEEEEEeee--eCCCeEEEEEcCeeeC----------CCCceE-EeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 144 SLVVSEGQPVQLECFAGG--HPTPRISWRRENNAIL----------PTGGSI-YRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~----------~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
.+.+.+|++++|.|...+ .+.+.+.|+|++..+. ...+.. ..++.|.|.+++.+|+|.|+|.+.|..
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~ 84 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN 84 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence 456789999999995422 4556899999986542 111111 124569999999999999999999988
Q ss_pred CCc-eeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeE
Q psy8823 211 GKG-TRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289 (386)
Q Consensus 211 ~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
+.. .+..+.|.|..++. .+.. ...+..+.|.|.+.|.|+|.+.|++++.. +.... .
T Consensus 85 g~~~~~~~~~l~V~~~~~----~p~i-~~~~~~v~L~C~~~g~p~p~i~W~~~g~~--l~~~~----------------~ 141 (176)
T 1hng_A 85 GTRILNKALDLRILEMVS----KPMI-YWECSNATLTCEVLEGTDVELKLYQGKEH--LRSLR----------------Q 141 (176)
T ss_dssp CCEEEEEEEEEEEECCCC----CCEE-EEETTTTEEEEECSSCSSCEEEEEETTEE--EEEES----------------S
T ss_pred CCEEEEEEEEEEEeCCCC----CCEE-EecCCcEEEEEEecCCCCcEEEEEECCEE--CCCCC----------------c
Confidence 874 35667777766431 0111 12244699999999999999999999987 32211 1
Q ss_pred EEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 290 IRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 290 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.|.++..+|+|.|+|.|.|..|..+.+..|.+
T Consensus 142 ~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 142 KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 345578899999999999999999988877654
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=158.55 Aligned_cols=180 Identities=14% Similarity=0.181 Sum_probs=118.9
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCe-----EEEEEcCeeeCCC---------------Cce-------EEeeeEEEECC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPR-----ISWRRENNAILPT---------------GGS-------IYRGSILKIPQ 193 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~-----v~W~~~~~~~~~~---------------~~~-------~~~~~~l~i~~ 193 (386)
.+..+.+.+|++++|.|.+.+.|.+. +.|++++...... ... ......|.|.+
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 88 (248)
T 3pv7_A 9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG 88 (248)
T ss_dssp TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence 34556788999999999998887765 9999974322100 000 00134599999
Q ss_pred CCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeee----
Q psy8823 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQV---- 267 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~---- 267 (386)
++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...+. .....|+.+.|.|.+.| +|.+ .+.|++++..+.
T Consensus 89 v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~ 166 (248)
T 3pv7_A 89 IQLEEAGEYRCEVVVTPLK-AQGTVQLEVVASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166 (248)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred CCHHHCeEEEEEEEeCCcc-ceeEEEEEEecCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence 9999999999999997765 56678889988888776544 33456778889999998 8988 999999986411
Q ss_pred eecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce--eeEEEEEE
Q psy8823 268 LTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS--EKTVELFE 322 (386)
Q Consensus 268 ~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v 322 (386)
+..... ..............+.|.|.....+|+|.|+|.|.|..+.. ..++.|.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 111110 01111112222345678999999999999999999999874 44566666
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=161.90 Aligned_cols=195 Identities=18% Similarity=0.222 Sum_probs=128.1
Q ss_pred eeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccC--CceeE---EeccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPIST--GSSLI---IRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..|....+.+|++|+|.|.+.+.+ .+.+.|+|++.......+.... +.... ..++|+.+..+...+.++|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 345667799999999999998764 5679999964321111111000 00000 0134565554444567899999
Q ss_pred ccCCCCCeEEEEEeEEcccc----eeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCC-----eEEEEE-
Q psy8823 102 DIQETDAGYYRCQVIIGINN----KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP-----RISWRR- 171 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-----~v~W~~- 171 (386)
+++.+|+|.|+|.+.+..+. .....+.|.|..++.+... +....+.+|++++|.|.+.+.+.+ .+.|+|
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~ 163 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQT-PLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ 163 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEE-CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEec-CcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence 99999999999999876331 2234567778766654432 455678999999999999887764 899999
Q ss_pred -cCeeeC-----------C-CCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 172 -ENNAIL-----------P-TGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 172 -~~~~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
++..+. . ...... ....|.|.+++.+|+|.|+|.+.+...........|.|..
T Consensus 164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 164 KPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp CTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred CCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 454331 0 111111 2357999999999999999999985443333445566643
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-22 Score=163.69 Aligned_cols=181 Identities=21% Similarity=0.245 Sum_probs=119.9
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCceeEE---eccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGSSLII---RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.+....+.+|++|+|.|.+.+.+ .+.+.|+|++.......+. ......... ...|+.+..+...+.++|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (257)
T 1f3r_B 6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL 85 (257)
T ss_dssp EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence 34556789999999999998764 6789999974221111111 010110000 13466655544456789999999
Q ss_pred CCCCCeEEEEEeEEccc--------ceeeeEEEEEEecCC--------------eeecCCCceEEEeCCccEEEEEEeee
Q psy8823 104 QETDAGYYRCQVIIGIN--------NKISAEVDLQVRRPP--------------VISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
+.+|+|.|+|.+.+..+ ......+.|.|..++ ......+..+.+.+|++++|.|.+.+
T Consensus 86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 165 (257)
T 1f3r_B 86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ 165 (257)
T ss_dssp CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence 99999999999987532 112244577777653 11112234556889999999999988
Q ss_pred eCCCeEEEEE--cCeeeCC------------CCceE----EeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 162 HPTPRISWRR--ENNAILP------------TGGSI----YRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 162 ~~~~~v~W~~--~~~~~~~------------~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
.+.+.+.|++ ++..+.. ..... .....|.|.+++.+|+|.|+|.+.|..
T Consensus 166 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 166 NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred cCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 8888999999 4443210 11111 123579999999999999999999864
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-21 Score=157.63 Aligned_cols=182 Identities=17% Similarity=0.241 Sum_probs=118.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCCceeE--EeccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STGSSLI--IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+...|....+.+|++|+|.|. .+.+.+.+.|+|+........+.. ....... ....++.... .....++|.|.++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~v 80 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILELA 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESSC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEecC
Confidence 455567778999999999999 667788899999643211111111 1110000 0123454443 2334568999999
Q ss_pred CCCCCeEEEEEeEEcccc----eeeeEEEEEEecCCe-----------eecCCCceEEEeCCccEEEEEEeeeeCCCeEE
Q psy8823 104 QETDAGYYRCQVIIGINN----KISAEVDLQVRRPPV-----------ISDNSTRSLVVSEGQPVQLECFAGGHPTPRIS 168 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~-----------~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~ 168 (386)
+.+|+|.|+|.+.+..+. .......|.|...+. .....+....+.+|++++|.|.+.+.|.+.+.
T Consensus 81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~ 160 (238)
T 2p1y_A 81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFP 160 (238)
T ss_dssp CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEE
T ss_pred CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEE
Confidence 999999999999865321 122345677765442 12222455678999999999999998889999
Q ss_pred EEEcCee-----eC---------CCCceEEe------eeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 169 WRRENNA-----IL---------PTGGSIYR------GSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 169 W~~~~~~-----~~---------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
|++++.. +. ........ ...|.|.+++.+|+|.|+|.+.|..
T Consensus 161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 9997421 10 01111111 3579999999999999999999874
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=159.13 Aligned_cols=195 Identities=20% Similarity=0.300 Sum_probs=121.7
Q ss_pred Ceeeee-ccceeeecCCcEEEEEEEeeCCCCc-----EEEEecCCccccccccc-cCCceeEEeccceeee-cCCCcceE
Q psy8823 25 PTISYI-SQEQIKDIGGTVELKCSVQYAQDYP-----VIWMKVDRNKVTEPLPI-STGSSLIIRDSRFAIR-YDTASSTY 96 (386)
Q Consensus 25 p~i~~~-~~~~~v~~G~~v~L~C~~~~~~~~~-----v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 96 (386)
+.+.+. +....+.+|++|+|.|.+.+.+.+. +.|++++.........+ ..+........+..+. .....+++
T Consensus 3 ~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
T 3pv7_A 3 LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDA 82 (248)
T ss_dssp EEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBC
T ss_pred eEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcE
Confidence 344433 3445688999999999998776654 99999765432111111 0111111111111111 11223566
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcCe
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRENN 174 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~~ 174 (386)
+|.|.+++.+|+|.|+|.+.+..+ .....+.|.|..+|.+..... .....|+.+.|.|.+.+ .|.+ .++|++++.
T Consensus 83 sL~I~~v~~~D~G~Y~C~~~~~~~-~~~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~ 159 (248)
T 3pv7_A 83 SLRLPGIQLEEAGEYRCEVVVTPL-KAQGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEAINITWEKQTQ 159 (248)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred EEEeCCCCHHHCeEEEEEEEeCCc-cceeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence 899999999999999999987643 456678889988887665433 23446778889999988 7888 999999986
Q ss_pred eeCC----------------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEEE
Q psy8823 175 AILP----------------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVEV 222 (386)
Q Consensus 175 ~~~~----------------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~v 222 (386)
.+.. ..........|.+.....+|.|.|+|.+.|..+. .....+.|.|
T Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 160 KFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp SSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 4321 1122233567899999999999999999997765 3455667777
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=157.05 Aligned_cols=190 Identities=16% Similarity=0.277 Sum_probs=120.6
Q ss_pred eccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCcee-----EEeccceeeecC-CCcceEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSL-----IIRDSRFAIRYD-TASSTYTL 98 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~L 98 (386)
.+....+.+|++++|.|.+.+.+ ...+.|++++..+ .....+... ....++..+..+ ...++.+|
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v----~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 82 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNI----IQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAAL 82 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEE----EEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEE
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEE----EEEeCCccccccccccccCceEEccccccCCEEEE
Confidence 34455688999999999987554 3469999976221 111111000 001122222211 13456799
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEc-CeeeC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRE-NNAIL 177 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~ 177 (386)
.|.+++.+|+|.|+|.+.+ .+.....+.|.|..++...... ....+.+|+.++|.|.+.|.|.+.+.|+++ +..+.
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~--~~~~~~~~~l~V~~~~~~~~~~-~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~ 159 (222)
T 3sbw_C 83 QITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQR-ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS 159 (222)
T ss_dssp EESSCCGGGCEEEEEEEES--SSEEEEEEEEEEEBCCCCCEEE-EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC
T ss_pred EEcCcccccCeEEEEEEEe--CCCceeEEEEEEECCCCCCCce-eeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec
Confidence 9999999999999999987 3445667888888766433211 112567899999999999999999999998 44433
Q ss_pred CCCceEE---eee---EEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecce
Q psy8823 178 PTGGSIY---RGS---ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPV 227 (386)
Q Consensus 178 ~~~~~~~---~~~---~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~ 227 (386)
....... ... ...+..+..+|.|.|+|.+.|..+. ....+.|.|..+|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~-~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 160 GKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPE-ENHTAELVIPELPL 214 (222)
T ss_dssp CEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTT-EEEEEEEECCCC--
T ss_pred CccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccc-eeeEEEEEecCCcc
Confidence 2211100 111 1122234568999999999999887 56777777766554
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=158.64 Aligned_cols=182 Identities=17% Similarity=0.148 Sum_probs=128.2
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...|.. .+.+|++|+|.|.+.+ +...+.|+|++..+.. ...+ ......+..|.|.
T Consensus 5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~-------------~~~~----~~~~~~~~~L~I~ 65 (242)
T 1p6f_A 5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAV-------------DRPK----PPERINKVKFYIP 65 (242)
T ss_dssp CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEE-------------ECCS----SCTTCCEEEEEEC
T ss_pred CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccc-------------cccc----ccCCcceeEEEec
Confidence 457888888877 7899999999999863 4567999998754310 0000 0112345689999
Q ss_pred ccCCCCCeEEEEEeEEccc-ceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC
Q psy8823 102 DIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL 177 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~ 177 (386)
+++.+|+|.|+|.+.+..+ ...+..+.|.|.. +|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|+|..+.
T Consensus 66 ~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p--~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~ 142 (242)
T 1p6f_A 66 DMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP--GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSH 142 (242)
T ss_dssp SCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEES--CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCE
T ss_pred CCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccC--CCccCCCCcEEEEEecCCC-CCEEEEEECCCccC
Confidence 9999999999999976432 2345667787764 45444322 2357899999999998754 46899999987653
Q ss_pred CCCceEEeeeEEEECCCCCCCCeEEEEEEecCC--CCceeeeEEEEEEec
Q psy8823 178 PTGGSIYRGSILKIPQITKEDRGTYYCVAENGV--GKGTRRNIAVEVEFA 225 (386)
Q Consensus 178 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~--~~~~~~~~~l~v~~~ 225 (386)
...........|.|.+++.+|+|.|+|.+.|.. ....+..+.|.|...
T Consensus 143 ~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 143 VQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp EEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred ccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 211111235689999999999999999998864 223466788888763
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=159.76 Aligned_cols=200 Identities=16% Similarity=0.229 Sum_probs=130.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccc-c-CCceeEE---eccceeeecCCCcce
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPI-S-TGSSLII---RDSRFAIRYDTASST 95 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~-~~~~~~~---~~~~~~~~~~~~~~~ 95 (386)
.++.+...+....+.+|++|+|.|.+.+. +.+.+.|+|.........+.. . .+..... ..+|+....+...+.
T Consensus 5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 45666777788889999999999999873 566799998653321111111 1 1111010 124666665556677
Q ss_pred EEEEEcccCCCCCeEEEEEeEEc-----------ccceeeeEEEEEEecCCe--------------eecCCCceEEEeCC
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIG-----------INNKISAEVDLQVRRPPV--------------ISDNSTRSLVVSEG 150 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~~p~--------------~~~~~~~~~~~~~g 150 (386)
++|.|.+++.+|+|.|+|.+.+. ..........|.|..++. .....+....+.+|
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G 164 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG 164 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence 89999999999999999999865 122334456677776422 12233456788999
Q ss_pred ccEEEEEEeeeeCC-CeEEEEEcC--eeeC------------CCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 151 QPVQLECFAGGHPT-PRISWRREN--NAIL------------PTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 151 ~~v~l~C~~~~~~~-~~v~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
++++|.|.+.+.+. +.+.|++.. .... ...+... ....|.|.+++.+|+|.|+|.+.|...
T Consensus 165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 99999999988776 899999842 2111 0111111 134699999999999999999998654
Q ss_pred CceeeeEEEEE
Q psy8823 212 KGTRRNIAVEV 222 (386)
Q Consensus 212 ~~~~~~~~l~v 222 (386)
........|.|
T Consensus 245 ~~~g~gt~l~V 255 (256)
T 3juy_B 245 YTFGQGTKLER 255 (256)
T ss_dssp CEECCCEEEEE
T ss_pred ceEcCCEEEEE
Confidence 43333344443
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=161.89 Aligned_cols=182 Identities=16% Similarity=0.308 Sum_probs=119.3
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
..+...|....+.+|++|+|.|.+.+.+.+.+.|+|+........+............+++... ....+++|.|.+++
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~L~I~~v~ 82 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGS--GSGTDYSLTISNLE 82 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCC
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEe--CCCCEEEEEEccCC
Confidence 3455556677799999999999999888889999997543221111111111111113344332 23456789999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCC------------------eeecCCCceEEEeCCccEEEEEEeeeeC--C
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPP------------------VISDNSTRSLVVSEGQPVQLECFAGGHP--T 164 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~ 164 (386)
.+|+|.|+|.+.+...........|.|..++ ......+....+.+|++++|.|.+.+.+ .
T Consensus 83 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~ 162 (250)
T 3esu_F 83 QEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSS 162 (250)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGG
T ss_pred hhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccC
Confidence 9999999999987544434444567776531 1112223456788999999999998766 6
Q ss_pred CeEEEEEc--CeeeCCC-----------------CceEE------eeeEEEECCCCCCCCeEEEEEEec
Q psy8823 165 PRISWRRE--NNAILPT-----------------GGSIY------RGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 165 ~~v~W~~~--~~~~~~~-----------------~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
+.+.|+++ +..+... .+... ...+|.|.+++.+|+|.|+|.+.+
T Consensus 163 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 163 SWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp SEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 78999997 3322100 11111 123699999999999999999997
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=162.28 Aligned_cols=186 Identities=15% Similarity=0.217 Sum_probs=123.0
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
++.+...+....+.+|++++|.|.+.+.+ .+.+.|+|++.......+.............++.... ...+++|
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L 115 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTL 115 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec--CCCEEEE
Confidence 56677777888899999999999998776 3789999865322111111111000000123444432 3456689
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEec---CCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRR---PPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRREN 173 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~ 173 (386)
.|.+++.+|+|.|+|.+.+...........+.|.. +|.+....+... ...|+.++|.|.+.+.++ +.++|++++
T Consensus 116 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g 194 (254)
T 2c1o_A 116 KISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDG 194 (254)
T ss_dssp EESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEESS
T ss_pred EECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChh-hccCCcEEEEEEEecccCCCcEEEEEECC
Confidence 99999999999999999875443333344566653 444443222211 225779999999988543 469999999
Q ss_pred eeeCCC-----------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPT-----------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~-----------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+... +........|.|.++..+|+|.|+|.|.|....
T Consensus 195 ~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 244 (254)
T 2c1o_A 195 SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 244 (254)
T ss_dssp SEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred CcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence 887654 111223567999999999999999999997654
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=159.34 Aligned_cols=183 Identities=16% Similarity=0.259 Sum_probs=119.6
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCC-ceeEE---eccceeeecCCCcceEEEEE
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTG-SSLII---RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~L~i 100 (386)
.+...+ ...+.+|++|+|.|.+.+. +.+.+.|+|.........+..... ..... ..+|+.... ..++++|.|
T Consensus 3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I 79 (218)
T 3s96_B 3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLSI 79 (218)
T ss_dssp SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEEE
T ss_pred eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEEE
Confidence 444445 6779999999999999988 888999999543221111111111 00011 113444433 456779999
Q ss_pred cccCCCCCeEEEEEeEEccc----ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGIN----NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWR 170 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~ 170 (386)
.+++.+|+|.|+|.+.+..+ ......+.|.|. .+|.+....+.. ....|+.++|.|.+.+ .|.+ .++|+
T Consensus 80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~-~~~~~~~v~L~C~~~g~~p~~~~v~W~ 158 (218)
T 3s96_B 80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSS-EELKENKATLVCLISNFSPSGVTVAWK 158 (218)
T ss_dssp SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCc-ccccCCcEEEEEEECcccCCCeEEEEE
Confidence 99999999999999987653 233445677777 344443322211 2335788999999987 4666 89999
Q ss_pred EcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+++..+.... ........|.|.....+|+|.|+|.+.|..+.
T Consensus 159 k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~ 209 (218)
T 3s96_B 159 ANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDT 209 (218)
T ss_dssp ETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEE
T ss_pred ECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCc
Confidence 9998875421 11122345888888888999999999997654
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=158.64 Aligned_cols=182 Identities=19% Similarity=0.249 Sum_probs=117.1
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
.+...|....+.+|++|+|.|.+.+.+.+.+.|+|+........+...........+.|+.... ....++|.|.+++.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~ 80 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVET 80 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec--CCCEEEEEECCCCh
Confidence 4666677788999999999999988888889999965322111111111000000123444432 23567899999999
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEecCCe------------eecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEE
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRRPPV------------ISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRR 171 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~------------~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~ 171 (386)
+|+|.|+|.+.+.........+.|.|..+|. .....+....+.+|++++|.|.+.+.+ .+.+.|++
T Consensus 81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k 160 (242)
T 2znx_A 81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIR 160 (242)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEE
T ss_pred HHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEe
Confidence 9999999999865433333455677776542 111112223588999999999998765 47899999
Q ss_pred cC--eeeC------C----------CCceEE------eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 172 EN--NAIL------P----------TGGSIY------RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 172 ~~--~~~~------~----------~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
++ ..+. . ..+... ....|.|.+++.+|+|.|+|.+.|.
T Consensus 161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 53 2210 0 111111 1248999999999999999999874
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-21 Score=153.56 Aligned_cols=175 Identities=18% Similarity=0.269 Sum_probs=120.3
Q ss_pred CceEEEeCCccEEEEEEeeeeC---CCeEEEEEcC--eeeC-----------C-CCceEE----eeeEEEECCCCCCCCe
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP---TPRISWRREN--NAIL-----------P-TGGSIY----RGSILKIPQITKEDRG 200 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~---~~~v~W~~~~--~~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g 200 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|++++ ..+. . ..+... ....|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 4556788999999999998876 3689999863 2210 0 111111 1347999999999999
Q ss_pred EEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCcee
Q psy8823 201 TYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 201 ~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~ 274 (386)
.|+|.+.+..+........+.|. .+|.+...+.......|+.++|.|.+.|.+++ .+.|++++.. +......
T Consensus 87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~ 164 (212)
T 1q0x_L 87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTP--VTAGMET 164 (212)
T ss_dssp EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEE
T ss_pred EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEe--CCCCeec
Confidence 99999998765433344556663 46666654444445578899999999986443 8999999987 4433211
Q ss_pred E-EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 275 S-ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 275 ~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
. ............+.|.|.++..+|+|.|+|.|.|.....+.++
T Consensus 165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 165 TQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp CCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred CCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence 0 0111111222456799999999999999999999987655544
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=157.45 Aligned_cols=179 Identities=15% Similarity=0.184 Sum_probs=117.2
Q ss_pred ccceeeecCCcEEEEEEEeeCC---CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
|....+.+|++|+|.|.+.+.+ .+.+.|++++.......+.............++.... ..++++|.|.+++.+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D 84 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGAQTED 84 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCCCccC
Confidence 6777899999999999998766 3679999975321111111111000000123444332 3456699999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCc
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISWRRENNAILPTGG 181 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~ 181 (386)
+|.|+|.+.+..+........|.|. .+|.+....+.. .+..|+.++|.|.+.+.+++ .++|++++..+.....
T Consensus 85 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~ 163 (212)
T 1q0x_L 85 EAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSS-EELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGME 163 (212)
T ss_dssp CEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred CEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCH-HHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCee
Confidence 9999999987654333344566664 344443322211 13368899999999886543 8999999988754311
Q ss_pred ----------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 182 ----------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 182 ----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.......|.|.+...+|+|.|+|.|.|....
T Consensus 164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 164 TTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp ECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred cCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 1122356899999999999999999996543
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=157.27 Aligned_cols=181 Identities=16% Similarity=0.288 Sum_probs=119.6
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+...|....+.+|++|+|.|.+.+.+ .+.+.|+|+........+.............|+.... ....++|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIID 80 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEc
Confidence 455667778899999999999998777 6789999975322111111110000000123454432 3456689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC-----eeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC-
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP-----VISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRREN- 173 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-----~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~- 173 (386)
+++.+|+|.|+|.+.+..+........|.|..++ ......+....+.+|++++|.|.+.+.| .+.+.|+++.
T Consensus 81 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~ 160 (240)
T 1moe_A 81 PVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRP 160 (240)
T ss_dssp SCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred CCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECC
Confidence 9999999999999987644333455677777643 2222224456788999999999998876 3589999962
Q ss_pred -eeeC-----------------CCCceEEe------eeEEEECCCCCCCCeEEEEEEec
Q psy8823 174 -NAIL-----------------PTGGSIYR------GSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 174 -~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
.... ...+.... ...|.|.+++.+|+|.|+|.+.+
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 161 EQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp TSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred CCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 2110 00111111 24799999999999999999985
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=157.81 Aligned_cols=215 Identities=10% Similarity=0.060 Sum_probs=124.5
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC-----ceEEeeeEEEECCCCCCCCeEEEEEEe
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG-----GSIYRGSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
.+|.+...+ . ..+.+|++++|.|.+.+ +.+.+.|+|++..+.... ........|.|.+++.+|+|.|+|.+.
T Consensus 6 ~kP~i~~~P-~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 6 RKPSLLAHP-G-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCEECCBS-C-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCEEEEcC-C-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 345554332 2 46889999999999864 467899999987542111 011245679999999999999999997
Q ss_pred cCCC----CceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeee
Q psy8823 208 NGVG----KGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280 (386)
Q Consensus 208 ~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 280 (386)
+... ...+..+.|.|.. +|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|++..... ..... .
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~--~~~~~----~ 154 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHER--RFSAG----P 154 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEE--CCBCB----C
T ss_pred ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCc--ccccc----c
Confidence 6421 2245667777765 355554443 467899999999999775 468999999977322 11100 0
Q ss_pred ecCceeeeEEEEeecccCCCeEEEEEEEcCCC-----ceeeEEEEEEEecCCCCC-CCCCceeecCcceeeeEEecCCC-
Q psy8823 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLG-----TSEKTVELFESIIPVCPP-QTQPSELLPLRNVNMAVIFAEQP- 353 (386)
Q Consensus 281 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~p~~~~-~~~~~~~~~~~~~~~~c~~~~~p- 353 (386)
.........|.|.+++ |+|.|+|.|.|..+ ..+..+.|.|.+.|.... .+.......|..+.|.|......
T Consensus 155 ~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~~~~~~ 232 (257)
T 1b6u_A 155 KVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLI 232 (257)
T ss_dssp CSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------------------------
T ss_pred ccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEEcchHH
Confidence 0011136789999998 99999999997632 334568888888766431 11122344577788888765444
Q ss_pred -CCccccc
Q psy8823 354 -TSWEPQR 360 (386)
Q Consensus 354 -~~W~~~~ 360 (386)
+.|+...
T Consensus 233 ~~~~~~~~ 240 (257)
T 1b6u_A 233 SEEDLNLD 240 (257)
T ss_dssp --------
T ss_pred HHHHhhhh
Confidence 5676443
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=148.16 Aligned_cols=161 Identities=20% Similarity=0.387 Sum_probs=118.3
Q ss_pred eeeecCCcEEEEEEEeeCCCC--cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDY--PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
..+.+|++++|.|.+.+.+.+ .+.|++++..+... .. ......|.|. +.+|+|.|
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~--------------~~-------~~~~~~l~i~--~~~d~G~Y 64 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--------------AL-------PGQKTEFKVD--SDDQWGEY 64 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECT--------------TC-------CCSEEEEEEC--GGGCCEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecc--------------cc-------cCCcEEEEEe--chhhCeEE
Confidence 457899999999999876655 79999987543111 00 0113356666 68999999
Q ss_pred EEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeC-CCeEEEEE---cCeeeCCCC--c-eEE
Q psy8823 112 RCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-TPRISWRR---ENNAILPTG--G-SIY 184 (386)
Q Consensus 112 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~---~~~~~~~~~--~-~~~ 184 (386)
+|.+.+. ....+.|.|..+|.+.... ....+.+|+.+.|.|.+.+.| .+.+.|++ ++....... . ...
T Consensus 65 ~C~~~n~----~~~~~~l~V~~~P~~~~~~-~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~ 139 (184)
T 3b5h_A 65 SCVFLPE----PMGTANIQLHGPPRVKAVK-SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139 (184)
T ss_dssp EEEEEST----TSCEEEEEECCSCCCEESC-SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEE
T ss_pred EEEEECC----cCcEEEEEEecCCceeecC-CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEE
Confidence 9999862 2356788888888776554 456788999999999999999 79999999 555443221 1 111
Q ss_pred ----eeeEEEECCCC-CCCCeEEEEEEecCCCCceeeeEEEEEE
Q psy8823 185 ----RGSILKIPQIT-KEDRGTYYCVAENGVGKGTRRNIAVEVE 223 (386)
Q Consensus 185 ----~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 223 (386)
....|.|.+++ .+|.|.|+|.+.|..+. ....+.|.|.
T Consensus 140 ~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~ 182 (184)
T 3b5h_A 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRVR 182 (184)
T ss_dssp EEETTEEEEEECSCCTTTSSEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred EecCCeeEEEEeeccccccCceEEEEEEeCCCc-ceEEEEEEEe
Confidence 13489999999 99999999999999887 4455677664
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-22 Score=154.81 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=110.3
Q ss_pred eeeecCCcEEEEEEEee--CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 34 QIKDIGGTVELKCSVQY--AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
..+.+|++|+|.|.... .+.+.|.|+|++..+.. +..+......++++.+.. +++|.|.+++.+|+|.|
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~----~~~~~~~~~~~~r~~~~~-----~gsL~I~~v~~~D~G~Y 76 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAE----FKRKMKPFLKSGAFEILA-----NGDLKIKNLTRDDSGTY 76 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEE----EETTSCCEESSTTEEECT-----TSCEEESSCCGGGCEEE
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEE----EcCCCeecCCCCeEEECC-----CCcEEEcccccccCEEE
Confidence 45789999999995332 44567999998753311 111111122345555532 22699999999999999
Q ss_pred EEEeEEcccce-eeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEE
Q psy8823 112 RCQVIIGINNK-ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILK 190 (386)
Q Consensus 112 ~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~ 190 (386)
+|.+.+..+.. .+..+.|.|..++.. .. ....+..+.|.|.+.+.|.+.+.|++++..+.... .+.
T Consensus 77 ~C~~~n~~g~~~~~~~~~l~V~~~~~~-----p~-i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~-------~~~ 143 (176)
T 1hng_A 77 NVTVYSTNGTRILNKALDLRILEMVSK-----PM-IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKT 143 (176)
T ss_dssp EEEEEETTCCEEEEEEEEEEEECCCCC-----CE-EEEETTTTEEEEECSSCSSCEEEEEETTEEEEEES-------SSE
T ss_pred EEEEEeCCCCEEEEEEEEEEEeCCCCC-----CE-EEecCCcEEEEEEecCCCCcEEEEEECCEECCCCC-------cEE
Confidence 99999876554 466778888764321 11 22335569999999999999999999998764332 245
Q ss_pred ECCCCCCCCeEEEEEEecCCCC
Q psy8823 191 IPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 191 i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|.++..+|+|.|+|.|.|..+.
T Consensus 144 i~~~~~~d~G~Y~C~a~N~~g~ 165 (176)
T 1hng_A 144 MSYQWTNLRAPFKCKAVNRVSQ 165 (176)
T ss_dssp EEEECSCCSSCEEEEEEETTEE
T ss_pred EEEEEccCCeEEEEEEEecCCC
Confidence 5577899999999999999886
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=153.89 Aligned_cols=174 Identities=18% Similarity=0.301 Sum_probs=122.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eC--------C-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----IL--------P-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~--------~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|+.++|.|.+.+.+.+.+.|++.... +. . ..+... ....|.|.+++.+|+|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3r06_A 8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY 87 (213)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence 3456788999999999999888889999984311 00 0 111111 2347999999999999999
Q ss_pred EEEecCCCCceeeeEEEEE---EecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCc--eeEE
Q psy8823 204 CVAENGVGKGTRRNIAVEV---EFAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQ--HYSI 276 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~--~~~~ 276 (386)
|.+.+..+........+.| ..+|.+...+.......|+.++|.|.+.|.+++ .+.|++++.. +.... ....
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~ 165 (213)
T 3r06_A 88 CQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSE--KRDGVLQSVTD 165 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEE--ECTTEEEEECC
T ss_pred EecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcc--cCCceEeccCc
Confidence 9999876543445566777 567777766666666678889999999987653 8999999987 44321 1111
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
...........+.|.|.....+|+|.|+|.|.|........
T Consensus 166 ~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~ 206 (213)
T 3r06_A 166 QDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIV 206 (213)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEE
T ss_pred eeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceE
Confidence 11111222345678899999999999999999987654433
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=160.06 Aligned_cols=185 Identities=16% Similarity=0.356 Sum_probs=126.2
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
.+...|....+.+|++|+|.|.+.+.+.+.+.|+|.........+. ..........++++....+.....++|.|.+++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 84 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 84 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence 4555667778999999999999998888899999955332211111 112222233456777655566678899999999
Q ss_pred CCCCeEEEEEeEEcccc---eeeeEEEEEEec--------------------CCeeecCCCceEEEeCCccEEEEEEeee
Q psy8823 105 ETDAGYYRCQVIIGINN---KISAEVDLQVRR--------------------PPVISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
.+|+|.|+|.+.+..+. .....+.|.|.. +|.+. ..+....+.+|++++|.|.+.+
T Consensus 85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~ 163 (256)
T 3tf7_C 85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT-QSPRNKVTVTGENVTLSCRQTN 163 (256)
T ss_dssp GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE-ESCSEEEEETTCCEEECEEECS
T ss_pred cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE-ecCCEEEEeCCCcEEEEEEcCC
Confidence 99999999999875431 223345667664 23333 3345667889999999999977
Q ss_pred eCCCeEEEEEcCee--e--CC-------------CCce-----EEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 162 HPTPRISWRRENNA--I--LP-------------TGGS-----IYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 162 ~~~~~v~W~~~~~~--~--~~-------------~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
. .+.+.|++.... . .. ..+. ......|.|.+++.+|+|.|+|.+.|..+.
T Consensus 164 ~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 164 S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ 235 (256)
T ss_dssp C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence 6 678999984311 1 00 0000 012347999999999999999999986553
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=165.58 Aligned_cols=189 Identities=17% Similarity=0.243 Sum_probs=122.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCC-ceeE---EeccceeeecCCCcceEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STG-SSLI---IRDSRFAIRYDTASSTYT 97 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~-~~~~---~~~~~~~~~~~~~~~~~~ 97 (386)
..+.+...+....+.+|++|+|.|.+.+.+...+.|+|++.......+.. ... .... ...+|+.+..+ ..++++
T Consensus 23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~s 101 (279)
T 2wbj_D 23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLST 101 (279)
T ss_dssp CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-SSSEEE
T ss_pred ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-CCCEEE
Confidence 45667777888889999999999999877777899999763221111110 000 0000 01345555443 256779
Q ss_pred EEEcccCCCCCeEEEEEeEEccc-----ceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCC--
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGIN-----NKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPT-- 164 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-- 164 (386)
|.|.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+....+....+.+|+.++|.|.+.+.++
T Consensus 102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~ 181 (279)
T 2wbj_D 102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH 181 (279)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence 99999999999999999987321 1122335677764 3433322111112336889999999988744
Q ss_pred CeEEEEEcCeeeCCCC---------------ceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 165 PRISWRRENNAILPTG---------------GSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~---------------~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+.++|++++..+.... ........|.|.+....| .|.|+|.+.|....
T Consensus 182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred cEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence 6899999998764321 112234468888888765 67899999996544
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=156.23 Aligned_cols=173 Identities=20% Similarity=0.271 Sum_probs=118.9
Q ss_pred eEEEeCCccEEEEEEeeee-CCCeEEEEEcCe--e-------------eCCC---CceE----EeeeEEEECCCCCCCCe
Q psy8823 144 SLVVSEGQPVQLECFAGGH-PTPRISWRRENN--A-------------ILPT---GGSI----YRGSILKIPQITKEDRG 200 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~--~-------------~~~~---~~~~----~~~~~l~i~~~~~~d~g 200 (386)
.+.+.+|++++|.|.+.+. +.+.+.|++... . .... .+.. .....|.|.+++.+|+|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 88 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA 88 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence 6778999999999999888 888999998421 0 0000 0111 12356999999999999
Q ss_pred EEEEEEecCCC----CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeec
Q psy8823 201 TYYCVAENGVG----KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTN 270 (386)
Q Consensus 201 ~y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~ 270 (386)
.|+|.+.+..+ ........|.|. .+|.+...........|+.++|.|.+.| .|++ .+.|++++.. +..
T Consensus 89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~--l~~ 166 (218)
T 3s96_B 89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTP--ITQ 166 (218)
T ss_dssp EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE--C--
T ss_pred EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEE--CcC
Confidence 99999998765 123345677777 5566666555555566789999999998 5767 8999999987 332
Q ss_pred CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 271 NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
.................+.|.|.....+|+|.|+|.|.|..+..+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 167 GVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp ------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred ceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 111110000112222345688999999999999999999998776654
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=154.95 Aligned_cols=165 Identities=16% Similarity=0.260 Sum_probs=108.5
Q ss_pred ccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCc----eeEEec----cceeeecCCCcceEEEEEc
Q psy8823 31 SQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGS----SLIIRD----SRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~L~i~ 101 (386)
|....+.+|++|+|.|.+.+ .+...|.|++++..+. .+..+. .....+ +|+.+. .+++|.|.
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I~ 75 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLA----FIVPHETKSPEIHVTNPKQGKRLNFT-----QSYSLQLS 75 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEE----EEECCSSSCCEEEECCHHHHTTEEEC-----TTCCEEEC
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEE----EEecccCCCCceeecCccccccEEEC-----CCeEEEEC
Confidence 45667899999999999875 3446799999863221 011110 011112 233332 24589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCc-cEEEEEEeeee-CCCeEEEEEcCeeeCCC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ-PVQLECFAGGH-PTPRISWRRENNAILPT 179 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~-~v~l~C~~~~~-~~~~v~W~~~~~~~~~~ 179 (386)
+++.+|+|.|+|.+.+..+. ....+.|.|..++..+...........|. .++|.|.+.+. |.+.++|++++..+..
T Consensus 76 ~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~- 153 (193)
T 2if7_A 76 NLKMEDTGSYRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS- 153 (193)
T ss_dssp SCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES-
T ss_pred CCCcccCceEEEEEEecCCC-eEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC-
Confidence 99999999999999876543 34577888877653221111111233455 79999999885 5789999999876532
Q ss_pred CceEEeeeEEEECCCCCC-CCeEEEEEEecCCCC
Q psy8823 180 GGSIYRGSILKIPQITKE-DRGTYYCVAENGVGK 212 (386)
Q Consensus 180 ~~~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~ 212 (386)
+..|.|.....+ |+|.|+|.+.|..+.
T Consensus 154 ------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~ 181 (193)
T 2if7_A 154 ------QPNLTVSWDPRISSEQDYTCIAENAVSN 181 (193)
T ss_dssp ------SSEEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred ------CCeEEEEeccCcCCCCcEEEEEECCCCc
Confidence 234666544454 899999999998876
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=157.98 Aligned_cols=174 Identities=22% Similarity=0.343 Sum_probs=118.5
Q ss_pred eccceeeecCCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecC----------CCcceEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD----------TASSTYTL 98 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~L 98 (386)
.|....+.+|+++.|.|.+.+.+. +.+.|++++.......+. ........+..+.. . ..++.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~L 79 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLA-----SAEMQGSELQVTMHDTRGRSPPYQL-DSQGRL 79 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEE-----EEEEETTEEEEEECCCSCCSSCCEE-CTTCCE
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEE-----eccccCCcccccccccccccccccc-CCCceE
Confidence 355667899999999999998775 789999977543211111 00011111111111 0 112249
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeec--CCCceEEEeCCccE-EEEEEe-eeeCCCeEEEEEcCe
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISD--NSTRSLVVSEGQPV-QLECFA-GGHPTPRISWRRENN 174 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~~g~~v-~l~C~~-~~~~~~~v~W~~~~~ 174 (386)
.|.+++.+|+|.|+|.+.+......+..+.|.|..+|.... ..+....+.+|+.+ .|.|.+ .+.|.+.+.|++++.
T Consensus 80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~ 159 (231)
T 2pet_A 80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQ 159 (231)
T ss_dssp EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred EEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCc
Confidence 99999999999999999987645667888888887753221 12233345578887 999999 899999999999998
Q ss_pred eeCCCC----ceEEe-------------eeEEEECCCCCCCCeEEEEEEecC
Q psy8823 175 AILPTG----GSIYR-------------GSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 175 ~~~~~~----~~~~~-------------~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.+.... ..... ...|.|.....+|.|.|+|.|.|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 160 RLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp ECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred cCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 876554 11111 256888766666799999999995
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=155.04 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=114.9
Q ss_pred ccceeeecCCcEEEEEEEe-eCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQ-YAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~-~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
|....+.+|++|+|.|.+. +.+ .+.+.|+|++.......+.............++.... ..++++|.|.+++.+|+
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~ 84 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQTGDE 84 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCCcccC
Confidence 5667789999999999954 332 4679999965432111111111110000123444432 34567999999999999
Q ss_pred eEEEEEeEEccc-ceeeeEEEEEEe---cCCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeeeCCC-C-
Q psy8823 109 GYYRCQVIIGIN-NKISAEVDLQVR---RPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAILPT-G- 180 (386)
Q Consensus 109 G~Y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~-~- 180 (386)
|.|+|.+.+..+ ........|.|. .+|.+....+... ...|+.++|.|.+.+. |++ .++|+++|..+... .
T Consensus 85 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~ 163 (216)
T 2xzc_L 85 ADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE 163 (216)
T ss_dssp EEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred EEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChh-hccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeE
Confidence 999999987654 222334566665 3444433222111 2258899999999884 443 89999999876543 0
Q ss_pred ---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 181 ---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 181 ---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
......+.|.|.++..+|+|.|+|.+.|....
T Consensus 164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (216)
T 2xzc_L 164 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 204 (216)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred ecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence 11122347999999999999999999997654
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-21 Score=156.21 Aligned_cols=170 Identities=12% Similarity=0.143 Sum_probs=121.2
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCC---ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEEE
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAVE 221 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l~ 221 (386)
.+.+|++++|.|.+.+ +...+.|+|++..+.... ........|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.
T Consensus 17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~ 95 (242)
T 1p6f_A 17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 95 (242)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEE
Confidence 6889999999999864 456899999997753110 11123567999999999999999999875432 235567777
Q ss_pred EEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
|.. +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|++++..... ... .......|.|.+++.+
T Consensus 96 V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~----~~~-------~~~~~~~l~I~~v~~~ 162 (242)
T 1p6f_A 96 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRG-------YGKVQAEFPLGPVTTA 162 (242)
T ss_dssp EECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE----EEE-------ECSSEEEEEEEECCGG
T ss_pred eecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc----ccc-------CCCceEEEEeCCCccc
Confidence 764 56665443 3457899999999998654 459999999876322 110 0124678999999999
Q ss_pred CCeEEEEEEEcCC---CceeeEEEEEEEecCCCC
Q psy8823 299 QYGSYICRAANKL---GTSEKTVELFESIIPVCP 329 (386)
Q Consensus 299 d~G~Y~C~a~n~~---g~~~~~~~l~v~~~p~~~ 329 (386)
|+|.|+|.|.|.. ...+..+.|.|...+..|
T Consensus 163 d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P 196 (242)
T 1p6f_A 163 HRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT 196 (242)
T ss_dssp GCEEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred cCEEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence 9999999999874 234567888888755433
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=157.47 Aligned_cols=177 Identities=16% Similarity=0.273 Sum_probs=120.0
Q ss_pred EEEeCCccEEEEEEeeeeCC-----CeEEEEEcCeeeC-------------CCCceEE-------eeeEEEECCCCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGHPT-----PRISWRRENNAIL-------------PTGGSIY-------RGSILKIPQITKEDR 199 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~-------------~~~~~~~-------~~~~l~i~~~~~~d~ 199 (386)
+.+.+|++++|.|.+.+.+. +.+.|++++.... ...+... ....|.|.+++.+|+
T Consensus 5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~ 84 (222)
T 4i0k_A 5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE 84 (222)
T ss_dssp CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence 45778999999999987654 6799999874320 0111111 156799999999999
Q ss_pred eEEEEEEecCCCCceeeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeE
Q psy8823 200 GTYYCVAENGVGKGTRRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYS 275 (386)
Q Consensus 200 g~y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~ 275 (386)
|.|+|.+.+... .+..+.|.|..+ |.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|++++... +.......
T Consensus 85 G~Y~C~~~~~~~--~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~-~~~~~~~~ 160 (222)
T 4i0k_A 85 GSYTCFVSIQDF--DSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVP-LTGNVTTS 160 (222)
T ss_dssp SCEEEEEEECCC--CCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCB-CCSEEEEE
T ss_pred EEEEEEEEeCCC--ceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCcc-CCCCccee
Confidence 999999998532 234555666544 4444433 3456789999999999 88999999999854331 22211111
Q ss_pred EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecCCC
Q psy8823 276 ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIPVC 328 (386)
Q Consensus 276 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 328 (386)
.. .........|.|.++..+|.|.|+|.|.|..|....++.|.|...|..
T Consensus 161 --~~-~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 210 (222)
T 4i0k_A 161 --QM-ANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLT 210 (222)
T ss_dssp --EE-ECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC----
T ss_pred --EE-cCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccc
Confidence 11 111123456889999999999999999999999999999999877653
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-21 Score=153.69 Aligned_cols=172 Identities=18% Similarity=0.263 Sum_probs=123.5
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeC------------CCCceE----EeeeEEEECCCCCCCCeEEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRREN--NAIL------------PTGGSI----YRGSILKIPQITKEDRGTYYCV 205 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~----~~~~~l~i~~~~~~d~g~y~C~ 205 (386)
.+.+.+|++++|.|.+. +.+.+.|+++. .... ...+.. .....|.|.+++.+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 67788999999999998 78899999952 2110 011111 1245799999999999999999
Q ss_pred EecCCC-CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCCeeeeeecCceeEE-e
Q psy8823 206 AENGVG-KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKEDTQQVLTNNQHYSI-S 277 (386)
Q Consensus 206 ~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~~~-~ 277 (386)
+.+..+ ........|.|. .+|.+...+.......|+.++|.|.+.|.+ .+.+.|++++.. +........ .
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~--l~~~~~~~~~~ 164 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSP--VKAGVETTTPS 164 (211)
T ss_dssp EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEECCCE
T ss_pred EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCee--cCCCcccCCce
Confidence 999876 234556677777 577777666555555799999999999864 468999999987 433211110 1
Q ss_pred eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 278 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
..........+.|.|.++..+|+|.|+|.|.|..+..++++.
T Consensus 165 ~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 165 KQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp ECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred ECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 111122234567999999999999999999999987776654
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=155.88 Aligned_cols=196 Identities=18% Similarity=0.217 Sum_probs=125.3
Q ss_pred eeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccc-cccCCceeE---EeccceeeecCCCcceEEEEEcc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPL-PISTGSSLI---IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
..+....+.+|++|+|.|.+.+. +...+.|+|.........+ ......... ....|+....+.....++|.|.+
T Consensus 13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 92 (257)
T 3gkz_A 13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKS 92 (257)
T ss_dssp EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECC
Confidence 34566779999999999999874 4677999996432211111 011111110 01245666555556677999999
Q ss_pred cCCCCCeEEEEEeEEcc---cceeeeEEEEEEecC-------------CeeecCCCceEEEeCCccEEEEEEeeeeCCC-
Q psy8823 103 IQETDAGYYRCQVIIGI---NNKISAEVDLQVRRP-------------PVISDNSTRSLVVSEGQPVQLECFAGGHPTP- 165 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~~-------------p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~- 165 (386)
++.+|+|.|+|.+.+.. .......+.|.|..+ +......+....+.+|++++|.|.+.+.+.+
T Consensus 93 v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~ 172 (257)
T 3gkz_A 93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSS 172 (257)
T ss_dssp CCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGG
T ss_pred CChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccce
Confidence 99999999999998752 122334566777654 1222333556789999999999999887777
Q ss_pred eEEEEEcC--eeeC---C---------CCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 166 RISWRREN--NAIL---P---------TGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 166 ~v~W~~~~--~~~~---~---------~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
.+.|++.. .... . ..+... ....|.|.+++.+|+|.|+|.+.+........-..|.|..
T Consensus 173 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 173 HLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp GEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred EEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 89999842 2111 0 011111 2346999999999999999999875443333334555543
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-21 Score=154.83 Aligned_cols=194 Identities=18% Similarity=0.227 Sum_probs=120.2
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cccC-CceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIST-GSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+.+|++|+|.|.+.+.+ ...+.|+|++.......+ .... +..... ..+|+.+..+...++++|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (227)
T 1mju_H 6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS 85 (227)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence 35566789999999999998765 577999997632211111 1111 111111 1346665544445678999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeee
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAI 176 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~ 176 (386)
++.+|+|.|+|.+.+.........+.|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+ .++|++++..+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~ 164 (227)
T 1mju_H 86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS 164 (227)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred CCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence 9999999999999875322223345677764 2433322222 235679999999999886 666 89999998753
Q ss_pred CC--CC-----ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 177 LP--TG-----GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 177 ~~--~~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
.. .. +.....+.|.|.++..+| |.|+|.+.|.... ......+.+..+|
T Consensus 165 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~-~~~~~~~~~~~~p 219 (227)
T 1mju_H 165 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS-TKVDKKIEPRGPT 219 (227)
T ss_dssp TEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGT-EEEEEECCCCCC-
T ss_pred CcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCC-cceEEEeCCCCCC
Confidence 11 00 122235679999999888 9999999996554 3344444444444
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=159.20 Aligned_cols=181 Identities=15% Similarity=0.297 Sum_probs=116.5
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+...|....+.+|++|+|.|.+.+.+ .+.+.|+|+........+.............|+.... ....++|.|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I 80 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKI 80 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEE
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEE
Confidence 355567778899999999999998776 5789999965322111111110000000134454432 345678999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC-------------eeecCCCceEEEeCCccEEEEEEeeeeC--CC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP-------------VISDNSTRSLVVSEGQPVQLECFAGGHP--TP 165 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~ 165 (386)
.+++.+|+|.|+|.+.+.........+.|.|..++ ..... +....+.+|++++|.|.+.+.+ .+
T Consensus 81 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~ 159 (247)
T 1svz_A 81 SRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQ-SGPELKKPGETVKISCKATNYAFTDY 159 (247)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEE-CCCEEECTTCCEEEEEEEESSCGGGS
T ss_pred CCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeC-CCceeecCCCcEEEEEEEcCcccCCc
Confidence 99999999999999986543323344567776542 12222 2234588999999999998764 56
Q ss_pred eEEEEEcC--eee------CC-----------CCceEE------eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 166 RISWRREN--NAI------LP-----------TGGSIY------RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 166 ~v~W~~~~--~~~------~~-----------~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.+.|++++ ... .. ..+... ....|.|.+++.+|+|.|+|.+.|.
T Consensus 160 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 160 SMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp CEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 89999964 111 00 111111 1348999999999999999999984
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=154.49 Aligned_cols=177 Identities=18% Similarity=0.265 Sum_probs=121.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----e--------CC-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----I--------LP-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~--------~~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+++... + .. ..+... ....|.|.+++.+|+|.|+
T Consensus 31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 110 (237)
T 3sob_L 31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 110 (237)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence 3456788999999999998888889999984311 0 00 111111 2457999999999999999
Q ss_pred EEEecCCCCceeeeEEEEE---EecceEeeCCCcccccCCCcEEEEEEEEec-C-CCeeEEEeCCeeeeeecCc--eeEE
Q psy8823 204 CVAENGVGKGTRRNIAVEV---EFAPVITVPKPRLGQALQYDMDLECHVEAY-P-PPAIVWIKEDTQQVLTNNQ--HYSI 276 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~~~~~~~~~~~--~~~~ 276 (386)
|.+.+..+........+.| ..+|.+...........|+.++|.|.+.+. | .+.+.|++++.. +.... ....
T Consensus 111 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~--~~~~~~~~~~~ 188 (237)
T 3sob_L 111 CQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL--QSGNSQESVTE 188 (237)
T ss_dssp EEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE--CCSSEEEEECC
T ss_pred EeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCC--CCCceeecccc
Confidence 9998876543334445665 445666655555555568899999999884 4 479999999987 43321 1111
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
...........+.|.|..+..+|+|.|+|.|.|..........+
T Consensus 189 ~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 232 (237)
T 3sob_L 189 QDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 232 (237)
T ss_dssp CCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred cccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence 11111122335679999999999999999999998765544443
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=158.31 Aligned_cols=186 Identities=17% Similarity=0.248 Sum_probs=123.2
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccC--CceeEEe---ccceeeecCCCcceEEEEE
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIST--GSSLIIR---DSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~L~i 100 (386)
.+...+....+.+|++|+|.|.+.+.+.+.+.|+|.........+.... +...... .+|+....+ ..++++|.|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I 81 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTV 81 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE-ETTEEEEEE
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec-CCCEEEEEE
Confidence 3566677788999999999999998888899999954322211111111 1111111 145554432 245779999
Q ss_pred cccCCCCCeEEEEEeEEccc---ceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCCC--eEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGIN---NKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPTP--RISW 169 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~v~W 169 (386)
.+++.+|+|.|+|.+.+..+ ........|.|.. +|.+....+....+.+|+.++|.|.+.+.+++ .++|
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 161 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 161 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence 99999999999999976432 1233445677763 34433322333334568999999999887665 8999
Q ss_pred EEcCeeeCCC---------------CceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 170 RRENNAILPT---------------GGSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+++|..+... +........|.|.....+| .|.|+|.+.|....
T Consensus 162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~ 220 (246)
T 4dzb_B 162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 220 (246)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence 9999887542 1222223458888888888 99999999986544
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=151.64 Aligned_cols=175 Identities=15% Similarity=0.200 Sum_probs=123.1
Q ss_pred eEEEeCCccEEEEEEeeeeCCC---eEEEEEcCeeeCCC----------------C-----------ceEEeeeEEEECC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTP---RISWRRENNAILPT----------------G-----------GSIYRGSILKIPQ 193 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~----------------~-----------~~~~~~~~l~i~~ 193 (386)
.+.+..|++++|.|.+.+.+.+ .++|+|++..+... . .......+|.|.+
T Consensus 10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 4567899999999999877665 48999987543210 0 0011245799999
Q ss_pred CCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCc
Q psy8823 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQ 272 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~ 272 (386)
++.+|+|.|+|.+.+..+........+.+..+|.....+.......++.+.+.|.+ .+.|++.+.|++++.... ...
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~--~~~ 167 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEA--KDT 167 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEE--EEE
T ss_pred CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCcccc--CCc
Confidence 99999999999999877765556666777777766655555566677777777775 467778999999887622 111
Q ss_pred eeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 273 HYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 273 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
... ..........+.|.|.++..+|+|.|+|.|.|+.|....+..+.+
T Consensus 168 ~~~--~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 168 QEP--GIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL 215 (225)
T ss_dssp EEE--CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred ceE--EecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence 111 111122223567999999999999999999999987765554443
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-20 Score=147.90 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=110.6
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc-----eEEeeeEEEECCCCCCCCeEEEEEEecCC----CCcee
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-----SIYRGSILKIPQITKEDRGTYYCVAENGV----GKGTR 215 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~----~~~~~ 215 (386)
..+.+|++++|.|.+.+ +.+.+.|+|++..+..... .......|.|.+++.+|+|.|+|.+.+.. ....+
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s 95 (201)
T 1nkr_A 17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS 95 (201)
T ss_dssp SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence 45789999999999964 6779999999876532111 01245679999999999999999997642 12234
Q ss_pred eeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEE
Q psy8823 216 RNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRV 292 (386)
Q Consensus 216 ~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 292 (386)
..+.|.|.. +|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|++++.. +........ .........|.|
T Consensus 96 ~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~--~~~~~~~~~----~~~~~~~~~L~i 167 (201)
T 1nkr_A 96 DPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEA--HERRLPAGP----KVNGTFQADFPL 167 (201)
T ss_dssp CCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCS--SCEEEECEE----EETTEEEEEEEE
T ss_pred CCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcc--cCccccccc----ccCCceEEEEEe
Confidence 566777765 355554443 46789999999999875 5679999999876 221111100 011113678999
Q ss_pred eecccCCCeEEEEEEEcCC
Q psy8823 293 ITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~~ 311 (386)
.+++ |+|.|+|.|.+..
T Consensus 168 ~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 168 GPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp EECC--SCEEEEEEEEETT
T ss_pred CCcC--CCeeEEEEEEcCC
Confidence 9998 9999999999763
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-21 Score=154.24 Aligned_cols=191 Identities=19% Similarity=0.271 Sum_probs=125.2
Q ss_pred ccceeeecCCcEEEEEEEeeCCCC---cEEEEecCCccccccccccCCceeE-----Eeccc-----eeeecCCCcceEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLPISTGSSLI-----IRDSR-----FAIRYDTASSTYT 97 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~ 97 (386)
|+...+.+|++|+|.|.+.+.+.+ .|.|+|++........ ...... ....+ .........++++
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFH---PSFGVDFPNSQFSKDRLSFVRARPETNADLRDAT 84 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEE---TTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCC
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEe---cccceeeccccccccceeeeccccccccccCcEE
Confidence 345568899999999999876654 3899998765421100 000000 00111 1112233445678
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeee
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAI 176 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~ 176 (386)
|.|.+++.+|+|.|+|.+.+..+........+.+..+|....... ......++.+.+.|.+ .+.|++.+.|++++...
T Consensus 85 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~ 163 (225)
T 4fmk_A 85 LAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQ-EVTIGPQSVAVARCVSTGGRPPARITWISSLGGE 163 (225)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEEC-CBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCE
T ss_pred EEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeeccc-ceeecceeeeeeeeeecCCCCCCEEEEEECCccc
Confidence 999999999999999999887666666666677766665443222 2234556777777766 56788899999987654
Q ss_pred CCC-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-eeeeEEEEEEec
Q psy8823 177 LPT-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG-TRRNIAVEVEFA 225 (386)
Q Consensus 177 ~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~ 225 (386)
... .+.....+.|.|.++..+|+|.|+|.|.|..+.. ....+.|.|+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y~ 220 (225)
T 4fmk_A 164 AKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRYH 220 (225)
T ss_dssp EEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTTC
T ss_pred cCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEEC
Confidence 322 1222234579999999999999999999976653 455677777653
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=155.87 Aligned_cols=185 Identities=18% Similarity=0.310 Sum_probs=120.6
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCC------CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQ------DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
..+.+...|....+.+|++|+|.|.+.+.+ .+.+.|+|+........+...........+.|+.... ....+
T Consensus 4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~ 81 (264)
T 2gjj_A 4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG--SGTDF 81 (264)
T ss_dssp CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEE
T ss_pred cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec--CCCEE
Confidence 446677778888899999999999998766 5679999964321111111111000000134554432 24567
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC------------------eeecCCCceEEEeCCccEEEEEE
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP------------------VISDNSTRSLVVSEGQPVQLECF 158 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~~~~~~~~~~~~~g~~v~l~C~ 158 (386)
+|.|.+++.+|+|.|+|.+.+.........+.|.|..+| .+....+....+.+|++++|.|.
T Consensus 82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~ 161 (264)
T 2gjj_A 82 TLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCK 161 (264)
T ss_dssp EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEE
T ss_pred EEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEE
Confidence 999999999999999999986533223344567777653 11111122346889999999999
Q ss_pred eeeeCC--CeEEEEEcC--ee---eC---C-----------CCceEE------eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 159 AGGHPT--PRISWRREN--NA---IL---P-----------TGGSIY------RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 159 ~~~~~~--~~v~W~~~~--~~---~~---~-----------~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+.+.+. +.+.|+++. .. +. . ..+... ....|.|.+++.+|+|.|+|.+.|.
T Consensus 162 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 162 ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 987764 789999974 21 11 0 111111 1458999999999999999999985
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=149.34 Aligned_cols=182 Identities=18% Similarity=0.316 Sum_probs=121.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCC-ceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTG-SSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+.+|++|+|.|.+.+.+ ...+.|+|.........+. .... ..... ..+|+.+..+...++++|.|.+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (220)
T 2fbj_H 6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence 34567799999999999998654 5679999975332111111 1110 10111 1356666655456778999999
Q ss_pred cCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CC--CeEEEEEcC
Q psy8823 103 IQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT--PRISWRREN 173 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~--~~v~W~~~~ 173 (386)
++.+|+|.|.|.+.+.... .....+.|.|.. +|.+..... ..+.+|+.++|.|.+.+. |. +.++|++++
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~--~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~ 163 (220)
T 2fbj_H 86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTL--PPALSSDPVIIGCLIHDYFPSGTMNVTWGKSG 163 (220)
T ss_dssp CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECC--CSSSCCSSEEEEEEEEEEBSCCCEEEEESCCC
T ss_pred CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeec--ccccCCCcEEEEEEEEeEECCCcEEEEEecCC
Confidence 9999999999999875432 123345777764 233332211 124679999999999887 65 689999998
Q ss_pred eeeCC--------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 174 NAILP--------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 174 ~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
..+.. .+......+.|.|.+...+|.|.|+|.+.|..+..
T Consensus 164 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~ 211 (220)
T 2fbj_H 164 KDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV 211 (220)
T ss_dssp SSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred EecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence 65410 11122234469999999999999999999988763
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=157.77 Aligned_cols=179 Identities=17% Similarity=0.245 Sum_probs=122.6
Q ss_pred CceEEEeCCccEEEEEEee---eeCCCeEEEEEcCeeeCCC------------------CceEE------eeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAG---GHPTPRISWRRENNAILPT------------------GGSIY------RGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~---~~~~~~v~W~~~~~~~~~~------------------~~~~~------~~~~l~i~~~ 194 (386)
+..+.+.+|+.++|.|.+. +.+.+.+.|++++...... ..... .+..|.|.++
T Consensus 12 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 91 (268)
T 3mj6_A 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV 91 (268)
T ss_dssp CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSC
T ss_pred CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCC
Confidence 3456789999999999987 6667789999976432111 11111 1267999999
Q ss_pred CCCCCeEEEEEEecCCCCc-eeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE---EecCCCeeEEEeCCeeeeeec
Q psy8823 195 TKEDRGTYYCVAENGVGKG-TRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV---EAYPPPAIVWIKEDTQQVLTN 270 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~~~W~~~~~~~~~~~ 270 (386)
+.+|+|.|+|.+.+..+.. ....+.|.|. | ..+....+.+|+.++|.|.+ .+.|.+.+.|++++... ...
T Consensus 92 ~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~-~~~ 165 (268)
T 3mj6_A 92 QKADEGIYTCEIRLKNESMVMKKPVELWVL--P---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSH-TEE 165 (268)
T ss_dssp CGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C---CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTC-SSC
T ss_pred CHhHCEEEEEEEEecCCcceEEEEEEEEEe--c---cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCC-Ccc
Confidence 9999999999999865442 3445555553 1 13345667889999999999 56788899999953320 000
Q ss_pred CceeEE--------ee----------eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 271 NQHYSI--------SH----------FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 271 ~~~~~~--------~~----------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
...... .. ...........|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 239 (268)
T 3mj6_A 166 ETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239 (268)
T ss_dssp EEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred eeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCC
Confidence 000000 00 000001246789999999999999999999999999999999886544
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-21 Score=152.92 Aligned_cols=166 Identities=12% Similarity=0.173 Sum_probs=114.6
Q ss_pred EeCCccEEEEEEeeeeC----CCeEEEEEcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 147 VSEGQPVQLECFAGGHP----TPRISWRRENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+.+|++++|.|.+.+.+ ...+.|++++..+.... ........|.|.+++.+|+|.|+|.+.|..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 67899999999998874 24899999997664321 112234579999999999999999999987652
Q ss_pred -eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeee
Q psy8823 214 -TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 214 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
....+.+ .+..+|.+...+.......|+.+.|.|.+.|. |++ .+.|+++|.. +............+......+
T Consensus 95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~g~~~~~s 172 (207)
T 2vol_A 95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQP--AENYKNTQPIMDTDGSYFVYS 172 (207)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEE--CSCEEECCCEECTTSCEEEEE
T ss_pred ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEe--ccCcccCCceECCCCCEEEEE
Confidence 2233333 45667877655444444468999999999985 553 8999999987 332211111111112223345
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.|.|.....+|.|.|+|.|.|.....
T Consensus 173 ~l~i~~~~~~~~g~ytC~a~n~~l~~ 198 (207)
T 2vol_A 173 KLNVQKSNWEAGNTFTCSVLHEGLHN 198 (207)
T ss_dssp EEEEEHHHHSSCCEEEEEEECTTSGG
T ss_pred EEEECHHHcCCCCEEEEEEECCCCCC
Confidence 67787777889999999999997543
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=148.33 Aligned_cols=168 Identities=16% Similarity=0.271 Sum_probs=115.4
Q ss_pred eEEEeCCccEEEEEEee----eeCCCeEEEEEcCeeeCCC------------CceE---EeeeEEEECCCCCCCCeEEEE
Q psy8823 144 SLVVSEGQPVQLECFAG----GHPTPRISWRRENNAILPT------------GGSI---YRGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~----~~~~~~v~W~~~~~~~~~~------------~~~~---~~~~~l~i~~~~~~d~g~y~C 204 (386)
.+.+.+|++++|.|.+. +.+.+.+.|++++..+... .+.. .....|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 45788999999999985 3466789999998775210 0111 124589999999999999999
Q ss_pred EEecCCCCce----eeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEE
Q psy8823 205 VAENGVGKGT----RRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSI 276 (386)
Q Consensus 205 ~~~~~~~~~~----~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~ 276 (386)
.+.+..+... ...+.|.|..+ |.+... ....|+.+.|.|.+. |+|.|.+.|++++.. +...... .
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~--l~~~~~~-~ 155 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEE--LNAINTT-V 155 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCE--ECCSEEE-E
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEE--Cccccce-E
Confidence 9999765432 35667777665 333321 124588999999995 999999999999877 4432211 1
Q ss_pred eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 277 SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
.. ...........+..+..+|.|.|+|.|.|..|..++.+.+
T Consensus 156 ~~--~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 156 SQ--DPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EE--CTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred Ee--cCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 11 1110111222344556789999999999999998887765
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=157.36 Aligned_cols=195 Identities=21% Similarity=0.323 Sum_probs=122.5
Q ss_pred cceeeecCCcEEEEEEEeeCCC-----CcEEEEecCCccccccccccCCcee-EEeccceeeec-CCCcceEEEEEcccC
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQD-----YPVIWMKVDRNKVTEPLPISTGSSL-IIRDSRFAIRY-DTASSTYTLLVKDIQ 104 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~L~i~~~~ 104 (386)
++..+.+|++++|.|.+.+.+. ..+.|++++.... ......+... ....+++.+.. +...++++|.|.+++
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~--i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~ 80 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQL--VHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVR 80 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCE--EEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCC
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccE--EEEEcCCcccccceeCcEEEecccccCCeEEEEECCcc
Confidence 3456889999999999886643 5699999875431 1111111111 11123333322 123346689999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecC---CeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCC
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRP---PVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTG 180 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~ 180 (386)
.+|+|.|+|.+.+.. ..+..+.|.|..+ |.+.... ...+.+|+.++|.|.+ .+.|.+.+.|++++.......
T Consensus 81 ~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~ 156 (222)
T 4i0k_A 81 VTDEGSYTCFVSIQD--FDSAAVSLQVAAPYSKPSMTLEP--NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGN 156 (222)
T ss_dssp GGGCSCEEEEEEECC--CCCCCCCCCCCBCCCCCEEECCC-------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSE
T ss_pred cccCEEEEEEEEeCC--CceEEEEEEEEcCCCCCcEEeCC--CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCC
Confidence 999999999998753 2345556666654 3443322 2357789999999999 888999999999544333222
Q ss_pred ceE-E---e---eeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCC
Q psy8823 181 GSI-Y---R---GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233 (386)
Q Consensus 181 ~~~-~---~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~ 233 (386)
... . . ...|.|.+++.+|.|.|+|.+.|..+. ....+.|.|..+|....+..
T Consensus 157 ~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~ 215 (222)
T 4i0k_A 157 VTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQ-QDAHGSVTITGQPLTFPPET 215 (222)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTT-EEEEEEEECCC---------
T ss_pred cceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCC-CceEEEEEEeCCccccCCcc
Confidence 111 1 1 124789999999999999999999887 67788888888776544433
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-20 Score=149.72 Aligned_cols=176 Identities=17% Similarity=0.242 Sum_probs=116.8
Q ss_pred CceEEEeCCccEEEEEEe-eeeC-CCeEEEEEcCe--eeC-----------C-CCceEE----eeeEEEECCCCCCCCeE
Q psy8823 142 TRSLVVSEGQPVQLECFA-GGHP-TPRISWRRENN--AIL-----------P-TGGSIY----RGSILKIPQITKEDRGT 201 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~-~~~~-~~~v~W~~~~~--~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g~ 201 (386)
+..+.+.+|++++|.|.+ .+.+ .+.+.|++++. ... . ..+... ....|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 456778999999999995 4443 57899999642 110 0 111111 13479999999999999
Q ss_pred EEEEEecCCC-CceeeeEEEEEE---ecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeE
Q psy8823 202 YYCVAENGVG-KGTRRNIAVEVE---FAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYS 275 (386)
Q Consensus 202 y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~ 275 (386)
|+|.+.|..+ ........|.|. .+|.+....+......|+.++|.|.+.| .|++ .+.|++++.. +.......
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~--~~~~~~~~ 164 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL--QSGNSQES 164 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE--CCSSEEEE
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCee--cCCCeeEe
Confidence 9999999765 222234456664 4566665444333446889999999998 5554 8999999987 43331111
Q ss_pred E--eeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 276 I--SHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 276 ~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
. ...........+.|.|..+..+|+|.|+|.|.|..........
T Consensus 165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~ 210 (216)
T 2xzc_L 165 VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKS 210 (216)
T ss_dssp ECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEE
T ss_pred cCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEe
Confidence 1 1111111223558999999999999999999999866543333
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=156.97 Aligned_cols=173 Identities=19% Similarity=0.304 Sum_probs=118.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeC-----------C-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAIL-----------P-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-----------~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+++. ..+. . ..+... ....|.|.+++.+|+|.|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 45667899999999999988877789999853 2220 0 111111 2347999999999999999
Q ss_pred EEEecCCCC--ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCceeE
Q psy8823 204 CVAENGVGK--GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQHYS 275 (386)
Q Consensus 204 C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~ 275 (386)
|.+.|.... .......+.|. .+|.+...........|+.++|.|.+.|. |+ +.+.|++++.. +.......
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--~~~~~~~~ 163 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGAT--INDGVKTT 163 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEE--ECSSCBCC
T ss_pred EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeE--cCCCeecC
Confidence 999973221 11233455553 45666655555555679999999999987 54 69999999987 43322110
Q ss_pred -EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 276 -ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 276 -~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
....... ....+.|.|.++..+|+|.|+|.|.|..+..+.+
T Consensus 164 ~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 205 (212)
T 1nfd_E 164 KPSKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKS 205 (212)
T ss_dssp CCBCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCCC
T ss_pred CceecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceEEEE
Confidence 0001111 2235679999999999999999999998765443
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=155.91 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=114.5
Q ss_pred EeCCccEEEEEEeeee---CC-CeEEEEEcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 147 VSEGQPVQLECFAGGH---PT-PRISWRRENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~---~~-~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+.+|++++|.|.+.+. |+ +.++|+|++..+.... ........|.|.+++.+|+|.|+|.+.|..+..
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence 5689999999999887 33 6899999997764321 112234579999999999999999999976642
Q ss_pred -eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeee
Q psy8823 214 -TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 214 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
....+.+ .+..+|.+...+.......|+.++|.|.+.| +|++ .+.|++++.. +............+......+
T Consensus 103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--~~~~~~~~~~~~~~gt~~~~s 180 (218)
T 2rgs_A 103 PIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHT--EENYKDTAPVLDSDGSYFIYS 180 (218)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEE--ECCEEECCCEECTTSCEEEEE
T ss_pred cceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEe--ccCceecccEECCCCCEEEEE
Confidence 2233322 4556777765444433346999999999998 5766 8999999987 332211111111112222345
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
.|.|.....+|.|.|+|.|.|......
T Consensus 181 ~l~v~~~~~~d~g~YtC~a~n~~l~~~ 207 (218)
T 2rgs_A 181 KLNMKTSKWEKTDSFSCNVRHEGLKNY 207 (218)
T ss_dssp EEEEEHHHHHHCSCEEEEEECTTSGGG
T ss_pred EEEECHHHcCCCCeEEEEEEcCCCCCc
Confidence 577777777789999999999876543
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=157.98 Aligned_cols=179 Identities=17% Similarity=0.223 Sum_probs=117.5
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
|....+.+|++|+|.|.+.+.+.+.+.|+|+........+.............++.... ...+.+|.|.+++.+|+|.
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~ 83 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEAA 83 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCSE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe--eCCEEEEEECcCCcccCEE
Confidence 66677999999999999877766779999965322111111111000000123444332 3356689999999999999
Q ss_pred EEEEeEEcccc--eeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcCeeeCCCCce
Q psy8823 111 YRCQVIIGINN--KISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRRENNAILPTGGS 182 (386)
Q Consensus 111 Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~ 182 (386)
|+|.+.+.... .......|.|. .+|.+....+.. .+.+|+.++|.|.+.+. |+ +.++|++++..+......
T Consensus 84 Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 162 (212)
T 1nfd_E 84 YYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSP-EELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKT 162 (212)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCH-HHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC
T ss_pred EEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCch-HhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeec
Confidence 99999862221 22334456663 345444332221 23468999999999887 44 699999999887543210
Q ss_pred ---------EEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 183 ---------IYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 183 ---------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
....+.|.|.++..+|+|.|+|.|.|....
T Consensus 163 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 163 TKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp CCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred CCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 222456899999999999999999997654
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=151.14 Aligned_cols=173 Identities=17% Similarity=0.326 Sum_probs=116.6
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC------C-----------CCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL------P-----------TGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~-----------~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++++ ..+. . ..+... ....|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (219)
T 1c1e_H 8 GPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLK 87 (219)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCC
T ss_pred CCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCC
Confidence 345688999999999998764 6789999973 3221 0 011111 13589999999
Q ss_pred CCCCeEEEEEEecCCCC---ceeeeEEEEEEec----ceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeee
Q psy8823 196 KEDRGTYYCVAENGVGK---GTRRNIAVEVEFA----PVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQ 266 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~ 266 (386)
.+|+|.|+|.+.+..+. .......|.|... |.+....+...+.+|+.++|.|.+.| +|.| .+.|++++..+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~ 167 (219)
T 1c1e_H 88 NEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS 167 (219)
T ss_dssp GGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred cccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCccc
Confidence 99999999999987632 1223456666553 55554444445678999999999998 8998 99999998752
Q ss_pred eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 267 VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
........ . ........+.|.|..... |.|.|+|.|.|..|.......|
T Consensus 168 ~~~~~~~~--~--~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i 216 (219)
T 1c1e_H 168 GVHTFPAV--L--QSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI 216 (219)
T ss_dssp TEEECCCE--E--SSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred ceEecCCc--c--cCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence 11111100 0 011222356788854444 5599999999999887665554
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-21 Score=159.15 Aligned_cols=188 Identities=16% Similarity=0.257 Sum_probs=121.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEec----cceeeecCCCcceEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L 98 (386)
....+...+....+.+|++|+|.|.+.+ +...+.|+|.........+............ +|+.... ...++++|
T Consensus 26 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL 103 (270)
T 3qib_D 26 GGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAEC-PSNSPCSL 103 (270)
T ss_dssp --CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEEC-CTTSCEEE
T ss_pred cceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEe-CCCcEEEE
Confidence 3456667777788999999999999864 6678999995433211111111111111111 1555544 23567899
Q ss_pred EEcccCCCCCeEEEEEeEEcc---cceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eE
Q psy8823 99 LVKDIQETDAGYYRCQVIIGI---NNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RI 167 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v 167 (386)
.|.+++.+|+|.|+|.+.+.. .......+.|.|.. +|.+....+....+..|+.++|.|.+.+ .|.+ .+
T Consensus 104 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v 183 (270)
T 3qib_D 104 EIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 183 (270)
T ss_dssp EESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred EECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEE
Confidence 999999999999999998532 12233445677765 3433322222222345899999999988 5555 79
Q ss_pred EEEEcCeeeCCCC---------------ceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 168 SWRRENNAILPTG---------------GSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 168 ~W~~~~~~~~~~~---------------~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+|+++|..+.... ........|.|.+...+| +|.|+|.+.|....
T Consensus 184 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~ 244 (270)
T 3qib_D 184 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 244 (270)
T ss_dssp EEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred EEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCC
Confidence 9999998875421 222234567888887777 99999999986543
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-20 Score=154.53 Aligned_cols=185 Identities=16% Similarity=0.308 Sum_probs=116.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCC-----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQ-----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (386)
..+.+...|....+.+|++|+|.|.+.+.+ ...+.|+++........+...........+.|+.... ...+++
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~ 91 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG--SGTDFT 91 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc--CCCEEE
Confidence 345677777788899999999999998765 4779999975322111111111000000134554432 235679
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe----------------------eecCCCceEEEeCCccEEE
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV----------------------ISDNSTRSLVVSEGQPVQL 155 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~----------------------~~~~~~~~~~~~~g~~v~l 155 (386)
|.|.+++.+|+|.|+|.+.+...........|.|..++. +....+....+.+|++++|
T Consensus 92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L 171 (268)
T 1x9q_A 92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL 171 (268)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEE
Confidence 999999999999999999865332223344566654321 0111123457889999999
Q ss_pred EEEeeeeCC--CeEEEEEcC--eeeC-------------------CCCceEEe------eeEEEECCCCCCCCeEEEEEE
Q psy8823 156 ECFAGGHPT--PRISWRREN--NAIL-------------------PTGGSIYR------GSILKIPQITKEDRGTYYCVA 206 (386)
Q Consensus 156 ~C~~~~~~~--~~v~W~~~~--~~~~-------------------~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~ 206 (386)
.|.+.+.++ +.+.|+++. .... ........ ...|.|.+++.+|+|.|+|.+
T Consensus 172 ~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 251 (268)
T 1x9q_A 172 SCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTG 251 (268)
T ss_dssp EEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence 999987653 789999853 2210 01111111 257999999999999999999
Q ss_pred ecC
Q psy8823 207 ENG 209 (386)
Q Consensus 207 ~~~ 209 (386)
.+.
T Consensus 252 ~~~ 254 (268)
T 1x9q_A 252 ASY 254 (268)
T ss_dssp EET
T ss_pred ccC
Confidence 874
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=155.04 Aligned_cols=154 Identities=19% Similarity=0.277 Sum_probs=107.6
Q ss_pred EeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEe--
Q psy8823 147 VSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEF-- 224 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~-- 224 (386)
+.+|++++|.|.+ |.+.++|+|+|..+... ...+..|.|.+++.+|+|.|+|.+.+... ..+.+.+..
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s----~~~~v~v~~~~ 84 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGSQNKS----KPLQVYYRMGS 84 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE---ESSCCCEEEEEGGGCCEEEEEEESSSSCC----CCEEEEEEC--
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC---CCCCCeEEeCCCCcCCCEEEEEEecCCCC----eeEEEEEEEec
Confidence 3579999999998 77899999999877432 11346799999999999999999765322 234444430
Q ss_pred -----------------------------cceEeeCCCccccc-CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCcee
Q psy8823 225 -----------------------------APVITVPKPRLGQA-LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY 274 (386)
Q Consensus 225 -----------------------------~p~~~~~~~~~~~~-~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~ 274 (386)
++.+.. .+ ..+. +|++++|.|. |.|.|.+.|++++..+........
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~ 160 (204)
T 1sy6_A 85 ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ-TP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKN 160 (204)
T ss_dssp ----------------------------------C-CC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTT
T ss_pred cccccccccccccccccccccccccccccccceec-CC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCce
Confidence 111111 11 2233 8999999999 888899999999987322111111
Q ss_pred EEeeeeecCceeeeEEEEeec-ccCCCeEEEEEEEcCCCce-eeEEEEEE
Q psy8823 275 SISHFATADEFTDTTIRVITI-EKRQYGSYICRAANKLGTS-EKTVELFE 322 (386)
Q Consensus 275 ~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 322 (386)
.. ...+.|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.+
T Consensus 161 ~~--------~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 161 IG--------SDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp EE--------EETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred Ee--------cCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 10 13678999999 9999999999999999963 45555554
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-20 Score=152.98 Aligned_cols=172 Identities=20% Similarity=0.306 Sum_probs=116.9
Q ss_pred CceEEEeCCccEEEEEEeeeeC-----CCeEEEEEcCe--ee---C--------C-CCceEE----eeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-----TPRISWRRENN--AI---L--------P-TGGSIY----RGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~~--~~---~--------~-~~~~~~----~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|++++. .. . . ..+... ....|.|.+++.+|
T Consensus 41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 120 (252)
T 3bkj_L 41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED 120 (252)
T ss_dssp CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence 3456788999999999998877 57899999652 10 0 0 111111 12379999999999
Q ss_pred CeEEEEEEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCce
Q psy8823 199 RGTYYCVAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 199 ~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~ 273 (386)
+|.|+|.+.+..+........+.|.. +|.+...+.......|+.++|.|.+.|. |++ .+.|++++.. +.....
T Consensus 121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--~~~~~~ 198 (252)
T 3bkj_L 121 LGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVL 198 (252)
T ss_dssp CEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE--ECSSEE
T ss_pred CEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCee--cCCCee
Confidence 99999999987553233334566653 4666654444444578999999999984 544 7999999987 433311
Q ss_pred eEEee--eeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 274 YSISH--FATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 274 ~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
..... .........+.|.|.++..+|+|.|+|.|.|......
T Consensus 199 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p 242 (252)
T 3bkj_L 199 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP 242 (252)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred eecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCC
Confidence 11111 1111122456799999999999999999999876543
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=151.93 Aligned_cols=145 Identities=21% Similarity=0.350 Sum_probs=103.3
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc-cCCCCCeEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD-IQETDAGYYR 112 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~ 112 (386)
.++.+|++++|.|.+.+ ...|.|+|++..+... .+.+|.|.+ ++.+|+|.|+
T Consensus 9 ~v~~~G~~v~L~C~~~~--~~~i~W~k~g~~l~~~-------------------------~~~~L~I~~~~~~~D~G~Y~ 61 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS--DENLKWEKNGQELPQK-------------------------HDKHLVLQDFSEVEDSGYYV 61 (186)
T ss_dssp EEEEETTEEEEECSSCC--CTTCEEEETTEEECSC-------------------------CCSEEEEESCCTTTSCEEEE
T ss_pred EEEeCCcEEEEEEeCCC--CCceEEEECCEECCCC-------------------------CCCEEEECCCCccccCEEEE
Confidence 34578999999999976 3359999988654110 112799999 9999999999
Q ss_pred EEeEEcccceeeeEEEEEEec--CCeee-------------------cCCCce---EEEeCCccEEEEEEeeeeCCCeEE
Q psy8823 113 CQVIIGINNKISAEVDLQVRR--PPVIS-------------------DNSTRS---LVVSEGQPVQLECFAGGHPTPRIS 168 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v~~--~p~~~-------------------~~~~~~---~~~~~g~~v~l~C~~~~~~~~~v~ 168 (386)
|.+.|..+. .+..+.+.|.. ++... ...... ..+.+|+.+.|.|.+ |.+.++
T Consensus 62 C~a~n~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~ 137 (186)
T 1jbj_A 62 CYTPASNKN-TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIK 137 (186)
T ss_dssp EECSSCCCC-CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEE
T ss_pred EEEEeCCCc-EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEE
Confidence 999876444 33333333322 22100 000001 123489999999988 788999
Q ss_pred EEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 169 WRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 169 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|+|++..+..... ....|.|.++..+|+|.|+|.|.|..+.
T Consensus 138 W~k~g~~i~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 178 (186)
T 1jbj_A 138 WLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKETSN 178 (186)
T ss_dssp EEETTEECCCSSC---CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred EEECCEECcccCC---CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence 9999998764332 4667999999999999999999998765
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=155.13 Aligned_cols=184 Identities=16% Similarity=0.294 Sum_probs=109.2
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-c-CCceeEEe---ccceeeecCCCcceEEEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-S-TGSSLIIR---DSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~-~~~~~~~~---~~~~~~~~~~~~~~~~L~ 99 (386)
|.+...+....+.+|++|+|.|.+.+.+.+.+.|+|.........+.. . ........ ..++....+.....++|.
T Consensus 3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (259)
T 3omz_A 3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI 82 (259)
T ss_dssp --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence 456666778889999999999999888878899999543221111111 1 01100011 112222233445566899
Q ss_pred EcccCCCCCeEEEEEeEEcccc--eeeeEEEEEEecCC----------------eeecCCCceEEEeCCccEEEEEEeee
Q psy8823 100 VKDIQETDAGYYRCQVIIGINN--KISAEVDLQVRRPP----------------VISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~p----------------~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
|.+++.+|+|.|+|.+.+..+. .......|.|..++ ......+..+.+.+|++++|.|.+.+
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 162 (259)
T 3omz_A 83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYET 162 (259)
T ss_dssp ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence 9999999999999999875432 33445667776531 12233455678999999999998876
Q ss_pred e-CCCeEEEEEcCe--eeCC------------CCceEE------eeeEEEECCCCCCCCeEEEEEEec
Q psy8823 162 H-PTPRISWRRENN--AILP------------TGGSIY------RGSILKIPQITKEDRGTYYCVAEN 208 (386)
Q Consensus 162 ~-~~~~v~W~~~~~--~~~~------------~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~ 208 (386)
. +.+.+.|++.+. .... ..+... ....|.|.+++.+|+|.|+|.+.+
T Consensus 163 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 163 SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 4 778999998542 1100 001111 134699999999999999999975
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-20 Score=151.04 Aligned_cols=181 Identities=19% Similarity=0.300 Sum_probs=116.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cccC-CceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIST-GSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++++|.|.+.+.+ .+.+.|+|++.......+ .... +..... ..+|+.+..+...++++|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 45666789999999999998764 577999997522111101 1110 010100 1345555444345577999999
Q ss_pred cCCCCCeEEEEEeEEcccc---eeeeEEEEEEecC----CeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcC
Q psy8823 103 IQETDAGYYRCQVIIGINN---KISAEVDLQVRRP----PVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRREN 173 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~ 173 (386)
++.+|+|.|+|.+.+..+. .....+.|.|... |.+....+. ..+.+|+.++|.|.+.+ .|.+ .++|++++
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 164 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCC-SSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCc-cccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence 9999999999999976421 2234566777653 333322111 12457999999999988 7888 99999998
Q ss_pred eeeCCC-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPT-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+... .......+.|.|..... |+|.|+|.|.|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~ 209 (219)
T 1c1e_H 165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASS 209 (219)
T ss_dssp BCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGT
T ss_pred cccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCC
Confidence 753110 01112345688855444 669999999997665
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=147.42 Aligned_cols=181 Identities=20% Similarity=0.318 Sum_probs=118.9
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCC-ceeEE---eccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTG-SSLII---RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++|+|.|.+.+.+ ...+.|+|+........+. ...+ ..... .++|+.+..+...++++|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 4567799999999999998654 3679999975322111111 1111 10111 13566665554556789999999
Q ss_pred CCCCCeEEEEEeEEccc---c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEE-
Q psy8823 104 QETDAGYYRCQVIIGIN---N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRR- 171 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~- 171 (386)
+.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |.+ .++|++
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 165 (223)
T 1dee_B 87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCE-NSNPSSTVAVGCLAQDFLPDSITFSWKYK 165 (223)
T ss_dssp CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTT-CCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCc-ccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence 99999999999986531 1 122345777763 33333211111 24579999999999887 666 899999
Q ss_pred cCeeeCCC--------CceEEeeeEEEECCCCC--CCCeEEEEEEecCCCC
Q psy8823 172 ENNAILPT--------GGSIYRGSILKIPQITK--EDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~~--------~~~~~~~~~l~i~~~~~--~d~g~y~C~~~~~~~~ 212 (386)
+|..+... .......+.|.|..... +|.|.|+|.+.|..+.
T Consensus 166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~ 216 (223)
T 1dee_B 166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN 216 (223)
T ss_dssp TSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred CCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence 88766430 11222345688888876 7899999999998876
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=152.82 Aligned_cols=181 Identities=20% Similarity=0.290 Sum_probs=118.1
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCc---eeEE---eccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGS---SLII---RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~---~~~~---~~~~~~~~~~~~~~~~~L~i 100 (386)
.+....+.+|++++|.|.+.+.+ ...+.|+|+........+. ..... .... ..+|+.+..+...++++|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (222)
T 1q9r_B 6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM 85 (222)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence 34566789999999999998754 5679999965332111110 10000 0000 13456555444456789999
Q ss_pred cccCCCCCeEEEEEeEEcccc----eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINN----KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWR 170 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~ 170 (386)
.+++.+|+|.|+|.+.+..+. .......|.|.. +|.+....+.. .+.+|+.++|.|.+.|. |.+ .++|+
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~ 164 (222)
T 1q9r_B 86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWN 164 (222)
T ss_dssp CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCS-CCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccc-cccCCCcEEEEEEEccEECCCCEEEEe
Confidence 999999999999999865421 222345666654 33333221111 24579999999999886 777 99999
Q ss_pred EcCeeeCCC-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILPT-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+++..+... .+.....+.|.|.++..+| |.|+|.+.|..+.
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~ 212 (222)
T 1q9r_B 165 SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 212 (222)
T ss_dssp GGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred cCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCC
Confidence 998654221 1112224578999999999 9999999998775
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=154.48 Aligned_cols=178 Identities=20% Similarity=0.264 Sum_probs=114.1
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
+....+.+|++|+|.|.+.+. +.+.+.|+|+........+....+.......+++.... ....++|.|.+++.+|+
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~Ds 86 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK--SGTSASLAITGLQSEDE 86 (256)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc--cCCEEEEEECCCChhhC
Confidence 445678999999999999876 67789999965332211111111111111234554432 23567899999999999
Q ss_pred eEEEEEeEEcccc--eeeeEEEEEEecCCee-------------------ecCCCceEEEeCCccEEEEEEeeeeC--CC
Q psy8823 109 GYYRCQVIIGINN--KISAEVDLQVRRPPVI-------------------SDNSTRSLVVSEGQPVQLECFAGGHP--TP 165 (386)
Q Consensus 109 G~Y~C~~~~~~~~--~~~~~~~l~v~~~p~~-------------------~~~~~~~~~~~~g~~v~l~C~~~~~~--~~ 165 (386)
|.|+|.+.+..+. .....+.|.|..++.. ....+....+.+|++++|.|.+.+.+ .+
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 166 (256)
T 3ux9_B 87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY 166 (256)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence 9999999875332 2334566777655411 11112334588999999999998766 67
Q ss_pred eEEEEEcC--eee------CCCC-----------ceEE------eeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 166 RISWRREN--NAI------LPTG-----------GSIY------RGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 166 ~v~W~~~~--~~~------~~~~-----------~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
.+.|+++. ..+ .... +... ....|.|.+++.+|+|.|+|.+.|..
T Consensus 167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 89999873 221 0000 1111 13359999999999999999999864
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=152.66 Aligned_cols=185 Identities=18% Similarity=0.254 Sum_probs=119.9
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEe---ccceeeecCCCcceEEEEEcc
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR---DSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+...+....+.+|++|+|.|.+.+ +...+.|+|.........+....+...... .+|+....+ ..++++|.|.+
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~ 81 (240)
T 3q5y_A 4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSA 81 (240)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECS
T ss_pred ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECc
Confidence 3556667778999999999999874 667899999543322111111111111111 245555443 35678999999
Q ss_pred cCCCCCeEEEEEeEE--cccceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEc
Q psy8823 103 IQETDAGYYRCQVII--GINNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRE 172 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~--~~~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~ 172 (386)
++.+|+|.|+|.+.+ ...........|.|.. +|.+....+....+.+|+.++|.|.+.+ .|.+ .+.|+++
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~ 161 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 161 (240)
T ss_dssp CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence 999999999999973 2222334445666652 3433332222223446899999999988 4545 7999999
Q ss_pred CeeeCCCCce-----------EEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 173 NNAILPTGGS-----------IYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 173 ~~~~~~~~~~-----------~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
|..+...... ....+.|.|.+...+| .|.|+|.+.|....
T Consensus 162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 9887543211 1123458899988888 67999999986543
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=144.32 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=111.2
Q ss_pred CceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeC---CCC---------------ce-EEeeeEEEECCCCCCCCeE
Q psy8823 142 TRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAIL---PTG---------------GS-IYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---~~~---------------~~-~~~~~~l~i~~~~~~d~g~ 201 (386)
+..+.+.+|++++|.|.+.+ .+.+.+.|++++..+. ... +. ...+..|.|.+++.+|+|.
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~ 84 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS 84 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence 45667889999999999865 4456899999876442 100 00 1124679999999999999
Q ss_pred EEEEEecCCCCceeeeEEEEEEecce---EeeCCCcccccCCC-cEEEEEEEEec-CCCeeEEEeCCeeeeeecCceeEE
Q psy8823 202 YYCVAENGVGKGTRRNIAVEVEFAPV---ITVPKPRLGQALQY-DMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSI 276 (386)
Q Consensus 202 y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~-~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~ 276 (386)
|+|.+.+..+. ....+.|.|..++. +.... .....|. .++|.|.+.|. |.|.+.|++++.. +..
T Consensus 85 Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~--l~~------ 153 (193)
T 2if7_A 85 YRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNT--LSS------ 153 (193)
T ss_dssp EEEEEECSSCE-EEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEE--EES------
T ss_pred EEEEEEecCCC-eEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEE--cCC------
Confidence 99999998775 34577888876542 33222 1223455 89999999985 4789999999875 321
Q ss_pred eeeeecCceeeeEEEEeecccC-CCeEEEEEEEcCCCceeeEEE
Q psy8823 277 SHFATADEFTDTTIRVITIEKR-QYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 277 ~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
...|.|.....+ |.|.|+|.|.|..|..+..+.
T Consensus 154 ----------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 154 ----------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS 187 (193)
T ss_dssp ----------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred ----------CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence 234666554554 899999999999998866543
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-20 Score=153.28 Aligned_cols=186 Identities=19% Similarity=0.271 Sum_probs=121.2
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEec----cceeeecCCCcceEEEEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i 100 (386)
+.+...+....+.+|++|+|.| ..+.+...+.|+|.........+....+......+ +|+....+ ..++++|.|
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I 80 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP-DGSYFTLKI 80 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC-TTSCEEEEE
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec-cCceEEEEE
Confidence 3456667778899999999999 55567788999994332211111111111111111 56665543 356789999
Q ss_pred cccCCCCCeEEEEEeEEcc---cceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeeeCC-C-eEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGI---NNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGHPT-P-RISW 169 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~-~v~W 169 (386)
.+++.+|+|.|+|.+.+.. .........|.|.. +|.+....+....+.+|+.++|.|.+.+.++ + .+.|
T Consensus 81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W 160 (245)
T 4ei6_B 81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (245)
T ss_dssp CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence 9999999999999998532 22334455677763 4443332222223456899999999988544 4 8999
Q ss_pred EEcCeeeCCC---------------CceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 170 RRENNAILPT---------------GGSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
+++|..+... +........|.|.....+| .|.|+|.+.|....
T Consensus 161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 9999887542 1222234568888888888 89999999986543
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-21 Score=158.13 Aligned_cols=169 Identities=18% Similarity=0.308 Sum_probs=96.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee-----------CC-CCc----eEEeeeEEEECCCCCCCCeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI-----------LP-TGG----SIYRGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~-----------~~-~~~----~~~~~~~l~i~~~~~~d~g~y~C 204 (386)
..+.+.+|++++|.|.+.+.+.+.+.|++++. .. .. ..+ .......|.|.+++.+|+|.|.|
T Consensus 31 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C 110 (233)
T 3bqu_C 31 ASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYC 110 (233)
T ss_dssp SBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEE
T ss_pred CeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEE
Confidence 34567899999999999888878899998642 11 00 001 11223479999999999999999
Q ss_pred EEecCCCCceeeeEEEEEEe---cceEeeCCCcccccCCCcEEEEEEEEecC-CC-eeEEEeCCeeeeeecCceeEEe--
Q psy8823 205 VAENGVGKGTRRNIAVEVEF---APVITVPKPRLGQALQYDMDLECHVEAYP-PP-AIVWIKEDTQQVLTNNQHYSIS-- 277 (386)
Q Consensus 205 ~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~~-~~~W~~~~~~~~~~~~~~~~~~-- 277 (386)
.+.+..+........+.|.. +|.+...++......|+.++|.|.+.|.+ ++ .+.|++++.. +.........
T Consensus 111 ~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--~~~~~~~~~~~~ 188 (233)
T 3bqu_C 111 LQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVLNSWTDQ 188 (233)
T ss_dssp EECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-------CCEEEEECCC
T ss_pred EEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCee--CCCCceEecCCc
Confidence 99886553222233455543 56666544444445799999999999854 44 7999999877 4332111110
Q ss_pred eeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 278 HFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 278 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..........+.|.|..+..+|+|.|+|.|.|....
T Consensus 189 ~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 189 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp CTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred cCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 111111224567999999999999999999998654
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.84 E-value=8.7e-20 Score=148.32 Aligned_cols=181 Identities=18% Similarity=0.277 Sum_probs=119.1
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCC---ceeE---EeccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTG---SSLI---IRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~---~~~~---~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+....+.+|++|+|.|.+.+.+ ...+.|+|.........+. ...+ .... ...+|+.+..+...++++|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (221)
T 3m8o_H 6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM 85 (221)
T ss_dssp EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence 34566789999999999998643 4679999865432211111 1110 1111 113566666555567889999
Q ss_pred cccCCCCCeEEEEEeEEccc-ceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeee-eCC--CeEEEEEc
Q psy8823 101 KDIQETDAGYYRCQVIIGIN-NKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGG-HPT--PRISWRRE 172 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~--~~v~W~~~ 172 (386)
.+++.+|+|.|.|.+.+... ........|.|.. +|.+....+... .+|+.++|.|.+.+ .|. +.+.|+++
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~ 163 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSES 163 (221)
T ss_dssp CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence 99999999999999986531 2233445666652 233321111111 57999999999987 565 38999998
Q ss_pred CeeeC---------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 173 NNAIL---------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 173 ~~~~~---------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+..+. .........+.|.|.+...+|+|.|+|.+.|..+.
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~ 212 (221)
T 3m8o_H 164 GQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP 212 (221)
T ss_dssp STTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred CEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence 87652 12223333457999999999999999999997755
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=148.54 Aligned_cols=184 Identities=17% Similarity=0.264 Sum_probs=119.0
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccc-cCCceeEE----eccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPI-STGSSLII----RDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~L~ 99 (386)
+...+....+.+|++|+|.|.+.+. +...+.|+|+........+.. ..+..... .++|+.+..+...++++|.
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (242)
T 1hxm_B 4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT 83 (242)
T ss_dssp EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence 4555667779999999999999865 567799999653221111111 11111111 2456665544444678999
Q ss_pred EcccCCCCCeEEEEEeEEccc------ceeeeEEEEEEecC-------CeeecCCCceEEEeCCccEEEEEEeeee-CC-
Q psy8823 100 VKDIQETDAGYYRCQVIIGIN------NKISAEVDLQVRRP-------PVISDNSTRSLVVSEGQPVQLECFAGGH-PT- 164 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~- 164 (386)
|.+++.+|+|.|.|.+.+... ......+.|.|... |......+....+.+|+.++|.|.+.+. |.
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~ 163 (242)
T 1hxm_B 84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDV 163 (242)
T ss_dssp ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCC
T ss_pred ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCC
Confidence 999999999999999987531 11223467777653 3222222222234569999999999887 54
Q ss_pred CeEEEEEcCe-eeCCCC--------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 165 PRISWRRENN-AILPTG--------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 165 ~~v~W~~~~~-~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.++|++++. .+.... +.......|.|.+... + |.|+|.+.|..+.
T Consensus 164 ~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~ 218 (242)
T 1hxm_B 164 IKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNK 218 (242)
T ss_dssp EEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSG
T ss_pred eEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCC
Confidence 6899999987 443221 1122345788888765 4 9999999998775
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=151.09 Aligned_cols=164 Identities=19% Similarity=0.294 Sum_probs=113.1
Q ss_pred CceEEEeCCccEEEEEEeeee-------CCCeEEEEEcCeee-----CC------------CCceEE------eeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH-------PTPRISWRRENNAI-----LP------------TGGSIY------RGSILKI 191 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~-----~~------------~~~~~~------~~~~l~i 191 (386)
+..+.+.+|++++|.|.+.+. +.+.+.|++++... .. ..+... ...+|.|
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I 86 (214)
T 2zg1_A 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI 86 (214)
T ss_dssp CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence 456778999999999998754 46789999986531 10 011111 1347999
Q ss_pred CCCCCCCCeEEEEEEecCCCCce---eeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEEEec----CCCeeEEEe
Q psy8823 192 PQITKEDRGTYYCVAENGVGKGT---RRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVEAY----PPPAIVWIK 261 (386)
Q Consensus 192 ~~~~~~d~g~y~C~~~~~~~~~~---~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~g~----p~~~~~W~~ 261 (386)
.+++.+|+|.|.|.+.+..+... ...+.|.|... |.+..+ ..+.+|+.++|.|.+.+. |.|.+.|++
T Consensus 87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~---~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~ 163 (214)
T 2zg1_A 87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL---EPLESGRPTRLSCSLPGSCEAGPPLTFSWTG 163 (214)
T ss_dssp CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC-----CCCCTTCCEEEEEECTTCCSCSSCCEEEEES
T ss_pred ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC---ccccCCCeEEEEEEeccCCCCCCCceEEEeC
Confidence 99999999999999998753211 24677777763 444332 136689999999999764 788999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEEEE
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVELF 321 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~ 321 (386)
++.. .... .....+.|.|..+..+|+|.|+|.|.|..+... +++.|.
T Consensus 164 ~~~~--~~~~-----------~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 164 NALS--PLDP-----------ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212 (214)
T ss_dssp STTS--SSCS-----------SCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred CCCc--cCCC-----------CceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence 9865 2111 112467899999999999999999999875544 444443
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=151.91 Aligned_cols=180 Identities=18% Similarity=0.283 Sum_probs=116.3
Q ss_pred CceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----C------------CCceEE------eeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----P------------TGGSIY------RGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----~------------~~~~~~------~~~~l~i~~~ 194 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|++++ .... . ..+... ....|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (227)
T 1mju_H 7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL 86 (227)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence 3456788999999999998765 5789999864 2110 0 111111 1358999999
Q ss_pred CCCCCeEEEEEEecCCCCceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeee
Q psy8823 195 TKEDRGTYYCVAENGVGKGTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVL 268 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~ 268 (386)
+.+|+|.|.|.+.+...........|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++++..+..
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~ 166 (227)
T 1mju_H 87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV 166 (227)
T ss_dssp CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCc
Confidence 999999999999986322122344666654 3555443333345679999999999985 777 9999999875211
Q ss_pred ecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 269 TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
....... ........+.|.|.++..+| |.|+|.|.|..+.......+.+..+|
T Consensus 167 ~~~~~~~----~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p 219 (227)
T 1mju_H 167 HTFPAVL----QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPT 219 (227)
T ss_dssp EECCCEE----ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-
T ss_pred EECCcee----cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCC
Confidence 1111110 01112245689999998888 99999999988877777766555444
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-19 Score=139.80 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=119.0
Q ss_pred eEEEeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTP--RISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
.+.+..|++++|.|.+ +.|.+ .|.|++.+..+ ...........|.|.+++.+|+|.|.|.+.|..+. ....+.|.
T Consensus 16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l-~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~~~~~lt 92 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL-GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLL 92 (210)
T ss_dssp EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT-CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEE
T ss_pred ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc-CcEEecCCccEEEECccCcccCceEEEEEEeCCCc-eEEEEEEE
Confidence 3678899999999999 88777 99999865443 11111223568999999999999999999998765 66789999
Q ss_pred EEecceEeeCCCcccccCCCcEEEEEEEEec-CC----CeeEEEeCCeeeeeecCceeE--Ee-------eeeecCceee
Q psy8823 222 VEFAPVITVPKPRLGQALQYDMDLECHVEAY-PP----PAIVWIKEDTQQVLTNNQHYS--IS-------HFATADEFTD 287 (386)
Q Consensus 222 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~----~~~~W~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~ 287 (386)
|+.+|......+. ....|+.+ |.|.+.+. |. +++.|++++.. +....... .. ..........
T Consensus 93 V~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~--L~~~~~~~~~~~~~~~~~~~~~~~~~~vt 168 (210)
T 1gsm_A 93 VYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQE--LEGAQALGPEVQEEEEEPQGDEDVLFRVT 168 (210)
T ss_dssp EEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEE--CTTCEECCCEEEECTTCCSSCCCCCEEEE
T ss_pred EEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEE--cccccccccceecccccccCCcceEEEEE
Confidence 9998864432222 56677888 99999985 64 48999999988 43322111 10 0111223345
Q ss_pred eEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 288 TTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 288 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
++|.+.....+|.+.|+|.|.+..-.....
T Consensus 169 s~~~~~~~~~D~~~~~tC~a~~~L~~~~~~ 198 (210)
T 1gsm_A 169 ERWRLPPLGTPVPPALYCQATMRLPGLELS 198 (210)
T ss_dssp EEEECCCCCSSCCSEEEEEEEEEETTEEEE
T ss_pred EEEeecCCcccCCceEEEEEEeeCCCCccc
Confidence 667777778888899999999987444433
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=149.62 Aligned_cols=181 Identities=20% Similarity=0.341 Sum_probs=118.2
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccC--Cc--eeE--EeccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IST--GS--SLI--IRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~--~~--~~~--~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+....+.+|++|+|.|.+.+.+ ...+.|+|++.......+. ... +. ... ...+|+.+..+...++++|.|
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 35667799999999999998765 5779999975321111111 100 00 000 012455554444456779999
Q ss_pred cccCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEc
Q psy8823 101 KDIQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRE 172 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~ 172 (386)
.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+ .++|+++
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 164 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPG-CSDTSGSSVTLGCLVKGYFPEPVTVKWNYG 164 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-SCCSCSSSEEEEEEEEEEBSSCCEEEEGGG
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccc-cccCCCCcEEEEEEEEEEeCCCeEEEEecC
Confidence 999999999999999875422 112345677763 3433322211 124679999999999887 878 9999998
Q ss_pred Cee----eCCC---CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 173 NNA----ILPT---GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 173 ~~~----~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.. .... .......+.|.|.+...+| |.|+|.+.|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 210 (220)
T 1pz5_B 165 ALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASK 210 (220)
T ss_dssp TCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred CcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence 863 1111 0222345679999988866 9999999998775
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-19 Score=143.43 Aligned_cols=182 Identities=20% Similarity=0.289 Sum_probs=115.4
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCceeEE---eccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGSSLII---RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++....+.+|++|+|.|.+.+.+ ...+.|||.........+. ...+..... ..+|+....+...++++|.|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (232)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 34566789999999999998654 5679999975332111111 111111111 13566665544556789999999
Q ss_pred CCCCCeEEEEEeEEccc--c---eeeeEEEEEEec----CCeeecCCCceEEEeCC-ccEEEEEEeeee-CCC-eEEEEE
Q psy8823 104 QETDAGYYRCQVIIGIN--N---KISAEVDLQVRR----PPVISDNSTRSLVVSEG-QPVQLECFAGGH-PTP-RISWRR 171 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~--~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g-~~v~l~C~~~~~-~~~-~v~W~~ 171 (386)
+.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+.. .+..| +.++|.|.+.+. |.+ .++|++
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~~~~g~~~v~L~C~~~g~~P~p~~v~W~~ 164 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCE-NSPSDTSSVAVGCLAQDFLPDSITFSWKY 164 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEE
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecccc-ccCCCCCcEEEEEEEEEEeCCCeEEEEEc
Confidence 99999999999973111 1 222345777765 23333211111 23467 899999999876 665 999999
Q ss_pred -cCeeeCCC--------CceEEeeeEEEECCCCC--CCCeEEEEEEecCCCC
Q psy8823 172 -ENNAILPT--------GGSIYRGSILKIPQITK--EDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 -~~~~~~~~--------~~~~~~~~~l~i~~~~~--~d~g~y~C~~~~~~~~ 212 (386)
+|..+... .......+.|.|.+... +|.|.|+|.+.|..+.
T Consensus 165 ~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~ 216 (232)
T 1dn0_B 165 KNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN 216 (232)
T ss_dssp TTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred CCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence 88776430 11222345789998887 8899999999998776
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-20 Score=153.40 Aligned_cols=181 Identities=15% Similarity=0.259 Sum_probs=119.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccC--CceeE---EeccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPIST--GSSLI---IRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~L~ 99 (386)
+.. |....+.+|++|+|.|.+.+. +...+.|+|.........+.... +.... ...+|+....+.....++|.
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (280)
T 3fku_X 4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD 82 (280)
T ss_dssp EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 444 677789999999999999864 45779999865432222111111 11111 11346666655566778999
Q ss_pred EcccCCCCCeEEEEEeEEc--------ccceeeeEEEEEEec---------------CCeeecCCCceEEEeCCccEEEE
Q psy8823 100 VKDIQETDAGYYRCQVIIG--------INNKISAEVDLQVRR---------------PPVISDNSTRSLVVSEGQPVQLE 156 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~~g~~v~l~ 156 (386)
|.+++.+|+|.|+|.+.+. ..........|.|.. ++.+. ..+. ..+.+|++++|.
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~-~~p~-~~v~~G~~v~L~ 160 (280)
T 3fku_X 83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLT-QPPS-VSKGLRQTATLT 160 (280)
T ss_dssp ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBB-CCSE-EEECTTCCEEEE
T ss_pred ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEE-eCCc-EEEecCCCEEEE
Confidence 9999999999999999765 122233455677765 22232 3333 789999999999
Q ss_pred EEeee-eC-CCeEEEEEcC--eeeC---C---------CCceEE----eeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 157 CFAGG-HP-TPRISWRREN--NAIL---P---------TGGSIY----RGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 157 C~~~~-~~-~~~v~W~~~~--~~~~---~---------~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
|.+.+ .+ .+.+.|++.. .... . ..+... ....|.|.+++.+|+|.|+|.+.+..
T Consensus 161 C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 161 CTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp EECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred EEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 99977 43 3789999843 1111 0 011111 13469999999999999999999865
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-20 Score=149.04 Aligned_cols=173 Identities=20% Similarity=0.340 Sum_probs=117.5
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--ee---eC---C-------------CCceEE------eeeEEEECC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NA---IL---P-------------TGGSIY------RGSILKIPQ 193 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~---~-------------~~~~~~------~~~~l~i~~ 193 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++++ .. +. . ..+... ....|.|.+
T Consensus 8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 87 (220)
T 1pz5_B 8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN 87 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence 345788999999999998765 6789999864 11 10 0 011111 123899999
Q ss_pred CCCCCCeEEEEEEecCCCCc--eeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCee
Q psy8823 194 ITKEDRGTYYCVAENGVGKG--TRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQ 265 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~ 265 (386)
++.+|+|.|+|.+.+..+.. ......|.|. .+|.+...++...+.+|+.++|.|.+.|. |.| .+.|++++..
T Consensus 88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~ 167 (220)
T 1pz5_B 88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALS 167 (220)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred CCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcc
Confidence 99999999999999875321 1134566665 34555544444456789999999999987 888 9999998864
Q ss_pred eeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 266 QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
.......... ........+.|.|.++..+| |.|+|.|.|..|..++++.+
T Consensus 168 ~~~~~~~~~~----~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~ 217 (220)
T 1pz5_B 168 SGVRTVSSVL----QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI 217 (220)
T ss_dssp TTEEECCCEE----ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred cceEEcCCcc----cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence 1101000000 00112246789999998877 99999999999987776553
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=146.52 Aligned_cols=168 Identities=19% Similarity=0.278 Sum_probs=114.9
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC----------------CCCceEEe------eeEEEECCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL----------------PTGGSIYR------GSILKIPQITKE 197 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~ 197 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+|++ .... ...+.... ...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 88 (210)
T 3d9a_H 9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE 88 (210)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence 34688999999999998765 4789999863 2210 01111111 238999999999
Q ss_pred CCeEEEEEEecCCCCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecC
Q psy8823 198 DRGTYYCVAENGVGKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNN 271 (386)
Q Consensus 198 d~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~ 271 (386)
|+|.|+|.+.+... ......|.|. .+|.+...++...+..|+.++|.|.+.|. |.| .+.|++++........
T Consensus 89 D~G~Y~C~~~~~~~--~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~ 166 (210)
T 3d9a_H 89 DTATYYCANWDGDY--WGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF 166 (210)
T ss_dssp GCEEEEEEETTSSC--BCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC
T ss_pred cCEEEEEEEecCcc--cccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEc
Confidence 99999999998642 2223456664 24555544444556789999999999987 888 9999999875211111
Q ss_pred ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEE
Q psy8823 272 QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
.... ........+.|.|.++..+| |.|+|.|.|..|......
T Consensus 167 ~~~~----~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 208 (210)
T 3d9a_H 167 PAVL----QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 208 (210)
T ss_dssp CCEE----ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred CCcc----CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence 1111 01112245679999998877 999999999999876544
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-19 Score=148.03 Aligned_cols=176 Identities=19% Similarity=0.287 Sum_probs=122.0
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----------------CCCceEEe------eeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----------------PTGGSIYR------GSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++++ ..+. ...+.... ...|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (256)
T 1nqb_A 8 GAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLT 87 (256)
T ss_dssp CCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCC
Confidence 446788999999999998765 5789999852 2210 01111111 3479999999
Q ss_pred CCCCeEEEEEEecCCCC----ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC-----eeEEEe--CCe
Q psy8823 196 KEDRGTYYCVAENGVGK----GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP-----AIVWIK--EDT 264 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-----~~~W~~--~~~ 264 (386)
.+|+|.|+|.+.+..+. .....+.|.|..+|.+...+....+.+|++++|.|.+.+.|.+ .+.|++ ++.
T Consensus 88 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~ 167 (256)
T 1nqb_A 88 SEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQ 167 (256)
T ss_dssp GGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTS
T ss_pred hhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCC
Confidence 99999999999987542 1234567778777776666666778899999999999998875 899999 554
Q ss_pred eee-ee-c--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-eeEEEEEEE
Q psy8823 265 QQV-LT-N--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-EKTVELFES 323 (386)
Q Consensus 265 ~~~-~~-~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 323 (386)
... +. . ..++... .......|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 168 SPKLLIYKVSNRFSGVPDRFSGS-----GSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp CEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CcEEEEEEeCCCCCccCCcEEEE-----ccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 321 10 0 1122211 01135679999999999999999999864422 234556664
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-19 Score=148.22 Aligned_cols=175 Identities=18% Similarity=0.291 Sum_probs=117.7
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--ee-----------------CCCCceEEe------eeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENN--AI-----------------LPTGGSIYR------GSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~~-----------------~~~~~~~~~------~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.| .+.+.|+++.. .. ....+.... ..+|.|.+++.
T Consensus 11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (247)
T 2ghw_B 11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 90 (247)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999998876 57899998531 11 001111111 34799999999
Q ss_pred CCCeEEEEEEecCCCC-ceeeeEEEEEEec---------------ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEE
Q psy8823 197 EDRGTYYCVAENGVGK-GTRRNIAVEVEFA---------------PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI 260 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~~-~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~ 260 (386)
+|+|.|+|.+.|..+. .......|.|... +.+...+....+.+|++++|.|.+.+.|.+.+.|+
T Consensus 91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~ 170 (247)
T 2ghw_B 91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWY 170 (247)
T ss_dssp GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEE
Confidence 9999999999987221 1223346666543 23444455566889999999999999998999999
Q ss_pred e--CCeeeee--ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eEEEEEEE
Q psy8823 261 K--EDTQQVL--TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFES 323 (386)
Q Consensus 261 ~--~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~ 323 (386)
+ ++..... .. ..++... .......|.|.+++.+|+|.|+|.|.|..+... ....|.|.
T Consensus 171 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 171 QQKPGQAPRPLIYDASTRATGIPDRFSGS-----GSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EECTTSCCEEEEETTTEECTTCCTTEEEE-----CSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EECCCCCcEEEEEEeccCCCccCCCEEEe-----cCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 9 4443211 00 1122111 112356799999999999999999998654332 34566564
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=147.59 Aligned_cols=178 Identities=20% Similarity=0.243 Sum_probs=115.7
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccc-ccccCCceeEE---eccceeeecCCCcceEEEEEcccC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEP-LPISTGSSLII---RDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|....+.+|++|+|.|.+.+.+ .+.+.|+|+........ .....+..... ..+|+.+..+...++++|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 5566789999999999998764 37799999643211111 11111111111 134555544434457799999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeeeCC
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAILP 178 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~ 178 (386)
.+|+|.|+|.+.+.. .......|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+ .++|++++..+..
T Consensus 87 ~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~ 163 (210)
T 3d9a_H 87 TEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGV 163 (210)
T ss_dssp GGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred cccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCC-cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccce
Confidence 999999999997542 122334566653 3433322111 124679999999999887 777 9999998875311
Q ss_pred C-------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 179 T-------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 179 ~-------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
. .+.....+.|.|.++..+| |.|+|.+.|..+.
T Consensus 164 ~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 203 (210)
T 3d9a_H 164 HTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 203 (210)
T ss_dssp EECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGT
T ss_pred EEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence 0 0122234579999988877 9999999998775
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=149.31 Aligned_cols=153 Identities=17% Similarity=0.239 Sum_probs=106.7
Q ss_pred eecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 36 KDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
+.+|++|+|.|.+ +.+.|.|+|++..+.. .. ..+.+|.|.+++.+|+|.|+|.+
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~--------------~~---------~~~~~L~i~~v~~~DsG~Y~C~~ 68 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGF--------------LT---------EDKKKWNLGSNAKDPRGMYQCKG 68 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEE--------------EE---------SSCCCEEEEEGGGCCEEEEEEES
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCC--------------CC---------CCCCeEEeCCCCcCCCEEEEEEe
Confidence 4689999999998 6778999998754310 00 01237999999999999999996
Q ss_pred EEcccceeeeEEEEEEec-------------------------------CCeeecCCCceEEEeCCccEEEEEEeeeeCC
Q psy8823 116 IIGINNKISAEVDLQVRR-------------------------------PPVISDNSTRSLVVSEGQPVQLECFAGGHPT 164 (386)
Q Consensus 116 ~~~~~~~~~~~~~l~v~~-------------------------------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~ 164 (386)
.+. .+..+.|.+.. ++.+. ..+ .....+|++++|.|. +.|.
T Consensus 69 ~~~----~s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~v~~~G~~v~L~C~--g~p~ 140 (204)
T 1sy6_A 69 SQN----KSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT-QTP-YKVSISGTTVILTCP--QYPG 140 (204)
T ss_dssp SSS----CCCCEEEEEEC-------------------------------------CCC-CEEEEETTEEEEECS--CCCS
T ss_pred cCC----CCeeEEEEEEEecccccccccccccccccccccccccccccccccee-cCC-ceeeecCCcEEEEcC--CCCC
Confidence 432 22234444430 11111 112 222238999999998 7888
Q ss_pred CeEEEEEcCeeeCCCC---ceEEeeeEEEECCC-CCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 165 PRISWRRENNAILPTG---GSIYRGSILKIPQI-TKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 165 ~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
+.++|++++..+.... .....+..|.|.++ +.+|+|.|+|.+.|..+...+..+.|.+
T Consensus 141 p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 141 SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp SCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred CceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 8999999998875432 12234778999999 9999999999999998864455665554
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-20 Score=152.13 Aligned_cols=175 Identities=20% Similarity=0.241 Sum_probs=116.9
Q ss_pred EEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eee---C-------------CCCceEEe------eeEEEECCCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGHP--TPRISWRREN--NAI---L-------------PTGGSIYR------GSILKIPQITKED 198 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~---~-------------~~~~~~~~------~~~l~i~~~~~~d 198 (386)
..+.+|++++|.|.+.+.| .+.+.|++++ ... . ...+.... ...|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 89 (257)
T 1f3r_B 10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD 89 (257)
T ss_dssp SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence 4688999999999998875 6789999862 111 0 01111111 3489999999999
Q ss_pred CeEEEEEEecCCC-------C-ceeeeEEEEEEecc---------------eEeeCCCcccccCCCcEEEEEEEEecCCC
Q psy8823 199 RGTYYCVAENGVG-------K-GTRRNIAVEVEFAP---------------VITVPKPRLGQALQYDMDLECHVEAYPPP 255 (386)
Q Consensus 199 ~g~y~C~~~~~~~-------~-~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~ 255 (386)
+|.|+|.+.+..+ . .......|.|...| .+...+....+.+|++++|.|.+.+.|.+
T Consensus 90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 169 (257)
T 1f3r_B 90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN 169 (257)
T ss_dssp CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBT
T ss_pred CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCC
Confidence 9999999998753 1 11234567776543 12233445678899999999999999888
Q ss_pred eeEEEe--CCeeee-e-ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 256 AIVWIK--EDTQQV-L-TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 256 ~~~W~~--~~~~~~-~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.+.|++ ++.... + .. ..++.... ......|.|.+++.+|+|.|+|.|.|..........|.|.
T Consensus 170 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~ 244 (257)
T 1f3r_B 170 YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG-----SGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELK 244 (257)
T ss_dssp CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----EBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec-----CCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEe
Confidence 999999 554321 1 10 11222110 1235689999999999999999999975222234455554
Q ss_pred e
Q psy8823 324 I 324 (386)
Q Consensus 324 ~ 324 (386)
.
T Consensus 245 ~ 245 (257)
T 1f3r_B 245 A 245 (257)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=147.82 Aligned_cols=181 Identities=18% Similarity=0.252 Sum_probs=117.4
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccc-cC--CceeE--EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPI-ST--GSSLI--IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+++...+.+|++|+|.|.+.+.+ ...+.|+|+........+.. .. +.... ...+|+.+..+...++++|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (225)
T 1op3_H 6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (225)
T ss_dssp EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence 34566799999999999998765 57799999753221111110 00 00000 01346665544445678999999
Q ss_pred cCCCCCeEEEEEeEEccc-----c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEE
Q psy8823 103 IQETDAGYYRCQVIIGIN-----N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISW 169 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W 169 (386)
++.+|+|.|+|.+.+..+ . .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |.+ .++|
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W 164 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSW 164 (225)
T ss_dssp CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEEC
T ss_pred CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEE
Confidence 999999999999987542 1 122345777765 23332211111 14579999999999876 665 8999
Q ss_pred EEcCeeeCC--------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 170 RRENNAILP--------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++++..+.. .++.......|.|.++..+| |.|+|.|.|....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 165 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp CTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred ecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 998865211 11222234578999998888 9999999996543
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=150.00 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=120.6
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----------------CCCceEEe------eeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----------------PTGGSIYR------GSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++.. ..+. ...+.... ...|.|.+++
T Consensus 9 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 88 (253)
T 3uzq_A 9 GAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLT 88 (253)
T ss_dssp CCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCC
Confidence 456788999999999998744 6789999832 1110 00111111 2359999999
Q ss_pred CCCCeEEEEEEecCCCCceeeeEEEEEEe---------------cceEeeCCCcccccCCCcEEEEEEEEecCCC----e
Q psy8823 196 KEDRGTYYCVAENGVGKGTRRNIAVEVEF---------------APVITVPKPRLGQALQYDMDLECHVEAYPPP----A 256 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~----~ 256 (386)
.+|+|.|+|.+.+..+........+.|.. +|.+...+....+.+|++++|.|.+.+.+.+ .
T Consensus 89 ~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~ 168 (253)
T 3uzq_A 89 SGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSF 168 (253)
T ss_dssp GGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEEC
T ss_pred cccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcE
Confidence 99999999999986554334456666664 3455656666788899999999999998876 8
Q ss_pred eEEEeCC--eeee-e-ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eEEEEEEE
Q psy8823 257 IVWIKED--TQQV-L-TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFES 323 (386)
Q Consensus 257 ~~W~~~~--~~~~-~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~ 323 (386)
+.|+++. .... + .. ..++... .......|.|.+++.+|+|.|+|.|.|..+..- .-..|.|.
T Consensus 169 v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~ 243 (253)
T 3uzq_A 169 MHWYQQKAGQPPKLLIYRASNLESGIPARFSGS-----GSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK 243 (253)
T ss_dssp EEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred EEEEEECCCCCCEEEEEEccccCCccCCceEEe-----CCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence 9999842 2111 1 10 0111111 111356799999999999999999999765433 35667776
Q ss_pred ecCCCC
Q psy8823 324 IIPVCP 329 (386)
Q Consensus 324 ~~p~~~ 329 (386)
..+..+
T Consensus 244 ~~~~~~ 249 (253)
T 3uzq_A 244 RPLEHH 249 (253)
T ss_dssp CC----
T ss_pred CCCCCc
Confidence 655443
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=148.50 Aligned_cols=195 Identities=17% Similarity=0.261 Sum_probs=121.2
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccccc-CCceeEE---eccceeeecCCCcceEEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPIS-TGSSLII---RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i 100 (386)
+...|....+.+|++|+|.|.+.+. +...+.|||.........+... .+..... ..+|+....+...++++|.|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 3444666778999999999999764 4567999997543211111111 1111111 34667666555557889999
Q ss_pred cccCCCCCeEEEEEeEEc---ccceeeeEEEEEEec---------CCeeecCCCceEEEeCCccEEEEEEeeee-CC-Ce
Q psy8823 101 KDIQETDAGYYRCQVIIG---INNKISAEVDLQVRR---------PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PR 166 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~---~~~~~~~~~~l~v~~---------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~ 166 (386)
.+++.+|+|.|.|.+.+. ........+.|.|.. +|......+....+.+|+.++|.|.+.+. |. +.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~ 163 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR 163 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence 999999999999999763 111222345677752 22221111222223458899999999886 64 58
Q ss_pred EEEEE-cCeeeCCCC--------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecc
Q psy8823 167 ISWRR-ENNAILPTG--------GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 167 v~W~~-~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
++|++ ++..+.... ......+.|.|.+... + |.|+|.+.|..... .+.+.+.++|
T Consensus 164 v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~---~~~~~~~fp~ 227 (230)
T 1ypz_F 164 VYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKG---GADQAIFFPS 227 (230)
T ss_dssp EEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTT---TSCEEEEECC
T ss_pred EEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCC---ceeEeeecCC
Confidence 99999 776553221 1122345788988876 4 99999999976541 2333444554
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=145.70 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=116.0
Q ss_pred ccceeeecCCcEEEEEEEeeCCC----CcEEEEecCCcccccccc-ccCCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPLP-ISTGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
|....+.+|++|+|.|.+.+.+. ..+.|+|+........+. ...+..... ..+|+.+..+...++++|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 56677999999999999987664 779999965321111111 111111111 1346665544445678999999
Q ss_pred cCCCCCeEEEEEeEEccc------c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEE
Q psy8823 103 IQETDAGYYRCQVIIGIN------N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RIS 168 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~ 168 (386)
++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+ .++
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g~~P~p~~v~ 165 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLT 165 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSCCEEE
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccc-ccccCCCCEEEEEEEccEeCCCEEEE
Confidence 999999999999987542 1 112346777763 3443322222 235689999999999886 766 999
Q ss_pred EEEcCeeeCCCC-------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 169 WRRENNAILPTG-------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 169 W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|++++..+.... ........|.|.+...+| |.|+|.+.|..+.
T Consensus 166 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~ 215 (228)
T 3bae_H 166 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASS 215 (228)
T ss_dssp EGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred EeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCC
Confidence 999886531100 112234568999988866 9999999998765
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=146.76 Aligned_cols=172 Identities=18% Similarity=0.296 Sum_probs=116.4
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--ee---eC---C-------------CCceEEe------eeEEEECCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NA---IL---P-------------TGGSIYR------GSILKIPQI 194 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~---~-------------~~~~~~~------~~~l~i~~~ 194 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+++. .. +. . ..+.... ...|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence 34688999999999998765 6789999853 11 10 0 0111111 348999999
Q ss_pred CCCCCeEEEEEEecCCCC----ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCe
Q psy8823 195 TKEDRGTYYCVAENGVGK----GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDT 264 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~ 264 (386)
+.+|+|.|.|.+.+..+. .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.| .+.|++++.
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 168 (222)
T 1q9r_B 89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 168 (222)
T ss_dssp CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCe
Confidence 999999999999986531 122334566653 4555544434446689999999999985 888 999999987
Q ss_pred eeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 265 QQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
.+... ...... ........+.|.|.++..+| |.|+|.|.|..|.......+
T Consensus 169 ~~~~~---~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 169 SSGVH---TFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 219 (222)
T ss_dssp CTTEE---EEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred EcceE---eccccc-cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence 62111 111100 11122235679999999999 99999999999987665544
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-19 Score=145.61 Aligned_cols=165 Identities=16% Similarity=0.243 Sum_probs=111.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----e--------CC-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----I--------LP-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~--------~~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|+.++|.|.+.+.+.+.+.|+++... + .. ..+... ....|.|.+++.+|+|.|+
T Consensus 11 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 90 (250)
T 3esu_F 11 TSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYF 90 (250)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEE
Confidence 4566788999999999999999899999995311 0 00 011111 1237999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEec-------------------ceEeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeC
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFA-------------------PVITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKE 262 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~ 262 (386)
|.+.|..+........|.|..+ +.....+....+.+|++++|.|.+.+.+ .+.+.|+++
T Consensus 91 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~ 170 (250)
T 3esu_F 91 CQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQ 170 (250)
T ss_dssp EEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred EEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence 9999876543344456666543 2233344556688999999999998877 679999987
Q ss_pred --Ceeeeee---------------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 263 --DTQQVLT---------------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 263 --~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
+...... ...++..... .......|.|.+++.+|+|.|+|.|.|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 171 RPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTAD---KSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp CTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCCCCcEEEEEEeccCCccccCccccceEEEEec---CCCCeEEEEECCCCcccCEEEEEEEec
Confidence 3331111 0012221110 112345799999999999999999997
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=142.05 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=106.0
Q ss_pred cceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEec----cceeeecCCCcceEEEEEcccCCC
Q psy8823 32 QEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD----SRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
....+.+|++|+|.|.+.. .+...|.|+|++... ...+..+......+ +|+.+ ...+++|.|.+++.+
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~---i~~~~~~~~~~~~~~~~~~R~~l----~~~~~sL~I~~v~~~ 79 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQK---ILEYFPNGKKTVFESVFKDRVDL----DKTNGALRIYNVSKE 79 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCE---EEEECSSSCEEECSSTTTTTEEE----CTTTCCEEECSCCGG
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeE---EEEEECCCCeeEcchhcCCeEEE----eCCCccEEEcCCCHH
Confidence 3456889999999999754 235679999953211 11111111111112 23333 224558999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCceEEe
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYR 185 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~ 185 (386)
|+|.|+|.+.+.. .....+.|.|..++.. ..+. ..+..++|.|.+ .+ |.+.++|++++..+. ...
T Consensus 80 D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~~-----P~i~-~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~~ 145 (180)
T 2dru_A 80 DRGDYYMRMLHET--EDQWKITMEVYEMVSK-----PMIY-WECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SLR 145 (180)
T ss_dssp GCEEEEEEEESSS--EEEEEEEEEEECCCCC-----CEEE-EEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EES
T ss_pred HCeEEEEEEEcCC--eEEEEEEEEEECCCCC-----CEEE-ecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CCC
Confidence 9999999987543 5567778888765321 1122 245779999999 66 889999999998764 122
Q ss_pred eeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 186 GSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 186 ~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.+|.+.. .+|+|.|+|.+.|..+.
T Consensus 146 ~~~l~~~~--~~d~g~Y~C~a~N~~~~ 170 (180)
T 2dru_A 146 QKTMSYQW--TNLRAPFKCKAVNRVSQ 170 (180)
T ss_dssp SSEEEEEC--SCCSSCEEEEEEETTEE
T ss_pred CCEEEEEE--hhcCccEEEEEecCcCc
Confidence 34566533 78999999999998776
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=150.35 Aligned_cols=179 Identities=17% Similarity=0.308 Sum_probs=118.8
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eee--C---------------CCCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAI--L---------------PTGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~--~---------------~~~~~~~------~~~~l~i~~~~~ 196 (386)
...+.+|++++|.|.+.+.+ .+.+.|++.. ... . ...+... ....|.|.+++.
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (256)
T 3umt_A 11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS 90 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence 35688999999999998765 6789999843 111 0 0011111 123599999999
Q ss_pred CCCeEEEEEEecCCC---CceeeeEEEEEEe----------------cceEeeCCCcccccCCCcEEEEEEEEecCCCee
Q psy8823 197 EDRGTYYCVAENGVG---KGTRRNIAVEVEF----------------APVITVPKPRLGQALQYDMDLECHVEAYPPPAI 257 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~ 257 (386)
+|+|.|+|.+.+... ........|.|.. +|.+...+....+.+|++++|.|.+.+.|.+.+
T Consensus 91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v 170 (256)
T 3umt_A 91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNL 170 (256)
T ss_dssp GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEE
Confidence 999999999998621 1123445666664 455666666678889999999999999988899
Q ss_pred EEEeCC--ee-eee-ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eEEEEEEEe
Q psy8823 258 VWIKED--TQ-QVL-TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KTVELFESI 324 (386)
Q Consensus 258 ~W~~~~--~~-~~~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~ 324 (386)
.|++.. .. ..+ .. ..++... .......|.|.+++.+|+|.|+|.|.|..+..- ....|.|..
T Consensus 171 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 171 NWLQQKPDGTIKRLIYATSSLDSGVPKRFSGS-----RSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp EEEEECTTCCEEEEEETTTEECTTSCTTEEEE-----EETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred EEEEECCCCCcEEEEEeccccCCccCCCEEEe-----cCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence 999842 22 111 10 1122111 111355799999999999999999999755332 356777765
Q ss_pred cCC
Q psy8823 325 IPV 327 (386)
Q Consensus 325 ~p~ 327 (386)
.+.
T Consensus 246 ~~~ 248 (256)
T 3umt_A 246 AAA 248 (256)
T ss_dssp ---
T ss_pred CCc
Confidence 443
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-19 Score=144.57 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=110.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e---eC---------CCCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A---IL---------PTGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~---------~~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+++.. . +. ...+... ....|.|.+++.+|+|.|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (242)
T 2znx_A 8 PATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (242)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence 445678899999999999988888999999631 1 10 0111111 1347999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEecce-------------EeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCC--eee
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFAPV-------------ITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKED--TQQ 266 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~--~~~ 266 (386)
|.+.+..+........|.|..+|. ....+....+.+|++++|.|.+.+.| .+.+.|+++. ...
T Consensus 88 C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~ 167 (242)
T 2znx_A 88 CQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRL 167 (242)
T ss_dssp EEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCE
T ss_pred EeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCc
Confidence 999987543233445677766542 22223334588999999999999876 4689999853 221
Q ss_pred e-ee----c---------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 267 V-LT----N---------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 267 ~-~~----~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
. +. . ..++.... ........|.|.+++.+|+|.|+|.|.|.
T Consensus 168 ~~l~~~~~~g~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 168 EYMGYVSYSGSTYYNPSLKSRISITR---DTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEEECTTSCEEECGGGTTCEEEEE---ETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred EEEEEEecCCccccCccccCcEEEEe---cCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 0 00 0 11222211 01123468999999999999999999984
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=139.24 Aligned_cols=152 Identities=16% Similarity=0.278 Sum_probs=110.4
Q ss_pred ceEEEeCCccEEEEEEee--eeCCCeEEEEE--cCeeeC----------CCCce-EEeeeEEEECCCCCCCCeEEEEEEe
Q psy8823 143 RSLVVSEGQPVQLECFAG--GHPTPRISWRR--ENNAIL----------PTGGS-IYRGSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~--~~~~~~v~W~~--~~~~~~----------~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
..+...+|++++|.|... +.+.+.+.|++ ++..+. ...+. ...+++|.|.+++.+|+|.|+|.+.
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~ 86 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY 86 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEE
Confidence 456788999999999542 34456899999 887652 11221 2235689999999999999999999
Q ss_pred cCCCCce-eeeEEEEEEec---ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecC
Q psy8823 208 NGVGKGT-RRNIAVEVEFA---PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283 (386)
Q Consensus 208 ~~~~~~~-~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 283 (386)
|..+... ...+.|.|..+ |.+.. .+..++|.|.+.+.|.+.+.|++++.. + ..
T Consensus 87 n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~--l-~~------------ 143 (182)
T 1hnf_A 87 DTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKH--L-KL------------ 143 (182)
T ss_dssp ETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCE--E-EE------------
T ss_pred eCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEE--C-CC------------
Confidence 9877633 35677877653 33322 233689999999999999999999987 3 11
Q ss_pred ceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 284 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
....|.+.. ..+|+|.|+|.|.|+.|....+..+
T Consensus 144 --~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 144 --SQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp --ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred --CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence 122233333 4689999999999999998887766
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=149.75 Aligned_cols=203 Identities=15% Similarity=0.181 Sum_probs=114.7
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee----
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI---- 176 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~---- 176 (386)
.++.|.+.|.|.+.+..+... ....+.|. ..+..+.+.+|++++|.|.+.+ +.+.+.|+|... ..
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~-~~~~~~v~-------~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~ 73 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSG-GGGGMKVI-------QTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLI 73 (270)
T ss_dssp --------------------------CCCE-------EECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEE
T ss_pred chhhhHHHHHHHHhccCCccc-cccceeEE-------eCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEE
Confidence 457899999999886543321 11122221 1234567889999999999865 667899998321 10
Q ss_pred --------CCC---C-ceEE-----eeeEEEECCCCCCCCeEEEEEEecCCC---CceeeeEEEEEEe------cceEee
Q psy8823 177 --------LPT---G-GSIY-----RGSILKIPQITKEDRGTYYCVAENGVG---KGTRRNIAVEVEF------APVITV 230 (386)
Q Consensus 177 --------~~~---~-~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~ 230 (386)
... . +... ....|.|.+++.+|+|.|.|.+.+... ........+.|.. +|.+..
T Consensus 74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~ 153 (270)
T 3qib_D 74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV 153 (270)
T ss_dssp EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE
T ss_pred EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE
Confidence 000 0 1111 145799999999999999999986432 1123345666665 555443
Q ss_pred -CCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeeeecCceeEEee------eeecCceeeeEEEEeecccCC-C
Q psy8823 231 -PKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVLTNNQHYSISH------FATADEFTDTTIRVITIEKRQ-Y 300 (386)
Q Consensus 231 -~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d-~ 300 (386)
.+....+..|+.++|.|.+.| .|.+ .+.|+++|.. +.......... .........+.|.|.....+| +
T Consensus 154 ~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~ 231 (270)
T 3qib_D 154 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE--VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPR 231 (270)
T ss_dssp EECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE--ECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTT
T ss_pred ECCCccccccCCceEEEEEecceeCCCeEEEEEECCEE--CCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCC
Confidence 333334556999999999998 6667 8999999987 44332211000 011222234678888888887 9
Q ss_pred eEEEEEEEcCCCceee
Q psy8823 301 GSYICRAANKLGTSEK 316 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~ 316 (386)
|.|+|.|.|.......
T Consensus 232 g~YtC~v~~~~l~~~~ 247 (270)
T 3qib_D 232 NHFRCQVQFYGLSEND 247 (270)
T ss_dssp CEEEEEEEECCBCTTS
T ss_pred CeEEEEEEecCCCCcc
Confidence 9999999998766554
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-19 Score=149.69 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=116.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe-----eeCC---------CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN-----AILP---------TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~-----~~~~---------~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.+.+.|.+.+.|++++. .+.. ..+... ....|.|.+++.+|+|.|+
T Consensus 19 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 98 (276)
T 3auv_A 19 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 98 (276)
T ss_dssp CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEE
Confidence 445678899999999999988888999998652 1110 111111 1237999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEecc-------------e-EeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCC--ee
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFAP-------------V-ITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKED--TQ 265 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~p-------------~-~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~--~~ 265 (386)
|.+.|..+........|.|...| . ....+....+.+|++++|.|.+.+.| .+.+.|++++ ..
T Consensus 99 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~ 178 (276)
T 3auv_A 99 CQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKC 178 (276)
T ss_dssp EEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCC
T ss_pred EEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCC
Confidence 99998754323334556665543 1 22233456788999999999999877 4799999964 21
Q ss_pred e-eee--------------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC---Cc--eeeEEEEEEEec
Q psy8823 266 Q-VLT--------------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL---GT--SEKTVELFESII 325 (386)
Q Consensus 266 ~-~~~--------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~---g~--~~~~~~l~v~~~ 325 (386)
. .+. ...++..... .......|.|.+++.+|+|.|+|.|.|.. +. -.....|.|...
T Consensus 179 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~ 255 (276)
T 3auv_A 179 LEWVAGITPAGGYTYYADSVKGRFTISAD---TSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSA 255 (276)
T ss_dssp EEEEEEECGGGCCEEECTTTTTTEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred cEEEEEEeccCCccccccccCCcEEEEec---CCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEccc
Confidence 1 110 0112221110 01134589999999999999999999983 22 123456666544
Q ss_pred C
Q psy8823 326 P 326 (386)
Q Consensus 326 p 326 (386)
+
T Consensus 256 ~ 256 (276)
T 3auv_A 256 S 256 (276)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-19 Score=138.03 Aligned_cols=160 Identities=13% Similarity=0.196 Sum_probs=107.4
Q ss_pred cceeeecCCcEEEEEEEee--CCCCcEEEEe--cCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 32 QEQIKDIGGTVELKCSVQY--AQDYPVIWMK--VDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~--~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
....+.+|++|+|.|.... .+.+.|.|++ ++..+.. ...+......+.|+.+.. +++|.|.+++.+|
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~----~~~~~~~~~~~~R~~~~~-----ngsL~I~~v~~~D 77 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQ----FRKEKETFKEKDTYKLFK-----NGTLKIKHLKTDD 77 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEE----ECGGGCEEESCTTEEECT-----TSCEEECSCCGGG
T ss_pred cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEE----EeCccCCCCCCCeEEECC-----CCCEEECCCChhh
Confidence 3455889999999995432 3456799999 6654311 001111112344555442 2389999999999
Q ss_pred CeEEEEEeEEcccce-eeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEee
Q psy8823 108 AGYYRCQVIIGINNK-ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG 186 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 186 (386)
+|.|+|.+.+..+.. ....+.|.|+.+... ..+.. .+..+.|.|.+.+.|.+.+.|++++..+ . ...
T Consensus 78 sG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~-----P~i~~-~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~-----~~~ 145 (182)
T 1hnf_A 78 QDIYKVSIYDTKGKNVLEKIFDLKIQERVSK-----PKISW-TCINTTLTCEVMNGTDPELNLYQDGKHL-K-----LSQ 145 (182)
T ss_dssp CEEEEEEEEETTSCEEEEEEEEEEEECCCCC-----CEEEE-ETTTTEEEEECSSCSSCEEEEEESSCEE-E-----EES
T ss_pred CEEEEEEEEeCCCceeEEEEEEEEEcCcCCC-----CEEEE-ccCcEEEEeEccCCCCCEEEEEECCEEC-C-----CCC
Confidence 999999999865543 245677888764211 11122 3447999999998888999999999877 1 122
Q ss_pred eEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 187 SILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 187 ~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
..|.+.. ..+|+|.|+|.|.|..+..
T Consensus 146 ~~i~~~~-~~~d~G~Y~C~a~N~~~~~ 171 (182)
T 1hnf_A 146 RVITHKW-TTSLSAKFKCTAGNKVSKE 171 (182)
T ss_dssp SCEEEEC-CSCEEEEEEEEEECSSCEE
T ss_pred cEEEEec-ccCCCcEEEEEEEeCCCCc
Confidence 3344433 4789999999999998873
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=149.58 Aligned_cols=181 Identities=17% Similarity=0.243 Sum_probs=116.4
Q ss_pred eEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e--eC--------------CCCceEE------eeeEEEECCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGH--PTPRISWRRENN--A--IL--------------PTGGSIY------RGSILKIPQITKE 197 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~--~~--------------~~~~~~~------~~~~l~i~~~~~~ 197 (386)
...+.+|++++|.|.+.+. +.+.+.|++... . .. ...+... ....|.|.+++.+
T Consensus 17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 96 (257)
T 3gkz_A 17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSE 96 (257)
T ss_dssp CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChh
Confidence 3458899999999999874 467899998431 1 10 0011111 1236999999999
Q ss_pred CCeEEEEEEecCCCC---ceeeeEEEEEEec--------------ceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEE
Q psy8823 198 DRGTYYCVAENGVGK---GTRRNIAVEVEFA--------------PVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVW 259 (386)
Q Consensus 198 d~g~y~C~~~~~~~~---~~~~~~~l~v~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W 259 (386)
|+|.|+|.+.+..+. .......|.|..+ +.+...+....+.+|++++|.|.+.+.+.+ .+.|
T Consensus 97 DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W 176 (257)
T 3gkz_A 97 DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYW 176 (257)
T ss_dssp GCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEE
T ss_pred hCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEE
Confidence 999999999986221 1233456666654 445555666778899999999999998887 8999
Q ss_pred EeC--Ceeee-e-ec--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-eeEEEEEEEecC
Q psy8823 260 IKE--DTQQV-L-TN--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-EKTVELFESIIP 326 (386)
Q Consensus 260 ~~~--~~~~~-~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p 326 (386)
++. +.... + .. ..++... .......|.|.+++.+|+|.|+|.|.|..... ..-..|.|...|
T Consensus 177 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~ 251 (257)
T 3gkz_A 177 YQQKPGSSPKLWIYSTSNLASGVPARFSGS-----GSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAP 251 (257)
T ss_dssp EEECTTSCCEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred EEECCCCCcEEEEEEccccCCCcCCCEEEe-----cCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence 984 22211 1 10 0111111 11134679999999999999999999865432 234566666555
Q ss_pred CCC
Q psy8823 327 VCP 329 (386)
Q Consensus 327 ~~~ 329 (386)
..|
T Consensus 252 ~~~ 254 (257)
T 3gkz_A 252 HHH 254 (257)
T ss_dssp ---
T ss_pred CCC
Confidence 443
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=143.59 Aligned_cols=176 Identities=15% Similarity=0.341 Sum_probs=110.9
Q ss_pred ceeeecCCcEEEEEEEee----CCCCcEEEEecCCccccccccccCCceeEE--eccceeeecCCCcceEEEEEcccCCC
Q psy8823 33 EQIKDIGGTVELKCSVQY----AQDYPVIWMKVDRNKVTEPLPISTGSSLII--RDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+..+.+|++|+|.|.+.+ .+.+.+.|++++..+. ....+..... ...|..+. ..++.+|.|.+++.+
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~----~~~~~~~~~~~~~~~r~~~~---~~~~~~L~I~~v~~~ 75 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVL----TMMSGDMNIWPEYKNRTIFD---ITNNLSIVILALRPS 75 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEE----EEETTEEEECHHHHTTEEEE---STTTTEEEECSCCGG
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEE----EEeCCceeecCcccceeEEc---cCCCcEEEEecccch
Confidence 356889999999999863 2456799999875431 1111110000 01122221 123458999999999
Q ss_pred CCeEEEEEeEEccccee----eeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCc
Q psy8823 107 DAGYYRCQVIIGINNKI----SAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~ 181 (386)
|+|.|+|.+.+..+... ...+.|.|..++..+.. .......|+.++|.|.+ .|.|.|.++|++++..+.....
T Consensus 76 D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~--~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~ 153 (201)
T 1dr9_A 76 DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI--SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT 153 (201)
T ss_dssp GCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEE--EEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE
T ss_pred hCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCce--EeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccc
Confidence 99999999998654332 45677777765321110 01112458889999999 5899999999999988764432
Q ss_pred eEEe--e-eEE---EECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 182 SIYR--G-SIL---KIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 182 ~~~~--~-~~l---~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
.... . ..+ .+..+..+|.|.|+|.|.|..+. .+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~-~s~~~ 195 (201)
T 1dr9_A 154 TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLR-VNQTF 195 (201)
T ss_dssp EEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCC-EEEEE
T ss_pred eEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcce-eeeEE
Confidence 2211 1 111 22344568999999999999887 33433
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=144.17 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=114.5
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--ee---eC--------------CCCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NA---IL--------------PTGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~--------------~~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++.. .. +. ...+... ....|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR 87 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence 346788999999999998765 5689999853 11 10 0111111 13489999999
Q ss_pred CCCCeEEEEEEecCCCC--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CC--CeeEEEeCCeee
Q psy8823 196 KEDRGTYYCVAENGVGK--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PP--PAIVWIKEDTQQ 266 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~--~~~~W~~~~~~~ 266 (386)
.+|+|.|.|.+.+..+. .......|.|.. +|.+...+ ...+..|+.++|.|.+.+. |. +.+.|++++..+
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~ 166 (220)
T 2fbj_H 88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI 166 (220)
T ss_dssp GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred hhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence 99999999999986542 122345677753 35554433 3456789999999999887 76 689999998763
Q ss_pred eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 267 VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
....... ...........+.|.|.....+|.|.|+|.|.|..|..+
T Consensus 167 ~~~~~~~---~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 167 TTVNFPP---ALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEECCC---EECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred ceEecCc---eECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 1111000 001111222345799999999999999999999998755
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=145.89 Aligned_cols=166 Identities=14% Similarity=0.201 Sum_probs=111.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee--------------C-CCCceEE-----eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI--------------L-PTGGSIY-----RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~--------------~-~~~~~~~-----~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|. .+.+.+.+.|+++. ... . ...+... ....|.|.+++.+|+
T Consensus 7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds 85 (238)
T 2p1y_A 7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT 85 (238)
T ss_dssp CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence 45567899999999999 67788899999962 111 0 0111111 234799999999999
Q ss_pred eEEEEEEecCCCC----ceeeeEEEEEEecc------------eEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCC
Q psy8823 200 GTYYCVAENGVGK----GTRRNIAVEVEFAP------------VITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED 263 (386)
Q Consensus 200 g~y~C~~~~~~~~----~~~~~~~l~v~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~ 263 (386)
|.|+|.+.+..+. .......|.|...+ .+...+....+.+|++++|.|.+.+.|.+.+.|++++
T Consensus 86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~ 165 (238)
T 2p1y_A 86 SVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQF 165 (238)
T ss_dssp EEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred eeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence 9999999987542 11234466665543 3444455667889999999999999999999999964
Q ss_pred ee---eeee---------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 264 TQ---QVLT---------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 264 ~~---~~~~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.. ..+. ...++.... ........|.|.+++.+|+|.|+|.|.|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 166 PGEGPALLISILSVSDKKEDGRFTIFF---NKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp TTSCCEEEEEEETTCSEEEETTEEEEE---ETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred CCCCCEEEEEEccCCCcccCCceEEEe---cCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 21 0010 011111110 011235689999999999999999999984
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=148.77 Aligned_cols=180 Identities=20% Similarity=0.314 Sum_probs=116.1
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-cc-CCceeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-IS-TGSSLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++|+|.|.+.+. +...+.|+|.........+. .. .+.... ...+|+.+..+...++++|.|.++
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL 86 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 456778999999999999763 34669999965432211111 11 111101 123566666555567889999999
Q ss_pred CCCCCeEEEEEeEEcc---cceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEEEcCe
Q psy8823 104 QETDAGYYRCQVIIGI---NNKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWRRENN 174 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~~~~~ 174 (386)
+.+|+|.|.|.+.+.. .........|.|. .+|.+....+ ...+..|+.++|.|.+.+ .|.+ .+.|++++.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~ 165 (253)
T 3liz_H 87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (253)
T ss_dssp CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecC-CcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence 9999999999997642 1222344567775 3444432212 223557999999999987 5655 899999886
Q ss_pred eeC-------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 175 AIL-------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 175 ~~~-------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
... ...+.....+.|.|.+...+| |.|+|.+.|..+.
T Consensus 166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~ 209 (253)
T 3liz_H 166 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 209 (253)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGT
T ss_pred ecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCC
Confidence 321 001233334679999999999 9999999997665
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-20 Score=151.31 Aligned_cols=199 Identities=13% Similarity=0.163 Sum_probs=113.9
Q ss_pred eEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEE-EeCCccEEEEEEeeeeC----CCeEEEEEcCeeeCCCC---
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLV-VSEGQPVQLECFAGGHP----TPRISWRRENNAILPTG--- 180 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~-~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~--- 180 (386)
|.|.|.+.+....- ... .+..+|.+....+.... +..|+.++|.|.+.|.+ ...++|+++|..+....
T Consensus 1 ~~~~~~~~~~~~~c-~~~---~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~ 76 (240)
T 4acp_A 1 GTKSCDKTHTCPPC-PAP---ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP 76 (240)
T ss_dssp --------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC
T ss_pred CceeeeeeecCCCC-Ccc---ccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc
Confidence 78999988754321 111 01123333333333333 44699999999998864 33799999998874321
Q ss_pred ------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC-ceeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEe
Q psy8823 181 ------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK-GTRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEA 251 (386)
Q Consensus 181 ------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 251 (386)
......+.|.|.....+|.|.|+|.+.|..+. ...+.+.+ .+..+|.+.+.+.......|+.++|.|.+.|
T Consensus 77 ~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~g 156 (240)
T 4acp_A 77 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKG 156 (240)
T ss_dssp CEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEE
T ss_pred ceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeE
Confidence 11222457888888778899999999997653 22333332 2446777766555444445899999999998
Q ss_pred -cCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 252 -YPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 252 -~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
+|++ .+.|++++.. +............+..+...+.|.+.....++.|.|+|.|.|..-.
T Consensus 157 f~P~~i~v~W~k~g~~--~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~ 218 (240)
T 4acp_A 157 FYPSDIAVEWESNGQP--ENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 218 (240)
T ss_dssp EBSSCCEEEEEETTEE--CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EeCCCcEEEEEECCEE--CCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence 5554 7999999987 3221111111112222334567888877778899999999998743
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-20 Score=151.43 Aligned_cols=176 Identities=18% Similarity=0.259 Sum_probs=115.9
Q ss_pred CceEEEeCCccEEEEEEeeeeC-CC-eEEEEEcCe--ee---C--------C-CCceEE----eeeEEEECCCCCCCCeE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-TP-RISWRRENN--AI---L--------P-TGGSIY----RGSILKIPQITKEDRGT 201 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-~~-~v~W~~~~~--~~---~--------~-~~~~~~----~~~~l~i~~~~~~d~g~ 201 (386)
+..+.+.+|++++|.|.+.+.+ .+ .+.|++++. .. . . ..+... ....|.|.+++.+|+|.
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 105 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD 105 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence 3445688999999999998754 34 699998742 11 0 0 111111 13479999999999999
Q ss_pred EEEEEecCCCC--ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCce
Q psy8823 202 YYCVAENGVGK--GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQH 273 (386)
Q Consensus 202 y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~ 273 (386)
|+|.+.+..+. .......+.|. .+|.+...++......|+.++|.|.+.|.+++ .+.|++++.. +.....
T Consensus 106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~--l~~~~~ 183 (234)
T 2j6e_L 106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAP--VKAGVE 183 (234)
T ss_dssp EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEE--CCSSEE
T ss_pred EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEE--CCCCcc
Confidence 99999987762 12223445553 34544443333334468899999999986443 8999999987 433311
Q ss_pred eE-EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 274 YS-ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 274 ~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
.. ............+.|.|.++..+|+|.|+|.|.|..+..++++.
T Consensus 184 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 230 (234)
T 2j6e_L 184 TTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230 (234)
T ss_dssp ECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred ccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence 10 00011112224568999999999999999999999887665543
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=144.67 Aligned_cols=180 Identities=17% Similarity=0.264 Sum_probs=120.6
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eC----------CCCceEE------eeeEEEECCCCCCCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----IL----------PTGGSIY------RGSILKIPQITKEDR 199 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~----------~~~~~~~------~~~~l~i~~~~~~d~ 199 (386)
.+..+.+.+|++++|.|.+.+.+.+.+.|++.... +. ...+... ...+|.|.+++.+|+
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds 88 (256)
T 3tf7_C 9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDS 88 (256)
T ss_dssp SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred cCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccC
Confidence 34567889999999999998889999999984311 00 0011111 245799999999999
Q ss_pred eEEEEEEecCCCCc---eeeeEEEEEEe--------------------cceEeeCCCcccccCCCcEEEEEEEEecCCCe
Q psy8823 200 GTYYCVAENGVGKG---TRRNIAVEVEF--------------------APVITVPKPRLGQALQYDMDLECHVEAYPPPA 256 (386)
Q Consensus 200 g~y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~ 256 (386)
|.|+|.+.+..+.. ......|.|.. +|.+...+....+.+|++++|.|.+.+. .+.
T Consensus 89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~ 167 (256)
T 3tf7_C 89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNY 167 (256)
T ss_dssp SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSE
T ss_pred EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceE
Confidence 99999999865421 22344566654 4456666666777899999999999876 679
Q ss_pred eEEEeCCe--ee-eee---c---------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee--eEEE
Q psy8823 257 IVWIKEDT--QQ-VLT---N---------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE--KTVE 319 (386)
Q Consensus 257 ~~W~~~~~--~~-~~~---~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~ 319 (386)
+.|++... .. .+. . ..++... ........|.|.+++.+|+|.|+|.|.|..|... ....
T Consensus 168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~ 243 (256)
T 3tf7_C 168 MYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKAT----RTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSK 243 (256)
T ss_dssp EEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEE----CCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEE
T ss_pred EEEEEECCCCCeEEEEEEcCCCceecCccCCceEEE----eCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeE
Confidence 99998432 10 010 0 0111110 0112355899999999999999999999877543 2355
Q ss_pred EEEEec
Q psy8823 320 LFESII 325 (386)
Q Consensus 320 l~v~~~ 325 (386)
|.|...
T Consensus 244 l~v~~~ 249 (256)
T 3tf7_C 244 LTVLEL 249 (256)
T ss_dssp EEEECG
T ss_pred EEEEcc
Confidence 656543
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-19 Score=143.15 Aligned_cols=172 Identities=17% Similarity=0.309 Sum_probs=114.6
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--e---eC--------------CCCceEEe------eeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENN--A---IL--------------PTGGSIYR------GSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~---~~--------------~~~~~~~~------~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|++... . +. ...+.... ...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 88 (223)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence 45688999999999998764 46899998531 1 10 01111111 34799999999
Q ss_pred CCCeEEEEEEecCCC---C--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEe-CCe
Q psy8823 197 EDRGTYYCVAENGVG---K--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIK-EDT 264 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~-~~~ 264 (386)
+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++ ++.
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~ 168 (223)
T 1dee_B 89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNS 168 (223)
T ss_dssp GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred HHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCC
Confidence 999999999998652 1 112344677763 4554433233345689999999999987 777 999999 777
Q ss_pred eeeeecCceeEEeeeeecCceeeeEEEEeeccc--CCCeEEEEEEEcCCCceeeEE
Q psy8823 265 QQVLTNNQHYSISHFATADEFTDTTIRVITIEK--RQYGSYICRAANKLGTSEKTV 318 (386)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~ 318 (386)
. +....... .......+...+.|.|..... +|.|.|+|.|.|..+.....+
T Consensus 169 ~--l~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 169 D--ISSTRGFP-SVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp B--CSCEEECC-CEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred c--cceeEECC-ccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 6 32200000 000111222356788888876 889999999999999877655
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.81 E-value=9e-19 Score=142.63 Aligned_cols=170 Identities=17% Similarity=0.268 Sum_probs=113.7
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----------------CCCceEEe------eeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----------------PTGGSIYR------GSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+++. .... ...+.... ...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (225)
T 1op3_H 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV 88 (225)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 45688999999999998765 6789999863 2110 01111111 35899999999
Q ss_pred CCCeEEEEEEecCCC-----C--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCC
Q psy8823 197 EDRGTYYCVAENGVG-----K--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKED 263 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~ 263 (386)
+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++++
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 168 (225)
T 1op3_H 89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA 168 (225)
T ss_dssp GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTS
T ss_pred hhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCC
Confidence 999999999998753 1 112345677764 3554443333345689999999999986 776 99999998
Q ss_pred eeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 264 TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
.......... . ..........+.|.|.++..+| |.|+|.|.|..+.....
T Consensus 169 ~~~~~~~~~~--~-~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 218 (225)
T 1op3_H 169 LTSGVHTFPA--V-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 218 (225)
T ss_dssp CCTTCEECCC--E-ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEE
T ss_pred CcCCeEecCc--e-eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEE
Confidence 6511110000 0 0111122245679999999888 99999999987665443
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=145.68 Aligned_cols=165 Identities=13% Similarity=0.184 Sum_probs=103.6
Q ss_pred eCCccEEEEEEeeeeCC----CeEEEEEcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCCc-
Q psy8823 148 SEGQPVQLECFAGGHPT----PRISWRRENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGKG- 213 (386)
Q Consensus 148 ~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~- 213 (386)
.+|+.++|.|.+.|.++ ..++|+|++..+..... .......|.|.....+|+|.|+|.+.|..+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~ 95 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 95 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence 68999999999988753 48999999977643211 01112234443444455999999999977652
Q ss_pred eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeE
Q psy8823 214 TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289 (386)
Q Consensus 214 ~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
....+.+ .+..+|.+...+.......|..+.|.|.+.|. |++ .+.|+++|.. +............+......+.
T Consensus 96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--~~~~~~~~~~~~~~gt~~~~s~ 173 (207)
T 1l6x_A 96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQP--ENNYKTTPPVLDSDGSFFLYSK 173 (207)
T ss_dssp EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEE--ECCEEECCCEECTTSCEEEEEE
T ss_pred eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCee--ccCccccCceECCCCCEEEEEE
Confidence 1222222 34556766554433333345669999999985 543 8999999987 4322111111111122223455
Q ss_pred EEEeecccCCCeEEEEEEEcCCCce
Q psy8823 290 IRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 290 L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
|.+.....+|+|.|+|.|.|.....
T Consensus 174 l~i~~~~~~~~g~YtC~a~n~~l~~ 198 (207)
T 1l6x_A 174 LTVDKSRWQQGNVFSCSVMHEALHN 198 (207)
T ss_dssp EEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred EEECHHHcCCCCEEEEEEEcCCcCC
Confidence 6777777788999999999987543
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-19 Score=145.65 Aligned_cols=167 Identities=16% Similarity=0.285 Sum_probs=113.4
Q ss_pred CCceEEEeCCccEEEEEEeeee--CCCeEEEEEcC--eeeC-------C----------CCceEEe------eeEEEECC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGH--PTPRISWRREN--NAIL-------P----------TGGSIYR------GSILKIPQ 193 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~-------~----------~~~~~~~------~~~l~i~~ 193 (386)
.+..+.+.+|++++|.|.+.+. +.+.+.|++.. .... . ..+.... ...|.|.+
T Consensus 12 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 91 (256)
T 3juy_B 12 QSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 91 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECC
Confidence 3566789999999999999773 56789999743 1100 0 0111111 24699999
Q ss_pred CCCCCCeEEEEEEecC-----------CCCceeeeEEEEEEec---------------ceEeeCCCcccccCCCcEEEEE
Q psy8823 194 ITKEDRGTYYCVAENG-----------VGKGTRRNIAVEVEFA---------------PVITVPKPRLGQALQYDMDLEC 247 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~-----------~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C 247 (386)
++.+|+|.|+|.+.+. ..........|.|... |.+...+....+.+|++++|.|
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C 171 (256)
T 3juy_B 92 LRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSC 171 (256)
T ss_dssp CCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEE
T ss_pred CCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEE
Confidence 9999999999999986 1222334556777653 3455566677888999999999
Q ss_pred EEEecCC-CeeEEEeC--Cee-eee-e--------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 248 HVEAYPP-PAIVWIKE--DTQ-QVL-T--------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 248 ~~~g~p~-~~~~W~~~--~~~-~~~-~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.+.+.+. +.+.|++. +.. ..+ . ...++.... ......|.|.+++.+|+|.|+|.|.|..+
T Consensus 172 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 172 RSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG-----SGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp EESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred EECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc-----cCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 9998876 79999983 222 111 1 111222111 11355799999999999999999998654
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=148.99 Aligned_cols=166 Identities=15% Similarity=0.238 Sum_probs=112.4
Q ss_pred EeCCccEEEEEEeeee---CCC-eEEEEEcCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 147 VSEGQPVQLECFAGGH---PTP-RISWRRENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~---~~~-~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+.+|+.++|.|.+.+. |.+ .++|++++..+... .........|.|.+++.+|+|.|+|.+.|..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 4589999999999887 655 89999998765422 1122234579999999999999999999987652
Q ss_pred -eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeee
Q psy8823 214 -TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 214 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
....+.+ .+..+|.+...+.......|+.++|.|.+.|. |++ .+.|+++|.. +............+......+
T Consensus 109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~dgt~~~~s 186 (239)
T 1i1c_A 109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQP--QENYKNTPPTMDTDGSYFLYS 186 (239)
T ss_dssp CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEE--CSSEEECCCEECTTSCEEEEE
T ss_pred CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEE--CCCceecCceECCCCCEEEEE
Confidence 2223322 34567776655444333457899999999984 543 8999999987 432211111111112222345
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.|.|.....+|.|.|+|.|.|.....
T Consensus 187 ~l~v~~~~~~~~g~YtC~v~n~~l~~ 212 (239)
T 1i1c_A 187 KLNVKKETWQQGNTFTCSVLHEGLEN 212 (239)
T ss_dssp EEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred EEEEChhhcCCCCEEEEEEECCCCCC
Confidence 56777666678999999999987653
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-19 Score=144.30 Aligned_cols=183 Identities=16% Similarity=0.263 Sum_probs=113.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCCceeEE--eccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STGSSLII--RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+...|....+.+|++|+|.|.+. .+...+.|+|++.......+.. ..+..... ..+|+.+..+ ..++++|.|.++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v 79 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQEQFSLILELA 79 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC-SSSEEEEEESSC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec-CCCEEEEEEecC
Confidence 34456677799999999999985 4567899999763321111111 11111110 1345555433 256789999999
Q ss_pred CCCCCeEEEEEeEEccc----ceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEE
Q psy8823 104 QETDAGYYRCQVIIGIN----NKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRR 171 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~ 171 (386)
+.+|+|.|+|.+.+..+ ........|.|.. +|.+....+....+.+|+.++|.|.+.+. |.+ .++|++
T Consensus 80 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 159 (238)
T 1bec_A 80 TPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 159 (238)
T ss_dssp CGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred CcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence 99999999999986521 1122334577764 34443322222234579999999999886 544 899999
Q ss_pred cCeeeCCCCce----E-Ee------eeEEEECCCCCCC-CeEEEEEEecCCC
Q psy8823 172 ENNAILPTGGS----I-YR------GSILKIPQITKED-RGTYYCVAENGVG 211 (386)
Q Consensus 172 ~~~~~~~~~~~----~-~~------~~~l~i~~~~~~d-~g~y~C~~~~~~~ 211 (386)
++..+...... . .. ...|.|......| .|.|+|.+.|...
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 99887543211 1 11 2234455444444 6789999999644
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=147.45 Aligned_cols=181 Identities=16% Similarity=0.167 Sum_probs=113.9
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeE---Eecc-ceeeecCCCcceEEEEEccc
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLI---IRDS-RFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~L~i~~~ 103 (386)
...|....+.+|++|+|.|.+.+.+...+.|||.........+....+.... ...+ |+....+.... |.|.++
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~---L~I~~v 81 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE---LRLQVA 81 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC---CEEEEE
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe---EEEccC
Confidence 3345567799999999999988777888999995433221111111111111 1122 66555443322 999999
Q ss_pred CCCCCeEEEEEeEEccc-----ceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEE
Q psy8823 104 QETDAGYYRCQVIIGIN-----NKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWR 170 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~-----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~ 170 (386)
+.+|+|.|+|.+.+..+ ........|.|.. +|.+....+....+..|+.++|.|.+.+ .|++ .++|+
T Consensus 82 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~ 161 (253)
T 3to4_D 82 NMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (253)
T ss_dssp SCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred ChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEE
Confidence 99999999999975432 1222334566653 3332221111111224689999999988 5555 89999
Q ss_pred EcCeeeCCC---------------CceEEeeeEEEECCCCCCC-CeEEEEEEecCCC
Q psy8823 171 RENNAILPT---------------GGSIYRGSILKIPQITKED-RGTYYCVAENGVG 211 (386)
Q Consensus 171 ~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~ 211 (386)
++|..+... +......+.|.|.....+| .|.|+|.+.|...
T Consensus 162 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l 218 (253)
T 3to4_D 162 VNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 218 (253)
T ss_dssp ETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred ECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCC
Confidence 999887542 2222334578888887777 7799999998643
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=137.73 Aligned_cols=147 Identities=13% Similarity=0.147 Sum_probs=106.5
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCC------------CceEE--eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT------------GGSIY--RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~------------~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.+.+.+|++|+|.|.+.+ |.+.+.|++++..+... ++... .+.+|.|.+++.+|+|.|.|.+.+.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 456789999999999854 77899999988654211 11111 3468999999999999999999987
Q ss_pred CCCceeeeEEEEEEecc---eEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCcee
Q psy8823 210 VGKGTRRNIAVEVEFAP---VITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFT 286 (386)
Q Consensus 210 ~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (386)
.+ ...+.|.|..++ .+..... ...|.|.+.+.|.|.+.|++++.. +....
T Consensus 83 ~~---~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~--l~~~~-------------- 135 (171)
T 1ccz_A 83 TD---TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEH--LRSLR-------------- 135 (171)
T ss_dssp CS---CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEE--EEEES--------------
T ss_pred CC---cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEE--CcCCc--------------
Confidence 66 466778886643 2322111 137999999999999999999987 33211
Q ss_pred eeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 287 DTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
...|.+. ..+|.|.|+|.|.|..|..+.++.|
T Consensus 136 ~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 136 QKTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp SSEEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred ceEEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence 1223333 4778999999999999998877665
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=142.85 Aligned_cols=172 Identities=13% Similarity=0.189 Sum_probs=116.9
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEc----------------CeeeCCC---CceEE-----eeeEEEECCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRE----------------NNAILPT---GGSIY-----RGSILKIPQITKE 197 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~----------------~~~~~~~---~~~~~-----~~~~l~i~~~~~~ 197 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+|. +...... .+... ....|.|.+++.+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~ 87 (246)
T 4dzb_B 8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE 87 (246)
T ss_dssp CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG
T ss_pred CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH
Confidence 3456788999999999998888889999982 2222111 11111 1347999999999
Q ss_pred CCeEEEEEEecCCC---CceeeeEEEEEEe------cceEee-CCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCee
Q psy8823 198 DRGTYYCVAENGVG---KGTRRNIAVEVEF------APVITV-PKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQ 265 (386)
Q Consensus 198 d~g~y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~ 265 (386)
|+|.|+|.+.+..+ ........+.|.. +|.+.. .+....+..|+.++|.|.+.|.|++ .+.|++++..
T Consensus 88 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 167 (246)
T 4dzb_B 88 DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE 167 (246)
T ss_dssp GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEE
Confidence 99999999987542 1123445666653 455443 3334445669999999999997665 8999999987
Q ss_pred eeeecCceeEEeee------eecCceeeeEEEEeecccCC-CeEEEEEEEcCCCcee
Q psy8823 266 QVLTNNQHYSISHF------ATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSE 315 (386)
Q Consensus 266 ~~~~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~ 315 (386)
+........... ........+.|.|.....+| +|.|+|.|.|......
T Consensus 168 --l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 168 --VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp --ECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred --CCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 544322211110 01112234568899988888 9999999999876655
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.9e-20 Score=148.06 Aligned_cols=179 Identities=16% Similarity=0.178 Sum_probs=112.8
Q ss_pred ccCCeeeeecccee--eecCCcEEEEEEEeeC---C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcce
Q psy8823 22 QRTPTISYISQEQI--KDIGGTVELKCSVQYA---Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95 (386)
Q Consensus 22 ~~~p~i~~~~~~~~--v~~G~~v~L~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (386)
..+|.+.+.++... +.+|++++|.|.+.+. + .+.|.|+|++..+..... .......++++. ..
T Consensus 7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~----~~~~~~~~~~~~-------~~ 75 (218)
T 2rgs_A 7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT----QTHREDYNSTIR-------VV 75 (218)
T ss_dssp --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEE----EEEEETTTTEEE-------EE
T ss_pred CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCccc----ccccccCCCeEE-------EE
Confidence 45677877766655 7899999999999876 3 367999998854421100 000000011111 23
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCC-eEEEE
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTP-RISWR 170 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~-~v~W~ 170 (386)
.+|.|.+++.+|+|.|+|.+.+..... ....+.+ .+..+|.+......... .+|+.++|.|.+.| .|.+ .++|+
T Consensus 76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~ 154 (218)
T 2rgs_A 76 STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVEWT 154 (218)
T ss_dssp EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHH-hcCCceEEEEEEEeeeCCCcEEEEE
Confidence 489999999999999999999865432 2233322 34455655432222111 25899999999998 4655 89999
Q ss_pred EcCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++|..+..... .......|.+.....+|.|.|+|.+.|....
T Consensus 155 k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 155 SNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp ETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred ECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 99987643211 1112234556665556799999999997654
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.80 E-value=9.2e-19 Score=144.88 Aligned_cols=180 Identities=21% Similarity=0.326 Sum_probs=104.6
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccC-CceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IST-GSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+.+|++|+|.|.+.+.+ ...+.|||.........+. ... +..... ..+|+....+...++++|.|.+
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (257)
T 3bn9_D 6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS 85 (257)
T ss_dssp EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence 34566789999999999998654 5679999976432111111 111 111111 1356666555456678999999
Q ss_pred cCCCCCeEEEEEeEEccc----------c--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC
Q psy8823 103 IQETDAGYYRCQVIIGIN----------N--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP 165 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~ 165 (386)
++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+
T Consensus 86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~-~~~~~g~~v~L~C~~~g~~P~p 164 (257)
T 3bn9_D 86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEP 164 (257)
T ss_dssp CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEEEEBSSC
T ss_pred CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCc-ccccCCCcEEEEEEEeeEECCC
Confidence 999999999999987542 1 122345777764 3444332222 235679999999999886 666
Q ss_pred -eEEEEEcCeeeCC--------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 166 -RISWRRENNAILP--------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 166 -~v~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.++|++++..+.. .++.....+.|.|.+...+| |.|+|.+.|...
T Consensus 165 i~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~ 218 (257)
T 3bn9_D 165 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS 218 (257)
T ss_dssp CEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred cEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence 8999998875311 11122234568888888778 999999999543
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=140.09 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=103.9
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
....+.+|++|+|.|.+. .+.+.|.|++++..+. ....+. .. ..+++..+......+++|.|.+++.+|+|.|
T Consensus 3 ~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~----~~~~~~-~~-~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y 75 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVA----ELENSE-FR-AFSSFKNRVYLDTVSGSLTIYNLTSSDEDEY 75 (171)
T ss_dssp EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEE----EEETTE-EE-ECGGGTTSEEECTTTCCEEECSCCGGGCEEE
T ss_pred cEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEE----EEcCCC-cc-cccccCCcEEEeCCCCeEEECCCChhhCceE
Confidence 345688999999999985 4778899999875321 111111 11 1112222221122345899999999999999
Q ss_pred EEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEE
Q psy8823 112 RCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKI 191 (386)
Q Consensus 112 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i 191 (386)
+|.+.+..+ +..+.|.|..++..+ .+..... ...|.|.+.+.|.+.++|++++..+.... ...|.+
T Consensus 76 ~C~~~n~~~---~~~~~L~V~~~~~~p-----~i~~~~~-~~~L~C~~~~~p~p~i~W~~~~~~l~~~~-----~~~l~~ 141 (171)
T 1ccz_A 76 EMESPNITD---TMKFFLYVLEMVSKP-----MIYWECS-NATLTCEVLEGTDVELKLYQGKEHLRSLR-----QKTMSY 141 (171)
T ss_dssp EEECTTCCS---CEEEEEEEECCCCCC-----EEEEETT-TTEEEEECSSCSSCEEEEEETTEEEEEES-----SSEEEE
T ss_pred EEEEeCCCC---cEEEEEEEECcCCCC-----EEEEecC-CcEEEEEeCCCCCcEEEEEECCEECcCCc-----ceEEEE
Confidence 999975433 667788887653211 1112111 23799999888899999999998764221 123333
Q ss_pred CCCCCCCCeEEEEEEecCCCC
Q psy8823 192 PQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 192 ~~~~~~d~g~y~C~~~~~~~~ 212 (386)
. ...|.|.|+|.|.|..+.
T Consensus 142 ~--~~~~~g~Y~C~a~N~~~~ 160 (171)
T 1ccz_A 142 Q--WTNLRAPFKCKAVNRVSQ 160 (171)
T ss_dssp E--CSCCSSCEEEEEEETTEE
T ss_pred e--ccCCCceEEEEEEcccCc
Confidence 3 367899999999998876
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-17 Score=130.16 Aligned_cols=250 Identities=18% Similarity=0.199 Sum_probs=160.6
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeC-C---CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYA-Q---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~-~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
+.+.+.|....+..|+.++|.|.+.+. | +..++|+|++..+.. ....|.|
T Consensus 3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG--------------------------aT~tLti 56 (304)
T 3shs_A 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN--------------------------NTATLTV 56 (304)
T ss_dssp EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC--------------------------CSSEEEE
T ss_pred cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC--------------------------CcceEEe
Confidence 457777888889999999999998754 4 457999998754210 1127899
Q ss_pred cccCCCCCeEEEEEeEEcccce-eeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEe--e-eeC-----CCeEEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNK-ISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFA--G-GHP-----TPRISWRR 171 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~--~-~~~-----~~~v~W~~ 171 (386)
..+...|+|.|+|.+.+..+.. .+..+.+.....+.+....+....+..|..+.|.+.+ . |.+ ...++|++
T Consensus 57 ~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyK 136 (304)
T 3shs_A 57 ADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK 136 (304)
T ss_dssp SSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEE
T ss_pred eeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEee
Confidence 9999999999999998765433 2333434433333444444566667778899999887 4 344 45899999
Q ss_pred cCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC-CceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEE-
Q psy8823 172 ENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG-KGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHV- 249 (386)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~- 249 (386)
++..+... ..|++...+..++|.|+|++.+..+ ...+....+.+..-+...-...+..+..|+.+.|.-.+
T Consensus 137 ngt~IsgA-------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 209 (304)
T 3shs_A 137 GEDVIDTT-------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVS 209 (304)
T ss_dssp TTEEEESS-------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEE
T ss_pred CCeEccCc-------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEe
Confidence 99876322 2467778888999999999999765 44555666655433333333345567778888887654
Q ss_pred -------EecCCC--eeEEEeC--Ceee--eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 250 -------EAYPPP--AIVWIKE--DTQQ--VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 250 -------~g~p~~--~~~W~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.|.|.. ++.|+.. |+.. .+.......+..+. ...++.|.-..+..+|...|.|.|.-.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 3shs_A 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFS---ITPDGHLFKESATYDDTAKFWCVAKLY 280 (304)
T ss_dssp EECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEE---ECTTSCEEESSCCGGGCEEEEEEEEEE
T ss_pred eccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccce---eCCCcceeecccccccchheeeHHHHH
Confidence 233333 4678743 3220 01111000000000 113456777778889999999998643
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-18 Score=133.05 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=113.6
Q ss_pred eeeeccc--eeeecCCcEEEEEEEeeCCCC--cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 27 ISYISQE--QIKDIGGTVELKCSVQYAQDY--PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 27 i~~~~~~--~~v~~G~~v~L~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.+.++. ..+.+|++++|.|.+ +.+.+ .|+|++.+..+ +. ... ......|.|.+
T Consensus 8 ~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---------~~--------~~~----~~~~~~L~I~~ 65 (210)
T 1gsm_A 8 LQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---------GA--------VQS----DTGRSVLTVRN 65 (210)
T ss_dssp EEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---------CC--------EEE----ESSEEEEEECS
T ss_pred EEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---------Cc--------EEe----cCCccEEEECc
Confidence 4444544 478999999999999 67666 89999955322 11 000 12345899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC----CeEEEEEcCeeeC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT----PRISWRRENNAIL 177 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~----~~v~W~~~~~~~~ 177 (386)
++.+|+|.|.|.+.+.. ...++.+.|.|+.+|......+. ...+|+.+ |.|.+.+. |. +.++|+|++..+.
T Consensus 66 v~~~d~G~Y~C~a~n~~-~~~~~~~~ltV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~ 141 (210)
T 1gsm_A 66 ASLSAAGTRVCVGSCGG-RTFQHTVQLLVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELE 141 (210)
T ss_dssp CCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECT
T ss_pred cCcccCceEEEEEEeCC-CceEEEEEEEEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcc
Confidence 99999999999999764 44678899999998865543222 45578888 99999876 53 3799999998874
Q ss_pred CCCc------------------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 178 PTGG------------------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 178 ~~~~------------------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.... ...-.++|.+.....+|.+.|+|.|.+....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~ 194 (210)
T 1gsm_A 142 GAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPG 194 (210)
T ss_dssp TCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETT
T ss_pred cccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCC
Confidence 3321 0111345666677777778999999986543
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=147.12 Aligned_cols=165 Identities=15% Similarity=0.224 Sum_probs=110.9
Q ss_pred EEEeCCccEEEEEEeeee-CC-C-eEEEEEcCeee-CCCC--------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGH-PT-P-RISWRRENNAI-LPTG--------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~-~~-~-~v~W~~~~~~~-~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.+|+.++|.|.+.+. |. + .++|+++|..+ .... +.......|.|.++..+|+|.|+|.+.|..+.
T Consensus 23 ~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~ 102 (231)
T 2w59_A 23 GELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELP 102 (231)
T ss_dssp HHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred hhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCC
Confidence 345689999999999885 53 4 99999998776 2211 11223457999999999999999999997654
Q ss_pred ceeeeEEEEEE------ecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCceeEE--eee---
Q psy8823 213 GTRRNIAVEVE------FAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQHYSI--SHF--- 279 (386)
Q Consensus 213 ~~~~~~~l~v~------~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~~--~~~--- 279 (386)
. .+.+.|. .+|.+.+..+......+..++|.|.+.|. |+ +.+.|+++|.. +........ ...
T Consensus 103 -~--~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~~ 177 (231)
T 2w59_A 103 -L--PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRA--VPATEFVTTAVLPEERT 177 (231)
T ss_dssp -S--CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEE--CCGGGCEECCCEECCTT
T ss_pred -C--ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEE--CCCcccccCccccCccc
Confidence 2 2233332 45655543332222335579999999986 43 58999999988 433321110 110
Q ss_pred -----ee-cCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 280 -----AT-ADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 280 -----~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.+ ..+...+.|.|.....+|+|.|+|.|.|.....
T Consensus 178 ~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 178 ANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp SCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred ccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 11 222345778899999999999999999987653
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=144.32 Aligned_cols=178 Identities=21% Similarity=0.330 Sum_probs=110.3
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-ccC-CceeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-IST-GSSLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~-~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++...+.+|++|+|.|.+.+. ....+.|++.........+. ... +.... ...+|+....+...++++|.|.++
T Consensus 30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 109 (256)
T 3sob_H 30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSL 109 (256)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCC
Confidence 345678999999999999753 24569999865432211111 111 11111 113566666666667889999999
Q ss_pred CCCCCeEEEEEeEEcc----------cceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-C-CCeE
Q psy8823 104 QETDAGYYRCQVIIGI----------NNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-P-TPRI 167 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~----------~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v 167 (386)
+.+|+|.|.|.+.+.. .........|.|.. +|.+....+ ...+.+|+.++|.|.+.+. | +..+
T Consensus 110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~~~~p~~~~v 188 (256)
T 3sob_H 110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTV 188 (256)
T ss_dssp CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECC-C-----TTEEEEEEEEEEEBSSCCEE
T ss_pred CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECC-CcccccCCcEEEEEEEEEEECCCeEE
Confidence 9999999999987532 01123344566652 333332112 1235679999999999774 4 3479
Q ss_pred EEEEcCeeeCC----------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 168 SWRRENNAILP----------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 168 ~W~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.| ++..+.. .+......+.|.|.+...+| |.|+|.+.|....
T Consensus 189 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~ 240 (256)
T 3sob_H 189 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 240 (256)
T ss_dssp EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred EE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCC
Confidence 99 5444321 11222334579999999999 9999999997654
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=143.69 Aligned_cols=181 Identities=16% Similarity=0.245 Sum_probs=116.5
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cccC-CceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIST-GSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+....+.+|++|+|.|.+.+.+ ...+.|+|+........+ .... +..... ..+|+.+..+...++.+|.|.+
T Consensus 12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 91 (261)
T 2xqy_G 12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS 91 (261)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence 35667799999999999998765 567999997532211111 1111 111111 1346655544445678999999
Q ss_pred cCCCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCe
Q psy8823 103 IQETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENN 174 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~ 174 (386)
++.+|+|.|.|.+.+.... .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |.+ .+.|++++.
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~ 170 (261)
T 2xqy_G 92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 170 (261)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCC-C--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCc-cccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence 9999999999999864321 122345777764 34333222221 25679999999999875 665 899999886
Q ss_pred eeCCC--C-----ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 175 AILPT--G-----GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 175 ~~~~~--~-----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.+... . ......+.|.|.+...+| |.|+|.+.|....
T Consensus 171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 53210 0 122235679999988888 9999999985543
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=142.53 Aligned_cols=172 Identities=18% Similarity=0.313 Sum_probs=113.0
Q ss_pred eEEEeCCccEEEEEEeeeeCC----CeEEEEEcC--eee---C-------------CCCceEE------eeeEEEECCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPT----PRISWRREN--NAI---L-------------PTGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~----~~v~W~~~~--~~~---~-------------~~~~~~~------~~~~l~i~~~~ 195 (386)
.+.+.+|++++|.|.+.+.+. +.+.|+++. ... . ...+... ....|.|.+++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 88 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD 88 (228)
T ss_dssp CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence 346889999999999987764 789999853 211 0 0111111 13689999999
Q ss_pred CCCCeEEEEEEecCCC------C--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEe
Q psy8823 196 KEDRGTYYCVAENGVG------K--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIK 261 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~ 261 (386)
.+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++
T Consensus 89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~ 168 (228)
T 3bae_H 89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS 168 (228)
T ss_dssp GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred cccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEee
Confidence 9999999999988653 1 111235666763 4555543333445789999999999986 777 999999
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
++....... ..... ........+.|.|.++..+| |.|+|.|.|..|.......+
T Consensus 169 ~~~~~~~~~--~~~~~--~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~ 222 (228)
T 3bae_H 169 GSLSSGVHT--FPAVL--QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI 222 (228)
T ss_dssp GTCCTTEEE--EEEEE--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred CCcccCceE--cCcee--CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence 886521111 00111 01112245679999988866 99999999999887665543
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-18 Score=143.65 Aligned_cols=175 Identities=18% Similarity=0.318 Sum_probs=117.2
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--eeC-----------------CCCceEEe------eeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRRENN--AIL-----------------PTGGSIYR------GSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|++++. ... ...+.... ...|.|.+++
T Consensus 34 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 113 (282)
T 1qok_A 34 GAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLT 113 (282)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCC
Confidence 356788999999999998764 57899999641 110 01111111 2579999999
Q ss_pred CCCCeEEEEEEecCCC---C-ceeeeEEEEEEecc---------------eEeeCCCcccccCCCcEEEEEEEEecCCCe
Q psy8823 196 KEDRGTYYCVAENGVG---K-GTRRNIAVEVEFAP---------------VITVPKPRLGQALQYDMDLECHVEAYPPPA 256 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~---~-~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~ 256 (386)
.+|+|.|+|.+.|..+ . .......|.|...| .+...+....+.+|++++|.|.+.+.| +.
T Consensus 114 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~ 192 (282)
T 1qok_A 114 SEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SY 192 (282)
T ss_dssp GGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SC
T ss_pred hhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ce
Confidence 9999999999998765 1 11234467776543 234445556788999999999999998 89
Q ss_pred eEEEe--CCeeee-ee-c--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce-eeEEEEEEE
Q psy8823 257 IVWIK--EDTQQV-LT-N--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS-EKTVELFES 323 (386)
Q Consensus 257 ~~W~~--~~~~~~-~~-~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 323 (386)
+.|++ ++.... +. . ..++.... ......|.|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus 193 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 193 MHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG-----SGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp CEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEECCCCCcEEEEEEecCCCCcccCCeEEec-----CCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence 99999 554321 10 0 12222110 1135679999999999999999999864322 334566664
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=141.00 Aligned_cols=166 Identities=16% Similarity=0.216 Sum_probs=112.6
Q ss_pred CceEEEeCCccEEEEEEeeeeC----CCeEEEEEcC--eee---CC---------CCceEE----eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP----TPRISWRREN--NAI---LP---------TGGSIY----RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~--~~~---~~---------~~~~~~----~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++. ... .. ..+... ....|.|.+++.+|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 87 (240)
T 1moe_A 8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV 87 (240)
T ss_dssp CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence 4456788999999999998887 6789999963 211 00 011111 123799999999999
Q ss_pred eEEEEEEecCCCCceeeeEEEEEEecc------eEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCC--eee-ee
Q psy8823 200 GTYYCVAENGVGKGTRRNIAVEVEFAP------VITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKED--TQQ-VL 268 (386)
Q Consensus 200 g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~--~~~-~~ 268 (386)
|.|+|.+.|..+........|.|..++ .....+....+.+|++++|.|.+.+.|. +.+.|+++. ... .+
T Consensus 88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~ 167 (240)
T 1moe_A 88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWI 167 (240)
T ss_dssp EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE
T ss_pred EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEE
Confidence 999999998765433445667776643 2333455567889999999999999874 589999962 221 01
Q ss_pred ---e-----------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 269 ---T-----------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 269 ---~-----------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
. ...++.... ........|.|.+++.+|+|.|+|.|.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 168 GRIDPANGNSKYVPKFQGKATITA---DTSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp EEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred EEEcccCCccccCccccccEEEEE---cccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 0 011121111 01123467999999999999999999853
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-18 Score=138.76 Aligned_cols=177 Identities=16% Similarity=0.269 Sum_probs=111.4
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--ee---eC-------------CCCceEEe------eeEEEECCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NA---IL-------------PTGGSIYR------GSILKIPQITKE 197 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~-------------~~~~~~~~------~~~l~i~~~~~~ 197 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|++.. .. +. ...+.... ...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (232)
T 1dn0_B 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (232)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence 35688999999999997754 5689999853 11 10 01111111 238999999999
Q ss_pred CCeEEEEEEec--CCCC---ceeeeEEEEEEe----cceEeeCCCcccccCC-CcEEEEEEEEec-CCC-eeEEEe-CCe
Q psy8823 198 DRGTYYCVAEN--GVGK---GTRRNIAVEVEF----APVITVPKPRLGQALQ-YDMDLECHVEAY-PPP-AIVWIK-EDT 264 (386)
Q Consensus 198 d~g~y~C~~~~--~~~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~g-~~~~l~C~~~g~-p~~-~~~W~~-~~~ 264 (386)
|+|.|.|.+.+ ..+. .......|.|.. +|.+....+...+..| +.++|.|.+.|. |.+ .+.|++ ++.
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~ 168 (232)
T 1dn0_B 89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNS 168 (232)
T ss_dssp GCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred cCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCC
Confidence 99999999984 2111 122345677754 3444432222234577 999999999886 776 999999 877
Q ss_pred eeeeecCceeEEeeeeecCceeeeEEEEeeccc--CCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 265 QQVLTNNQHYSISHFATADEFTDTTIRVITIEK--RQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
. +....... .......+...+.|.|.+... +|.|.|+|.|.|..+.......+.+.
T Consensus 169 ~--l~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 169 D--ISSTRGFP-SVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp E--ECCEEECC-CEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred c--eeeEEECC-ccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence 6 32210000 000111222356789988887 88999999999999988777766554
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=141.75 Aligned_cols=166 Identities=14% Similarity=0.252 Sum_probs=109.8
Q ss_pred CceEEEeCCccEEEEEEeeeeC-----CCeEEEEEcC--eee---CC---------CCceEE----eeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-----TPRISWRREN--NAI---LP---------TGGSIY----RGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~---~~---------~~~~~~----~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++. ... .. ..+... ....|.|.+++.+|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 87 (247)
T 1svz_A 8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED 87 (247)
T ss_dssp CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence 3556788999999999998877 6789999853 111 00 111111 13479999999999
Q ss_pred CeEEEEEEecCCCCceeeeEEEEEEecc-------------eEeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCC
Q psy8823 199 RGTYYCVAENGVGKGTRRNIAVEVEFAP-------------VITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKED 263 (386)
Q Consensus 199 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~ 263 (386)
+|.|+|.+.|..+........|.|..++ .....++...+.+|++++|.|.+.+.+ .+.+.|++++
T Consensus 88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~ 167 (247)
T 1svz_A 88 LGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQA 167 (247)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred CEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeC
Confidence 9999999998754323334566665542 122233344588999999999999875 4689999863
Q ss_pred --eee-eee---c-----------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 264 --TQQ-VLT---N-----------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 264 --~~~-~~~---~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
... .+. . ..++..... .......|.|.+++.+|+|.|+|.|.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 168 PGGDLKYVGWINTETDEPTFADDFKGRFAFSLD---TSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp TTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred CCCCcEEEEEEEcCCCccccCccccCcEEEEEe---cCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 211 010 0 112221110 1123568999999999999999999995
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-19 Score=141.54 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=110.7
Q ss_pred Ceeeeeccc-ee-eecCCcEEEEEEEeeCC----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 25 PTISYISQE-QI-KDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 25 p~i~~~~~~-~~-v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
|.+.+.++. .. +.+|++++|.|.+.+.+ ...|.|+|++..+...... ......++++. ....|
T Consensus 2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~----~~~~~~~~~~~-------~~~~L 70 (207)
T 2vol_A 2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTK----PREEQFNSTFR-------SVSEL 70 (207)
T ss_dssp CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEE----CCCEETTTEEE-------EEEEE
T ss_pred CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccC----CCcCcCCCcEE-------EEEEE
Confidence 445554443 34 78999999999998763 3479999988543211000 00001111221 23479
Q ss_pred EEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRREN 173 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~ 173 (386)
.|.+++.+|+|.|+|.+.+..+.. ....+.+ .+..+|.+........ ..+|+.++|.|.+.|. |+ +.++|+++|
T Consensus 71 ~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g 149 (207)
T 2vol_A 71 PIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNG 149 (207)
T ss_dssp ECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred EEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECC
Confidence 999999999999999999765432 2333433 4455665543222211 1258999999999885 44 389999999
Q ss_pred eeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+..... .......|.+.....+|.|.|+|.+.|....
T Consensus 150 ~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 150 QPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred EeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 87643211 1112234667766667899999999997654
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-18 Score=137.31 Aligned_cols=178 Identities=22% Similarity=0.261 Sum_probs=111.0
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccc-cCCceeE---EeccceeeecCCCcceEEEEEcccC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPI-STGSSLI---IRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|....+.+|++|+|.|.+.+.+ ...+.|+|+........+.. ..+.... ...+|+.+..+...++++|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 5566789999999999998654 46799999753221111111 1111000 0134666554444567899999999
Q ss_pred CCCCeEEEEEeEEcccc--eeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCeee
Q psy8823 105 ETDAGYYRCQVIIGINN--KISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNAI 176 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~ 176 (386)
.+|+|.|.|.+.+..+. .....+.|.|.. +|.+....+.. .+.+|+.++|.|.+.+. |.+ .++|++++..+
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~ 165 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGC-GDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS 165 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCS-SCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCCh-hhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence 99999999999865311 122345677763 33333211111 24679999999999886 777 99999988653
Q ss_pred CCCC-------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 177 LPTG-------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 177 ~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.... ........|. ....+| |.|+|.+.|..+.
T Consensus 166 ~~~~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~ 205 (215)
T 1c5d_H 166 DVHTFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASS 205 (215)
T ss_dssp SCCBCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGT
T ss_pred ceEecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCC
Confidence 2111 1111122344 444456 9999999997765
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-18 Score=141.10 Aligned_cols=165 Identities=15% Similarity=0.233 Sum_probs=108.9
Q ss_pred ceEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--ee---C---------CCCceEE----eeeEEEECCCCCCCCeEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGH--PTPRISWRRENN--AI---L---------PTGGSIY----RGSILKIPQITKEDRGTY 202 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~~---~---------~~~~~~~----~~~~l~i~~~~~~d~g~y 202 (386)
..+.+.+|++++|.|.+.+. +.+.+.|+|+.. .. . ...+... ....|.|.+++.+|+|.|
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y 89 (256)
T 3ux9_B 10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY 89 (256)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence 45678999999999999876 678899998531 11 0 0011111 134799999999999999
Q ss_pred EEEEecCCCC--ceeeeEEEEEEecc---------------------eEeeCCCcccccCCCcEEEEEEEEecC--CCee
Q psy8823 203 YCVAENGVGK--GTRRNIAVEVEFAP---------------------VITVPKPRLGQALQYDMDLECHVEAYP--PPAI 257 (386)
Q Consensus 203 ~C~~~~~~~~--~~~~~~~l~v~~~p---------------------~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~ 257 (386)
+|.+.+..+. .......|.|..++ .+.. +....+.+|++++|.|.+.+.+ .+.+
T Consensus 90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v 168 (256)
T 3ux9_B 90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSSYAM 168 (256)
T ss_dssp EEEEEETTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred EEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCcccccEE
Confidence 9999986542 12234566666544 2222 2334578899999999999877 6799
Q ss_pred EEEeCC--eeee-e---ec-----------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 258 VWIKED--TQQV-L---TN-----------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 258 ~W~~~~--~~~~-~---~~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.|+++. .... + .. ..++..... .......|.|.+++.+|+|.|+|.|.|..
T Consensus 169 ~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 169 SWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD---NSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCCcEEEEEEccCCCceecCccccceEEEEec---CCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 999863 2210 0 00 012222111 11235579999999999999999999974
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=133.67 Aligned_cols=150 Identities=20% Similarity=0.297 Sum_probs=107.1
Q ss_pred CceEEEeCCccEEEEEEeee-eCCCeEEEEEc-CeeeC------------CC--CceEE--eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGG-HPTPRISWRRE-NNAIL------------PT--GGSIY--RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~-~~~~~------------~~--~~~~~--~~~~l~i~~~~~~d~g~y~ 203 (386)
...+.+.+|++++|.|.+.+ .+.+.+.|+++ +..+. .. .+... .+.+|.|.+++.+|+|.|+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 34567899999999998844 34678999994 32221 00 11111 3467999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEecc---eEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeee
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFAP---VITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 279 (386)
|.+.+.. .....+.|.|..++ .+.. .+..++|.|.+ .| |.|.+.|++++.. +..
T Consensus 86 C~v~~~~--~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~--l~~--------- 143 (180)
T 2dru_A 86 MRMLHET--EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEH--LRS--------- 143 (180)
T ss_dssp EEEESSS--EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEE--EEE---------
T ss_pred EEEEcCC--eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeE--CcC---------
Confidence 9998765 35667788886542 2221 34569999999 56 8999999999987 320
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
....+|.+.. .+|+|.|+|.|.|..+....+..+
T Consensus 144 -----~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 144 -----LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp -----ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred -----CCCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 0234455533 789999999999999988776554
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=138.29 Aligned_cols=169 Identities=17% Similarity=0.298 Sum_probs=109.5
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCee--e------CC-------------CCceEE------eeeEEEECCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENNA--I------LP-------------TGGSIY------RGSILKIPQI 194 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~--~------~~-------------~~~~~~------~~~~l~i~~~ 194 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|++.... . .. ..+... ....|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 88 (221)
T 3m8o_H 9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL 88 (221)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence 45688999999999997643 568999984311 0 00 011111 1236999999
Q ss_pred CCCCCeEEEEEEecCCC-CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cCC-C-eeEEEeCCeee
Q psy8823 195 TKEDRGTYYCVAENGVG-KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YPP-P-AIVWIKEDTQQ 266 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~-~-~~~W~~~~~~~ 266 (386)
+.+|+|.|.|.+.+... ........+.|. .+|.+....+... ..|+.++|.|.+.+ .|. + .+.|++++..+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~ 167 (221)
T 3m8o_H 89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGV 167 (221)
T ss_dssp CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTC
T ss_pred CHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEEC
Confidence 99999999999988641 212334456664 2444442222222 68999999999998 776 4 89999998763
Q ss_pred eeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 267 VLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
....... ............+.|.|..+..+|+|.|+|.|.|..+...
T Consensus 168 ~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 168 TARNFPP--SQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ 214 (221)
T ss_dssp EEEECCC--EECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred ceEEcCc--eeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence 2111100 0001112222356799999999999999999999986543
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=142.02 Aligned_cols=209 Identities=15% Similarity=0.266 Sum_probs=110.0
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEc-CeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRE-NNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
....+.+|+++.|.|.+....+..+.|.-. ++......+ .....+.+.+++.+ |.|.|.+.... ....+.+.+.
T Consensus 7 ~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g--~~~~~~~l~~v~~~--~~y~C~~~~~~-~~~~~~v~l~ 81 (291)
T 1mq8_A 7 SKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG--NNRKVYELSNVQED--SQPMCYSNCPD-GQSTAKTFLT 81 (291)
T ss_dssp SEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSC--SSEEEEEEESCCSC--CCCEEEEECSS-CEEEEECEEE
T ss_pred CccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCC--CceEEEEEEecccC--CeEEEEEEcCC-ccEEEEEEEE
Confidence 356789999999999996544445888631 111110111 11224788888743 46999997543 4467788899
Q ss_pred EEecceEe-eCCCcccccCCCcEEEEEEEEecCCC---eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 222 VEFAPVIT-VPKPRLGQALQYDMDLECHVEAYPPP---AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 222 v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
|..+|... +......+.+|+.++|.|.+.|.+++ +++|++++.. +..... . .......|.+.....
T Consensus 82 V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~--l~~~~~------~--~~~~~~~l~~~~~~~ 151 (291)
T 1mq8_A 82 VYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE--LKREPA------V--GEPAEVTTTVLVRRD 151 (291)
T ss_dssp ECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSE--EEEEEC------C--BTTEEEEEECCCSSS
T ss_pred EecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEE--eecccC------C--CCCceEEEEeeeeec
Confidence 98887533 33333558889999999999875443 5899999977 332210 0 112356678888888
Q ss_pred CCCeEEEEEEEcCCCc--------eeeEEEEEEEecCCCCCC-CCCceeecCcceeeeEEecCC-C-----CCcccccce
Q psy8823 298 RQYGSYICRAANKLGT--------SEKTVELFESIIPVCPPQ-TQPSELLPLRNVNMAVIFAEQ-P-----TSWEPQRKQ 362 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~g~--------~~~~~~l~v~~~p~~~~~-~~~~~~~~~~~~~~~c~~~~~-p-----~~W~~~~~~ 362 (386)
+|++.|+|+|.|..+. .++...|.|.+.|...+. ..+..+..|+.++|+|.+.|. | +.|.++|+.
T Consensus 152 D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~ 231 (291)
T 1mq8_A 152 HHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR 231 (291)
T ss_dssp CSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------------------
T ss_pred cCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEe
Confidence 8888999999998663 345677888877654332 223356689999999999886 3 689999999
Q ss_pred eeec
Q psy8823 363 LNCS 366 (386)
Q Consensus 363 l~~~ 366 (386)
+...
T Consensus 232 l~~~ 235 (291)
T 1mq8_A 232 LNPT 235 (291)
T ss_dssp ----
T ss_pred cCce
Confidence 8754
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=137.21 Aligned_cols=177 Identities=18% Similarity=0.232 Sum_probs=115.4
Q ss_pred CCceEEEeCCccEEEEEEeeee--CCCeEEEEEcC--ee---eC--------------CCCceEE------eeeEEEECC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGH--PTPRISWRREN--NA---IL--------------PTGGSIY------RGSILKIPQ 193 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~---~~--------------~~~~~~~------~~~~l~i~~ 193 (386)
.+..+.+.+|++++|.|.+.+. +.+.+.|+|.. .. +. ...+... ....|.|.+
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (242)
T 1hxm_B 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN 86 (242)
T ss_dssp CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence 3456788999999999999775 56789999853 11 10 0111111 145799999
Q ss_pred CCCCCCeEEEEEEecCCC-C-----ceeeeEEEEEEec-------ceEeeC-CCcccccCCCcEEEEEEEEec-CC-Cee
Q psy8823 194 ITKEDRGTYYCVAENGVG-K-----GTRRNIAVEVEFA-------PVITVP-KPRLGQALQYDMDLECHVEAY-PP-PAI 257 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~-~-----~~~~~~~l~v~~~-------p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~-~~~ 257 (386)
++.+|+|.|.|.+.+... . .......|.|... |...+. +....+..|+.++|.|.+.|. |. +.+
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v 166 (242)
T 1hxm_B 87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKI 166 (242)
T ss_dssp CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEE
T ss_pred CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEE
Confidence 999999999999987531 1 1123456777653 333222 223345579999999999986 64 589
Q ss_pred EEEeCCe-eeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 258 VWIKEDT-QQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 258 ~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.|++++. . +......... .....+...+.|.|.++.. | |.|+|.|.|..+....+..+.+
T Consensus 167 ~W~~~~~~~--l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 167 HWEEKKSNT--ILGSQEGNTM-KTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp EEEESSSCC--CCCCEECCCE-ECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred EEEcCCCEe--ecCcccccee-cCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 9999987 4 2111100010 1112223456788888775 5 9999999999998766666544
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=142.06 Aligned_cols=184 Identities=16% Similarity=0.264 Sum_probs=114.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccccc-CCceeE--EeccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIS-TGSSLI--IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+...|....+.+|++|+|.|.+. .+...+.|+++........+... ...... ...+|+....+ ..++++|.|.++
T Consensus 6 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v 83 (252)
T 1oga_E 6 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE-KKESFPLTVTSA 83 (252)
T ss_dssp EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS-STTBCCEEECSC
T ss_pred ceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec-CCCEEEEEECcC
Confidence 44556677799999999999985 45678999997533211111111 111111 01345555432 245668999999
Q ss_pred CCCCCeEEEEEeEEcc--cceeeeEEEEEEec------CCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcC
Q psy8823 104 QETDAGYYRCQVIIGI--NNKISAEVDLQVRR------PPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRREN 173 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~ 173 (386)
+.+|+|.|+|.+.+.. .........|.|.. +|.+....+....+.+|+.++|.|.+.+. |. +.++|++++
T Consensus 84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g 163 (252)
T 1oga_E 84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 163 (252)
T ss_dssp CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence 9999999999998641 11112234566653 34333222222223468899999999886 54 489999999
Q ss_pred eeeCCCCc---------------eEEeeeEEEECCCCCC-CCeEEEEEEecCCCC
Q psy8823 174 NAILPTGG---------------SIYRGSILKIPQITKE-DRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~---------------~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~ 212 (386)
..+..... .......|.|.+.... |.|.|+|.+.|....
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 164 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp EEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 87654311 1122345778776654 577999999997543
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=138.05 Aligned_cols=166 Identities=14% Similarity=0.240 Sum_probs=111.2
Q ss_pred CceEEEeCCccEEEEEEeeeeC------CCeEEEEEcC--eee---C---------CCCceEE----eeeEEEECCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP------TPRISWRREN--NAI---L---------PTGGSIY----RGSILKIPQITKE 197 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~------~~~v~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~ 197 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++. ..+ . ...+... ....|.|.+++.+
T Consensus 12 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~ 91 (264)
T 2gjj_A 12 PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE 91 (264)
T ss_dssp CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence 4556789999999999998776 5789999853 211 0 0111111 1348999999999
Q ss_pred CCeEEEEEEecCCCCceeeeEEEEEEecc------------------eE-eeCCCcccccCCCcEEEEEEEEecCC--Ce
Q psy8823 198 DRGTYYCVAENGVGKGTRRNIAVEVEFAP------------------VI-TVPKPRLGQALQYDMDLECHVEAYPP--PA 256 (386)
Q Consensus 198 d~g~y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~-~~~~~~~~~~~g~~~~l~C~~~g~p~--~~ 256 (386)
|+|.|.|.+.+..+........|.|..+| .+ ...++...+.+|++++|.|.+.+.+. +.
T Consensus 92 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 171 (264)
T 2gjj_A 92 DLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYF 171 (264)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred HCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeE
Confidence 99999999998654323334567776653 11 12233346889999999999998874 78
Q ss_pred eEEEeCC--eee-eee---c-----------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 257 IVWIKED--TQQ-VLT---N-----------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 257 ~~W~~~~--~~~-~~~---~-----------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+.|+++. ... .+. . ..++.+.. . .......|.|.+++.+|+|.|+|.|.|.
T Consensus 172 v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 172 INWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTV--D-TSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEE--E-TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEE--c-CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 9999863 211 111 0 11121110 0 1123568999999999999999999995
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=136.92 Aligned_cols=172 Identities=13% Similarity=0.200 Sum_probs=113.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--------------eeCC---CCceEE-----eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--------------AILP---TGGSIY-----RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--------------~~~~---~~~~~~-----~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|.+.+ +.+.+.|+|... .... ..+... ....|.|.+++.+|+
T Consensus 9 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 87 (240)
T 3q5y_A 9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS 87 (240)
T ss_dssp CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred cceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHC
Confidence 34567899999999999876 677899998321 1000 011111 134799999999999
Q ss_pred eEEEEEEec--CCCCceeeeEEEEEE------ecceEee-CCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeeee
Q psy8823 200 GTYYCVAEN--GVGKGTRRNIAVEVE------FAPVITV-PKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQVL 268 (386)
Q Consensus 200 g~y~C~~~~--~~~~~~~~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~~ 268 (386)
|.|+|.+.+ ...........+.|. .+|.+.. .+....+..|+.++|.|.+.| .|++ .+.|++++.. +
T Consensus 88 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~--l 165 (240)
T 3q5y_A 88 AMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE--V 165 (240)
T ss_dssp EEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE--E
T ss_pred EEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEE--C
Confidence 999999983 222223344566665 3455543 333345566899999999998 5656 7999999987 4
Q ss_pred ecCceeEE--eeeeecCceeeeEEEEeecccCC-CeEEEEEEEcCCCceee
Q psy8823 269 TNNQHYSI--SHFATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSEK 316 (386)
Q Consensus 269 ~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~ 316 (386)
........ ...........+.|.|.....+| +|.|+|.|.|.......
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~~ 216 (240)
T 3q5y_A 166 HSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEED 216 (240)
T ss_dssp CTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred cCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCcc
Confidence 43322210 11111112235669999999888 77999999998765544
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=138.66 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=114.5
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee------------CCC----CceEE-----eeeEEEECCCCCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI------------LPT----GGSIY-----RGSILKIPQITKE 197 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~------------~~~----~~~~~-----~~~~l~i~~~~~~ 197 (386)
.+..+.+.+|++++|.|.+. .+.+.+.|+|.. ... ... .+... ....|.|.+++.+
T Consensus 32 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 110 (268)
T 3pl6_D 32 TPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERG 110 (268)
T ss_dssp CCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGG
T ss_pred CCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcc
Confidence 34567789999999999986 467789999832 110 000 11111 1457999999999
Q ss_pred CCeEEEEEEecCC-CCceeeeEEEEEEe------cceEee-CCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeee
Q psy8823 198 DRGTYYCVAENGV-GKGTRRNIAVEVEF------APVITV-PKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQV 267 (386)
Q Consensus 198 d~g~y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~ 267 (386)
|+|.|+|.+.+.. .........+.|.. +|.+.. .+....+..|+.++|.|.+.|.+++ .+.|+++|..
T Consensus 111 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~-- 188 (268)
T 3pl6_D 111 DSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE-- 188 (268)
T ss_dssp GCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSE--
T ss_pred cCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEE--
Confidence 9999999999742 22233445666664 455443 3334445569999999999986654 8999999887
Q ss_pred eecCceeEEee------eeecCceeeeEEEEeecccCC-CeEEEEEEEcCCCceee
Q psy8823 268 LTNNQHYSISH------FATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSEK 316 (386)
Q Consensus 268 ~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~ 316 (386)
+.......... .........+.|.|.....+| +|.|+|.|.|.......
T Consensus 189 l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~~ 244 (268)
T 3pl6_D 189 VHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEND 244 (268)
T ss_dssp ECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred CCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCCc
Confidence 44332211000 011222234678888888887 99999999998765544
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-18 Score=140.61 Aligned_cols=166 Identities=17% Similarity=0.290 Sum_probs=106.9
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee---CCCC--------------ce------EEeeeEEEECCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI---LPTG--------------GS------IYRGSILKIPQITK 196 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~---~~~~--------------~~------~~~~~~l~i~~~~~ 196 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|++.. ... .... .. ......|.|.+++.
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 88 (259)
T 3omz_A 9 TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIE 88 (259)
T ss_dssp --CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCG
T ss_pred CceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCc
Confidence 45677899999999999988888899999832 110 0000 00 01234699999999
Q ss_pred CCCeEEEEEEecCCCC--ceeeeEEEEEEec-----------------ceEeeCCCcccccCCCcEEEEEEEEec-CCCe
Q psy8823 197 EDRGTYYCVAENGVGK--GTRRNIAVEVEFA-----------------PVITVPKPRLGQALQYDMDLECHVEAY-PPPA 256 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~~--~~~~~~~l~v~~~-----------------p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~ 256 (386)
+|+|.|+|.+.+..+. .......|.|... |.+...+....+.+|++++|.|.+.+. |.+.
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~ 168 (259)
T 3omz_A 89 NDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYY 168 (259)
T ss_dssp GGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCE
T ss_pred ccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCce
Confidence 9999999999987552 2334456666552 455556666788899999999998875 7789
Q ss_pred eEEEeCCe--ee-eeec---------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 257 IVWIKEDT--QQ-VLTN---------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 257 ~~W~~~~~--~~-~~~~---------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+.|++... .. .+.. ..++... .........|.|.+++.+|+|.|.|.+.+.
T Consensus 169 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 169 IFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVN---FKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp EEEEEECTTCCEEEEEEEETTSCCCEETTEEEC---CBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred EEEeeeCCCCCcEEEEEECCcCCcccCCeEEEE---EcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 99998542 10 0100 0111110 001123467999999999999999999864
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=144.34 Aligned_cols=175 Identities=17% Similarity=0.289 Sum_probs=114.2
Q ss_pred eEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e--eC-----C----------CCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGH--PTPRISWRRENN--A--IL-----P----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~--~~-----~----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+. +...+.|++... . .. . .++... ....|.|.+++.
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (253)
T 3liz_H 9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS 88 (253)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence 4568899999999999763 356799998531 1 00 0 011111 133599999999
Q ss_pred CCCeEEEEEEecCC---CCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeeee
Q psy8823 197 EDRGTYYCVAENGV---GKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQV 267 (386)
Q Consensus 197 ~d~g~y~C~~~~~~---~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~~ 267 (386)
+|+|.|.|.+.+.. .........|.|. .+|.+........+..|+.++|.|.+.| +|.+ .+.|++++....
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~ 168 (253)
T 3liz_H 89 EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 168 (253)
T ss_dssp GGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred hhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecc
Confidence 99999999998753 1112333466665 4555554444445667999999999998 6766 899999987421
Q ss_pred eecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 268 LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
........ ....+...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus 169 ~~~~~~~~----~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 169 VHTFPAVL----QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp EEECCCEE----ETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred eEeCCccc----cCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 11111100 00122245789999999999 99999999999988877777655
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-18 Score=142.90 Aligned_cols=179 Identities=16% Similarity=0.260 Sum_probs=115.4
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--ee---C--------------CCCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENN--AI---L--------------PTGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~~---~--------------~~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+++.. .. . ...+... ....|.|.+++.
T Consensus 31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 110 (291)
T 2gki_A 31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS 110 (291)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999998765 57899999631 11 0 0011111 135799999999
Q ss_pred CCCeEEEEEEecCC-CC---ceeeeEEEEEEe----------------cceEeeCCCcccccCCCcEEEEEEEEecCCC-
Q psy8823 197 EDRGTYYCVAENGV-GK---GTRRNIAVEVEF----------------APVITVPKPRLGQALQYDMDLECHVEAYPPP- 255 (386)
Q Consensus 197 ~d~g~y~C~~~~~~-~~---~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~- 255 (386)
+|+|.|+|.+.+.. +. .......|.|.. ++.+...+....+.+|++++|.|.+.+.|.+
T Consensus 111 ~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~ 190 (291)
T 2gki_A 111 EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNS 190 (291)
T ss_dssp GGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEET
T ss_pred HHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccc
Confidence 99999999999864 11 111234666655 2234444555678899999999999888765
Q ss_pred -----eeEEEeCC--ee-eeee-c--------CceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee-eE
Q psy8823 256 -----AIVWIKED--TQ-QVLT-N--------NQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE-KT 317 (386)
Q Consensus 256 -----~~~W~~~~--~~-~~~~-~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~ 317 (386)
.+.|+++. .. ..+. . ..++.... ......|.|.+++.+|+|.|+|.|.|.....- .-
T Consensus 191 ~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~g 265 (291)
T 2gki_A 191 RTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG-----SGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSG 265 (291)
T ss_dssp TTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred cccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe-----cCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCC
Confidence 89999963 21 1111 1 11222110 11346899999999999999999999643221 23
Q ss_pred EEEEEEecCC
Q psy8823 318 VELFESIIPV 327 (386)
Q Consensus 318 ~~l~v~~~p~ 327 (386)
..|.|+..+.
T Consensus 266 t~l~v~~~~~ 275 (291)
T 2gki_A 266 TKLEIKHHHH 275 (291)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEeeEc
Confidence 4555554443
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-17 Score=135.39 Aligned_cols=171 Identities=14% Similarity=0.195 Sum_probs=112.9
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEc--------------CeeeCCC----CceEE-----eeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRE--------------NNAILPT----GGSIY-----RGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--------------~~~~~~~----~~~~~-----~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++++|.| ..+.+.+.+.|+|. +...... .+... ....|.|.+++.+|
T Consensus 9 p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D 87 (245)
T 4ei6_B 9 PSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALED 87 (245)
T ss_dssp CSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGG
T ss_pred CceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhH
Confidence 3456788999999999 65677889999982 1111111 11111 13479999999999
Q ss_pred CeEEEEEEecCC---CCceeeeEEEEEE------ecceEee-CCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeee
Q psy8823 199 RGTYYCVAENGV---GKGTRRNIAVEVE------FAPVITV-PKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQ 266 (386)
Q Consensus 199 ~g~y~C~~~~~~---~~~~~~~~~l~v~------~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~ 266 (386)
+|.|.|.+.+.. .........+.|. .+|.+.. .+....+..|+.++|.|.+.|. |++ .+.|+++|..
T Consensus 88 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~- 166 (245)
T 4ei6_B 88 SAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE- 166 (245)
T ss_dssp CEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE-
T ss_pred CEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEE-
Confidence 999999998532 2223344566665 3555443 3334445669999999999984 445 8999999987
Q ss_pred eeecCceeEEeee------eecCceeeeEEEEeecccCC-CeEEEEEEEcCCCcee
Q psy8823 267 VLTNNQHYSISHF------ATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSE 315 (386)
Q Consensus 267 ~~~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~ 315 (386)
+........... ........+.|.|.....+| +|.|+|.|.|......
T Consensus 167 -l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 167 -VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp -ECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred -CCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence 544322211110 11122234668899888888 9999999999876544
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-18 Score=141.73 Aligned_cols=183 Identities=17% Similarity=0.312 Sum_probs=113.8
Q ss_pred CceEEEeCCccEEEEEEeeee--CCCeEEEEEcCee--eC-----C-C-----------CceEEe------eeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH--PTPRISWRRENNA--IL-----P-T-----------GGSIYR------GSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~--~~-----~-~-----------~~~~~~------~~~l~i~~~ 194 (386)
+..+.+.+|++++|.|.+.+. +.+.+.|++.... .. . . .+.... ...|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL 86 (280)
T ss_dssp CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 345678899999999999765 4578999974311 00 0 0 011111 247999999
Q ss_pred CCCCCeEEEEEEecC--------CCCceeeeEEEEEEe---------------cceEeeCCCcccccCCCcEEEEEEEEe
Q psy8823 195 TKEDRGTYYCVAENG--------VGKGTRRNIAVEVEF---------------APVITVPKPRLGQALQYDMDLECHVEA 251 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~g 251 (386)
+.+|+|.|+|.+.+. ..........|.|.. ++.+...+. ..+.+|++++|.|.+.+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~ 165 (280)
T 3fku_X 87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS 165 (280)
T ss_dssp CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence 999999999999886 111123344566655 333444444 77889999999999987
Q ss_pred -cC-CCeeEEEeCC--eeeee-e---------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc---e
Q psy8823 252 -YP-PPAIVWIKED--TQQVL-T---------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT---S 314 (386)
Q Consensus 252 -~p-~~~~~W~~~~--~~~~~-~---------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~---~ 314 (386)
.+ .+.+.|++.. ..... . ...++.... ......|.|.+++.+|+|.|+|.+.|..+. .
T Consensus 166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~ 240 (280)
T 3fku_X 166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASR-----SGNTASLTITGLQPEDEADYYCSTWDSSLSAVVF 240 (280)
T ss_dssp CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEE-----ETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEE
T ss_pred CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEc-----cCCEEEEEECCCCHHHCEEEEEEEecCCCCceEE
Confidence 44 3689998732 22111 0 011222211 113457999999999999999999998632 2
Q ss_pred eeEEEEEEEecCCCCC
Q psy8823 315 EKTVELFESIIPVCPP 330 (386)
Q Consensus 315 ~~~~~l~v~~~p~~~~ 330 (386)
.....|.|...|..+|
T Consensus 241 g~~t~l~V~~~~~~~P 256 (280)
T 3fku_X 241 GGGTKLTVLGQPKAAP 256 (280)
T ss_dssp BCCCEEEEC-------
T ss_pred CCCEEEEECCCCCCCC
Confidence 3345666765554444
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=138.32 Aligned_cols=172 Identities=17% Similarity=0.289 Sum_probs=113.2
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eeeC-----C------------CCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAIL-----P------------TGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----~------------~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. . ..+... ....|.|.+++
T Consensus 14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 93 (261)
T 2xqy_G 14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT 93 (261)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence 456788999999999998765 5789999873 2110 0 011111 13579999999
Q ss_pred CCCCeEEEEEEecCCCCc--eeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeee
Q psy8823 196 KEDRGTYYCVAENGVGKG--TRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQV 267 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~ 267 (386)
.+|+|.|.|.+.+..+.. ......|.|.. +|.+....+...+..|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus 94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~ 173 (261)
T 2xqy_G 94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG 173 (261)
T ss_dssp GGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTT
T ss_pred cccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCc
Confidence 999999999999864311 12335677754 3555443333346679999999999885 776 999999986521
Q ss_pred eecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 268 LTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
....... . ........+.|.|.++..+| |.|+|.|.|..........
T Consensus 174 ~~~~~~~--~--~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~ 220 (261)
T 2xqy_G 174 VHTFPAV--L--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKK 220 (261)
T ss_dssp EEECCCE--E--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred eEecCce--e--cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEE
Confidence 1111111 0 01122245789999988888 9999999998766544433
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-18 Score=138.97 Aligned_cols=180 Identities=18% Similarity=0.275 Sum_probs=111.0
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcE--EEEecCCcccccccc-cc-CCc--ee---EEeccceeeecCCCcceEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPV--IWMKVDRNKVTEPLP-IS-TGS--SL---IIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v--~W~~~~~~~~~~~~~-~~-~~~--~~---~~~~~~~~~~~~~~~~~~~L~ 99 (386)
+....+.+|++|+|.|.+.+.+ ...+ .||+.........+. .. .+. .. ....+|+.+..+...++++|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 86 (232)
T 3qhz_H 7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT 86 (232)
T ss_dssp ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence 4456689999999999997532 2345 999965432211111 11 111 00 011356766666666788999
Q ss_pred EcccCCCCCeEEEEEeEEccc-------ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEeeeeCC--Ce
Q psy8823 100 VKDIQETDAGYYRCQVIIGIN-------NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PR 166 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~ 166 (386)
|.+++.+|+|.|.|.+.+..+ ........|.|. .+|.+....+ ...+..|+.++|.|.+.+.++ ..
T Consensus 87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~~~~P~~~~ 165 (232)
T 3qhz_H 87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVT 165 (232)
T ss_dssp ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC--------CEEEEEEEEEEEBSSCCE
T ss_pred ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecc-cccccCCCcEEEEEEEeeEeCCCeE
Confidence 999999999999999985421 112334456665 2344432222 223557999999999987544 35
Q ss_pred EEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 167 ISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 167 v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+.|++++..+. ..+......+.|.|.+....| |.|+|.+.|..+.
T Consensus 166 v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~ 218 (232)
T 3qhz_H 166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 218 (232)
T ss_dssp EEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred EEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCC
Confidence 88999885321 112223334678999998888 9999999997654
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=133.14 Aligned_cols=169 Identities=20% Similarity=0.344 Sum_probs=108.0
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eee---C-------------CCCceEEe------eeEEEECCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAI---L-------------PTGGSIYR------GSILKIPQITKE 197 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~---~-------------~~~~~~~~------~~~l~i~~~~~~ 197 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|+++. ... . ...+.... ...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (215)
T 1c5d_H 9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE 88 (215)
T ss_dssp CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence 45688999999999998764 4689999863 211 0 01111111 248999999999
Q ss_pred CCeEEEEEEecCCCC--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeee
Q psy8823 198 DRGTYYCVAENGVGK--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLT 269 (386)
Q Consensus 198 d~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~ 269 (386)
|+|.|.|.+.+..+. .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.| .+.|++++......
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~ 168 (215)
T 1c5d_H 89 DTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVH 168 (215)
T ss_dssp GCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCC
T ss_pred cCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceE
Confidence 999999999986421 122335666653 4555443333445789999999999986 877 99999988652111
Q ss_pred cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 270 NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
..... . ........+.|. ....+| |.|+|.|.|..|.......
T Consensus 169 ~~~~~-~---~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~~ 211 (215)
T 1c5d_H 169 TFPAV-L---QSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDKK 211 (215)
T ss_dssp BCCCE-E---ETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred ecCcc-c---CCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEEe
Confidence 11100 0 001111223344 444456 9999999999988765544
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=134.84 Aligned_cols=178 Identities=17% Similarity=0.298 Sum_probs=114.1
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccc-cCCc-eeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPI-STGS-SLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++...+.+|++|+|.|.+.+. ....+.|||.........+.. .... ... ...+|+....+...++++|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL 86 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 445678999999999999752 345699999654332111111 1111 101 123577776666678889999999
Q ss_pred CCCCCeEEEEEeEEcc-------cceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEE
Q psy8823 104 QETDAGYYRCQVIIGI-------NNKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWR 170 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~-------~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~ 170 (386)
+.+|+|.|.|.+.+.. .........|.|.. +|.+....+. ..+.+|+.++|.|.+.+.+ ...+.|
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~~~~P~~~~v~W- 164 (230)
T 3n9g_H 87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSW- 164 (230)
T ss_dssp CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCC-CCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCC-ccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence 9999999999997642 11122345666642 3333321111 1245799999999998754 346999
Q ss_pred EcCeeeCC----------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILP----------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++..+.. .+......+.|.|.+...+| |.|+|.+.|..+.
T Consensus 165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 214 (230)
T 3n9g_H 165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (230)
T ss_dssp -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGT
T ss_pred -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCC
Confidence 5544321 11222334579999999999 9999999997654
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=118.49 Aligned_cols=96 Identities=22% Similarity=0.326 Sum_probs=79.6
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~--l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y 84 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQ--LAASERLSFPAD-----GAEHGLLLTAALPTDAGVY 84 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEECCEE-----TTEEEEEESSCCGGGCEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECccc--ccceeeEEEeec-----CceEEEEEecCChhhCEEE
Confidence 367777777788899999999999999999999999999988 655555543321 1356799999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
+|.|.|..|..+.++.|.|..+|
T Consensus 85 ~C~a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 85 VCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEEEEETTEEEEEEEEEEEEC--
T ss_pred EEEEEECCCEEEEEEEEEEEcCC
Confidence 99999999999999999997654
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=132.70 Aligned_cols=175 Identities=15% Similarity=0.199 Sum_probs=123.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc--eEE----eeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG--SIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+..... ... ....|.|.++..+|.|.|+|.+.|..+. ..
T Consensus 25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~ 103 (215)
T 3mtr_A 25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ-ES 103 (215)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCE-EE
T ss_pred CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCc-eE
Confidence 3457788999999999999999999999999988765532 121 2568999999999999999999999987 46
Q ss_pred eeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEe----cCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeE
Q psy8823 216 RNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEA----YPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTT 289 (386)
Q Consensus 216 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g----~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (386)
..+.+.|..+|....... ....+..+.|.|.... .|.. .+.|.+++...... .............
T Consensus 104 ~~~~l~v~~~P~~p~~~~--~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~-------~~~~~~~~~~~~~ 174 (215)
T 3mtr_A 104 LEFILVQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS-------KWYDAKEASMEGI 174 (215)
T ss_dssp EEEEEEECCCCCCCEEEE--EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE-------EEEEHHHHHHHTE
T ss_pred EEEEEEECCCCCCCcceE--EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc-------ccccccccccccc
Confidence 677888876654321111 1234567888887422 2222 37788776541110 0000000112367
Q ss_pred EEEeecccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 290 IRVITIEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 290 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
|.|.++...+.|.|+|.|.|..|....+..+.+...|
T Consensus 175 l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p 211 (215)
T 3mtr_A 175 VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211 (215)
T ss_dssp EEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred EEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence 9999999999999999999999999888777776555
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=153.17 Aligned_cols=273 Identities=15% Similarity=0.144 Sum_probs=166.0
Q ss_pred cCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEE
Q psy8823 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVII 117 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 117 (386)
.+..+.|.|.+.+.|.+.+.|.+++...... ...++.+.. ....+..|.+..+...|.|.|.|.
T Consensus 90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~------------~~~~~~i~~-~~~~~~~l~~~~va~~~~G~~~~~--- 153 (731)
T 2v5y_A 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTW------------NRAELAIST-FWPNFYQVIFEVITSGHQGYLAID--- 153 (731)
T ss_dssp CSEEEEEEEEETTCCCCSEEEEECCCCCSSC------------EEEEEEECC-CTTSCEEEEEEEEECSSCCEEEEC---
T ss_pred CcceEEEEEecCCCCccceeEEEeCCcCCce------------eEEEEEEee-cCCCceEEEEEEEecCCceEEEEe---
Confidence 3458999999999999999999988654110 001111100 001222344444445555555542
Q ss_pred cccceeeeEEEEEE---ecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEE-EE--EcCeeeCCCCceE----Eeee
Q psy8823 118 GINNKISAEVDLQV---RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRIS-WR--RENNAILPTGGSI----YRGS 187 (386)
Q Consensus 118 ~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~-W~--~~~~~~~~~~~~~----~~~~ 187 (386)
.+.+.+ ..+|.+.. +....+.+|++++|.|.+.|.|.+.+. |+ +++..+....... ....
T Consensus 154 --------~v~~~~~~~~~~p~~~~--~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~ 223 (731)
T 2v5y_A 154 --------EVKVLGHPCTRTPHFLR--IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 223 (731)
T ss_dssp --------CBEEESSCCSSSCEECC--CCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEE
T ss_pred --------eEEeeeccccccccccc--ccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceE
Confidence 122222 24555542 346789999999999999999999887 77 5665543221111 1246
Q ss_pred EEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEec---CCC---eeEEEe
Q psy8823 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY---PPP---AIVWIK 261 (386)
Q Consensus 188 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~---~~~W~~ 261 (386)
.|.|.++...|.|.|+|.+.|..+...+....|.|..+|.....+... ......+.|.|..... .+. .+.|..
T Consensus 224 ~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~ 302 (731)
T 2v5y_A 224 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA-SVGATYLWIQLNANSINGDGPIVAREVEYCT 302 (731)
T ss_dssp EEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEE-EECSSCEEEECCCSSBSSCSCCCEEEEEEEE
T ss_pred EEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCccee-ccCCceEEEEeCCcccCCCCccEEEEEEEEE
Confidence 899999999999999999999988755666778888777644333222 2234678888875321 121 455654
Q ss_pred CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEE--cCCCceeeEEEEEEEecCCCCCCCCC-cee-
Q psy8823 262 EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA--NKLGTSEKTVELFESIIPVCPPQTQP-SEL- 337 (386)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~v~~~p~~~~~~~~-~~~- 337 (386)
.+.. ..... ......+.|.++.+.+...|+|.|. |..|....+..+.+...+..|+..+. ..+
T Consensus 303 ~~~~-------~~~~~------~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~ 369 (731)
T 2v5y_A 303 ASGS-------WNDRQ------PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVV 369 (731)
T ss_dssp SSSS-------CEEEE------ECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEE
T ss_pred CCCC-------ceEEe------ccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEE
Confidence 4321 00110 0124678899999999899999999 99998876655555555544433222 112
Q ss_pred -ecCcceeeeEEec
Q psy8823 338 -LPLRNVNMAVIFA 350 (386)
Q Consensus 338 -~~~~~~~~~c~~~ 350 (386)
.....+.+.+..+
T Consensus 370 ~~~~~sv~l~W~~p 383 (731)
T 2v5y_A 370 EVKSRQITIRWEPF 383 (731)
T ss_dssp EECSSCEEEEEECC
T ss_pred eccCCeEEEEEECC
Confidence 2334566666553
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=136.83 Aligned_cols=182 Identities=18% Similarity=0.259 Sum_probs=113.9
Q ss_pred eeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+....+.+|++|+|.|.+.+. +...+.||+.........+. .. .+..... ..+|+....+...++++|.|.
T Consensus 4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 83 (248)
T 3u2s_H 4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN 83 (248)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 34567779999999999999752 34569999965433211111 11 1111111 135666665555678899999
Q ss_pred ccCCCCCeEEEEEeEEcc---------------------cceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEE
Q psy8823 102 DIQETDAGYYRCQVIIGI---------------------NNKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLE 156 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~---------------------~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~ 156 (386)
+++.+|+|.|.|.+.+.. .........|.|. .+|.+....+. ..+..|+.++|.
T Consensus 84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~~~~L~ 162 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPS-SKSTSGGTAALG 162 (248)
T ss_dssp SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC-------CEEEEE
T ss_pred CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCC-ccccCCCcEEEE
Confidence 999999999999997631 1112234566665 23333322222 234568999999
Q ss_pred EEeeee-C-CCeEEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 157 CFAGGH-P-TPRISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 157 C~~~~~-~-~~~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|.+.+. | ...+.|++++..+. ..+......+.|.|.+...+| |.|+|.+.|....
T Consensus 163 C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 227 (248)
T 3u2s_H 163 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 227 (248)
T ss_dssp EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGT
T ss_pred EEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCC
Confidence 999774 4 35699999885321 112233345678899888888 9999999997654
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=137.22 Aligned_cols=180 Identities=18% Similarity=0.268 Sum_probs=113.8
Q ss_pred ccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCcccccccc-cc------CCceeEE---eccceeeecCCCcceE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLP-IS------TGSSLII---RDSRFAIRYDTASSTY 96 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~-~~------~~~~~~~---~~~~~~~~~~~~~~~~ 96 (386)
+....+.+|++|+|.|.+.+.+ ...+.||+.........+. .. .+..... ..+|+.+..+...+++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 86 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV 86 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence 4566789999999999998654 3479999965433211111 11 1111111 1356666655556788
Q ss_pred EEEEcccCCCCCeEEEEEeEEccc------------ceeeeEEEEEEe----cCCeeecCCCceEEEeCCccEEEEEEee
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGIN------------NKISAEVDLQVR----RPPVISDNSTRSLVVSEGQPVQLECFAG 160 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~------------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~~g~~v~l~C~~~ 160 (386)
+|.|.+++.+|+|.|.|.+.+..+ ........|.|. .+|.+....+. ..+..|+.++|.|.+.
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~ 165 (239)
T 3tv3_H 87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVK 165 (239)
T ss_dssp EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCC-CCC--TTEEEEEEEEE
T ss_pred EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCC-hhhccCCcEEEEEEEe
Confidence 999999999999999999875421 111233456664 23333322121 1244699999999998
Q ss_pred ee-CCC-eEEEEEcCeeeC--------CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 161 GH-PTP-RISWRRENNAIL--------PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 161 ~~-~~~-~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+. |.+ .+.|++++..+. ..+......+.|.|.+...+| |.|+|.+.|..+.
T Consensus 166 ~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 226 (239)
T 3tv3_H 166 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 226 (239)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred eEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCC
Confidence 74 433 488999886321 112223334678899988888 9999999997654
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=138.02 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=102.4
Q ss_pred Ceeeeeccceee--ecCCcEEEEEEEeeCC----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 25 PTISYISQEQIK--DIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 25 p~i~~~~~~~~v--~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
|.+.+.++...+ .+|++++|.|.+.+.+ ...|.|+|++..+.... ........++.+.. ...|
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~----~~~~~~~~~g~~~~-------~~~l 70 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK----TKPREEQYNSTYRV-------VSVL 70 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCE----ECCCEECTTSCEEE-------EEEE
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcc----cCCceeccCCcEEE-------EEEE
Confidence 556666554434 7999999999998754 34899999886542110 00000001111111 1134
Q ss_pred EEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEEcC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRREN 173 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~ 173 (386)
.|.....+|+|.|+|.+.+..+.. .+..+.+ .+..+|.+.........+ .|..++|.|.+.|. |+ +.++|+++|
T Consensus 71 ~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g 149 (207)
T 1l6x_A 71 TVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNG 149 (207)
T ss_dssp ECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred EEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECC
Confidence 444444556999999999765432 2223322 234455543322221112 45569999999886 43 389999999
Q ss_pred eeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+..... .......|.+.....+|.|.|+|.+.|....
T Consensus 150 ~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 150 QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred eeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 87653211 1112234566666567899999999997653
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-17 Score=135.82 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=105.8
Q ss_pred CceEEEeCCccEEEEEEeeeeC-----CCeEEEEEcC--ee---eC---------CCCceEE----eeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-----TPRISWRREN--NA---IL---------PTGGSIY----RGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~---~~---------~~~~~~~----~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++++|.|.+.+.+ .+.+.|+++. .. +. ...+... ....|.|.+++.+|
T Consensus 22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 101 (268)
T 1x9q_A 22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED 101 (268)
T ss_dssp CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence 3455678999999999998776 4789999864 11 10 0111111 13479999999999
Q ss_pred CeEEEEEEecCCCCceeeeEEEEEEecce-----------------------EeeCCCcccccCCCcEEEEEEEEecCC-
Q psy8823 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPV-----------------------ITVPKPRLGQALQYDMDLECHVEAYPP- 254 (386)
Q Consensus 199 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~~~~~~~~~~g~~~~l~C~~~g~p~- 254 (386)
+|.|+|.+.+..+........|.|...+. ....+....+.+|++++|.|.+.+.++
T Consensus 102 sG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~ 181 (268)
T 1x9q_A 102 LGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFG 181 (268)
T ss_dssp CEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGG
T ss_pred CEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCcccc
Confidence 99999999987543222334555554321 111233456788999999999998764
Q ss_pred -CeeEEEeCC--eee-eee----------------cCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 255 -PAIVWIKED--TQQ-VLT----------------NNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 255 -~~~~W~~~~--~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+.+.|+++. ... .+. ...++..... .......|.|.+++.+|+|.|+|.|.|.
T Consensus 182 ~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 182 HYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRD---DSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp GCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred ccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEe---CCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 689999853 221 110 0112221110 0112467999999999999999999985
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=141.12 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=109.1
Q ss_pred cCCeeeeecccee--eecCCcEEEEEEEeeC---CCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 23 RTPTISYISQEQI--KDIGGTVELKCSVQYA---QDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 23 ~~p~i~~~~~~~~--v~~G~~v~L~C~~~~~---~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
.+|.+.+.+.... +.+|++++|.|.+.+. |.+ .|.|++++..+.... ........++.+ ....
T Consensus 14 ~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~-------~~~s 82 (239)
T 1i1c_A 14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQ----THAPEKQSNSTL-------RSVS 82 (239)
T ss_dssp ---CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCE----ECCCEECTTSCE-------EEEE
T ss_pred cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcc----cccceEcCCCcE-------EEEE
Confidence 4566666555554 7899999999999875 554 799999885432110 000000011122 2345
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeee-CC-CeEEEEE
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PT-PRISWRR 171 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~ 171 (386)
+|.|.+++.+|+|.|+|.+.+..+.. ....+.+ .+..+|.+........ ...|+.++|.|.+.|. |+ ..++|++
T Consensus 83 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k 161 (239)
T 1i1c_A 83 ELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKM 161 (239)
T ss_dssp EEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEE
Confidence 89999999999999999999765432 2223322 3344555443222211 1247889999999885 44 4799999
Q ss_pred cCeeeCCCCc---------eEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 172 ENNAILPTGG---------SIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+|..+..... .......|.+.....+|.|.|+|.+.|....
T Consensus 162 ~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 162 NGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp TTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 9987643211 1112234556555556799999999997654
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=152.69 Aligned_cols=172 Identities=19% Similarity=0.289 Sum_probs=119.7
Q ss_pred CceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCC-------------CceEEeeeEEEECCCCCCCCeEEEEEEe
Q psy8823 142 TRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPT-------------GGSIYRGSILKIPQITKEDRGTYYCVAE 207 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~-------------~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 207 (386)
.....+.+|++++|.|.+ .+.|.+.++|++++..+... ........+|.|.+++.+|+|.|+|.+.
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 452 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM 452 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEE
Confidence 355678899999999999 78888999999987632111 1112234579999999999999999999
Q ss_pred cCCCCceeeeEEEEEEecceE-eeCCCcccccCCCc-EEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeee-----
Q psy8823 208 NGVGKGTRRNIAVEVEFAPVI-TVPKPRLGQALQYD-MDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHF----- 279 (386)
Q Consensus 208 ~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~-~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~----- 279 (386)
|..+......+.|.|..+|.. .+......+..++. +.|.|.+.+ +|.|.++|++++..+... .....+...
T Consensus 453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~~ 531 (581)
T 3o3u_N 453 NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPN-EKGVSVKEQTRRHP 531 (581)
T ss_dssp CTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTT-STTEEEEEEEEECT
T ss_pred cCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCC-CCeEEEEeeeEEcC
Confidence 988875467788888775431 12222222444544 567999988 699999999999883221 122222111
Q ss_pred eecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCce
Q psy8823 280 ATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTS 314 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~ 314 (386)
..+.+...++|.|.+++ .++.|.|+|.|.|..+..
T Consensus 532 ~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 532 ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp TTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred CCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 22233456789999998 566889999999997544
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=138.67 Aligned_cols=172 Identities=19% Similarity=0.298 Sum_probs=98.9
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--eeC------C-----------CCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRENN--AIL------P-----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~~~------~-----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+.+ .+.+.|++... ... . ..+... ....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (257)
T 3bn9_D 9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA 88 (257)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 45688999999999998765 56899998641 110 0 011111 134799999999
Q ss_pred CCCeEEEEEEecCCC----------C--ceeeeEEEEEEe----cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeE
Q psy8823 197 EDRGTYYCVAENGVG----------K--GTRRNIAVEVEF----APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIV 258 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~ 258 (386)
+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.
T Consensus 89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~ 168 (257)
T 3bn9_D 89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 168 (257)
T ss_dssp GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEE
T ss_pred hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEE
Confidence 999999999998654 1 112334677754 4555443333345679999999999986 777 999
Q ss_pred EEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 259 WIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 259 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
|++++.......... . ......+...+.|.|.++..+| |.|+|.|.|..........
T Consensus 169 W~k~g~~~~~~~~~~--~-~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~ 225 (257)
T 3bn9_D 169 WNSGALTSGVHTFPA--V-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 225 (257)
T ss_dssp ETTTTCCSSCEECCC--E-ECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEE
T ss_pred EeeCCCcCCcEecCC--e-EcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEE
Confidence 999987521110000 0 0111122245678888888888 9999999997665544433
|
| >3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=138.47 Aligned_cols=177 Identities=18% Similarity=0.313 Sum_probs=110.8
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccc-cCCc-eeE---EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPI-STGS-SLI---IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++...+.+|++|+|.|.+.+. ....+.||+.........+.. .... ... ...+|+....+...++++|.|.++
T Consensus 30 ~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 109 (267)
T 3u1s_H 30 SGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGL 109 (267)
T ss_dssp CCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSC
T ss_pred eCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCC
Confidence 445678999999999998642 345699999654332221111 1111 111 113577776666667889999999
Q ss_pred CCCCCeEEEEEeEE-------cc------------c-c----eeeeEEEEEEe----cCCeeec-CCCceEEEeCCccEE
Q psy8823 104 QETDAGYYRCQVII-------GI------------N-N----KISAEVDLQVR----RPPVISD-NSTRSLVVSEGQPVQ 154 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~-------~~------------~-~----~~~~~~~l~v~----~~p~~~~-~~~~~~~~~~g~~v~ 154 (386)
+.+|+|.|.|.+.+ .. . . .......|.|. .+|.+.. .+... ..+|+.++
T Consensus 110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~--~~~g~~~~ 187 (267)
T 3u1s_H 110 TADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSK--STSGGTAA 187 (267)
T ss_dssp CGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGG--GEETTEEE
T ss_pred ChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcc--cCCCCcEE
Confidence 99999999999861 11 0 0 11123456664 2333331 22211 24689999
Q ss_pred EEEEeeee-C-CCeEEEEEcCeeeCC----------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 155 LECFAGGH-P-TPRISWRRENNAILP----------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 155 l~C~~~~~-~-~~~v~W~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
|.|.+.+. | .+.++| ++..+.. .+......+.|.|.+...+| +.|+|.+.|....
T Consensus 188 l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 254 (267)
T 3u1s_H 188 LGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 254 (267)
T ss_dssp EEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred EEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCC
Confidence 99999764 4 457999 5544321 11222334578999988888 9999999987654
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-17 Score=130.81 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=119.2
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
....+|.| ..+....+.+|+.++|.|.+.+.|.+.+.|++++..+... ...++.+.. .....+|.
T Consensus 15 ~~~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~------------~~~~~~~~~--~~~~~~L~ 79 (215)
T 3mtr_A 15 SHMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSS------------NYSNIKIYN--TPSASYLE 79 (215)
T ss_dssp CCCEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCS------------SSCSEEEEE--ETTEEEEE
T ss_pred ceecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCC------------CCccEEEec--CCCeeEEE
Confidence 34456777 4666777999999999999999999999999988654211 001222221 12356899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee----eCCC--eEEEEEcC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG----HPTP--RISWRREN 173 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~----~~~~--~v~W~~~~ 173 (386)
|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|..+.. ......+..+.|.|.... .|.. .+.|.+++
T Consensus 80 i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p~~---~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~ 155 (215)
T 3mtr_A 80 VTPDSENDFGNYNCTAVNRIGQE-SLEFILVQADTPSSPSI---DQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVG 155 (215)
T ss_dssp ECCCSGGGCEEEEEEEECSSCEE-EEEEEEEECCCCCCCEE---EEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETT
T ss_pred EecCChhhCeEEEEEEEECCCce-EEEEEEEECCCCCCCcc---eEEEEecceEEEEEecCCccCCCceEEEEEEEEECC
Confidence 99999999999999999876544 66788888776644321 111234677899997422 2222 47888876
Q ss_pred eeeCCCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 174 NAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 174 ~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
........... ....|.|.++...+.|.|+|.|.|..|..
T Consensus 156 ~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s 199 (215)
T 3mtr_A 156 EEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG 199 (215)
T ss_dssp CCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBC
T ss_pred CCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCccc
Confidence 54211110000 12679999999999999999999988863
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=114.64 Aligned_cols=95 Identities=17% Similarity=0.293 Sum_probs=77.2
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......++.+... ....+|.|.+++.+|+|.|+
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~ 79 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT-----DDLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEEC-----SSEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecc-----cceEEEEEcCCCccCCEEEE
Confidence 5667667777888999999999999999999999999998833333334433221 13568999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEe
Q psy8823 305 CRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|.|..|..+.++.|.|..
T Consensus 80 C~a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 80 LSLGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEECCCEEEEEEEEEEEE
Confidence 99999999999999998863
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.8e-17 Score=141.06 Aligned_cols=165 Identities=12% Similarity=0.159 Sum_probs=115.2
Q ss_pred EeCCccEEEEEEeeee---CC-CeEEEEEcCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 147 VSEGQPVQLECFAGGH---PT-PRISWRRENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~---~~-~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+..|+.++|.|.+.+. |. ..++|++++..+... .........|.|.+++.+|+|.|+|.+.+.....
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6789999999999877 32 369999998664321 1122234579999999999999999999876532
Q ss_pred -eeeeEEE--EEEecceEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCCeeeeeecCceeEEeeeeecCceeee
Q psy8823 214 -TRRNIAV--EVEFAPVITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDT 288 (386)
Q Consensus 214 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (386)
....+.+ .+..+|.+.+.+.......|+.++|.|.+.|+++ +.|+|++++.. +............+..+...+
T Consensus 260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~--~~~~~~~~~~~~~dgty~~~s 337 (376)
T 2aty_A 260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQP--AENYKNTQPIMNTNESYFVYS 337 (376)
T ss_pred ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEE--CCCeEeCCceECCCCCEEEEE
Confidence 2223322 4566788777666655566899999999998643 48999999987 322222111112222233456
Q ss_pred EEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 289 TIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 289 ~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.|.|.....+|.|.|+|.|.|....
T Consensus 338 ~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 338 KLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred EEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 7888888888999999999998754
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=134.40 Aligned_cols=175 Identities=15% Similarity=0.191 Sum_probs=110.2
Q ss_pred cCCeeee-eccceeeecCCcEEEEEEEeeC-CC--CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 23 RTPTISY-ISQEQIKDIGGTVELKCSVQYA-QD--YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~-~~~~~~v~~G~~v~L~C~~~~~-~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
.+|.+.+ .|....+.+|+.++|.|.+.+. |. ..|.|++++..+.. ..........++.+. ....|
T Consensus 11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~----~~~~~~~~~~~g~~~-------~~s~L 79 (231)
T 2w59_A 11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLR----PDPMVLQEHFNGTYS-------ASSAV 79 (231)
T ss_dssp -CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCC----CCCCEEEECTTSCEE-------EEEEE
T ss_pred CCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccc----cccccceECCCCcEE-------EEEEE
Confidence 4566654 4555557899999999999874 53 48999988765410 000000011122222 23479
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEe------cCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEE
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR------RPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWR 170 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~ 170 (386)
.|.+++.+|+|.|+|.+.+.... ..+.+.|. .+|.+....+....+ .+..++|.|.+.|.++ +.++|+
T Consensus 80 ~I~~~~~~D~g~Y~C~~~~~~~~---~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~ 155 (231)
T 2w59_A 80 PVSTQDWLSGERFTCTVQHEELP---LPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWL 155 (231)
T ss_dssp ECCHHHHHTTCCEEEEEECTTCS---SCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred EecchhccCCCEEEEEEEcCCCC---CceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEE
Confidence 99999999999999999975432 22333332 344333221111112 2457999999988643 689999
Q ss_pred EcCeeeCCCC--------------------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 171 RENNAILPTG--------------------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 171 ~~~~~~~~~~--------------------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++|..+.... ......+.|.|.....+|.|.|+|.|.|....
T Consensus 156 k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 156 RDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp ETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred ECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 9998774432 11122356888888888899999999997654
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-16 Score=129.20 Aligned_cols=171 Identities=15% Similarity=0.243 Sum_probs=109.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee--C-------------CCCceEE-----eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI--L-------------PTGGSIY-----RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~--~-------------~~~~~~~-----~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|.+.. +.+.+.|++++. .. . ...+... ....|.|.+++.+|+
T Consensus 6 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~ 84 (238)
T 1bec_A 6 PRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT 84 (238)
T ss_dssp CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC
T ss_pred CCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC
Confidence 45667899999999999853 577899998641 11 0 0111111 235799999999999
Q ss_pred eEEEEEEecCCC----CceeeeEEEEEEe------cceEeeC-CCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeee
Q psy8823 200 GTYYCVAENGVG----KGTRRNIAVEVEF------APVITVP-KPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQ 266 (386)
Q Consensus 200 g~y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~ 266 (386)
|.|.|.+.+..+ ........|.|.. +|.+... +....+..|+.++|.|.+.|. |.+ .+.|++++..
T Consensus 85 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~- 163 (238)
T 1bec_A 85 SVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKE- 163 (238)
T ss_dssp EEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEE-
T ss_pred EEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEE-
Confidence 999999998642 1112334566654 4555443 334456689999999999986 655 8999999987
Q ss_pred eeecCceeE--EeeeeecCceeeeEEEEeecccCC-CeEEEEEEEcCCCcee
Q psy8823 267 VLTNNQHYS--ISHFATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTSE 315 (386)
Q Consensus 267 ~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~~ 315 (386)
+....... ............+.|.|......| +|.|+|.|.|......
T Consensus 164 -~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 214 (238)
T 1bec_A 164 -VHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE 214 (238)
T ss_dssp -ECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCTT
T ss_pred -CCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCCC
Confidence 44332211 000111111233456666655544 6889999999854433
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=127.26 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=110.1
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecC-CCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD-TASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~ 105 (386)
+...+....+.+|++|+|.|.+.+.. ..+.|+|.........+.... ......+|+....+ ...++++|.|.+++.
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~--~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLA--SGTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEES--SEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEc--cCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 44456667799999999999998544 479999975432111111111 11224567777655 446778999999999
Q ss_pred CCCeEEEEEeEEccc--------c--eeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcC
Q psy8823 106 TDAGYYRCQVIIGIN--------N--KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRREN 173 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~--------~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~ 173 (386)
+|+|.|.|.+.+..+ . .......|.|........ ...+.+..+ .++|.|.+.+.++ +.++|+++
T Consensus 81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~--~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~- 156 (207)
T 1ypz_E 81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA--KPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS- 156 (207)
T ss_dssp GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCC--CCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-
T ss_pred HHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCC--CCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-
Confidence 999999999986531 0 112345677764321111 122223222 3799999987643 68999999
Q ss_pred eeeCCCCceE--EeeeEEEECCCCC-CCCeEEEEEEecCCCC
Q psy8823 174 NAILPTGGSI--YRGSILKIPQITK-EDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~~~~--~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~ 212 (386)
..+....... ..++.+.+..... +|.|.|+|.+.|..+.
T Consensus 157 ~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~ 198 (207)
T 1ypz_E 157 KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSET 198 (207)
T ss_dssp SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCcc
Confidence 6554221111 1223444434443 6789999999987643
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=134.37 Aligned_cols=172 Identities=13% Similarity=0.197 Sum_probs=112.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee-------------CC----CCceEE-----eeeEEEECCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI-------------LP----TGGSIY-----RGSILKIPQITKE 197 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~-------------~~----~~~~~~-----~~~~l~i~~~~~~ 197 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|++++. .. .. ..+... ....|.|.+++.+
T Consensus 31 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 110 (279)
T 2wbj_D 31 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE 110 (279)
T ss_dssp CSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGG
T ss_pred CCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCcc
Confidence 445678999999999999877778899998641 10 00 111111 1347999999999
Q ss_pred CCeEEEEEEecCCC----C-ceeeeEEEEEEe------cceEeeC-CCcccccCCCcEEEEEEEEec-CC-CeeEEEeCC
Q psy8823 198 DRGTYYCVAENGVG----K-GTRRNIAVEVEF------APVITVP-KPRLGQALQYDMDLECHVEAY-PP-PAIVWIKED 263 (386)
Q Consensus 198 d~g~y~C~~~~~~~----~-~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~ 263 (386)
|+|.|+|.+.+..+ . .......|.|.. +|.+... +....+..|+.++|.|.+.|. |+ +.+.|++++
T Consensus 111 D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g 190 (279)
T 2wbj_D 111 DSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 190 (279)
T ss_dssp GCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETT
T ss_pred CCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECC
Confidence 99999999998421 1 112234566654 4555443 223344578999999999987 43 589999999
Q ss_pred eeeeeecCceeEEee------eeecCceeeeEEEEeecccC-CCeEEEEEEEcCCCcee
Q psy8823 264 TQQVLTNNQHYSISH------FATADEFTDTTIRVITIEKR-QYGSYICRAANKLGTSE 315 (386)
Q Consensus 264 ~~~~~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~ 315 (386)
.. +.......... .........+.|.|.+...+ |+|.|+|.|.|......
T Consensus 191 ~~--l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 191 KE--VHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp EE--CCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred EE--CCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence 87 43332211000 01112223456888887765 47889999999876554
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=148.25 Aligned_cols=174 Identities=18% Similarity=0.283 Sum_probs=115.8
Q ss_pred cceeeecCCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
....+.+|++++|.|.+ .+.+.+.+.|++++............+. .....+..... +++|.|.+++.+|+|.
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~--~~~~~r~~~~~-----~~~L~i~~v~~~D~G~ 446 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGG--GPWDSVARVLP-----NGSLFLPAVGIQDEGI 446 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCS--SGGGGTSEECT-----TSCEEESSCCGGGCEE
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCC--CCcCCcEEEcC-----CceEEEeccccccCeE
Confidence 34568899999999998 6677888999998753211100000000 00122333322 2279999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCcc-EEEEEEeee-eCCCeEEEEEcCeeeCCCCce------
Q psy8823 111 YRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQP-VQLECFAGG-HPTPRISWRRENNAILPTGGS------ 182 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~-v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~------ 182 (386)
|+|.+.+..+......+.|.|..+|..+........+.+|+. +.|.|.+.+ .|.+.++|++++..+......
T Consensus 447 Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~ 526 (581)
T 3o3u_N 447 FRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQ 526 (581)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEE
T ss_pred EEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEee
Confidence 999999876665577888999875533221112223555555 467999987 589999999999887543221
Q ss_pred ---------EEeeeEEEECCCC-CCCCeEEEEEEecCCCC
Q psy8823 183 ---------IYRGSILKIPQIT-KEDRGTYYCVAENGVGK 212 (386)
Q Consensus 183 ---------~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~ 212 (386)
....++|.|.+++ .++.|.|+|.+.|....
T Consensus 527 ~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 527 TRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred eEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 1123579999998 45578999999997643
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-17 Score=132.17 Aligned_cols=175 Identities=18% Similarity=0.268 Sum_probs=111.2
Q ss_pred eEEEeCCccEEEEEEeeeeC----CCeEEEEEcCee-----e---C------C---------CCceE-E------eeeEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHP----TPRISWRRENNA-----I---L------P---------TGGSI-Y------RGSIL 189 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~-----~---~------~---------~~~~~-~------~~~~l 189 (386)
.+.+.+|++++|.|.+.+.+ ...+.|++.... + . . ...+. . ....|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 88 (239)
T 3tv3_H 9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFL 88 (239)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEE
T ss_pred CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEE
Confidence 45688999999999997655 347999984311 1 0 0 00111 1 12359
Q ss_pred EECCCCCCCCeEEEEEEecCCC-----------C-ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-c
Q psy8823 190 KIPQITKEDRGTYYCVAENGVG-----------K-GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-Y 252 (386)
Q Consensus 190 ~i~~~~~~d~g~y~C~~~~~~~-----------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~ 252 (386)
.|.+++.+|+|.|.|.+.+..+ . .......+.|. .+|.+....+...+..|+.++|.|.+.+ .
T Consensus 89 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~ 168 (239)
T 3tv3_H 89 KLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF 168 (239)
T ss_dssp EECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEB
T ss_pred EECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEe
Confidence 9999999999999999986421 0 01122345553 3455554444445567999999999988 4
Q ss_pred CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 253 PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 253 p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
|++ .+.|++++........... ......+...+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 169 p~~~~v~W~~~g~~~~~~~~~~~---~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 169 PEPVTVSWNSGALTSGVHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp SSCCEEEEGGGTBCTTEEECCCE---ECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred CCCeEEEEEECCccCceEecCce---ECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 544 5889998864211111110 1112223345679999998888 9999999999887776666544
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=127.74 Aligned_cols=174 Identities=17% Similarity=0.216 Sum_probs=109.4
Q ss_pred CCceEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e---eC----C--------CCceE-E------eeeEEEECCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGH--PTPRISWRRENN--A---IL----P--------TGGSI-Y------RGSILKIPQI 194 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~---~~----~--------~~~~~-~------~~~~l~i~~~ 194 (386)
.+..+.+.+|++++|.|.+.+. +...+.|++... . +. . ...+. . ....|.|.++
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (230)
T 1ypz_F 7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL 86 (230)
T ss_dssp SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred cCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcC
Confidence 3556788999999999999764 456899998531 1 10 0 11111 1 1237999999
Q ss_pred CCCCCeEEEEEEecC---CCCceeeeEEEEEEe---------cceEee-CCCcccccCCCcEEEEEEEEec-CC-CeeEE
Q psy8823 195 TKEDRGTYYCVAENG---VGKGTRRNIAVEVEF---------APVITV-PKPRLGQALQYDMDLECHVEAY-PP-PAIVW 259 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~---~~~~~~~~~~l~v~~---------~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W 259 (386)
+.+|+|.|.|.+.+. ..........|.|.. +|...+ .+....+..|+.++|.|.+.|. |. +.+.|
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W 166 (230)
T 1ypz_F 87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYW 166 (230)
T ss_dssp CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEE
T ss_pred ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEE
Confidence 999999999999874 111122334666651 233222 1222334568899999999986 75 49999
Q ss_pred Ee-CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEE
Q psy8823 260 IK-EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVE 319 (386)
Q Consensus 260 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 319 (386)
++ ++.. +......... .....+...+.|.|..... + |.|+|.|.|..+....+..
T Consensus 167 ~~~~g~~--l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~~~~~ 222 (230)
T 1ypz_F 167 KEKDGNT--ILDSQEGDTL-KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGGADQA 222 (230)
T ss_dssp ECTTSSC--BCCCEECCCE-EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTTSCEE
T ss_pred EccCCeE--ccccccceee-cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCceeEe
Confidence 99 7655 2221111111 1112222456788988876 4 9999999999876544443
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=128.35 Aligned_cols=178 Identities=20% Similarity=0.292 Sum_probs=110.9
Q ss_pred ccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-ccC-CceeEE---eccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-IST-GSSLII---RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....+.+|++|+|.|.+.+. +...+.||+.........+. ... +..... ..+|+....+...++++|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (226)
T 3mlr_H 7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL 86 (226)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence 446678999999999999753 34569999965432211111 111 111111 13566666555567889999999
Q ss_pred CCCCCeEEEEEeEEccc--------ceeeeEEEEEEec----CCeeecCCCceEEEeCCccEEEEEEeeee-C-CCeEEE
Q psy8823 104 QETDAGYYRCQVIIGIN--------NKISAEVDLQVRR----PPVISDNSTRSLVVSEGQPVQLECFAGGH-P-TPRISW 169 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W 169 (386)
+.+|+|.|.|.+.+... ........|.|.. +|.+... .....+.+|+.++|.|.+.+. | .+.+.|
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W 165 (226)
T 3mlr_H 87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSW 165 (226)
T ss_dssp CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEE-EEEECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEe-cCcccccCCCCEEEEEEEEEEECCCeEEEE
Confidence 99999999999875421 1112234566642 2333211 111123478999999999775 3 357999
Q ss_pred EEcCeeeCC----------CCceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 170 RRENNAILP----------TGGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 170 ~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
++..+.. .+......+.|.|.+...+| |.|+|.+.|..+.
T Consensus 166 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 215 (226)
T 3mlr_H 166 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 215 (226)
T ss_dssp --GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred --CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCC
Confidence 4433211 12222334579999998889 9999999997654
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-18 Score=137.50 Aligned_cols=168 Identities=15% Similarity=0.227 Sum_probs=107.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCC---CeEEEEEcCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPT---PRISWRRENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+....+.+|+.++|.|.+.+.++ +.+.| + +...... .+.......|.|.++..+|+|.|+|.+.|.
T Consensus 11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~ 88 (214)
T 1ow0_A 11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP 88 (214)
T ss_dssp CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCS
T ss_pred cChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecC
Confidence 34445678999999999988754 68999 4 3332211 111123456888888889999999999987
Q ss_pred CCCce-eeeEE-EEEEecceEeeCC-CcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeecCceeE--Eeee---
Q psy8823 210 VGKGT-RRNIA-VEVEFAPVITVPK-PRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTNNQHYS--ISHF--- 279 (386)
Q Consensus 210 ~~~~~-~~~~~-l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~~~~~~--~~~~--- 279 (386)
.+... ...+. +.+..+|.+...+ ....+..|+.++|.|.+.|. |+ +.+.|++++.. +....... ....
T Consensus 89 ~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~--l~~~~~~~~~~~~~~~~ 166 (214)
T 1ow0_A 89 ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE--LPREKYLTWASRQEPSQ 166 (214)
T ss_dssp SCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEE--CCGGGSEECCCEECSCS
T ss_pred CCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEE--CCCCceeecCCcccccC
Confidence 65421 22222 1234577665433 33446788999999999985 44 38999999987 43332111 1111
Q ss_pred eecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 280 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.+..+...+.|.+.....+|.|.|+|.|.|....
T Consensus 167 ~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 167 GTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp SSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred CCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 1122223456667666667789999999998754
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-16 Score=112.82 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=84.5
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +....++.+... .....|.|.++..+|+|.|
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~--~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y 78 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQ--IQESEHMKVENS-----ENGSKLTILAARQEHCGCY 78 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSB--CCCSSSEEEEEC-----SSEEEEEETTCCTTTCEEE
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEE--CcCCCCEEEEEc-----CCEEEEEECCCChhcCEEE
Confidence 356677677778889999999999999999999999999988 554445444321 1367899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCCCCCCCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPVCPPQTQ 333 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~ 333 (386)
+|.|.|..|..+..+.|.|...|.+|..++
T Consensus 79 ~C~a~N~~g~~~~~~~l~V~~~p~~P~~p~ 108 (114)
T 2cqv_A 79 TLLVENKLGSRQAQVNLTVVDKPDPPAGTP 108 (114)
T ss_dssp EEEEECSSCEEECCEEEEEECSCSCCCCCT
T ss_pred EEEEEECCCcEEEEEEEEEECCCCCCCCCc
Confidence 999999999999999999998887665443
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-16 Score=129.41 Aligned_cols=171 Identities=16% Similarity=0.250 Sum_probs=109.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e---eC--CC----------C-ceEEeee-E--EEECCCCCCCCe
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A---IL--PT----------G-GSIYRGS-I--LKIPQITKEDRG 200 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~--~~----------~-~~~~~~~-~--l~i~~~~~~d~g 200 (386)
+..+.+.+|++++|.|.+.+.+.+.+.|+|... . +. .. + +...... . |.|.+++.+|+|
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG 87 (253)
T 3to4_D 8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR 87 (253)
T ss_dssp CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCE
T ss_pred CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCe
Confidence 445678899999999998888888999998321 1 00 00 0 1111100 1 999999999999
Q ss_pred EEEEEEecCCC---C--ceeeeEEEEEE------ecceEeeC-CCcccccCCCcEEEEEEEEe-cCCC-eeEEEeCCeee
Q psy8823 201 TYYCVAENGVG---K--GTRRNIAVEVE------FAPVITVP-KPRLGQALQYDMDLECHVEA-YPPP-AIVWIKEDTQQ 266 (386)
Q Consensus 201 ~y~C~~~~~~~---~--~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~g-~p~~-~~~W~~~~~~~ 266 (386)
.|+|.+.+..+ . .......+.|. .+|.+... +....+..|+.++|.|.+.| +|++ .+.|++++..
T Consensus 88 ~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~- 166 (253)
T 3to4_D 88 TLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE- 166 (253)
T ss_dssp EEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE-
T ss_pred EEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEE-
Confidence 99999986543 1 11223455554 34554432 22233445689999999998 6666 8999999987
Q ss_pred eeecCceeEEeee------eecCceeeeEEEEeecccCC-CeEEEEEEEcCCCce
Q psy8823 267 VLTNNQHYSISHF------ATADEFTDTTIRVITIEKRQ-YGSYICRAANKLGTS 314 (386)
Q Consensus 267 ~~~~~~~~~~~~~------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~g~~ 314 (386)
+........... ........+.|.|.....+| +|.|+|.|.|.....
T Consensus 167 -l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~~ 220 (253)
T 3to4_D 167 -VHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE 220 (253)
T ss_dssp -ECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred -CCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCCC
Confidence 443322111000 11222334678888888887 789999999986443
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-17 Score=131.36 Aligned_cols=174 Identities=19% Similarity=0.257 Sum_probs=107.2
Q ss_pred EEEeCCccEEEEEEeeeeC--CCeE--EEEEcCee----eC-----CC------------CceEE------eeeEEEECC
Q psy8823 145 LVVSEGQPVQLECFAGGHP--TPRI--SWRRENNA----IL-----PT------------GGSIY------RGSILKIPQ 193 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~--~~~v--~W~~~~~~----~~-----~~------------~~~~~------~~~~l~i~~ 193 (386)
+.+.+|++++|.|.+.+.+ ...+ .|++.... .. .. .+... ....|.|.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 89 (232)
T 3qhz_H 10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN 89 (232)
T ss_dssp SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence 4588999999999996532 2345 99984310 00 00 11111 123699999
Q ss_pred CCCCCCeEEEEEEecCCC-------CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEE
Q psy8823 194 ITKEDRGTYYCVAENGVG-------KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWI 260 (386)
Q Consensus 194 ~~~~d~g~y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~ 260 (386)
++.+|+|.|.|.+.+..+ ........+.|. .+|.+....+...+..|+.++|.|.+.+.+++ .+.|+
T Consensus 90 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~ 169 (232)
T 3qhz_H 90 MDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN 169 (232)
T ss_dssp CCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEG
T ss_pred CChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEE
Confidence 999999999999987531 112233455554 34555533444455679999999999885543 68899
Q ss_pred eCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 261 KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+++........... ......+...+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 170 ~~g~~~~~~~~~~~---~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 170 SGALTSGVHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp GGTBCTTEEECCCE---ECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred ECCEecceeeccce---eCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence 98864211111110 1111222345689999999889 9999999999988777766644
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=126.75 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=110.8
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e---eC------------CCCceEE-----eeeEEEECCCCCCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A---IL------------PTGGSIY-----RGSILKIPQITKED 198 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~------------~~~~~~~-----~~~~l~i~~~~~~d 198 (386)
.+..+.+.+|++++|.|.+. .+.+.+.|+++.. . +. ...+... ....|.|.+++.+|
T Consensus 9 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D 87 (252)
T 1oga_E 9 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP 87 (252)
T ss_dssp SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred cCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhh
Confidence 34567899999999999985 3567899998631 1 10 0111111 13579999999999
Q ss_pred CeEEEEEEecCCC--CceeeeEEEEEE------ecceEeeC-CCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeee
Q psy8823 199 RGTYYCVAENGVG--KGTRRNIAVEVE------FAPVITVP-KPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQV 267 (386)
Q Consensus 199 ~g~y~C~~~~~~~--~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~ 267 (386)
+|.|.|.+.+... ........+.|. .+|.+... +....+..|+.++|.|.+.|. |.+ .+.|++++..
T Consensus 88 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~-- 165 (252)
T 1oga_E 88 TAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE-- 165 (252)
T ss_dssp CEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE--
T ss_pred CEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEE--
Confidence 9999999998621 111123345554 35555543 233344578999999999985 654 8999999987
Q ss_pred eecCceeEEee------eeecCceeeeEEEEeecccC-CCeEEEEEEEcCCCcee
Q psy8823 268 LTNNQHYSISH------FATADEFTDTTIRVITIEKR-QYGSYICRAANKLGTSE 315 (386)
Q Consensus 268 ~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~~g~~~ 315 (386)
+.......... .........+.|.|...... |+|.|+|.|.|......
T Consensus 166 l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 166 VHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp ECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred CCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence 44332211000 01112223556888877664 67899999999876554
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=115.94 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=109.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+.+.|+...|.+|+++.|.|.+....+..+.|.-.-.. . .. .+...+...|.|.+++.
T Consensus 2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~------------~-~~--------~~~~~~~~~l~l~~vs~- 59 (185)
T 1iam_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPK------------K-EL--------LLPGNNRKVYELSNVQE- 59 (185)
T ss_dssp EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCE------------E-EE--------CSSSSSEEEEEEEEECS-
T ss_pred eEEECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCC------------c-cE--------eccCCceeEEEEEecCc-
Confidence 55677888899999999999997443334677531110 0 00 01112334789999984
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC--eEEEEEcCeeeCCCCce-
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP--RISWRRENNAILPTGGS- 182 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~--~v~W~~~~~~~~~~~~~- 182 (386)
| |.|.|.+. ..+...++.+.|.|+.+|......+....+.+|+.++|.|.+.+. |.. .++|++++..+......
T Consensus 60 ~-g~y~C~~~-c~~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~ 137 (185)
T 1iam_A 60 D-SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG 137 (185)
T ss_dssp C-BCCEEEEE-CSSCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT
T ss_pred C-CEEEEEEE-CCCCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCC
Confidence 4 99999985 334567889999999888666544444458899999999999774 443 48999999877432100
Q ss_pred EEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 183 IYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 183 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.....+|.+.....+|.+.|+|+|.+..+
T Consensus 138 ~~~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 138 EPAEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp TTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred ccccEEEEEeceeccCCCeEEEEEEecCc
Confidence 01233577776666666699999998765
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=129.87 Aligned_cols=176 Identities=20% Similarity=0.297 Sum_probs=108.9
Q ss_pred ceEEEeCCccEEEEEEeee--eCCCeEEEEEcCe--e---e---C-C----------CCceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGG--HPTPRISWRRENN--A---I---L-P----------TGGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~--~---~---~-~----------~~~~~~------~~~~l~i~~~~ 195 (386)
..+.+.+|++++|.|.+.+ .....+.|++... . + . . ..+... ....|.|.+++
T Consensus 7 ~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 86 (248)
T 3u2s_H 7 GGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLR 86 (248)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence 4567889999999999965 2346799998431 1 0 0 0 011111 12369999999
Q ss_pred CCCCeEEEEEEecCC---------------------CCceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEE
Q psy8823 196 KEDRGTYYCVAENGV---------------------GKGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVE 250 (386)
Q Consensus 196 ~~d~g~y~C~~~~~~---------------------~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~ 250 (386)
.+|+|.|.|.+.+.. .........+.|. .+|.+....+......|+.++|.|.+.
T Consensus 87 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~ 166 (248)
T 3u2s_H 87 VEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 166 (248)
T ss_dssp GGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEE
T ss_pred HHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEe
Confidence 999999999998641 0111223455554 345555444444455799999999998
Q ss_pred ec-C-CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 251 AY-P-PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 251 g~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+. | +..+.|++++........... ...+......+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus 167 ~~~P~~~~v~W~~~g~~~~~~~~~~~---~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 167 DYFPEPVTVSWNSGALTSGVHTFPAV---LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECCCE---ECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred eEECCCeEEEEeECCccCceeecCce---ECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 74 4 347999998864211111110 1112223345678899988888 9999999999887776665543
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=129.42 Aligned_cols=183 Identities=18% Similarity=0.298 Sum_probs=112.2
Q ss_pred eeccceeeecCCcEEEEEEEeeCC--------------CCcEEEEecCCccccccccccCCce--eE-Eeccceeee-c-
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ--------------DYPVIWMKVDRNKVTEPLPISTGSS--LI-IRDSRFAIR-Y- 89 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~--------------~~~v~W~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~-~- 89 (386)
..+....+.+|++++|.|.+...+ ...+.||+.........+.+..+.. .. ..+++..+. .
T Consensus 163 tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~ 242 (401)
T 3f8u_B 163 THTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWD 242 (401)
T ss_dssp ESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEES
T ss_pred CCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeec
Confidence 345567799999999999987433 2459999865332222222222211 00 011111111 0
Q ss_pred -----CCCcceEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCc-cEEEEEEeeee-
Q psy8823 90 -----DTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQ-PVQLECFAGGH- 162 (386)
Q Consensus 90 -----~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~-~v~l~C~~~~~- 162 (386)
....++.+|.|.+++.+|+|.|.|.+.+.. ......+.|.|..+|.+.........+..|+ .++|.|.+.+.
T Consensus 243 ~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gfy 321 (401)
T 3f8u_B 243 DDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPY-LQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFY 321 (401)
T ss_dssp CCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEB
T ss_pred ccccccccCCcEEEEECcCCHhhCceEEEEEEecc-cceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCc
Confidence 123578899999999999999999998753 3345677888888887654322221134676 79999999875
Q ss_pred CC--CeEEEE-EcCe---eeCC------------CCceEEeeeEEEECCCCCCC-CeEEEEEEecCCCC
Q psy8823 163 PT--PRISWR-RENN---AILP------------TGGSIYRGSILKIPQITKED-RGTYYCVAENGVGK 212 (386)
Q Consensus 163 ~~--~~v~W~-~~~~---~~~~------------~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~ 212 (386)
|. +.++|+ +++. .... .+........|.+...+.++ .+.|+|.+.|..-.
T Consensus 322 P~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~ 390 (401)
T 3f8u_B 322 PSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLP 390 (401)
T ss_dssp SSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSC
T ss_pred CCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCC
Confidence 44 689995 7652 1111 11122234567777664334 45999999997643
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-16 Score=127.02 Aligned_cols=175 Identities=19% Similarity=0.303 Sum_probs=111.1
Q ss_pred eEEEeCCccEEEEEEeee--eCCCeEEEEEcCe--e---e---CC-----------CCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGG--HPTPRISWRRENN--A---I---LP-----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~--~---~---~~-----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+ .....+.|++... . + .. ..+... ....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (230)
T 3n9g_H 9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS 88 (230)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence 467889999999999965 2345799997431 1 1 00 011111 123599999999
Q ss_pred CCCeEEEEEEecCC-----CC--ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEecCC--CeeEEEeCC
Q psy8823 197 EDRGTYYCVAENGV-----GK--GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAYPP--PAIVWIKED 263 (386)
Q Consensus 197 ~d~g~y~C~~~~~~-----~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~~~W~~~~ 263 (386)
+|+|.|.|.+.+.. +. .......|.|. .+|.+....+...+..|+.++|.|.+.+.++ +.+.| ++
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~ 166 (230)
T 3n9g_H 89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NS 166 (230)
T ss_dssp GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GG
T ss_pred hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CC
Confidence 99999999998753 11 11233456663 3455554344444568999999999988543 36999 54
Q ss_pred eeeeeecCceeE-EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 264 TQQVLTNNQHYS-ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 264 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.. +....... ........+...+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus 167 ~~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 167 GA--LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp GT--BCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred cc--cCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence 44 21111100 001111223345689999999999 99999999998887776666554
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-16 Score=108.49 Aligned_cols=98 Identities=23% Similarity=0.316 Sum_probs=76.6
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+.+..+.+|+++.|.|.+.+.|.+.|+|+|++..+. .+.++.+.. ....++|.|
T Consensus 10 ~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~--------------~~~~~~~~~--~~~~~~L~I 73 (107)
T 3knb_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLA--------------ASERLSFPA--DGAEHGLLL 73 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC--------------CCSSEECCE--ETTEEEEEE
T ss_pred CCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECccccc--------------ceeeEEEee--cCceEEEEE
Confidence 4567899999999999999999999999999999999999886542 122333322 234568999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|
T Consensus 74 ~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~pP 107 (107)
T 3knb_B 74 TAALPTDAGVYVCRARNAAGE-AYAAAAVTVLEPP 107 (107)
T ss_dssp SSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC--
T ss_pred ecCChhhCEEEEEEEEECCCE-EEEEEEEEEEcCC
Confidence 999999999999999987654 4667888888765
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=107.05 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=69.4
Q ss_pred cCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 238 ALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
..+..+.|.|.+.|.|.|.+.|++++.. +...................+.|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~--l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 91 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAI--LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEE--ECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEE--CCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence 4577899999999999999999999988 54444322221112222346779999999999999999999999999999
Q ss_pred EEEEEEecCC
Q psy8823 318 VELFESIIPV 327 (386)
Q Consensus 318 ~~l~v~~~p~ 327 (386)
+.|.|...|.
T Consensus 92 ~~l~V~~~P~ 101 (103)
T 1wwb_X 92 ISAHFMGWPG 101 (103)
T ss_dssp EEECCSCCCC
T ss_pred EEEEECCCCC
Confidence 9999877664
|
| >1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-15 Score=122.84 Aligned_cols=181 Identities=17% Similarity=0.179 Sum_probs=106.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+...|....+.+|++|+|.|.+.+.+ ...+.||+.........+............+|+....+...++++|.|.+++
T Consensus 4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 83 (229)
T 1hxm_A 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (229)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence 34446667799999999999997543 3569999965322111111111110001145666665555677899999999
Q ss_pred CCCCeEEEEEeEEccc-----c--eeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEEcCee
Q psy8823 105 ETDAGYYRCQVIIGIN-----N--KISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRRENNA 175 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~ 175 (386)
.+|+|.|.|.+.+... . .......|.|........ ...+.+.. ..++|.|.+.+. |.+ .++|+++ ..
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~--~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~ 159 (229)
T 1hxm_A 84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHT--KPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KK 159 (229)
T ss_dssp GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCB--CCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SE
T ss_pred HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCc--CCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CE
Confidence 9999999999976421 1 112334677764211111 11222222 235899999875 443 8999998 66
Q ss_pred eCCCCceE--EeeeEEEECCCCC-CCCeEEEEEEecCCC
Q psy8823 176 ILPTGGSI--YRGSILKIPQITK-EDRGTYYCVAENGVG 211 (386)
Q Consensus 176 ~~~~~~~~--~~~~~l~i~~~~~-~d~g~y~C~~~~~~~ 211 (386)
+....... ..++.+.+..... ++.|.|+|.+.|...
T Consensus 160 ~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~~ 198 (229)
T 1hxm_A 160 ITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDNK 198 (229)
T ss_dssp EEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETTE
T ss_pred EecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCCC
Confidence 53221111 1123344433333 678899999998754
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=107.97 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=79.0
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++..... .....|.|.++..+|+|.
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~--~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~ 78 (103)
T 3qp3_A 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVE--LQESSKIHYTNT-----SGVLTLEILDCHTDDSGT 78 (103)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEEEEEE-----TTEEEEEECSCCGGGCEE
T ss_pred CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEE--CCCCCCEEEEEC-----CCEEEEEEcCCCcccCEE
Confidence 4567777777778889999999999999999999999999988 544444443211 134679999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEec
Q psy8823 303 YICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
|+|.|.|..|..+.++.|.|...
T Consensus 79 Y~C~a~N~~G~~~~~~~l~V~~~ 101 (103)
T 3qp3_A 79 YRAVCTNYKGEASDYATLDVTGG 101 (103)
T ss_dssp EEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEEeCCCcEEEEEEEEEECC
Confidence 99999999999999999988753
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-17 Score=132.96 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=105.5
Q ss_pred CCeeeee-ccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 24 TPTISYI-SQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 24 ~p~i~~~-~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
+|.+.+. |....+.+|++++|.|.+.+.+. ..|.| ++ ...... . .+......++++ ....+|.
T Consensus 3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~-~---~~~~~~~~~g~~-------~~~~~L~ 69 (214)
T 1ow0_A 3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSA-V---QGPPERDLCGCY-------SVSSVLP 69 (214)
T ss_dssp CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCC-E---ECCCCCCSTTCC-------CEEEECT
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCc-c---cCCceECCCCcE-------EEEEEEE
Confidence 4555554 66666899999999999987643 67999 43 322110 0 000000001111 1445899
Q ss_pred EcccCCCCCeEEEEEeEEcccce-eeeEEE-EEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCC--CeEEEEEcCee
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNK-ISAEVD-LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPT--PRISWRRENNA 175 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~-l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~ 175 (386)
|.+++.+|+|.|+|.+.+..... ..+.+. +.+..+|.+....+....+..|+.++|.|.+.|.++ +.++|+++|..
T Consensus 70 I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~ 149 (214)
T 1ow0_A 70 GCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE 149 (214)
T ss_dssp TTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEE
T ss_pred EeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEE
Confidence 99999999999999998754322 122222 123345654332222222457888999999988643 48999999987
Q ss_pred eCCCCc-----eE---------EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 176 ILPTGG-----SI---------YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 176 ~~~~~~-----~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+..... .. .....|.+.....++.|.|+|.+.|....
T Consensus 150 l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 150 LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp CCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred CCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 644310 11 11233455554445688999999997643
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-16 Score=111.48 Aligned_cols=102 Identities=20% Similarity=0.381 Sum_probs=68.8
Q ss_pred EEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 218 IAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 218 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
+.+.+..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +......... .....|.|.++..
T Consensus 3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~~~-------~~~~~L~i~~v~~ 73 (108)
T 3kvq_A 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNET--LVEDSGIVLK-------DGNRNLTIRRVRK 73 (108)
T ss_dssp --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSB--CCCBTTEEEE-------TTTTEEEECSCCG
T ss_pred eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeE--cccCCCeEEe-------CCCcEEEEeecCc
Confidence 456677788888878888889999999999999999999999999987 4333333221 1356799999999
Q ss_pred CCCeEEEEEEEcCCCceeeEEEEEEEecCCC
Q psy8823 298 RQYGSYICRAANKLGTSEKTVELFESIIPVC 328 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 328 (386)
+|+|.|+|.|.|..|....++.|.|...|..
T Consensus 74 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 104 (108)
T 3kvq_A 74 EDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104 (108)
T ss_dssp GGCEEEEEEEC----CEEEEEEEEEEC----
T ss_pred ccCEEEEEEEEeCCCceEEEEEEEEeCCCcc
Confidence 9999999999999999999999999876653
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=105.96 Aligned_cols=95 Identities=23% Similarity=0.374 Sum_probs=73.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.||.|...+.+..+.+|+.+.|.|.+.+.|.+.++|++++..+... ...++.... .....+|.|.+
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~------------~~~~~~~~~--~~~~~~L~I~~ 69 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQ------------EQGRFHIEN--TDDLTTLIIMD 69 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTT------------GGGTEEEEE--CSSEEEEEESS
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeee------------ccceeeeec--ccceEEEEEcC
Confidence 4688888888888999999999999999999999999988665211 112233222 23456899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 70 ~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 98 (100)
T 3knb_A 70 VQKQDGGLYTLSLGNEFGS-DSATVNIHIR 98 (100)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred CCccCCEEEEEEEEECCCE-EEEEEEEEEE
Confidence 9999999999999987654 4667777775
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-15 Score=128.92 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=111.0
Q ss_pred Ceeeeeccc-ee-eecCCcEEEEEEEeeC---CC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 25 PTISYISQE-QI-KDIGGTVELKCSVQYA---QD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 25 p~i~~~~~~-~~-v~~G~~v~L~C~~~~~---~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
|.+.+.+.. .. +.+|++++|.|.+.+. +. ..|.|++++....... ........++.+ .....|
T Consensus 167 p~v~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~-------~~~s~L 235 (376)
T 2aty_A 167 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQ----TQPREEQFNSTF-------RSVSEL 235 (376)
T ss_pred cEEEEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcc----cCCCCcccCCcE-------EEEEEE
Confidence 444443332 33 7899999999999866 22 3599999885542110 000000111112 223479
Q ss_pred EEcccCCCCCeEEEEEeEEcccce-eeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNK-ISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP--TPRISWRREN 173 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~ 173 (386)
.|..++.+|+|.|+|.+.+..... ....+.+ .+..+|.+....... ...+|+.++|.|.+.|.+ ...|+|+|++
T Consensus 236 ~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~-~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g 314 (376)
T 2aty_A 236 PIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPK-EQMAKDKVSLTCMITDFFPEDITVEWQWNG 314 (376)
T ss_pred EechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCH-HHhcCCceEEEEEEEEeECCCcEEEEEECC
Confidence 999999999999999998764422 2223322 344566555433222 233588999999998863 3589999999
Q ss_pred eeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 174 NAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 174 ~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+.... ........|.+.....+|.|.|+|.|.|....
T Consensus 315 ~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 315 QPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred EECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 8763211 11223456888888888899999999986543
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.63 E-value=8.4e-16 Score=124.98 Aligned_cols=172 Identities=20% Similarity=0.338 Sum_probs=105.4
Q ss_pred eEEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e---e---CC----------C-CceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGH--PTPRISWRRENN--A---I---LP----------T-GGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~---~---~~----------~-~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+. ....+.|++... . + .. . .+... ....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA 88 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence 4678899999999998653 345799998431 1 1 00 0 11111 124599999999
Q ss_pred CCCeEEEEEEecCCC--------CceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEec-C-CCeeEEEeC
Q psy8823 197 EDRGTYYCVAENGVG--------KGTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEAY-P-PPAIVWIKE 262 (386)
Q Consensus 197 ~d~g~y~C~~~~~~~--------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~~~~~W~~~ 262 (386)
+|+|.|.|.+.+..+ ........|.|. .+|.+....+......|+.++|.|.+.+. | ++.+.| +
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~ 166 (226)
T 3mlr_H 89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--N 166 (226)
T ss_dssp GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--G
T ss_pred ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--C
Confidence 999999999976421 001122345553 34444433333345678999999999885 4 347999 4
Q ss_pred CeeeeeecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEE
Q psy8823 263 DTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320 (386)
Q Consensus 263 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 320 (386)
+.. ...... .......+..+...+.|.|.+...+| |.|+|.|.|..+.......+
T Consensus 167 ~~~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~ 222 (226)
T 3mlr_H 167 SGA--LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 222 (226)
T ss_dssp GGT--CCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred Ccc--ccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence 433 111110 00001112223345689999999989 99999999998876554443
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-16 Score=127.14 Aligned_cols=178 Identities=16% Similarity=0.203 Sum_probs=107.6
Q ss_pred cCCeeeeecc-cee-eecCCcEEEEEEEeeCC----CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 23 RTPTISYISQ-EQI-KDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 23 ~~p~i~~~~~-~~~-v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
.+|.+.+.++ ... +..|+.++|.|.+.+.. ...|+|++++..+.... ........++.|.. ..
T Consensus 21 ~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~----~~~~~~~~~g~~~~-------~s 89 (240)
T 4acp_A 21 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK----TKPREEQYNSTYRV-------VS 89 (240)
T ss_dssp --CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCE----ECCCEEC---CEEE-------EE
T ss_pred CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCce----eccceECCCCeEEE-------EE
Confidence 3566666544 333 55699999999999753 34699999987653210 00000111233332 23
Q ss_pred EEEEcccCCCCCeEEEEEeEEcccc-eeeeEEEE--EEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCC-eEEEEE
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGINN-KISAEVDL--QVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTP-RISWRR 171 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l--~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~ 171 (386)
.|.|.....+|.|.|+|++.+.... .....+.+ .+..+|.+....+... ..+|+.++|.|.+.+. |.+ .++|++
T Consensus 90 ~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k 168 (240)
T 4acp_A 90 VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWES 168 (240)
T ss_dssp EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChH-HhcCCceEEEEEEeEEeCCCcEEEEEE
Confidence 7888888888999999999976542 22333332 2334554443322211 1248899999999885 443 799999
Q ss_pred cCeeeCCC---------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 172 ENNAILPT---------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 172 ~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+|..+... +........|.+......+.|.|+|.+.+....
T Consensus 169 ~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~ 218 (240)
T 4acp_A 169 NGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 218 (240)
T ss_dssp TTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence 99875421 122223456777776667889999999997643
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=103.69 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=72.3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCC--eeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED--TQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++ .. +......... .....|.|.++..+|+|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~--~~~~~~~~~~-------~~~~~L~i~~~~~~D~G~ 72 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAA--LAPELLVDAK-------SSTTSIFFPSAKRADSGN 72 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCB--CSTTSEEEEE-------TTEEEEECTTBCGGGCEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcc--cCCcEEEEec-------CCEEEEEECCCChhcCEE
Confidence 466666666778889999999999999999999999999 65 4333222111 235789999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEE
Q psy8823 303 YICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v 322 (386)
|+|.|.|..|..+.++.|.|
T Consensus 73 Y~C~a~N~~G~~~~~~~l~V 92 (93)
T 1wit_A 73 YKLKVKNELGEDEAIFEVIV 92 (93)
T ss_dssp EEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEEEEE
Confidence 99999999999999888876
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=104.87 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=76.0
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +........... ......|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y 77 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRT--VQSDDLHKMIVS----EKGLHSLIFEVVRASDAGAY 77 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEE--ECCCSSSCEEEE----TTTEEEEEESSCCGGGCEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEE--CcCCCcEEEEEc----CCCeEEEEECCCCcccCEEE
Confidence 466776667777888999999999999999999999999987 433322211111 11235899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEec
Q psy8823 304 ICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
+|.|.|..|..+.++.|.|...
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 78 ACVAKNRAGEATFTVQLDVLAK 99 (100)
T ss_dssp EEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEEEEEEEec
Confidence 9999999999999999988754
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.7e-15 Score=139.97 Aligned_cols=186 Identities=11% Similarity=0.068 Sum_probs=128.5
Q ss_pred CccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCC-CCCCCeEEEEEEecCCCCceeeeEEEEEE---ec
Q psy8823 150 GQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQI-TKEDRGTYYCVAENGVGKGTRRNIAVEVE---FA 225 (386)
Q Consensus 150 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~~~~~~~l~v~---~~ 225 (386)
...+.|.|.+.|.|.+.+.|.++|..+... ....+.|..+ .....+.|.|.+.+..|......+.+.+. .+
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~-----~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~ 165 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTW-----NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRT 165 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSC-----EEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSS
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCce-----eEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccc
Confidence 457899999999999999999999875322 2234566654 23334789998887777644333333322 35
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeE-EE--eCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIV-WI--KEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
|.+. .+....+..|+++.|.|.+.|.|.|.+. |+ +++.. +.......+ ......+.|.|.++...|.|.
T Consensus 166 p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~--l~~~~~~~~-----~~~~~~~~l~I~~~~~~d~g~ 237 (731)
T 2v5y_A 166 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRD--APLKEIKVT-----SSRRFIASFNVVNTTKRDAGK 237 (731)
T ss_dssp CEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCC--EEEEEEEEC-----CSSEEEEEEEECSCCTTTCEE
T ss_pred cccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcc--ccccceEEe-----ccccceEEEEEcccccccCeE
Confidence 5555 4456778899999999999999999888 77 56665 322111111 111235789999999999999
Q ss_pred EEEEEEcCCCc-eeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEe
Q psy8823 303 YICRAANKLGT-SEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 303 Y~C~a~n~~g~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~ 349 (386)
|+|.|.|..|. .+..+.|.|..+|.++..+. ........+.+.|..
T Consensus 238 Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~-~~~~~~~~v~l~w~~ 284 (731)
T 2v5y_A 238 YRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ-LASVGATYLWIQLNA 284 (731)
T ss_dssp EEEEEEETTEEEECCCEEEEEECCCCBSSCCE-EEEECSSCEEEECCC
T ss_pred EEEEEECCCCCcceeeEEEEEecCCCCCCCcc-eeccCCceEEEEeCC
Confidence 99999999998 67778888887776443332 222334567777765
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-15 Score=114.14 Aligned_cols=163 Identities=12% Similarity=0.085 Sum_probs=109.3
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
..+.+.|+...|.+|+++.|.|......+..+.|.-.-.. ... +. ......+.|.+++
T Consensus 3 f~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~------------~~~--~~--------g~~~~~~~ls~vs 60 (196)
T 3bn3_B 3 FWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRR------------NGT--QR--------GLRWLARQLVDIR 60 (196)
T ss_dssp SCEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSEE------------EEE--EE--------ETTEEEEEEEEEC
T ss_pred cEEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCC------------eeE--cc--------ccCceEEEEEEEc
Confidence 4577788888899999999999997444435777542110 000 00 1122258999998
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeeee-CCCe--EEEEEcCeeeCCCC-
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGH-PTPR--ISWRRENNAILPTG- 180 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~--v~W~~~~~~~~~~~- 180 (386)
+|.+.|.|.+.. .+...++.+.|.|+.+|......+....+.+|+.++|.|.+.+. |... ++|++++..+....
T Consensus 61 -~d~~~~~C~~~c-~~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~ 138 (196)
T 3bn3_B 61 -EPETQPVCFFRC-ARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSF 138 (196)
T ss_dssp -SSEECCEEEEEE-TTEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEEC
T ss_pred -cCCCceEEEEEC-CCCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecccc
Confidence 888889999754 34667889999999888655433332237899999999999764 4444 89999988763211
Q ss_pred -----ceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 181 -----GSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 181 -----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
........+.+.....+|...|+|+|.+..+
T Consensus 139 ~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 139 AGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174 (196)
T ss_dssp TTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred ccccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence 0011224566666665555699999998665
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=101.90 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=76.5
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....+...... ......|.|.++..+|+|.|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y 77 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVK--IERSDRIYWYWP----EDNVCELVIRDVTGEDSASI 77 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEEEEEE----ETTEEEEEECSCCGGGCEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEE--CCCCCCEEEEEc----CCCEEEEEECCCCcCCCEEE
Confidence 356676677778889999999999999999999999999988 444443332211 11356899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEe
Q psy8823 304 ICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~ 324 (386)
+|.|.|..|....++.|.|..
T Consensus 78 ~C~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 78 MVKAINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCCcEEEEEEEEEec
Confidence 999999999999999988853
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=124.11 Aligned_cols=173 Identities=20% Similarity=0.335 Sum_probs=105.2
Q ss_pred EEEeCCccEEEEEEeeee--CCCeEEEEEcCe--e---e---CC-----------CCceEE------eeeEEEECCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGH--PTPRISWRRENN--A---I---LP-----------TGGSIY------RGSILKIPQITKE 197 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~---~---~~-----------~~~~~~------~~~~l~i~~~~~~ 197 (386)
+.+.+|++++|.|.+.+. ....+.|++... . + .. ..+... ....|.|.+++.+
T Consensus 33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 112 (256)
T 3sob_H 33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE 112 (256)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence 458899999999998653 245799997431 1 0 00 011111 1235999999999
Q ss_pred CCeEEEEEEecCCC---------C-ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEEEEe-cCC-CeeEEEe
Q psy8823 198 DRGTYYCVAENGVG---------K-GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECHVEA-YPP-PAIVWIK 261 (386)
Q Consensus 198 d~g~y~C~~~~~~~---------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~-~~~~W~~ 261 (386)
|+|.|.|.+.+..+ . .......+.|. .+|.+....+...+..|+.++|.|.+.+ .|. +.+.|
T Consensus 113 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W-- 190 (256)
T 3sob_H 113 DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-- 190 (256)
T ss_dssp GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--
T ss_pred cCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--
Confidence 99999999987431 1 11223455554 3444443333444568999999999987 442 37999
Q ss_pred CCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 262 EDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 262 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
++.. +...... .........+...+.|.|.....+| |.|+|.|.|..+.......+.+
T Consensus 191 ~~~~--~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~ 249 (256)
T 3sob_H 191 NSGA--LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 249 (256)
T ss_dssp GGGT--BCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred CCcc--cCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence 4443 2111110 0001112223345689999999999 9999999999987776666544
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=9e-15 Score=102.19 Aligned_cols=94 Identities=17% Similarity=0.288 Sum_probs=77.2
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~--~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y 77 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKA--ITQGGKYKLSED-----KGGFFLEIHKTDTSDSGLY 77 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEE--CCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEE
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEE--CcCCCCEEEEEe-----CCEEEEEECCCCcccCEEE
Confidence 456677677778889999999999999999999999999987 555555544321 1345799999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEe
Q psy8823 304 ICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~ 324 (386)
+|.|.|..|....++.|.|..
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 78 TCTVKNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEeCCCcEeEEEEEEEEe
Confidence 999999999999999988863
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=108.03 Aligned_cols=101 Identities=19% Similarity=0.317 Sum_probs=80.7
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
++|.+...+....+.+|+.++|.|.+.|.|.+.+.|++++.. +........... ......|.|.++..+|+|.|
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKP--VRPDSAHKMLVR----ENGVHSLIIEPVTSRDAGIY 81 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSB--CCCCSSEEEEEC----TTSCEEEEESSCCGGGCSBB
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEE--CCCCCceEEEEe----cCCeEEEEEeeCCcccCEEE
Confidence 466777777778889999999999999999999999999887 433332221111 11256899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCCCCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPVCPP 330 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~~~~ 330 (386)
+|.|.|..|..+.++.|.|...|..|.
T Consensus 82 ~C~a~n~~g~~~~~~~l~V~~~p~~P~ 108 (110)
T 2dm3_A 82 TCIATNRAGQNSFSLELVVAAKESGPS 108 (110)
T ss_dssp CEEEECSSCEEEECCEEEEECCCCSSS
T ss_pred EEEEECCCCEEEEEEEEEEeCCCCCCC
Confidence 999999999999999999998777554
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-15 Score=105.20 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=69.3
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeee--cCceeeeEEEEeecccCCCeEEEEEEEcCCCceee
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT--ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEK 316 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 316 (386)
.+..+.|.|.+.|+|.|+++|++||.. +....+........ ......+.|.|.++...|+|.|+|.|.|..|....
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~--l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~ 91 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSV--LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEE--CCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEE--CCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence 567899999999999999999999988 55544433221110 11123578999999999999999999999999999
Q ss_pred EEEEEEEecCCC
Q psy8823 317 TVELFESIIPVC 328 (386)
Q Consensus 317 ~~~l~v~~~p~~ 328 (386)
++.|.|...|..
T Consensus 92 t~~l~v~~~P~~ 103 (126)
T 1he7_A 92 SIMAAFMDNPFE 103 (126)
T ss_dssp EEEECCCSCTTS
T ss_pred EEEEEEEcCCCC
Confidence 999988877754
|
| >1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=106.53 Aligned_cols=156 Identities=15% Similarity=0.291 Sum_probs=105.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEc-CeeeC-CCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRE-NNAIL-PTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
....+.+|+++.|.|.+....+..+.|.-. ++... ... .....|.|.+++. .|.|.|.+..... ...+.+.|
T Consensus 7 ~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~---~~~~~l~l~~vs~--~g~y~C~~~c~~~-~~~~~~~l 80 (185)
T 1iam_A 7 SKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG---NNRKVYELSNVQE--DSQPMCYSNCPDG-QSTAKTFL 80 (185)
T ss_dssp SEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSS---SSEEEEEEEEECS--CBCCEEEEECSSC-EEEEECEE
T ss_pred CCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccEeccC---CceeEEEEEecCc--CCEEEEEEECCCC-ceEEEEEE
Confidence 345689999999999996543444777531 11111 110 1234588999973 3999999865433 47788999
Q ss_pred EEEecce-EeeCCCcccccCCCcEEEEEEEEecCCC---eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecc
Q psy8823 221 EVEFAPV-ITVPKPRLGQALQYDMDLECHVEAYPPP---AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 221 ~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.|+.+|. +.+.+....+.+|+.++|.|.+.|..++ +++|++++.. +..... .....+.+|++....
T Consensus 81 ~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~--l~~~~~--------~~~~~~~tl~~~~~r 150 (185)
T 1iam_A 81 TVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE--LKREPA--------VGEPAEVTTTVLVRR 150 (185)
T ss_dssp EEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEE--EEEEEC--------CTTTEEEEEEEECCS
T ss_pred EEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEE--cccccC--------CCccccEEEEEecee
Confidence 9998876 4444444568899999999999985443 5899999988 332210 011134467777666
Q ss_pred cCCCeEEEEEEEcCCCce
Q psy8823 297 KRQYGSYICRAANKLGTS 314 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~ 314 (386)
.+|+..|+|.|.|..+..
T Consensus 151 eD~g~~~sC~A~~~l~~~ 168 (185)
T 1iam_A 151 DHHGAQFSCRTELDLRPQ 168 (185)
T ss_dssp SCSSCEEEEEEEEECGGG
T ss_pred ccCCCeEEEEEEecCccc
Confidence 777779999999998743
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=105.13 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=76.5
Q ss_pred EEecceEeeC---CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 222 VEFAPVITVP---KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 222 v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
+..+|.+... .....+.+|+.+.|.|.+.|.|.|.+.|++++.. +. ..++.+.. ......|.|.++..+
T Consensus 18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~--l~-~~~~~~~~-----~~~~~~L~i~~~~~~ 89 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP--LD-TSRVHVRT-----SDFDTVFFVRQAARS 89 (118)
T ss_dssp CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEE--CC-CSSCEEEE-----CSSEEEEEESSCCTT
T ss_pred eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEE--CC-CCcEEEEE-----CCCeEEEEECCCChh
Confidence 3456666543 3556788899999999999999999999999988 43 22322221 123567999999999
Q ss_pred CCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 299 QYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 299 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
|+|.|+|.|.|..|..+.++.|.|...|
T Consensus 90 D~G~Y~C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 90 DSGEYELSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp TCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred cCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence 9999999999999999999999998765
|
| >3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=119.16 Aligned_cols=178 Identities=17% Similarity=0.267 Sum_probs=112.6
Q ss_pred CceEEEeCCccEEEEEEeeeeC--------------CCeEEEEEc--Ce--ee-C--C---------CCc----------
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--------------TPRISWRRE--NN--AI-L--P---------TGG---------- 181 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--------------~~~v~W~~~--~~--~~-~--~---------~~~---------- 181 (386)
+..+.+.+|++++|.|.....+ ...+.|++. ++ .+ . . ..+
T Consensus 165 ~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~ 244 (401)
T 3f8u_B 165 TPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDD 244 (401)
T ss_dssp CSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCC
T ss_pred CCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeeccc
Confidence 3456788999999999885432 346999973 21 00 0 0 000
Q ss_pred ----eEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEecceEeeCCCccc-ccCCC-cEEEEEEEEec-CC
Q psy8823 182 ----SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKPRLG-QALQY-DMDLECHVEAY-PP 254 (386)
Q Consensus 182 ----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~g~-p~ 254 (386)
....+..|.|.+++.+|+|.|.|.+.+..+. ....+.+.|..+|.+...+.... ...|+ .++|.|.+.|. |.
T Consensus 245 ~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~ 323 (401)
T 3f8u_B 245 EPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQ-GQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPS 323 (401)
T ss_dssp CSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSS
T ss_pred ccccccCCcEEEEECcCCHhhCceEEEEEEecccc-eeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCC
Confidence 1124568999999999999999999987654 45677888888888776544433 45676 89999999885 55
Q ss_pred --CeeEEE-eCCee-eeeecCc-e--eEEeeeeecCceeeeEEEEeeccc-CCCeEEEEEEEcCC---CceeeEEEE
Q psy8823 255 --PAIVWI-KEDTQ-QVLTNNQ-H--YSISHFATADEFTDTTIRVITIEK-RQYGSYICRAANKL---GTSEKTVEL 320 (386)
Q Consensus 255 --~~~~W~-~~~~~-~~~~~~~-~--~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~---g~~~~~~~l 320 (386)
+.+.|. +++.. ....... . .......+..+...+.|.+...+. ++.+.|+|.+.|.. +..+.++.|
T Consensus 324 ~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVtL 400 (401)
T 3f8u_B 324 GGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTL 400 (401)
T ss_dssp TTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEEC
T ss_pred CCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEEe
Confidence 689995 76521 0011111 0 001111222233455677766543 34568999999987 555555543
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=104.70 Aligned_cols=100 Identities=20% Similarity=0.318 Sum_probs=80.1
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +.. ..++.+... ......|.|.++..+|+|.
T Consensus 14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~--~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~ 87 (116)
T 2kkq_A 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEM--VQFNTDRISLYQD----NTGRVTLLIKDVNKKDAGW 87 (116)
T ss_dssp BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEE--CCCCBTTEEEEEC----TTCEEEEEEEEECGGGCEE
T ss_pred CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEE--CcCCCCeEEEEeC----CCCeEEEEECCCCcccCEE
Confidence 467777777788899999999999999999999999999987 432 233333211 1124489999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 303 YICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
|+|.|.|..|....++.|.|...|..+
T Consensus 88 Y~C~a~N~~G~~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 88 YTVSAVNEAGVTTCNTRLDVTARPNQT 114 (116)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCSCCC
T ss_pred EEEEEEcCCCeEEEEEEEEEeCCCCCC
Confidence 999999999999999999998777543
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=100.48 Aligned_cols=94 Identities=19% Similarity=0.333 Sum_probs=75.0
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCce-eEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +..... +... .......|.|.++..+|+|.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~--~~~~~~~~~~~-----~~~~~~~L~i~~~~~~D~G~ 76 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQP--VRPDQRRFAEE-----AEGGLCRLRILAAERGDAGF 76 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEE--CCCBTTEEEEE-----CGGGEEEEEESSCCGGGCEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEE--CCCCCCEEEEE-----CCCCEEEEEEccCCcCCCEE
Confidence 456777777777889999999999999999999999999987 433222 2211 11134579999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEe
Q psy8823 303 YICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|+|.|.|..|....++.|.|..
T Consensus 77 Y~C~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 77 YTCKAVNEYGARQCEARLEVRG 98 (99)
T ss_dssp EEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEECCCceeEEEEEEEEC
Confidence 9999999999999999988864
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=103.98 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=74.8
Q ss_pred EEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 222 VEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 222 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....... ......|.|.++..+|+|
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~--~~~~~~~~--------~~~~~~L~i~~v~~~D~G 77 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQP--IQYARSTC--------EAGVAELHIQDALPEDHG 77 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSB--CSSCCCEE--------ETTEEEEEECSCCTTCCB
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEE--CcccceEe--------eCCeEEEEECCCChhhCE
Confidence 45677787777788899999999999999999999999999887 43322211 113578999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEE
Q psy8823 302 SYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.|+|.|.|..|..+.++.|.|
T Consensus 78 ~Y~C~a~N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 78 TYTCLAENALGQVSCSAWVTV 98 (99)
T ss_dssp CEEEEEECSSCEEEEECCEEE
T ss_pred EEEEEEEECCCeEEEEEEEEE
Confidence 999999999999988888776
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=114.65 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=96.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e--eC--------CCCceEE-------eeeEEEECCCCCCCCeEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A--IL--------PTGGSIY-------RGSILKIPQITKEDRGTY 202 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~--~~--------~~~~~~~-------~~~~l~i~~~~~~d~g~y 202 (386)
+..+.+.+|++++|.|.+.+.. +.+.|++... . .. ...+... ....|.|.+++.+|+|.|
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 86 (207)
T 1ypz_E 8 PSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTY 86 (207)
T ss_dssp CSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEE
T ss_pred CCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEE
Confidence 4567789999999999997654 4799998542 1 10 0111111 124799999999999999
Q ss_pred EEEEecCCC---------C-ceeeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEec-CC-CeeEEEeCCeeeeeec
Q psy8823 203 YCVAENGVG---------K-GTRRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAY-PP-PAIVWIKEDTQQVLTN 270 (386)
Q Consensus 203 ~C~~~~~~~---------~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~~~W~~~~~~~~~~~ 270 (386)
.|.+.+..+ . .......|.|...+.... .+.+.+.. ..+.|.|.+.+. |. +.+.|+++ .. +..
T Consensus 87 ~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~-~P~v~~~~-~~~~l~C~~~g~~P~~~~v~W~~~-~~--l~~ 161 (207)
T 1ypz_E 87 FCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA-KPSVFIMK-NGTNVACLVKDFYPKEVTISLRSS-KK--IVE 161 (207)
T ss_dssp EEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCC-CCEEEEEE-ETTEEEEEEEEESSSCCEEEEECS-SE--EEE
T ss_pred EEEEecCCcccccccccceeeecCccEEEEccCCCCCC-CCeEEEeC-CCCeEEEEEeeEeCCCeEEEEecC-Cc--ccC
Confidence 999987632 1 112234666654211111 11111111 237999999875 44 69999999 55 322
Q ss_pred CceeEEeeeeecCceeeeEEEEeecc-cCCCeEEEEEEEcCCCcee
Q psy8823 271 NQHYSISHFATADEFTDTTIRVITIE-KRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n~~g~~~ 315 (386)
.... ... . .++.+.+.... .+|.|.|+|.|.|..+..+
T Consensus 162 ~~~~-~~~--~----~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~~ 200 (207)
T 1ypz_E 162 FDPA-IVI--S----PSGKYSAVKLGQYGDSNSVTCSVQHNSETVH 200 (207)
T ss_dssp CCCE-EEE--C----TTSSEEEEECEEESSTTTCEEEEEETTEEEE
T ss_pred Cccc-eEE--c----CCCcEEEEEeecccCCCcEEEEEEECCccEe
Confidence 2111 000 0 12233333433 3778999999999987544
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.4e-15 Score=102.81 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=75.0
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeee-cCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLT-NNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +. ...++.. ...+.|.|.++..+|+|.
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~~~--------~~~~~L~i~~v~~~d~G~ 76 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFT--FPGRDPRATI--------QEQGTLQIKNLRISDTGT 76 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSE--ESSSCSSCEE--------CTTCCEEEESCCTTTCCE
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEE--CCCCCCCEEE--------cCCCEEEEccCCcccCEE
Confidence 356676677777888999999999999999999999999887 43 2222221 134579999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEec
Q psy8823 303 YICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
|+|.|.|..|....++.|.|...
T Consensus 77 Y~C~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 77 YTCVATSSSGETSWSAVLDVTES 99 (100)
T ss_dssp EEEEEECSSCCCBCCEEEEEESC
T ss_pred EEEEEEcCCCCEEEEEEEEEecC
Confidence 99999999999999999988754
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=110.46 Aligned_cols=106 Identities=22% Similarity=0.410 Sum_probs=83.1
Q ss_pred EEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 219 AVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 219 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
.+.+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++.. +....++.+... ......|.|.++..+
T Consensus 35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~--~~~~~~~~~~~~----~~~~~~L~I~~v~~~ 108 (154)
T 1fhg_A 35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNP--VKESRHFQIDYD----EEGNCSLTISEVCGD 108 (154)
T ss_dssp CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCSSSEEEEEC----TTCEEEEEESSCCGG
T ss_pred cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEE--CCCCCcEEEEEC----CCCeEEEEECCCChh
Confidence 34455678888777788899999999999999999999999999987 555544443211 112468999999999
Q ss_pred CCeEEEEEEEcCCCceeeEEEEEEEecCCCCC
Q psy8823 299 QYGSYICRAANKLGTSEKTVELFESIIPVCPP 330 (386)
Q Consensus 299 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~ 330 (386)
|+|.|+|.|.|..|....++.|.|...|....
T Consensus 109 D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~ 140 (154)
T 1fhg_A 109 DDAKYTCKAVNSLGEATCTAELLVETMGKEGE 140 (154)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEECC-----
T ss_pred cCEEEEEEEEECCCeEEEEEEEEEeCcCcCCC
Confidence 99999999999999999999999987776443
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=102.75 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=74.4
Q ss_pred eEeeCCCcccccCCCcEEEEEEEEec---CCCeeEEEeCCeeeeee--cCceeEEee-eeecCceeeeEEEEeecccCCC
Q psy8823 227 VITVPKPRLGQALQYDMDLECHVEAY---PPPAIVWIKEDTQQVLT--NNQHYSISH-FATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
.+...+....+.+|++++|.|.+.|. |.|.|.|+|+... .+. ...++.+.. +..........|.|.++...|+
T Consensus 9 ~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 9 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWM-DLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSC-CHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred EEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCc-ccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 35556677889999999999999875 8899999997421 111 123333321 1122223468899999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 301 GSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|.|+|+|.|..|..++++.|.|...|.
T Consensus 88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~ 114 (126)
T 2dav_A 88 GNYRCEVTYKDKFDSCSFDLEVHESTG 114 (126)
T ss_dssp EEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred EEEEEEEEeCCCcEEEEEEEEEEecCC
Confidence 999999999999999999999998443
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=103.92 Aligned_cols=103 Identities=20% Similarity=0.358 Sum_probs=75.5
Q ss_pred EEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 219 AVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 219 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
.|.|.++|.+...... ...+...|.|.+.|+|.|.+.|++++.. +............. .....+.|.|.++..+
T Consensus 2 ~L~V~~pP~i~~~~~~---~~~~~~~l~C~~~g~P~p~i~W~k~g~~--l~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~ 75 (118)
T 1wwc_A 2 ALTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQP--LRESKIIHVEYYQE-GEISEGCLLFNKPTHY 75 (118)
T ss_dssp --CCCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEE--CCCSSSEEEEEEEC-SSEEEEEEEEESCCGG
T ss_pred EEEEecCCceeccCCC---eeccceEEEEEeeeeCCCeEEEEECCEE--CCCCCceeEEEecc-CccccEEEEECCCChh
Confidence 4667777775544221 1236678999999999999999999988 54444333322111 1234678999999999
Q ss_pred CCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 299 QYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 299 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|+|.|+|.|.|..|..+.++.|.|...|.
T Consensus 76 d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~ 104 (118)
T 1wwc_A 76 NNGNYTLIAKNPLGTANQTINGHFLKEPF 104 (118)
T ss_dssp GCEEEEEEEEETTEEEEEEEEECCSCCCC
T ss_pred cCEEEEEEEECCCCeEeeEEEEEEccCCC
Confidence 99999999999999999999998877664
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-13 Score=107.43 Aligned_cols=180 Identities=11% Similarity=0.222 Sum_probs=123.0
Q ss_pred EEeCCccEEEEEEee-eeC---CCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCce-eeeEEE
Q psy8823 146 VVSEGQPVQLECFAG-GHP---TPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT-RRNIAV 220 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~-~~~---~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l 220 (386)
.+..|+.++|.|.+. |.| +..++|+|++..+... ...|.+..+...|+|.|+|++.+..+... +..+.+
T Consensus 13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa------T~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtV 86 (304)
T 3shs_A 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFL 86 (304)
T ss_dssp SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC------SSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEE
T ss_pred cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC------cceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEE
Confidence 366899999999985 455 3479999999776432 34689999999999999999998766532 223333
Q ss_pred EEEecceEee-CCCcccccCCCcEEEEEEE--Ee-cC-----CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEE
Q psy8823 221 EVEFAPVITV-PKPRLGQALQYDMDLECHV--EA-YP-----PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 221 ~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~--~g-~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (386)
.....+.+.. .+.......+..+.|.+.+ .| .| ..++.|++++.. +.. ...|+
T Consensus 87 T~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~--Isg----------------Aq~lT 148 (304)
T 3shs_A 87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDV--IDT----------------TQDIT 148 (304)
T ss_dssp ECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEE--EES----------------SSEEE
T ss_pred eccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeE--ccC----------------ccccc
Confidence 3222223333 2333445667889999887 43 44 358999999976 322 33466
Q ss_pred EeecccCCCeEEEEEEEcCCC--ceeeEEEEEEEecCCCCCCCCCceeecCcceeeeEEe
Q psy8823 292 VITIEKRQYGSYICRAANKLG--TSEKTVELFESIIPVCPPQTQPSELLPLRNVNMAVIF 349 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~c~~ 349 (386)
+......++|.|+|.++|..+ ..+.++.+.+...+..........+..|+.+.|.-..
T Consensus 149 ~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 208 (304)
T 3shs_A 149 IQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVV 208 (304)
T ss_dssp ECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEE
T ss_pred eeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEE
Confidence 777788899999999999977 3345666666665554445555667777766665443
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.3e-15 Score=104.82 Aligned_cols=99 Identities=22% Similarity=0.336 Sum_probs=78.7
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +.. ..++.+... ......|.|.++..+|+|.|
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~--~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y 81 (110)
T 2dm2_A 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQ--ISPKSDHYTIQRD----LDGTCSLHTTASTLDDDGNY 81 (110)
T ss_dssp CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCB--CCTTCSSEEEEEC----TTCEEEEEESSCCTTTCSCC
T ss_pred CCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEE--CCCCCCeEEEEEC----CCcEEEEEECCCChhhCEEE
Confidence 56666666677888999999999999999999999999887 433 233333211 11235799999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
+|.|.|..|.....+.|.|...|..|
T Consensus 82 ~C~a~N~~g~~~~~~~l~V~~~~~~P 107 (110)
T 2dm2_A 82 TIMAANPQGRISCTGRLMVQAVNSGP 107 (110)
T ss_dssp EEEEECTTCCEEECCCEEEECCSCCS
T ss_pred EEEEEECCCeEEEEEEEEEECCCCCC
Confidence 99999999999999999998877654
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-16 Score=112.19 Aligned_cols=111 Identities=19% Similarity=0.342 Sum_probs=85.2
Q ss_pred eeeEEEEEEecceEeeCCCcccccCCCcEEEEEEEEecCCCe-eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 215 RRNIAVEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 215 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
...+.|.|.++|.+.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+......++.+..... .....+.|.|.
T Consensus 4 ~~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~ 81 (122)
T 2cry_A 4 GSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST-EEGVISTLTIS 81 (122)
T ss_dssp SCCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEE-TTEEEEEEECT
T ss_pred ceEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEEc
Confidence 3456778888998877 6778889999999999999999996 9999999873221233443322111 11235689999
Q ss_pred ecccCCC-eEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 294 TIEKRQY-GSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 294 ~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
++..+|. |.|+|.|.|..|.....+.|.|...+.
T Consensus 82 ~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 116 (122)
T 2cry_A 82 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116 (122)
T ss_dssp TCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred CCChhhCCceEEEEEECCCCeEEEEEEEEECCCCC
Confidence 9999998 999999999999999999988875443
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.6e-15 Score=103.73 Aligned_cols=93 Identities=15% Similarity=0.290 Sum_probs=76.6
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++..... .....|.|.++..+|+|.|
T Consensus 13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~--l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y 85 (106)
T 1nct_A 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV--LSTSARHQVTTT-----KYKSTFEISSVQASDEGNY 85 (106)
T ss_dssp CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSC--CTTCSSEEEEEC-----SSEEEEEECCCCSSCCSEE
T ss_pred CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEE--CCCCCCEEEEEC-----CCEEEEEECcCCchhCEEE
Confidence 356667777788899999999999999999999999999987 544445443321 1357899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~ 323 (386)
+|.|.|..|..+.++.|.|.
T Consensus 86 ~C~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 86 SVVVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp EECCBCSSCBCCEEEEEEEC
T ss_pred EEEEEeCCCeEEEEEEEEEE
Confidence 99999999999999888774
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=9e-14 Score=96.59 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=72.3
Q ss_pred eeCCCcccccCCCcEEEEEEEEec-CCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEE
Q psy8823 229 TVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRA 307 (386)
Q Consensus 229 ~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 307 (386)
..++....+.+|+.+.|.|.+.|. |.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|+|.|
T Consensus 5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~--~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a 77 (97)
T 2bk8_A 5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQ--LENSEKYEITYE-----DGVAILYVKDITKLDDGTYRCKV 77 (97)
T ss_dssp ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEE--CCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEE
T ss_pred eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEE--CcCCCCEEEEEc-----CCeEEEEEecCChhhCeEEEEEE
Confidence 345556778899999999999997 8899999999987 555555544221 13558999999999999999999
Q ss_pred EcCCCceeeEEEEEEEe
Q psy8823 308 ANKLGTSEKTVELFESI 324 (386)
Q Consensus 308 ~n~~g~~~~~~~l~v~~ 324 (386)
.|..|....++.|.|..
T Consensus 78 ~n~~g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 78 VNDYGEDSSYAELFVKG 94 (97)
T ss_dssp ECSSCEEEEEEEEEETT
T ss_pred ECCCCeEeEEEEEEEEe
Confidence 99999999999988853
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=104.53 Aligned_cols=93 Identities=18% Similarity=0.290 Sum_probs=75.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec-CceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN-NQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +.. ..++... ..+.|.|.++..+|+|.|
T Consensus 8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~--~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y 77 (118)
T 2eo9_A 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVL--VSTQDSRIKQL--------ENGVLQIRYAKLGDTGRY 77 (118)
T ss_dssp SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSB--CCTTSTTEEEE--------ETTEEEEESCCGGGCCCE
T ss_pred CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEE--CcCCCCeEEEc--------cCCEEEEccCCcCCCEEE
Confidence 56666666677888999999999999999999999999887 332 2333221 245899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
+|.|.|..|....++.|.|...+.
T Consensus 78 ~C~a~n~~g~~~~~~~l~V~~~~~ 101 (118)
T 2eo9_A 78 TCIASTPSGEATWSAYIEVQEFGV 101 (118)
T ss_dssp EEEEECSSCEEEEECCEEEECCSC
T ss_pred EEEEEcCCCcEEEEEEEEEEeCCC
Confidence 999999999999999998887654
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=99.70 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=72.5
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+ .|.+.+.|++++.. +....++.+... .....|.|.++..+|+|.|+
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~--l~~~~r~~i~~~-----~~~~~L~I~~v~~~D~G~Y~ 77 (100)
T 2yuz_A 7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLP--VQESDRLKVVQK-----GRIHKLVIANALTEDEGDYV 77 (100)
T ss_dssp CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEE--CCCCSSEEEEEC-----SSEEEEEESSCCGGGCSEEE
T ss_pred CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEE--CCCCCcEEEEEe-----CCEEEEEECCCChhhCEEEE
Confidence 4455666677788999999999999 88899999999988 555555554321 13467999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEecCC
Q psy8823 305 CRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|.|.|. ..+.++.|.|..+|.
T Consensus 78 C~a~N~--~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 78 FAPDAY--NVTLPAKVHVISGPS 98 (100)
T ss_dssp EEESSS--CCCEEEEEEEECCSC
T ss_pred EEEcCC--CeeEEEEEEEeCCCC
Confidence 999998 556778888876654
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=99.28 Aligned_cols=86 Identities=17% Similarity=0.243 Sum_probs=70.0
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.|.| +.+.|++++.. +....++.. ....|.|.+++.+|+|.|+
T Consensus 9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~--~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~ 76 (95)
T 2ckn_A 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQ--LVESNRTRI---------TGEEVEVRDSIPADSGLYA 76 (95)
T ss_dssp SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBC--CCCCSSEEE---------CSSEEEESSCCGGGSEEEE
T ss_pred CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEe--cCCCCCEEE---------eCCEEEECCCChHHCEEEE
Confidence 34454555667788999999999999997 79999999987 444444332 2568999999999999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v 322 (386)
|.|.|..|..+.++.|.|
T Consensus 77 C~a~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 77 CVTSSPSGSDTTYFSVNV 94 (95)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEeccCCCcEEEEEEEEE
Confidence 999999999998888876
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.53 E-value=9.5e-14 Score=98.51 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=71.4
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCC---CeeEEEeCCeeeeee--cCceeEEeeeee-cCceeeeEEEEeecccCC
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPP---PAIVWIKEDTQQVLT--NNQHYSISHFAT-ADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d 299 (386)
|.+...+....+.+|++++|.|.+.|.|. |.+.|++++... .. ...++....... ........|.|.+++.+|
T Consensus 5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVD-LSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEE-GGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCccc-ccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 44555666777889999999999999998 899999987321 11 112333221111 112246789999999999
Q ss_pred CeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 300 YGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 300 ~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
+|.|+|.|.|..|..++++.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999885
|
| >3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-13 Score=106.57 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=104.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 222 (386)
....+.+|+++.|.|.+....+..+.|.-.-..... ........+.+.+++ +|.+.|.|.+.... ....+.+.|.|
T Consensus 10 ~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~--~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~-~~~~~~v~l~V 85 (196)
T 3bn3_B 10 RVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGT--QRGLRWLARQLVDIR-EPETQPVCFFRCAR-RTLQARGLIRT 85 (196)
T ss_dssp SEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEEE--EEETTEEEEEEEEEC-SSEECCEEEEEETT-EEEEEECEEEE
T ss_pred CCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCeeE--ccccCceEEEEEEEc-cCCCceEEEEECCC-CceEEEEEEEE
Confidence 445789999999999996543436777532111000 000112348889988 77788999987654 44678899999
Q ss_pred EecceE-eeCCCcccccCCCcEEEEEEEEec-CCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 223 EFAPVI-TVPKPRLGQALQYDMDLECHVEAY-PPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 223 ~~~p~~-~~~~~~~~~~~g~~~~l~C~~~g~-p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
+..|.. .+.+....+.+|+.++|.|.+.+. |.. +++|++++.. +.... +. .. ..........+++.....+
T Consensus 86 y~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~--l~~~~-~~-~~-~~~~~~~t~~~~~~~~r~D 160 (196)
T 3bn3_B 86 FQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQE--LIRRS-FA-GE-PPRARGAVLTATVLARRED 160 (196)
T ss_dssp EBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEE--EEEEE-CT-TS-CTTCCCEEEEEEEECCGGG
T ss_pred ecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEE--eeccc-cc-cc-cccccceeEEEEEeeeecc
Confidence 988863 333333458899999999999875 443 4899999987 32211 00 00 0001113456777777777
Q ss_pred CCeEEEEEEEcCCC
Q psy8823 299 QYGSYICRAANKLG 312 (386)
Q Consensus 299 d~G~Y~C~a~n~~g 312 (386)
|+..|+|.|.|..+
T Consensus 161 ~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 161 HGANFSCRAELDLR 174 (196)
T ss_dssp TTCEEEEEEEEECG
T ss_pred CCCeEEEEEEccCC
Confidence 77799999999887
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=99.35 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=73.5
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+.+..+.+|+.+.|.|.+ .|.+.+.|+|++..+. .+.++.+..+ ...++|.|
T Consensus 4 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~--------------~~~r~~i~~~--~~~~~L~I 65 (100)
T 2yuz_A 4 GSSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQ--------------ESDRLKVVQK--GRIHKLVI 65 (100)
T ss_dssp SSCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECC--------------CCSSEEEEEC--SSEEEEEE
T ss_pred CCCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECC--------------CCCcEEEEEe--CCEEEEEE
Confidence 4457788888888999999999999999 6778899999986542 2233433332 23458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+++.+|+|.|+|.+.|. ..+..+.|.|..+|.
T Consensus 66 ~~v~~~D~G~Y~C~a~N~---~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 66 ANALTEDEGDYVFAPDAY---NVTLPAKVHVISGPS 98 (100)
T ss_dssp SSCCGGGCSEEEEEESSS---CCCEEEEEEEECCSC
T ss_pred CCCChhhCEEEEEEEcCC---CeeEEEEEEEeCCCC
Confidence 999999999999999865 446677888887764
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=96.48 Aligned_cols=93 Identities=23% Similarity=0.262 Sum_probs=75.9
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe----eeEEEECCCCCCCCeEEEEEEecC
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+|.+.. .+....+.+|+.++|.|.+.|.|.+.+.|++++..+......... ...|.|.+++.+|+|.|+|.+.|.
T Consensus 7 pp~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 85 (114)
T 2cqv_A 7 GPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK 85 (114)
T ss_dssp CCEESC-CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred CCEEEe-CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence 455443 355678999999999999999999999999999888665544433 568999999999999999999999
Q ss_pred CCCceeeeEEEEEEecceE
Q psy8823 210 VGKGTRRNIAVEVEFAPVI 228 (386)
Q Consensus 210 ~~~~~~~~~~l~v~~~p~~ 228 (386)
.+. ....+.|.|...|..
T Consensus 86 ~g~-~~~~~~l~V~~~p~~ 103 (114)
T 2cqv_A 86 LGS-RQAQVNLTVVDKPDP 103 (114)
T ss_dssp SCE-EECCEEEEEECSCSC
T ss_pred CCc-EEEEEEEEEECCCCC
Confidence 886 566888888876653
|
| >3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-14 Score=116.89 Aligned_cols=174 Identities=19% Similarity=0.334 Sum_probs=105.5
Q ss_pred eEEEeCCccEEEEEEeee--eCCCeEEEEEcCee-----e---CC-----------CCceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGG--HPTPRISWRRENNA-----I---LP-----------TGGSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~~-----~---~~-----------~~~~~~------~~~~l~i~~~~~ 196 (386)
.+.+.+|++++|.|.+.+ .....+.|++.... + .. ..+... ....|.|.+++.
T Consensus 32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 111 (267)
T 3u1s_H 32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTA 111 (267)
T ss_dssp CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCG
T ss_pred CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCh
Confidence 356889999999999864 23467999984311 0 00 011111 123599999999
Q ss_pred CCCeEEEEEEecC-------C------------C-C----ceeeeEEEEEE----ecceEeeCCCcccccCCCcEEEEEE
Q psy8823 197 EDRGTYYCVAENG-------V------------G-K----GTRRNIAVEVE----FAPVITVPKPRLGQALQYDMDLECH 248 (386)
Q Consensus 197 ~d~g~y~C~~~~~-------~------------~-~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~ 248 (386)
+|+|.|.|.+.+. . . . .......+.|. .+|.+....+......|+.++|.|.
T Consensus 112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~ 191 (267)
T 3u1s_H 112 DDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL 191 (267)
T ss_dssp GGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEE
T ss_pred hhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEE
Confidence 9999999999620 0 0 0 01112345553 2444443333334467899999999
Q ss_pred EEe-cC-CCeeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 249 VEA-YP-PPAIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 249 ~~g-~p-~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+.+ +| ++.+.| ++.. +...... ......+..+...+.|.|.....+| |.|+|.+.|..+.......+.+
T Consensus 192 ~~~~~p~~~~v~W--~~~~--~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 263 (267)
T 3u1s_H 192 VKDYFPEPVTVSW--NSGA--LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 263 (267)
T ss_dssp EEEEBSSCCEEEE--GGGT--BCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EeEEECCCeEEEE--CCcc--cCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEccc
Confidence 987 45 347999 5443 2111110 0001112223345679999998889 9999999999877665555443
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=96.19 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=71.4
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+.. +.++.... ...+..+|.|.
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~--------------~~~~~~~~-~~~~~~~L~i~ 67 (99)
T 1g1c_A 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER--------------SDRIYWYW-PEDNVCELVIR 67 (99)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC--------------CSSEEEEE-EETTEEEEEEC
T ss_pred CCCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCC--------------CCCEEEEE-cCCCEEEEEEC
Confidence 3568888888888999999999999999999999999998865421 11111111 11245589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|.+.|..+. ....+.|.|.
T Consensus 68 ~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~ 97 (99)
T 1g1c_A 68 DVTGEDSASIMVKAINIAGE-TSSHAFLLVQ 97 (99)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred CCCcCCCEEEEEEEEECCCc-EEEEEEEEEe
Confidence 99999999999999987543 4556677765
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=99.02 Aligned_cols=102 Identities=23% Similarity=0.402 Sum_probs=78.3
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+.. ...++....+. .+..+|.|
T Consensus 12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~-------------~~~~~~~~~~~-~~~~~L~I 77 (116)
T 2kkq_A 12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQF-------------NTDRISLYQDN-TGRVTLLI 77 (116)
T ss_dssp CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCC-------------CBTTEEEEECT-TCEEEEEE
T ss_pred CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcC-------------CCCeEEEEeCC-CCeEEEEE
Confidence 45678888888999999999999999999888889999998865421 12333333222 24558999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCee
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 137 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|..
T Consensus 78 ~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~p~~ 113 (116)
T 2kkq_A 78 KDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARPNQ 113 (116)
T ss_dssp EEECGGGCEEEEEEEEETTEE-EEEEEEEEEECCSCC
T ss_pred CCCCcccCEEEEEEEEcCCCe-EEEEEEEEEeCCCCC
Confidence 999999999999999987554 467888888877643
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-14 Score=97.37 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=71.6
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+... .+..... ...+..+|.|.+
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~--------------~~~~~~~-~~~~~~~L~i~~ 68 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD--------------DLHKMIV-SEKGLHSLIFEV 68 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCC--------------SSSCEEE-ETTTEEEEEESS
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCC--------------CcEEEEE-cCCCeEEEEECC
Confidence 4677877788888999999999999998888999999987654211 1111111 112345899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
++.+|+|.|+|.+.|..+. .+..+.|.|...
T Consensus 69 v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~ 99 (100)
T 2kdg_A 69 VRASDAGAYACVAKNRAGE-ATFTVQLDVLAK 99 (100)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred CCcccCEEEEEEEEcCCCe-EEEEEEEEEEec
Confidence 9999999999999987554 577778877654
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=95.32 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=71.4
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++..+.. ...++... ...+..+|.|.
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~-------------~~~~~~~~--~~~~~~~L~i~ 67 (99)
T 1u2h_A 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRP-------------DQRRFAEE--AEGGLCRLRIL 67 (99)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCC-------------BTTEEEEE--CGGGEEEEEES
T ss_pred CCCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCC-------------CCCEEEEE--CCCCEEEEEEc
Confidence 3568888888888899999999999999888899999998865421 11122211 12344589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 68 ~~~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~ 97 (99)
T 1u2h_A 68 AAERGDAGFYTCKAVNEYGA-RQCEARLEVR 97 (99)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred cCCcCCCEEEEEEEEECCCc-eeEEEEEEEE
Confidence 99999999999999987544 4566677765
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=93.07 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=66.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+..++....+.+|+.+.|.|.+.+ +++.+.|+++|.. +....++.+... .....|.|.++..+|+|.|+
T Consensus 5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~--i~~~~~~~i~~~-----g~~~~L~I~~v~~~D~G~Y~ 76 (93)
T 1waa_A 5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQP--LAASPDCEIIED-----GKKHILILHNCQLGMTGEVS 76 (93)
T ss_dssp CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEE--CCCBTTEEEEEE-----TTEEEEEECSCCGGGCEEEE
T ss_pred CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEE--CcCCCCEEEEEE-----CCEEEEEECCCChhhCEEEE
Confidence 456666777888999999999999975 5578999999988 555555544321 12468999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFES 323 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~ 323 (386)
|.|.|. ..+..|.|.
T Consensus 77 C~a~n~----~~sa~L~V~ 91 (93)
T 1waa_A 77 FQAANT----KSAANLKVK 91 (93)
T ss_dssp EEETTE----EEEEEEEEE
T ss_pred EEECCC----cEEEEEEEE
Confidence 999874 456666664
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=94.82 Aligned_cols=96 Identities=25% Similarity=0.299 Sum_probs=73.5
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .+.++.... +.+|.|
T Consensus 5 ~~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~-------------~~~~~~~~~-----~~~L~i 66 (100)
T 2edj_A 5 SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPG-------------RDPRATIQE-----QGTLQI 66 (100)
T ss_dssp CCSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESS-------------SCSSCEECT-----TCCEEE
T ss_pred CCCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCC-------------CCCCEEEcC-----CCEEEE
Confidence 45678888888888899999999999999999999999998765421 112222221 227999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|
T Consensus 67 ~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~ 100 (100)
T 2edj_A 67 KNLRISDTGTYTCVATSSSGE-TSWSAVLDVTESG 100 (100)
T ss_dssp ESCCTTTCCEEEEEEECSSCC-CBCCEEEEEESCC
T ss_pred ccCCcccCEEEEEEEEcCCCC-EEEEEEEEEecCC
Confidence 999999999999999987554 3677788877653
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.5e-14 Score=98.42 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=71.9
Q ss_pred eEeeCCCcccccCCCcEEEEEEEEec---CCCeeEEEeCCeeeeeec--CceeEEee-eeecCceeeeEEEEeecccCCC
Q psy8823 227 VITVPKPRLGQALQYDMDLECHVEAY---PPPAIVWIKEDTQQVLTN--NQHYSISH-FATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~C~~~g~---p~~~~~W~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
.+...+....+.+|++++|.|.+.|. |.|.|.|+|+... .+.. ..++.+.. +..........|.|.++...|+
T Consensus 14 ~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 92 (118)
T 2edn_A 14 VFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWL-ELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR 92 (118)
T ss_dssp SCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTC-CCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTC
T ss_pred eEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEe-ccCCCCccEEEeccccccccccceEEEEEeeCChhhC
Confidence 34555677889999999999999875 7889999997421 1111 22333321 1112223468899999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEEe
Q psy8823 301 GSYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|+|+|.|..|..++.+.|.|..
T Consensus 93 G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 93 GYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp SCEEEEEECSSCEEEEEECCEEEC
T ss_pred EEEEEEEEEcCCcEEEEEEEEEEc
Confidence 999999999999999999998875
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=93.46 Aligned_cols=90 Identities=13% Similarity=0.073 Sum_probs=66.8
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..++.|...+.+..+.+|+.++|.|.+.+ +.+.+.|+|++..+. .+.++.+..+ ...++|.|.
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~--------------~~~~~~i~~~--g~~~~L~I~ 65 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLA--------------ASPDCEIIED--GKKHILILH 65 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECC--------------CBTTEEEEEE--TTEEEEEEC
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECc--------------CCCCEEEEEE--CCEEEEEEC
Confidence 46788888889999999999999999975 447799999886542 1233333322 234589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
+++.+|+|.|+|.+.|. .....|.|..
T Consensus 66 ~v~~~D~G~Y~C~a~n~-----~~sa~L~V~~ 92 (93)
T 1waa_A 66 NCQLGMTGEVSFQAANT-----KSAANLKVKE 92 (93)
T ss_dssp SCCGGGCEEEEEEETTE-----EEEEEEEEEC
T ss_pred CCChhhCEEEEEEECCC-----cEEEEEEEEc
Confidence 99999999999998642 3455666653
|
| >2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-13 Score=105.24 Aligned_cols=172 Identities=15% Similarity=0.189 Sum_probs=109.0
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
+...|....+.+|++|+|.|.+.+.....+.|||.........+.. ..... ....+|+....+.....++|.|.+++.
T Consensus 6 v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~-~~~~~Rfs~~~~~~~~~~sL~I~~~~~ 84 (210)
T 2eys_A 6 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSEN-TKSNGRYTATLDADTKQSSLHITASQL 84 (210)
T ss_dssp EEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCS-EEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred EEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCC-CccCCCEEEEEcCCCCEEEEEEccCCc
Confidence 4455667789999999999999766556799999764332222221 11111 124678887766667888999999999
Q ss_pred CCCeEEEEEeEEcc---cc-eeeeEEEEEEecC-----CeeecCCCceEEEeCCccEEEEEEeeeeCCC-eEEEEEcCee
Q psy8823 106 TDAGYYRCQVIIGI---NN-KISAEVDLQVRRP-----PVISDNSTRSLVVSEGQPVQLECFAGGHPTP-RISWRRENNA 175 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~---~~-~~~~~~~l~v~~~-----p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~ 175 (386)
+|+|.|.|.+.+.. .. .......|.|... |.+....+ ..+.++|.|.+.+..+. .+.+.+
T Consensus 85 ~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~------~~~~~tl~Cl~~gf~P~~~v~~~~---- 154 (210)
T 2eys_A 85 SDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRD------SKSSDKSVCLFTDFDSQTNVSQSK---- 154 (210)
T ss_dssp GGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECC------CSSSSCEEEEEESCCTTCCCCCCS----
T ss_pred ccCceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCC------CCCCceEEEEcccccCCcEecccc----
Confidence 99999999987531 11 1112345666532 22211111 12378999999887554 332211
Q ss_pred eCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 176 ILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 176 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
...........|.+..+...+.|.|.|.+.+..+
T Consensus 155 --~~~~~~t~~~~l~~~~~~~~~~~~~~w~~~~~~~ 188 (210)
T 2eys_A 155 --DSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA 188 (210)
T ss_dssp --STTEEECCCEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred --CcceEccCchhcchhcccccccchhhccCCCceE
Confidence 1111222445788888888999999999887554
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-13 Score=95.63 Aligned_cols=85 Identities=15% Similarity=0.261 Sum_probs=69.2
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE---eeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
......+.+|+.+.|.|.+.|.|.+.+.|++++..+........ ....|.|.++..+|+|.|+|.+.|..+. ....
T Consensus 30 ~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~ 108 (118)
T 2e7c_A 30 LRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMK-DTAT 108 (118)
T ss_dssp TSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCE-ECCE
T ss_pred cCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCe-EEEE
Confidence 34667899999999999999999999999999988753222111 1456999999999999999999999886 6677
Q ss_pred EEEEEEecc
Q psy8823 218 IAVEVEFAP 226 (386)
Q Consensus 218 ~~l~v~~~p 226 (386)
+.|.|..+|
T Consensus 109 ~~l~V~~~P 117 (118)
T 2e7c_A 109 IRIRVVEKA 117 (118)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 888887655
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=92.80 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=66.6
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +... ....|.|.++..+|+|.|+|
T Consensus 4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~--~~~~--------------~~~~L~i~~v~~~d~G~Y~C 67 (91)
T 3bfo_A 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP--LTHE--------------TKKLYMVPYVDLEHQGTYWC 67 (91)
T ss_dssp CEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEE--CTTC--------------CSSEEEESSCCGGGCEEEEE
T ss_pred eEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCee--CCcC--------------CCCeEEECCCCHHhCEEEEE
Confidence 4455556667788999999999999999999999999876 3222 23579999999999999999
Q ss_pred EEEcCCCcee-eEEEEEEEe
Q psy8823 306 RAANKLGTSE-KTVELFESI 324 (386)
Q Consensus 306 ~a~n~~g~~~-~~~~l~v~~ 324 (386)
.|.|..|... ..+.|.|.+
T Consensus 68 ~a~n~~g~~~s~~~~l~V~~ 87 (91)
T 3bfo_A 68 HVYNDRDSQDSKKVEIIIDE 87 (91)
T ss_dssp EEECSSCEEECCCEEEEEC-
T ss_pred EEEcCCCCEEeeeEEEEEeh
Confidence 9999999755 567777643
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=97.05 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=76.9
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. ...++....+ ..+...|.|
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~-------------~~~~~~~~~~-~~~~~~L~i 70 (110)
T 2dm2_A 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP-------------KSDHYTIQRD-LDGTCSLHT 70 (110)
T ss_dssp CSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCT-------------TCSSEEEEEC-TTCEEEEEE
T ss_pred CCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC-------------CCCeEEEEEC-CCcEEEEEE
Confidence 34678888888888899999999999999888899999998865421 1122333222 234458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.
T Consensus 71 ~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 71 TASTLDDDGNYTIMAANPQGR-ISCTGRLMVQAVNS 105 (110)
T ss_dssp SSCCTTTCSCCEEEEECTTCC-EEECCCEEEECCSC
T ss_pred CCCChhhCEEEEEEEEECCCe-EEEEEEEEEECCCC
Confidence 999999999999999987654 46777888877654
|
| >3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-15 Score=115.82 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=98.8
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
...|....+.+|++|+|.|.+.+.....+.|||.........+....+.......+|+....+...++++|.|.+++.+|
T Consensus 4 ~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~D 83 (185)
T 3c6l_A 4 RQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGD 83 (185)
Confidence 33456677899999999999876555579999976432211111111111112355666654445567799999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEecC-----CeeecCCCceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCc
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVRRP-----PVISDNSTRSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAILPTGG 181 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~ 181 (386)
+|.|.|.+.+. .........|.|... |.+....+ ..+.++|.|.+.| +|.++|.|..+.......+.
T Consensus 84 sG~Y~C~~~~~-~~~fg~gT~L~V~~~~~~~~P~V~~~~~------~~~~vtL~C~~~gf~P~p~v~~~~~~~~~~~~~~ 156 (185)
T 3c6l_A 84 SATYFCAASDN-RIFFGDGTQLVVKPNIQNPEPAVYQLKD------PRSQDSTLCLFTDFDSQINVPKTMESGTFITDKT 156 (185)
Confidence 99999998641 111112234555432 22221111 1227999999977 67889999876654422221
Q ss_pred eEE-eeeEEEECCCCCCCCe-EEEEE
Q psy8823 182 SIY-RGSILKIPQITKEDRG-TYYCV 205 (386)
Q Consensus 182 ~~~-~~~~l~i~~~~~~d~g-~y~C~ 205 (386)
... ..-.+.+..+..-|.| .+.|.
T Consensus 157 ~~~~~~~~~~~~~~~~w~~~~~~~c~ 182 (185)
T 3c6l_A 157 VLDMKAMDSKSNGAIAWSNQTSFTCQ 182 (185)
Confidence 111 1122444444444444 67775
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-14 Score=98.89 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=76.6
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+....+.+|+.++|.|.+.+.+.+.+.|++++..+... .+..... ...+..+|.|
T Consensus 6 ~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~--------------~~~~~~~-~~~~~~~L~i 70 (110)
T 2dm3_A 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPD--------------SAHKMLV-RENGVHSLII 70 (110)
T ss_dssp CCCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCC--------------SSEEEEE-CTTSCEEEEE
T ss_pred CCCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCC--------------CceEEEE-ecCCeEEEEE
Confidence 456788988888889999999999999999898999999988654211 1111111 1123458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCee
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 137 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|..
T Consensus 71 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~ 106 (110)
T 2dm3_A 71 EPVTSRDAGIYTCIATNRAGQ-NSFSLELVVAAKESG 106 (110)
T ss_dssp SSCCGGGCSBBCEEEECSSCE-EEECCEEEEECCCCS
T ss_pred eeCCcccCEEEEEEEECCCCE-EEEEEEEEEeCCCCC
Confidence 999999999999999987544 577888888876643
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=94.84 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=68.9
Q ss_pred EeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc--eeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 228 ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ--HYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 228 ~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
+...+....+.+|+.++|.|.+.+ |.+.+.|++++.. +.... ++.+... .....|.|.++..+|+|.|+|
T Consensus 10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~--l~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C 81 (103)
T 1x44_A 10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEE--IIPGPKSRYRIRVE-----GKKHILIIEGATKADAAEYSV 81 (103)
T ss_dssp CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEE--CCCSTTCSEEEEEE-----TTEEEEEEEEECTTTCSEEEE
T ss_pred eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEE--CCCCCceEEEEEEc-----CCEEEEEECCCCcccCEEEEE
Confidence 455566677889999999999977 7789999999988 54444 3343321 124689999999999999999
Q ss_pred EEEcCCCceeeEEEEEEEecCCCC
Q psy8823 306 RAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|.| .+.++.|.|...|.++
T Consensus 82 ~a~n----~~~~~~l~V~~~p~p~ 101 (103)
T 1x44_A 82 MTTG----GQSSAKLSVDLKSGPS 101 (103)
T ss_dssp EETT----EEEEEEEEEECCCSCC
T ss_pred EECC----CcEEEEEEEeCCCCCC
Confidence 9988 5777888888766543
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-13 Score=93.89 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=73.1
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.... .....+|.|.
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~--------------~~~~~~~~--~~~~~~L~i~ 69 (103)
T 3qp3_A 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQE--------------SSKIHYTN--TSGVLTLEIL 69 (103)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCC--------------CSSEEEEE--ETTEEEEEEC
T ss_pred CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC--------------CCCEEEEE--CCCEEEEEEc
Confidence 3567888888888899999999999999999999999998865421 12222221 1234589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|...
T Consensus 70 ~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~ 101 (103)
T 3qp3_A 70 DCHTDDSGTYRAVCTNYKGE-ASDYATLDVTGG 101 (103)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred CCCcccCEEEEEEEEeCCCc-EEEEEEEEEECC
Confidence 99999999999999987544 466777777643
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=95.71 Aligned_cols=83 Identities=14% Similarity=0.300 Sum_probs=65.1
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
...+.+|+.+.|.|.+.|.|.|.+.|++++.. +........... ......|.|.++..+|+|.|+|.|.|..|.
T Consensus 17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~--~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 90 (100)
T 3caf_A 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGS 90 (100)
T ss_dssp EEEECTTCCEEEECCEEEESCCEEEEEETTEE--CCGGGSTTCCEE----EGGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred EEEecCCCEEEEEEEccccCCCEEEEEECCEE--cccccccccEEE----ecCeEEEEEccCCcCCCEEEEEEEEeCCCE
Confidence 45677899999999999999999999999987 433222110000 012457999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy8823 314 SEKTVELFE 322 (386)
Q Consensus 314 ~~~~~~l~v 322 (386)
...++.|.|
T Consensus 91 ~~~~~~l~V 99 (100)
T 3caf_A 91 INHTYHLDV 99 (100)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 998888876
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=96.04 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=72.3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++.. +....++.+... .....|.|.++..+|+|.|+
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~--~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~ 79 (103)
T 2edf_A 8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKA--IRKSQKYDVVCE-----GTMAMLVIRGASLKDAGEYT 79 (103)
T ss_dssp CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCB--CCCSSSEEEEEE-----TTEEEEEESSCCTTTCSEEE
T ss_pred CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEE--ccCCCCEEEEEC-----CCEEEEEECCCCcccCEEEE
Confidence 455666667788899999999999987 7889999999988 544445444321 12567999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 305 CRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
|.|.| ...++.|.|...|..+
T Consensus 80 C~a~n----~~~~~~l~V~~~p~~~ 100 (103)
T 2edf_A 80 CEVEA----SKSTASLHVEEKASGP 100 (103)
T ss_dssp EECSS----CEEEEEEEECCCSSSS
T ss_pred EEEcc----CCcEEEEEEeCCCCCC
Confidence 99999 4677888887766544
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=92.17 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.++.+...|....+.+|+++.|.|.+.+.|.+.+.|++++..+... ....|.|.+
T Consensus 2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-------------------------~~~~L~i~~ 56 (91)
T 3bfo_A 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------------------------TKKLYMVPY 56 (91)
T ss_dssp CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-------------------------CSSEEEESS
T ss_pred CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-------------------------CCCeEEECC
Confidence 3567888888888999999999999999899999999987543110 012799999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
++.+|+|.|+|.+.|..+...+..+.|.|..
T Consensus 57 v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 87 (91)
T 3bfo_A 57 VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87 (91)
T ss_dssp CCGGGCEEEEEEEECSSCEEECCCEEEEEC-
T ss_pred CCHHhCEEEEEEEEcCCCCEEeeeEEEEEeh
Confidence 9999999999999987776556667777753
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=95.05 Aligned_cols=104 Identities=19% Similarity=0.310 Sum_probs=72.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
..|.+...+....+.+|++++|.|.+.+.+.+.+.|++++.... .. +......+.++..... ...+.+|.|.+
T Consensus 5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~----~~--~~~~~~~~~r~~~~~~-~~~~~~L~I~~ 77 (108)
T 3m45_A 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTL----YF--DDKKALRDNRIELVRA-SWHELSISVSD 77 (108)
T ss_dssp ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEE----EE--TTEECSCCTTEEEEEE-SSSEEEEEECS
T ss_pred cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceE----EE--cCCcccccCcEEEeec-CCCcEEEEECC
Confidence 34667777888899999999999999988888899999765210 00 1111112334443322 22567999999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
++.+|+|.|+|.+.+ .+..+..+.|.|..+|
T Consensus 78 v~~~D~G~Y~C~~~n--~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 78 VSLSDEGQYTCSLFT--MPVKTSKAYLTVLGVP 108 (108)
T ss_dssp CCGGGCEEEEEEECS--SSCEEEEEEEEEECCC
T ss_pred CChhHCeEEEEEEEc--CCCcEEEEEEEEEcCC
Confidence 999999999999987 3455777888887665
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=95.67 Aligned_cols=99 Identities=27% Similarity=0.502 Sum_probs=65.3
Q ss_pred EEEEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEE
Q psy8823 127 VDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 127 ~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C 204 (386)
+.+.+..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|
T Consensus 3 ~~v~~~~~P~~~~~-~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 81 (108)
T 3kvq_A 3 LTVLERVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC 81 (108)
T ss_dssp --------CCCBSC-CCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred eeECccCCCceecC-CCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEE
Confidence 44566667766654 4567889999999999999999999999999988765544333 34689999999999999999
Q ss_pred EEecCCCCceeeeEEEEEEecce
Q psy8823 205 VAENGVGKGTRRNIAVEVEFAPV 227 (386)
Q Consensus 205 ~~~~~~~~~~~~~~~l~v~~~p~ 227 (386)
.+.|..+. ....+.|.|..+|.
T Consensus 82 ~a~n~~g~-~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 82 QACSVLGC-AKVEAFFIIEGAQE 103 (108)
T ss_dssp EEC----C-EEEEEEEEEEC---
T ss_pred EEEeCCCc-eEEEEEEEEeCCCc
Confidence 99999887 56678888877654
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-13 Score=94.33 Aligned_cols=104 Identities=19% Similarity=0.293 Sum_probs=71.5
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC---CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA---QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+.|...|.+..+.+|++++|.|.+.+. |.+.|.|||+.... .....+......+ .+ .......+++|.|
T Consensus 7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~----~~~~~~~~~~~~~-~~--~~~~~~~~~~L~I 79 (126)
T 2dav_A 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMD----LASKAGKHLQLKE-TF--ERHSRVYTFEMQI 79 (126)
T ss_dssp SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCC----HHHHTTSSEEEEE-EE--ETTTTEEEEEEEE
T ss_pred ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcc----cCCCCCceEEEcc-cc--ccccccceEEEEE
Confidence 3557778888889999999999999864 77899999964211 0000111111111 01 1111223569999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEec-CC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRR-PP 135 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p 135 (386)
.+++.+|+|.|+|++.|.. +..+..+.|.|.+ ++
T Consensus 80 ~~v~~~DaG~Y~Cevsn~~-g~~~~~~~L~V~~~~~ 114 (126)
T 2dav_A 80 IKAKDNFAGNYRCEVTYKD-KFDSCSFDLEVHESTG 114 (126)
T ss_dssp CSCCTTSCEEEEEEEECSS-CEEEECCEEEEECCCC
T ss_pred ccCCcccCEEEEEEEEeCC-CcEEEEEEEEEEecCC
Confidence 9999999999999999874 5678889999988 44
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=96.39 Aligned_cols=93 Identities=12% Similarity=0.159 Sum_probs=69.4
Q ss_pred cceEeeCCCc---ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKPR---LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~~---~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+|.+...+.. ..+.+|+.++|.|.+.+.|.+ +.|++++.. +....++.+... .....|.|.+++.+|+|
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~--~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G 78 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQK--VEESELLVVKMD-----GRKHRLILPEAKVQDSG 78 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEE--CCCBTTBEEEEE-----TTEEEEEESSCCTTTCE
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEE--CCCCCCEEEEeC-----CCEEEEEECCCChhhCE
Confidence 3444444444 577899999999999999988 999999987 544444433321 13568999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 302 SYICRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
.|+|.|.|..+ .+.|.|...|.++
T Consensus 79 ~Y~C~a~n~~~----~~~l~V~~~P~pp 102 (104)
T 2e6p_A 79 EFECRTEGVSA----FFGVTVQDPSGPS 102 (104)
T ss_dssp EEEEECSSCCC----CEEEEEECCCCSS
T ss_pred EEEEEECCceE----EEEEEEcCCCCCc
Confidence 99999999743 6777777776644
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=91.51 Aligned_cols=78 Identities=18% Similarity=0.356 Sum_probs=60.9
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.+.+.+|+++.|.|.+.+ |.|.+.|++++.. +....++.+... .....|.|.++..+|+|.|+|.|.|
T Consensus 5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~--l~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~n---- 72 (84)
T 2lu7_A 5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGER--LASQGRVQLEQA-----GARQVLRVQGARSGDAGEYLCDAPQ---- 72 (84)
T ss_dssp CEEECTTSCEEEECCCSC-CSTTCEEEETTEE--CCCCSSEEEEEC-----SSCEEEEESSCSSTTCEEEEEECTT----
T ss_pred EEEEecCCCEEEEEEECC-CCcEEEEEECCEE--ccccccEEEeec-----CCeEEEEecCCCCcccEEEEEEECC----
Confidence 456778999999999955 8889999999998 666665554321 1346799999999999999999855
Q ss_pred eeeEEEEEEE
Q psy8823 314 SEKTVELFES 323 (386)
Q Consensus 314 ~~~~~~l~v~ 323 (386)
.+.++.|.|.
T Consensus 73 ~~~~a~l~V~ 82 (84)
T 2lu7_A 73 DSRIFLVSVE 82 (84)
T ss_dssp TCEEEEEEEC
T ss_pred EEEEEEEEEE
Confidence 4566777764
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=95.92 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=67.7
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
....+.+|+.+.|.|.+.|.| |.+.|++++.. +....++.+ ....|.|.++..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~--~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~n~~g 78 (99)
T 2cr3_A 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQ--LAESNRTRI---------TGEEVEVQDSVPADSGLYACVTSSPSG 78 (99)
T ss_dssp EECCBCTTSCEEEECCCCSSC-CEEEEEESSSB--CCCCSSEEE---------CSSEEEETTCCTTTCEEEEEEEEETTE
T ss_pred cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEE--CCCCCcEEE---------ECCEEEEccCCHHHCEEEEEEEEeCCc
Confidence 345678899999999999886 79999999977 444334332 246899999999999999999999999
Q ss_pred ceeeEEEEEEEecCC
Q psy8823 313 TSEKTVELFESIIPV 327 (386)
Q Consensus 313 ~~~~~~~l~v~~~p~ 327 (386)
.....+.|.|...|.
T Consensus 79 ~~~~~~~l~V~~~~~ 93 (99)
T 2cr3_A 79 SDTTYFSVNVSDALP 93 (99)
T ss_dssp EEEEEEEECBCSCCS
T ss_pred eEEEEEEEEEecCCC
Confidence 998888888876554
|
| >4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-12 Score=98.98 Aligned_cols=178 Identities=20% Similarity=0.318 Sum_probs=111.5
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....++.|+++.|.|.+++... ..+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|.+.+
T Consensus 6 eSG~~lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~s 85 (254)
T 4f9p_D 6 QSGAEVVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSS 85 (254)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEcc
Confidence 344566899999999999987643 448899965544322221 11 1111111 2357888888888999999999
Q ss_pred cCCCCCeEEEEEeEEccccee-eeEEEEEEecC----C----------------eeecCCCceEEEeCCccEEEEEEeee
Q psy8823 103 IQETDAGYYRCQVIIGINNKI-SAEVDLQVRRP----P----------------VISDNSTRSLVVSEGQPVQLECFAGG 161 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~----p----------------~~~~~~~~~~~~~~g~~v~l~C~~~~ 161 (386)
++.+|++.|.|.-... ... -.-..++|... | ......+..+.+.+|+.++|.|.+..
T Consensus 86 L~~eDTAvYYCAr~~~--~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~ 163 (254)
T 4f9p_D 86 LTSDDSAVYFCARSDY--GAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQ 163 (254)
T ss_dssp CCGGGCEEEECEESSS--CCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESS
T ss_pred CCCCCCEEEEEEecCC--CCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccC
Confidence 9999999999953211 000 01123333210 1 11123356677899999999999865
Q ss_pred eCCCeEEEEEc--Cee---eC-CC-------CceEE-----eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 162 HPTPRISWRRE--NNA---IL-PT-------GGSIY-----RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 162 ~~~~~v~W~~~--~~~---~~-~~-------~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
.-...+.||+. |+. +. .. ..+.. ...+|+|.+++.+|.+.|.|.-.+.
T Consensus 164 ~~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~q~~~ 229 (254)
T 4f9p_D 164 SISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSNS 229 (254)
T ss_dssp CCTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEEECSS
T ss_pred cccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEeecCC
Confidence 44456899873 221 10 00 01111 1347999999999999999976543
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8.2e-13 Score=90.87 Aligned_cols=87 Identities=23% Similarity=0.335 Sum_probs=67.7
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
+|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+........ ....|.|.++..+|+|.|+|.+.|.
T Consensus 2 ~P~i~~-~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 80 (93)
T 1wit_A 2 KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE 80 (93)
T ss_dssp CCEECC-CCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred CCeEEc-CCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcC
Confidence 344433 345778999999999999999999999999999 76644322222 2467999999999999999999999
Q ss_pred CCCceeeeEEEEE
Q psy8823 210 VGKGTRRNIAVEV 222 (386)
Q Consensus 210 ~~~~~~~~~~l~v 222 (386)
.|. .+..+.|.|
T Consensus 81 ~G~-~~~~~~l~V 92 (93)
T 1wit_A 81 LGE-DEAIFEVIV 92 (93)
T ss_dssp TEE-EEEEEEEEE
T ss_pred CCe-EEEEEEEEE
Confidence 886 556666655
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.2e-13 Score=94.03 Aligned_cols=99 Identities=12% Similarity=0.171 Sum_probs=72.0
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecC------ceeEEeeeeecCceeeeEEEEeecc
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNN------QHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
..+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++........ .++..... ......|.|.+++
T Consensus 4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~I~~v~ 79 (108)
T 3m45_A 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISVSDVS 79 (108)
T ss_dssp ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEE----SSSEEEEEECSCC
T ss_pred ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeec----CCCcEEEEECCCC
Confidence 3445555566778888999999999999999899999998763111111 12222111 1146789999999
Q ss_pred cCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 297 KRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
.+|+|.|+|.|.| .|..+..+.|.|..+|
T Consensus 80 ~~D~G~Y~C~~~n-~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 80 LSDEGQYTCSLFT-MPVKTSKAYLTVLGVP 108 (108)
T ss_dssp GGGCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred hhHCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence 9999999999999 8888899999887654
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.2e-13 Score=100.53 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=76.2
Q ss_pred EEEecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEe-----eeEEEECCCCCCCCeEEE
Q psy8823 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GSILKIPQITKEDRGTYY 203 (386)
Q Consensus 129 l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~ 203 (386)
+.+..+|.+... +....+.+|+.++|.|.+.|.|.+.+.|++++..+......... ...|.|.+++..|+|.|+
T Consensus 36 ~~v~~~P~~~~~-~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 114 (154)
T 1fhg_A 36 EKPHVKPYFTKT-ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114 (154)
T ss_dssp CCCCEEEEEEEC-CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEE
T ss_pred ccCCCCCeEEcc-CCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEE
Confidence 344445555543 34567899999999999999999999999999888665544332 358999999999999999
Q ss_pred EEEecCCCCceeeeEEEEEEecceEeeC
Q psy8823 204 CVAENGVGKGTRRNIAVEVEFAPVITVP 231 (386)
Q Consensus 204 C~~~~~~~~~~~~~~~l~v~~~p~~~~~ 231 (386)
|.+.|..+. ....+.|.|..+|.+...
T Consensus 115 C~a~N~~G~-~~~~~~l~V~~~p~~~~~ 141 (154)
T 1fhg_A 115 CKAVNSLGE-ATCTAELLVETMGKEGEG 141 (154)
T ss_dssp EEEEETTEE-EEEEEEEEEECC------
T ss_pred EEEEECCCe-EEEEEEEEEeCcCcCCCC
Confidence 999999887 567888888887765543
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=97.48 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=74.4
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++..+.. .+.++....+ .+|.|.
T Consensus 6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~-------------~~~~~~~~~~-----~~L~i~ 67 (118)
T 2eo9_A 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVST-------------QDSRIKQLEN-----GVLQIR 67 (118)
T ss_dssp CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCT-------------TSTTEEEEET-----TEEEEE
T ss_pred CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcC-------------CCCeEEEccC-----CEEEEc
Confidence 4578888888888899999999999999888899999998865421 1222322221 279999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCee
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 137 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|..++..
T Consensus 68 ~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~p 102 (118)
T 2eo9_A 68 YAKLGDTGRYTCIASTPSGE-ATWSAYIEVQEFGVP 102 (118)
T ss_dssp SCCGGGCCCEEEEEECSSCE-EEEECCEEEECCSCC
T ss_pred cCCcCCCEEEEEEEEcCCCc-EEEEEEEEEEeCCCC
Confidence 99999999999999987554 466777888876543
|
| >1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-12 Score=103.47 Aligned_cols=155 Identities=21% Similarity=0.331 Sum_probs=94.6
Q ss_pred CceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--e---eCC---------CCceEEe------eeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--TPRISWRRENN--A---ILP---------TGGSIYR------GSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~---~~~---------~~~~~~~------~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|.+.+.+ ...+.|++... . +.. ..+.... ...|.|.+++.+|+
T Consensus 8 p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds 87 (229)
T 1hxm_A 8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDE 87 (229)
T ss_dssp CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred CCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHC
Confidence 4567789999999999997543 45799998531 1 100 1111111 24799999999999
Q ss_pred eEEEEEEecCCC------C-ceeeeEEEEEEe------cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCe
Q psy8823 200 GTYYCVAENGVG------K-GTRRNIAVEVEF------APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDT 264 (386)
Q Consensus 200 g~y~C~~~~~~~------~-~~~~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~ 264 (386)
|.|.|.+.+... . .......|.|.. +|.+... +..++|.|.+.|. |.+ .+.|.++ .
T Consensus 88 g~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~--------~~~~~L~C~~~g~~P~~i~v~W~~~-~ 158 (229)
T 1hxm_A 88 GSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVM--------KNGTNVACLVKEFYPKDIRINLVSS-K 158 (229)
T ss_dssp EEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEE--------EETTEEEEEEESCBSSCCEEEEECS-S
T ss_pred eEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEc--------CCCCeEEEEEEEEeCCCEEEEEecC-C
Confidence 999999987531 1 112234566653 3332221 1235899999875 554 8999999 5
Q ss_pred eeeeecCceeEEeeeeecCceeeeEEEEeec-ccCCCeEEEEEEEcCCCce
Q psy8823 265 QQVLTNNQHYSISHFATADEFTDTTIRVITI-EKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~a~n~~g~~ 314 (386)
. +....... .. . .++.+.+... ..+|.|.|+|.|.|..+..
T Consensus 159 ~--~~~~~~~~-~~--~----~dg~y~~~~~~~~~~~~~ytC~V~h~~~~~ 200 (229)
T 1hxm_A 159 K--ITEFDPAI-VI--S----PSGKYNAVKLGKYEDSNSVTCSVQHDNKTV 200 (229)
T ss_dssp E--EEECCCEE-EE--C----TTSSEEEEEEEEETTTTTCEEEEEETTEEE
T ss_pred E--EecCccce-EE--C----CCCcEEEEECcccCCCCcEEEEEEeCCCCc
Confidence 5 32221111 10 1 1223333333 3478899999999997544
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-12 Score=91.61 Aligned_cols=94 Identities=16% Similarity=0.320 Sum_probs=71.5
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. .+.++....+ ....+|.|.
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~--------------~~~~~~~~~~--~~~~~L~i~ 67 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT--------------QGGKYKLSED--KGGFFLEIH 67 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC--------------SSSSEEEEEE--TTEEEEEEC
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECc--------------CCCCEEEEEe--CCEEEEEEC
Confidence 457888888888899999999999999988889999999876542 1223333221 234589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 68 ~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 97 (99)
T 3puc_A 68 KTDTSDSGLYTCTVKNSAGS-VSSSCKLTIK 97 (99)
T ss_dssp SCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred CCCcccCEEEEEEEEeCCCc-EeEEEEEEEE
Confidence 99999999999999986544 4666666664
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=93.18 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=69.8
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++..+... .... ..+..+|.|
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~---------------~~~~----~~~~~~L~i 68 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---------------RSTC----EAGVAELHI 68 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSC---------------CCEE----ETTEEEEEE
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECccc---------------ceEe----eCCeEEEEE
Confidence 345788888888888999999999999999898999999988654211 0000 123458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
.+++.+|+|.|+|.+.|..+. .+..+.|.|
T Consensus 69 ~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V 98 (99)
T 2yr3_A 69 QDALPEDHGTYTCLAENALGQ-VSCSAWVTV 98 (99)
T ss_dssp CSCCTTCCBCEEEEEECSSCE-EEEECCEEE
T ss_pred CCCChhhCEEEEEEEEECCCe-EEEEEEEEE
Confidence 999999999999999977554 455666655
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=92.37 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=68.4
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccccCCceeEEeccceeee----cCCCcce
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIR----YDTASST 95 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 95 (386)
..|.|...|....+.+|++++|.|.+.+.|. +.|.|+|++.... .... ..++.+. .......
T Consensus 3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~ 71 (108)
T 3cx2_A 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDL----SSKV-------GQHLQLHDSYDRASKVYL 71 (108)
T ss_dssp CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEG----GGGC-------BTTEEEEEEEETTTTEEE
T ss_pred CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccc----cccC-------CceEEEeeEEecccccce
Confidence 4567777888888999999999999998887 8899999762110 0000 1112111 1112245
Q ss_pred EEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 96 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
.+|.|.+++.+|+|.|+|.+.|..+ ..+..+.|.|.
T Consensus 72 ~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~L~V~ 107 (108)
T 3cx2_A 72 FELHITDAQPAFTGSYRCEVSTKDK-FDCSNFNLTVH 107 (108)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSSC-EEEEEEEEEEE
T ss_pred EEEEEecCCCccCEEEEEEEecCCC-ceEEEEEEEEe
Confidence 6899999999999999999997654 45677777774
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=98.93 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=67.4
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCc-eeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQ-HYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ..... ...........|.+.+++.+|+|
T Consensus 7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~D~G 85 (117)
T 2v9t_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM-LLPSGSLFFLRIVHGRKSRPDEG 85 (117)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEE-ECTTSCEEESSCCCBTTBCSSCE
T ss_pred cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeE-EecCCcEEEEEEEeCCCCcCcCE
Confidence 45777777777788899999999999999999999999999873221110 00000 00011111112233366899999
Q ss_pred EEEEEEEcCCCceee-EEEEEEE
Q psy8823 302 SYICRAANKLGTSEK-TVELFES 323 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~-~~~l~v~ 323 (386)
.|+|.|.|..|...+ .+.|.+.
T Consensus 86 ~Y~C~a~N~~G~~~s~~~~l~~~ 108 (117)
T 2v9t_A 86 VYVCVARNYLGEAVSHDASLEVA 108 (117)
T ss_dssp EEEEEEEETTEEEECCCEEEEEC
T ss_pred EEEEEEEeCccceEeeeEEEEhh
Confidence 999999999998865 4555553
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=93.17 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=71.0
Q ss_pred EEecceEeeCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCCeeeeeecCceeEEeeeeec---CceeeeEEEEeecc
Q psy8823 222 VEFAPVITVPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKEDTQQVLTNNQHYSISHFATA---DEFTDTTIRVITIE 296 (386)
Q Consensus 222 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~ 296 (386)
...+|.+...+....+.+|+.++|.|.+.+.| .+.+.|++++.. +.............. .......|.|.++.
T Consensus 7 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 84 (112)
T 3so5_A 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEA--LQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84 (112)
T ss_dssp -CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEE--CTTCEEEEEEETTGGGSSCEEEEEEEEECSCC
T ss_pred CCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcc--cccccccceeeeeccCCCccccceEEEEeccc
Confidence 34567777777777889999999999999664 469999999987 433221111111100 11125789999999
Q ss_pred cCCCeEEEEEEEcCCCc-eeeEEEEEE
Q psy8823 297 KRQYGSYICRAANKLGT-SEKTVELFE 322 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~g~-~~~~~~l~v 322 (386)
.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 85 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 85 FTSEGXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence 99999999999999998 456777765
|
| >3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=102.76 Aligned_cols=147 Identities=14% Similarity=0.229 Sum_probs=93.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+...|....+.+|++|+|.|.+.+.....+.|||.........+............+|+....+.....++|.|.+++.+
T Consensus 3 VtQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~ 82 (200)
T 3rgv_A 3 VTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEI 82 (200)
T ss_dssp EECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCST
T ss_pred cEECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCc
Confidence 44456667799999999999998655567999996543322222222221122346788777666677889999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecC-----CeeecCCCceEEEeCCccEEEEEEeeeeCC-CeEEEEEcCeeeCCC
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRP-----PVISDNSTRSLVVSEGQPVQLECFAGGHPT-PRISWRRENNAILPT 179 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~ 179 (386)
|+|.|.|.+.............|.|... |.+... ......++|.|.+.+..+ ..+.|.++|..+...
T Consensus 83 DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~------~~~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~~ 155 (200)
T 3rgv_A 83 DSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQL------RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD 155 (200)
T ss_dssp TCEEEEEEEESSSCCCCCCCEEEEEECCCSSCCCEEEEE------EESSSSSCEEEEEESCCTTCCCCCCSSTTCEECC
T ss_pred cCCCEEEEeccCcccccCcCEEEEEeCCCCCCCCeEEEc------cCCCCCceEEEEcccccCCeEeEeccCCcEEeec
Confidence 9999999986321111122345666542 111110 112234789999977644 469999999876543
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-13 Score=91.67 Aligned_cols=80 Identities=14% Similarity=0.301 Sum_probs=64.0
Q ss_pred CCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 232 KPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
+....+.+|+.++|.|.+. +.|.+.+.|++++.. ....... ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus 17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~--~~~~~~~----------~~~~~L~i~~v~~~D~G~Y~C~a~n~ 84 (98)
T 1gl4_B 17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNG--KLPSRAM----------DFNGILTIRNVQPSDAGTYVCTGSNM 84 (98)
T ss_dssp CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGB--CCCTTEE----------EETTEEEECSCCGGGCEEEEEEEECS
T ss_pred CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCC--CCCceee----------cCCCEEEEeCCChhhCEEEEEEecCC
Confidence 3455788999999999998 688899999998644 2111111 13558999999999999999999999
Q ss_pred CCceeeEEEEEEE
Q psy8823 311 LGTSEKTVELFES 323 (386)
Q Consensus 311 ~g~~~~~~~l~v~ 323 (386)
.|....++.|.|.
T Consensus 85 ~g~~~~~~~l~V~ 97 (98)
T 1gl4_B 85 FAMDQGTATLHVQ 97 (98)
T ss_dssp SCEEEEEEEEEEC
T ss_pred CCccccEEEEEEe
Confidence 9999999888774
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-13 Score=95.66 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=73.5
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.+...|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+.. +.++.... ...+.+|.
T Consensus 10 ~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~--------------~~~~~~~~--~~~~~~L~ 73 (106)
T 1nct_A 10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST--------------SARHQVTT--TKYKSTFE 73 (106)
T ss_dssp CSSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTT--------------CSSEEEEE--CSSEEEEE
T ss_pred CCCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCC--------------CCCEEEEE--CCCEEEEE
Confidence 345678888889999999999999999999999999999998865421 12232222 12356899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
|.+++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 74 I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 105 (106)
T 1nct_A 74 ISSVQASDEGNYSVVVENSEGK-QEAEFTLTIQ 105 (106)
T ss_dssp ECCCCSSCCSEEEECCBCSSCB-CCEEEEEEEC
T ss_pred ECcCCchhCEEEEEEEEeCCCe-EEEEEEEEEE
Confidence 9999999999999999876554 4666777664
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-13 Score=95.82 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=67.6
Q ss_pred cccccCCCcEEEEEEEEecC--CCeeEEEeCCeeeee---ecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEE
Q psy8823 234 RLGQALQYDMDLECHVEAYP--PPAIVWIKEDTQQVL---TNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 308 (386)
...+.+|+.+.|.|.+.|.| .+.+.|++++..... ........ .........+.|.|.+++.+|+|.|+|.|.
T Consensus 17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 94 (122)
T 3s35_X 17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ--SGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 94 (122)
T ss_dssp CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEE--EETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccc--cCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence 34677899999999999954 468999998874110 00111000 000111246689999999999999999999
Q ss_pred cCCCceeeEEEEEEEecCCC
Q psy8823 309 NKLGTSEKTVELFESIIPVC 328 (386)
Q Consensus 309 n~~g~~~~~~~l~v~~~p~~ 328 (386)
|..|....++.|.|...|..
T Consensus 95 n~~g~~~~~~~l~V~~~p~i 114 (122)
T 3s35_X 95 SGLMTKKNSTFVRVHEKPFV 114 (122)
T ss_dssp CSSCEEEEEEEEEEEEEECC
T ss_pred cCCCceEEEEEEEEeccCeE
Confidence 99999999999999887764
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-13 Score=93.45 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=71.7
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeC---CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYA---QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (386)
.+.++.|...|.+..+.+|++++|.|.+.+. |.+.|+|||+...... ...+....... .+ .......+++
T Consensus 9 ~~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~----~~~~~~~~~~~-~~--~~~~~~~~~~ 81 (118)
T 2edn_A 9 EEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELG----SKSGARFSFKE-SH--NSASNVYTVE 81 (118)
T ss_dssp CCCSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCC----CSTTSSCEEEE-EE--CSSSCEEEEE
T ss_pred cCCcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccC----CCCccEEEecc-cc--ccccccceEE
Confidence 3445667777888889999999999999864 6789999996421100 00011111110 00 0011123569
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
|.|.+++.+|+|.|+|++.+..+ ..+..+.|.|..+
T Consensus 82 L~I~~v~~~D~G~Y~Cevsn~~g-~~s~~~~L~V~~~ 117 (118)
T 2edn_A 82 LHIGKVVLGDRGYYRLEVKAKDT-CDSCGFNIDVEAP 117 (118)
T ss_dssp EEESSCCTTTCSCEEEEEECSSC-EEEEEECCEEECC
T ss_pred EEEeeCChhhCEEEEEEEEEcCC-cEEEEEEEEEEcC
Confidence 99999999999999999998755 5688888888764
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-13 Score=93.59 Aligned_cols=95 Identities=21% Similarity=0.368 Sum_probs=71.9
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.+...+....+.+|++++|.|.+.+ +.+.+.|++++..+.. +.++....+ .....|.|
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~--------------~~~~~~~~~--~~~~~L~I 67 (103)
T 2edf_A 5 SSGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRK--------------SQKYDVVCE--GTMAMLVI 67 (103)
T ss_dssp CCCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCC--------------SSSEEEEEE--TTEEEEEE
T ss_pred CCCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccC--------------CCCEEEEEC--CCEEEEEE
Confidence 456788888888888999999999999986 6778999998865521 122332221 22458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCee
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 137 (386)
.+++.+|+|.|+|.+.| .+..+.|.|..+|..
T Consensus 68 ~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~~ 99 (103)
T 2edf_A 68 RGASLKDAGEYTCEVEA-----SKSTASLHVEEKASG 99 (103)
T ss_dssp SSCCTTTCSEEEEECSS-----CEEEEEEEECCCSSS
T ss_pred CCCCcccCEEEEEEEcc-----CCcEEEEEEeCCCCC
Confidence 99999999999999875 366778888877643
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=90.47 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=69.7
Q ss_pred cceEeeCCCc-ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPR-LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+.. ..+.+|+.+.|.|.+. .|.+.+.|++++.. +....++.+... .....|.|.++..+|+|.|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~--i~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y 78 (100)
T 2yuv_A 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQE--IRPSTKYIFEHK-----GCQRILFINNCQMTDDSEY 78 (100)
T ss_dssp SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCB--CCCBTTEEEEEE-----TTEEEEEEEEECTTTCCEE
T ss_pred CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEE--CCCCCCEEEEec-----CCEEEEEEcCCCcCcCEEE
Confidence 4555555554 5678999999999998 78889999999988 544445444321 1245799999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEEecCC
Q psy8823 304 ICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
+|.| |....++.|.|..+|.
T Consensus 79 ~C~a----g~~~~~~~l~V~~~P~ 98 (100)
T 2yuv_A 79 YVTA----GDEKCSTELFVRSGPS 98 (100)
T ss_dssp EEEE----TTEEEEEEEEECCSCC
T ss_pred EEEE----CCceEEEEEEEecCCC
Confidence 9999 7788888998876653
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-12 Score=89.68 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=69.3
Q ss_pred ccCCeeeeeccc-eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 22 QRTPTISYISQE-QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 22 ~~~p~i~~~~~~-~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..+|.|...+.+ ..+.+|++++|.|.+. .+.+.+.|++++..+.. +.++.+.. ......|.|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~--------------~~~~~~~~--~~~~~~L~I 67 (100)
T 2yuv_A 5 SSGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRP--------------STKYIFEH--KGCQRILFI 67 (100)
T ss_dssp SSSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCC--------------BTTEEEEE--ETTEEEEEE
T ss_pred CCCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCC--------------CCCEEEEe--cCCEEEEEE
Confidence 357888877776 5688999999999998 68889999998876521 22333322 123448999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+++.+|+|.|+|.+ +..+..+.|.|..+|.
T Consensus 68 ~~~~~~D~G~Y~C~a-----g~~~~~~~l~V~~~P~ 98 (100)
T 2yuv_A 68 NNCQMTDDSEYYVTA-----GDEKCSTELFVRSGPS 98 (100)
T ss_dssp EEECTTTCCEEEEEE-----TTEEEEEEEEECCSCC
T ss_pred cCCCcCcCEEEEEEE-----CCceEEEEEEEecCCC
Confidence 999999999999998 3345667888887763
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=91.33 Aligned_cols=85 Identities=12% Similarity=0.249 Sum_probs=61.0
Q ss_pred cceEeeCCCc--ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 225 APVITVPKPR--LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
||.+..+... ..+.+|+.+.|.|.+.+ |.+.+.|+++|.. +....++.+.... ....|.|.++..+|+|.
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~--i~~~~~~~i~~~~-----~~~~L~I~~v~~~D~G~ 75 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQE--VEESDFVVLENEG-----PHRRLVLPATQPSDGGE 75 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSC--CCCCSSCEEEEET-----TEEEEEESSCCGGGCSE
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEE--eeeeeeeeEEecC-----CeEEEEeCCCChhhcEE
Confidence 3344444333 34568999999999855 8889999999998 6555555543211 34579999999999999
Q ss_pred EEEEEEcCCCceeeEEEEE
Q psy8823 303 YICRAANKLGTSEKTVELF 321 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~ 321 (386)
|+|.|.|. +.++.|.
T Consensus 76 Y~C~a~n~----~~~~~lt 90 (91)
T 2lvc_A 76 FQCVAGDE----CAYFTVT 90 (91)
T ss_dssp EEEECSSC----EEEEEEE
T ss_pred EEEEEcce----EEEEEEE
Confidence 99999664 4455543
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-13 Score=93.99 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=67.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEecc--ceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS--RFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i 100 (386)
.++.|...+.+..+.+|++++|.|.+.+ +.+.+.|+|++..+.. +. ++.+..+ ....+|.|
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~--------------~~~~~~~~~~~--~~~~~L~I 68 (103)
T 1x44_A 6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIP--------------GPKSRYRIRVE--GKKHILII 68 (103)
T ss_dssp SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCC--------------STTCSEEEEEE--TTEEEEEE
T ss_pred CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCC--------------CCceEEEEEEc--CCEEEEEE
Confidence 3444777778888999999999999976 6688999998865421 11 2233221 23458999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+++.+|+|.|+|.+.| .+..+.|.|..+|.
T Consensus 69 ~~~~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 69 EGATKADAAEYSVMTTG-----GQSSAKLSVDLKSG 99 (103)
T ss_dssp EEECTTTCSEEEEEETT-----EEEEEEEEEECCCS
T ss_pred CCCCcccCEEEEEEECC-----CcEEEEEEEeCCCC
Confidence 99999999999999864 36667788877654
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=94.08 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=77.1
Q ss_pred eeeEEEEEEec-ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEe
Q psy8823 215 RRNIAVEVEFA-PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVI 293 (386)
Q Consensus 215 ~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 293 (386)
+..+.|.|... |.+...+....+.+|+.+.|.|.+.+. |.+.|++++.. +....++.+... .....|.|.
T Consensus 8 ~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~--l~~~~~~~~~~~-----~~~~~L~I~ 78 (113)
T 2edh_A 8 RTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHET--LRDGDRHSLRQD-----GARCELQIR 78 (113)
T ss_dssp CCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSB--CCCSSSEEEEEE-----TTEEEEEEC
T ss_pred cEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEE--CCCCCcEEEEEC-----CCEEEEEEC
Confidence 44556667644 467777777889999999999999664 68999999987 555555554321 124589999
Q ss_pred ecccCCCeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 294 TIEKRQYGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
++..+|+|.|+|.| |....++.|.|...|.
T Consensus 79 ~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p~ 108 (113)
T 2edh_A 79 GLVAEDAGEYLCMC----GKERTSAMLTVRAMPS 108 (113)
T ss_dssp SCCSTTCEEEEEEE----TTEEEEEEEEECCCCC
T ss_pred CCChhhCEEEEEEe----CCCCEEEEEEEeCCCC
Confidence 99999999999999 7788888998877664
|
| >1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-12 Score=97.53 Aligned_cols=160 Identities=16% Similarity=0.209 Sum_probs=104.1
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
..+.+.|+...|..|+++.|.|..+...+..+.|--.-. .. .. +...+...|.|.+++
T Consensus 3 f~v~v~P~~~~V~~G~S~~l~Cs~~c~~p~~~glet~l~------------~~-~~---------~~g~~w~~l~l~~vs 60 (192)
T 1zxq_A 3 FEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLN------------KI-LL---------DEQAQWKHYLVSNIS 60 (192)
T ss_dssp CCEEEESSEEEECTTEEEEEEEEESCSSCSEEEEECSSE------------EE-EE---------EEETTEEEEEEEEEC
T ss_pred cEEEEeCCCcEEeCCCcEEEEEECCCCCccccccccccC------------ce-EE---------cCCCCeEEEEEeccc
Confidence 356778888889999999999998643333344543110 00 00 112233479999998
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCeeecCCCceEEEeCCccEEEEEEeee-eCCCe--EEEEEcCeeeCCCC-
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGG-HPTPR--ISWRRENNAILPTG- 180 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~--v~W~~~~~~~~~~~- 180 (386)
|+|.|.|.+.-. +....+.+.|.|+.+|......+....+.+|+.++|.|.+.+ .|... +.|++++..+....
T Consensus 61 --~~g~~~C~~~c~-~~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f 137 (192)
T 1zxq_A 61 --HDTVLQCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETF 137 (192)
T ss_dssp --SCEEEEEEEEET-TEEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEEC
T ss_pred --cCCeeEEEEECC-CcceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeeccc
Confidence 789999998743 345578899999998865543322235789999999999964 55544 89999887763211
Q ss_pred ---ce--EEeeeEEEECCCCCCCCe-EEEEEEecCC
Q psy8823 181 ---GS--IYRGSILKIPQITKEDRG-TYYCVAENGV 210 (386)
Q Consensus 181 ---~~--~~~~~~l~i~~~~~~d~g-~y~C~~~~~~ 210 (386)
.. ......+.+. ++++|.| .|+|+|.-..
T Consensus 138 ~~~~~~~~~~tv~~~~~-~~r~D~g~~~sC~A~L~L 172 (192)
T 1zxq_A 138 GKAAPAPQEATATFNST-ADREDGHRNFSCLAVLDL 172 (192)
T ss_dssp CSSTTCTTCEEEEEEEE-CCGGGGGCEEEEEEEEEC
T ss_pred ccccCcCcceEEEEEEe-cchhhCCceEEEEEEecC
Confidence 00 1111233344 4555666 9999998765
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=90.65 Aligned_cols=80 Identities=24% Similarity=0.445 Sum_probs=66.7
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEE
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 220 (386)
.+....+.+|+.+.|.|.+.+.| +.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..+. ....+.|
T Consensus 15 ~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l 92 (95)
T 2ckn_A 15 EVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGS-DTTYFSV 92 (95)
T ss_dssp BBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEE-EEEEEEE
T ss_pred CcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCc-EEEEEEE
Confidence 35567899999999999999887 799999999888766555556788999999999999999999998886 5555665
Q ss_pred EE
Q psy8823 221 EV 222 (386)
Q Consensus 221 ~v 222 (386)
.|
T Consensus 93 ~V 94 (95)
T 2ckn_A 93 NV 94 (95)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-13 Score=94.76 Aligned_cols=93 Identities=9% Similarity=0.043 Sum_probs=71.0
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +....++.+... .....|.|.++..+|+|.|+
T Consensus 9 ~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~--i~~~~r~~~~~~-----~~~~~L~I~~v~~~D~G~Y~ 81 (104)
T 2eny_A 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKT--VGSSSRFQATRQ-----GRKYILVVREAAPSDAGEVV 81 (104)
T ss_dssp CCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSB--CSBCSSCEEEEE-----TTEEEEEECSCCTTTCSCEE
T ss_pred CEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEE--CCCCCCEEEEEc-----CCEEEEEECCCCHHHCEEEE
Confidence 345556667788999999999999888754 8999999988 555555544321 13458999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEecCCCC
Q psy8823 305 CRAANKLGTSEKTVELFESIIPVCP 329 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~~p~~~ 329 (386)
|.|. ....++.|.|..+|..+
T Consensus 82 C~a~----~~~~~a~L~V~~~p~~~ 102 (104)
T 2eny_A 82 FSVR----GLTSKASLIVRERSGPS 102 (104)
T ss_dssp EEET----TEEEEECEEEECCCSSC
T ss_pred EEEC----CeeEEEEEEEeCCCcCC
Confidence 9984 45678888888777544
|
| >2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=100.02 Aligned_cols=173 Identities=13% Similarity=0.166 Sum_probs=100.4
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+....+.+|++|+|.|.+.+.....+.|||.........+........ ...+|+....+....+++|.|.+++.+|+|.
T Consensus 6 p~~~~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~-~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~ 84 (200)
T 2nw2_A 6 PTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGL-EEKGRFSSFLSRSKGYSYLLLKELQMKDSAS 84 (200)
T ss_dssp CSEEEEETTCCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEE-EEETTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred CCeEEEccCCCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCc-ccCCceEEEecCCCCEEEEEECccCcccCCc
Confidence 566678999999999998765556799999765432222222222211 1267887766666778899999999999999
Q ss_pred EEEEeEEc--cc-ceeeeEEEEEEecCCeeecCCCceE-EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEee
Q psy8823 111 YRCQVIIG--IN-NKISAEVDLQVRRPPVISDNSTRSL-VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG 186 (386)
Q Consensus 111 Y~C~~~~~--~~-~~~~~~~~l~v~~~p~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 186 (386)
|.|.+.+. .. ........|.|...+.. ..+... .....+.++|.|.+.+..+. +.= .++. .........
T Consensus 85 Y~C~~~~~~~~~~~~fg~gt~L~V~~~~~~--~~P~V~~~~~~~~~~tl~Cl~~gf~P~-~~v-~~~~---~~~~~~t~~ 157 (200)
T 2nw2_A 85 YLCAVQASGGSYIPTFGRGTSLIVHPYIQN--PDPAVYQLRDSKSSDKSVCLFTDFDSQ-TNV-SQSK---DSDVYITDK 157 (200)
T ss_dssp EEEEEC---CCCCCEECCCEEEEEECCCSS--CCCEEEEEEECC--CCEEEEEESCCTT-CCC-CCCS---SSSEEECCC
T ss_pred EEEEEEcCCcceeeeeCCCEEEEEecCccc--CCCeEEEcCCCCCCceEEEEeecccCC-cEe-eccc---ccceEecCc
Confidence 99998641 11 11112345666532100 001100 01123378999999887554 320 1111 111111233
Q ss_pred eEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 187 SILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 187 ~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
..|.+......+.+.|.|...+...
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (200)
T 2nw2_A 158 CVLDMRSMDFKSNSAVAWSNKSDFA 182 (200)
T ss_dssp EEEEEGGGTEEEEEEEEEESSSSCC
T ss_pred hhhhhhhcccccccceeccCCCceE
Confidence 4566666676777888998876544
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.7e-13 Score=91.40 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=65.8
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
....+.+|+.+.|.|.+.+ .|.+.|++++.. +....++.. ....|.|.++..+|+|.|+|.|.|..|
T Consensus 9 ~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~--~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~a~n~~g 75 (95)
T 4hwu_A 9 EAYVVAPGESLELQCMLKD--AAVISWTKDGVH--LGPNNRTVL---------IGEYLQIKGATPRDSGLYACTAARTVD 75 (95)
T ss_dssp EEEEECTTSCEEEECCCCT--TCEEEEEETTEE--ECCCSSEEE---------ETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred CcEEECCCCEEEEEEEeCC--CCEEEEEECCEE--CCCCceEEE---------eCCEEEECcCCcccCEEEEEEEccCCC
Confidence 3455778999999999876 579999999987 544444433 245799999999999999999999999
Q ss_pred ceeeEEEEEEEecC
Q psy8823 313 TSEKTVELFESIIP 326 (386)
Q Consensus 313 ~~~~~~~l~v~~~p 326 (386)
....++.|.|...+
T Consensus 76 ~~~~~~~l~V~~~~ 89 (95)
T 4hwu_A 76 SETWIFMVNVTDAA 89 (95)
T ss_dssp EEEEEEEEEECCC-
T ss_pred cEEEEEEEEEeCCc
Confidence 99999999886544
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-13 Score=95.63 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=69.0
Q ss_pred cccCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 21 AQRTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 21 ~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
...+|.|...+.+..+.+|+.++|.|.+.+.+ +.+.|++++..+.... .. ..++.+.. ......|.|
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~-----~~-----~~~~~~~~--~~~~~~L~I 71 (101)
T 2edk_A 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTRED-----SF-----KARYRFKK--DGKRHILIF 71 (101)
T ss_dssp CCCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSC-----CS-----SCCCEEEE--CSSEEEEEC
T ss_pred ccCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCC-----Cc-----ceeEEEEE--CCCEEEEEE
Confidence 34567888888888899999999999999877 8899999987652110 00 00233322 233558999
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
.+++.+|+|.|+|.+.+ .+....|.|..+|
T Consensus 72 ~~~~~~D~G~Y~C~a~n-----~~~~~~l~V~~~P 101 (101)
T 2edk_A 72 SDVVQEDRGRYQVITNG-----GQCEAELIVEEKQ 101 (101)
T ss_dssp SSCCGGGCSBEEEECSS-----CEECCBEEEECCC
T ss_pred CCCChhhCEEEEEEEcC-----CcEEEEEEEeCCC
Confidence 99999999999999864 2445567766554
|
| >1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=91.61 Aligned_cols=104 Identities=20% Similarity=0.379 Sum_probs=71.5
Q ss_pred ccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 109 (386)
|....+.+|++|+|.|.+.... ...+.|++.........+....+.......+|+....+...+.++|.|.+++.+|+|
T Consensus 8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG 87 (113)
T 1zox_A 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAG 87 (113)
T ss_dssp CSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred CCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCE
Confidence 4556689999999999997543 345999997653211112222222122345677776656677889999999999999
Q ss_pred EEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 110 YYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 110 ~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
.|.|.+.+.. ......+.|.|...|
T Consensus 88 ~Y~C~v~~~~-~~~~~~v~L~V~~~p 112 (113)
T 1zox_A 88 IYWCGITKGG-LDPMFKVTVNIGPVP 112 (113)
T ss_dssp EEEEEECCSS-SCCEEEEEEEEECC-
T ss_pred EEEEeeEcCC-CCccEEEEEEEEcCC
Confidence 9999998653 445677888887654
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=91.64 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=63.9
Q ss_pred eCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE---------EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeE
Q psy8823 148 SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI---------YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNI 218 (386)
Q Consensus 148 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 218 (386)
..+..+.|.|.+.|.|.|.++|++++..+....... ...+.|.|.++..+|+|.|+|.+.|..|. ....+
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~ 92 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQI 92 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCc-EeEEE
Confidence 357889999999999999999999999887654321 12345999999999999999999999997 66777
Q ss_pred EEEEEecc
Q psy8823 219 AVEVEFAP 226 (386)
Q Consensus 219 ~l~v~~~p 226 (386)
.|.|..+|
T Consensus 93 ~l~V~~~P 100 (103)
T 1wwb_X 93 SAHFMGWP 100 (103)
T ss_dssp EECCSCCC
T ss_pred EEEECCCC
Confidence 77776655
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-13 Score=93.19 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=70.8
Q ss_pred ccccCCeeeeeccceeeecCCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 20 TAQRTPTISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 20 ~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
....++.|...+.+..+.+|++++|.|.+.+.+. +.+.|+|++..+.. +.++.+..+ ...++|
T Consensus 4 V~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~--------------~~r~~~~~~--~~~~~L 67 (104)
T 2eny_A 4 GSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGS--------------SSRFQATRQ--GRKYIL 67 (104)
T ss_dssp CCCCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSB--------------CSSCEEEEE--TTEEEE
T ss_pred cccCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCC--------------CCCEEEEEc--CCEEEE
Confidence 3445667877888889999999999999987664 47999999876521 223333222 234589
Q ss_pred EEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.|.+++.+|+|.|+|.+. .......|.|..+|.
T Consensus 68 ~I~~v~~~D~G~Y~C~a~-----~~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 68 VVREAAPSDAGEVVFSVR-----GLTSKASLIVRERSG 100 (104)
T ss_dssp EECSCCTTTCSCEEEEET-----TEEEEECEEEECCCS
T ss_pred EECCCCHHHCEEEEEEEC-----CeeEEEEEEEeCCCc
Confidence 999999999999999873 235677888887764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 386 | ||||
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 2e-14 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 3e-07 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 9e-14 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 7e-08 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 5e-13 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 1e-09 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 6e-13 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 1e-05 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 0.001 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 9e-13 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 5e-08 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 4e-05 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 1e-12 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 3e-07 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 2e-12 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 4e-07 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 0.003 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 3e-12 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 3e-05 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 1e-11 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 7e-05 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 1e-11 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 6e-05 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-10 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 3e-06 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 1e-10 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 4e-10 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 3e-05 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 4e-04 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 2e-09 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 4e-04 | |
| d2oz4a3 | 84 | b.1.1.4 (A:367-450) Intercellular adhesion molecul | 3e-09 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 3e-09 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 9e-06 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 4e-09 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 2e-07 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 5e-09 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-06 | |
| d2nxyb1 | 97 | b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho | 5e-09 | |
| d2fcba2 | 88 | b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C | 6e-09 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 1e-08 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-08 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 5e-06 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-08 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 7e-04 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-08 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 9e-05 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 3e-08 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 3e-08 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 3e-08 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 4e-08 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 5e-07 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 4e-08 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 3e-06 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 7e-04 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 4e-08 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 4e-05 | |
| d1ncna_ | 110 | b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human | 5e-08 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 5e-08 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 2e-05 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 1e-07 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 1e-05 | |
| d1hkfa_ | 108 | b.1.1.1 (A:) NK cell activating receptor NKP44 {Hu | 2e-07 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 2e-07 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 1e-06 | |
| d1fnla2 | 89 | b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C | 4e-07 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 5e-07 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 0.001 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 6e-07 | |
| d1smoa_ | 113 | b.1.1.1 (A:) TREM-1 (triggering receptor expressed | 9e-07 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 1e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 4e-06 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 2e-06 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 6e-05 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 5e-04 | |
| d1olza1 | 92 | b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain { | 2e-06 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 2e-06 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 3e-04 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 3e-06 | |
| d2g5ra1 | 121 | b.1.1.1 (A:24-144) N-terminal domain of sialic aci | 3e-06 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 3e-06 | |
| d1l6za1 | 107 | b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C | 5e-06 | |
| d1l6za2 | 96 | b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, | 5e-06 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 6e-06 | |
| d1dr9a1 | 105 | b.1.1.1 (A:1-105) CD80, N-terminal domain {Human ( | 7e-06 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 8e-06 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 0.002 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 1e-05 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 1e-05 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 1e-05 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 2e-05 | |
| d1epfa1 | 97 | b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC | 2e-05 | |
| d1qfoa_ | 118 | b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mo | 4e-05 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 4e-05 | |
| d1neua_ | 119 | b.1.1.1 (A:) Myelin membrane adhesion molecule P0 | 4e-05 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 5e-05 | |
| d1xeda_ | 116 | b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PI | 6e-05 | |
| d1fnla1 | 84 | b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3 | 1e-04 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 1e-04 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 0.003 | |
| d1f2qa1 | 82 | b.1.1.4 (A:4-85) IgE high affinity receptor alpha | 2e-04 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 3e-04 | |
| d1ccza1 | 93 | b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter | 0.002 | |
| d1vcaa2 | 90 | b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 | 5e-04 | |
| d1dqta_ | 117 | b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-term | 9e-04 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 0.001 | |
| d2aq2a1 | 110 | b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse ( | 0.001 | |
| d1j8hd1 | 115 | b.1.1.1 (D:1-117) T-cell antigen receptor {Human ( | 0.002 | |
| d1q0xl2 | 102 | b.1.1.2 (L:108-212) Immunoglobulin light chain lam | 0.002 | |
| d1gsma1 | 90 | b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m | 0.003 | |
| d2fcba1 | 85 | b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3 | 0.003 | |
| d1u3ha1 | 110 | b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse ( | 0.003 | |
| d1kcvl1 | 107 | b.1.1.1 (L:1-107) Immunoglobulin light chain kappa | 0.003 |
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 66.3 bits (161), Expect = 2e-14
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
P + +VV +GQ V + C G P P + W N L G + S L I
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKG 60
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ D+G Y C A N G V+V
Sbjct: 61 VKNGDKGYYGCRATNEHGD-KYFETLVQV 88
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 45.9 bits (108), Expect = 3e-07
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 13/97 (13%)
Query: 225 APVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
AP ++ Q D+ + C V P P +VW
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT--------- 52
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
D+ + + ++ G Y CRA N+ G +
Sbjct: 53 ---DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 64.5 bits (156), Expect = 9e-14
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
P I GQ V LECFA G+P P+I WR+ + + + +L I
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQN 61
Query: 194 ITKEDRGTYYCVAENGVGKGTRR 216
+ ED GTY C AEN G+ T +
Sbjct: 62 VDFEDEGTYECEAENIKGRDTYQ 84
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 47.5 bits (112), Expect = 7e-08
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 14/99 (14%)
Query: 223 EFAPVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281
++AP I P AL + LEC P P I W K D Q
Sbjct: 2 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP------ 55
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + ++ G+Y C A N G +
Sbjct: 56 -------LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 62.5 bits (151), Expect = 5e-13
Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GSILKIPQITKE 197
R V V+ C AGG+P P + W + L + +
Sbjct: 13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 72
Query: 198 DRGTYYCVAENGVGKGTRRNIAVEV 222
D+G Y CV EN G ++V
Sbjct: 73 DKGNYTCVVENEYGS-INHTYHLDV 96
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 52.9 bits (126), Expect = 1e-09
Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 225 APVITVPKPRLGQALQY-----DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279
AP T ++ + L + C P P + W+K + ++ ++
Sbjct: 1 APYWTNT-EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKV- 57
Query: 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
++ + ++ G+Y C N+ G+ T L
Sbjct: 58 ----RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 94
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.9 bits (149), Expect = 6e-13
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP------TGGSIYRGSILKIPQITK 196
L VS+GQPV+L C G P I W ++ + + L + + +
Sbjct: 4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63
Query: 197 EDRGTYYCVAENGVGKGTRRNIAVEVE 223
D G Y+C E+G + + + VE
Sbjct: 64 SDAGRYWCQVEDGGETEISQPVWLTVE 90
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 1e-05
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L C VE P I W+K+ + + +S + + ++E+ G Y
Sbjct: 16 LNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ-----HWIGFLSLKSVERSDAGRYW 70
Query: 305 CRAANKLGTSE 315
C+ + T
Sbjct: 71 CQVEDGGETEI 81
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.3 bits (80), Expect = 0.001
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G V+L CSV+ ++ + W+K + I L
Sbjct: 11 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD--------------QLYIPVSEQHWIGFL 56
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+K ++ +DAG Y CQV G +IS V L V
Sbjct: 57 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 62.3 bits (150), Expect = 9e-13
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 17/98 (17%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------ 185
R P++ + G V+ C P I W + G
Sbjct: 2 RHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 61
Query: 186 -----------GSILKIPQITKEDRGTYYCVAENGVGK 212
+L I +T ED G Y C+A N +G
Sbjct: 62 KAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI 99
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 48.4 bits (114), Expect = 5e-08
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 226 PVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDT---QQVLTNNQHYSISHFAT 281
P++ P + D++ C V + P I WIK + + Y A
Sbjct: 5 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64
Query: 282 ADEFTDTTIRVITIEKRQY---GSYICRAANKLGTSEKTVEL 320
TD I V+ I + G Y C A N +G S + L
Sbjct: 65 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 106
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 40.3 bits (93), Expect = 4e-05
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 4/100 (4%)
Query: 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDT 91
+GG VE C V ++ ++ ++ + A T
Sbjct: 13 ANASTVVGGDVEFVCKVY---SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTT 69
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
L ++++ DAG Y C I L V
Sbjct: 70 DKEIEVLYIRNVTFEDAGEYTCLAGNSI-GISFHSAWLTV 108
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.4 bits (148), Expect = 1e-12
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 134 PPVISD-NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY------RG 186
PP + S + + GQ V L C A G P P +SW ++ I
Sbjct: 3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
S L I + K D Y C+AEN G+ +I ++V
Sbjct: 63 SELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKV 97
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.4 bits (109), Expect = 3e-07
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 226 PVITVPKPRLGQALQ--YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
P + + + + L C + +P P + W K+
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS---- 59
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + ++K Y+C A NK G + ++ L
Sbjct: 60 -DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 95
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (146), Expect = 2e-12
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 5/88 (5%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIYRGSILKIPQITKED 198
V G+ V+L G +W + I + + GS L I +E
Sbjct: 8 EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEH 67
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAP 226
G Y + EN +G + + + V P
Sbjct: 68 CGCYTLLVENKLGS-RQAQVNLTVVDKP 94
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 4e-07
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
L V P W+K Q + ++H + + + + ++ + G Y
Sbjct: 20 LFGKVTGTQPITCTWMKFRKQ--IQESEHMKVEN-----SENGSKLTILAARQEHCGCYT 72
Query: 305 CRAANKLGTSEKTVELFESIIPVCPPQTQP 334
NKLG+ + V L P PP P
Sbjct: 73 LLVENKLGSRQAQVNLTVVDKPD-PPAGTP 101
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.8 bits (79), Expect = 0.003
Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 17/111 (15%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P I ++Q G +VEL V Q WMK I
Sbjct: 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK--------------FRKQIQESEH 46
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135
+ + L + ++ G Y V A+V+L V P
Sbjct: 47 MKVENSE--NGSKLTILAARQEHCGCYTLLV-ENKLGSRQAQVNLTVVDKP 94
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.0 bits (144), Expect = 3e-12
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIP 192
P +++ RS V G V C A P + W R +N LP+ + G L I
Sbjct: 1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI-LTIR 59
Query: 193 QITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+ D GTY C N + + V+
Sbjct: 60 NVQPSDAGTYVCTGSNMFAM-DQGTATLHVQ 89
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.3 bits (93), Expect = 3e-05
Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 226 PVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
++TV + R D+ C ++ P + L +
Sbjct: 2 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG------- 54
Query: 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + ++ G+Y+C +N + T L
Sbjct: 55 ----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 86
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 58.4 bits (140), Expect = 1e-11
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP------TGGSIYRGS 187
P +S + ++ G + C G +P ++ + + T + G
Sbjct: 6 PQYVSKD----MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 61
Query: 188 ILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
L ED G Y C +NGVGK + ++ + V
Sbjct: 62 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 39.1 bits (90), Expect = 7e-05
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 5/73 (6%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
+ C + P + K + + + + T G Y
Sbjct: 23 IYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNR-----TSGKRLLFKTTLPEDEGVYT 77
Query: 305 CRAANKLGTSEKT 317
C N +G +K
Sbjct: 78 CEVDNGVGKPQKH 90
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 58.0 bits (139), Expect = 1e-11
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
G ++ C A G P P + W R+ + G L+ ++ ED G Y
Sbjct: 9 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMY 68
Query: 203 YCVAENGVGKGTRRNIAVEVE 223
CVAEN G + + V+
Sbjct: 69 QCVAENKHGT-VYASAELTVQ 88
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.5 bits (91), Expect = 6e-05
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
C P PA+ W+++ N S R + G Y
Sbjct: 21 WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL-----------RFSKLVLEDSGMYQ 69
Query: 305 CRAANKLGTSEKTVEL 320
C A NK GT + EL
Sbjct: 70 CVAENKHGTVYASAEL 85
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 55.2 bits (132), Expect = 1e-10
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI----LKIPQITKED 198
RS+ V EG+ + C G P P ++W R+ + + + +I + D
Sbjct: 7 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 66
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVE 223
G Y V EN GK + ++
Sbjct: 67 EGNYSVVVENSEGK-QEAEFTLTIQ 90
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 42.9 bits (100), Expect = 3e-06
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
C + P P + W+++ + + + + + E + G+Y
Sbjct: 19 FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ-------ASDEGNYS 71
Query: 305 CRAANKLGTSEKTVEL 320
N G E L
Sbjct: 72 VVVENSEGKQEAEFTL 87
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 55.4 bits (132), Expect = 1e-10
Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG----SI 188
+ PV+ D ++ E P LEC G+ +++
Sbjct: 1 KYPVLKDQPA-EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 59
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
L + D G Y C AE G + R I+
Sbjct: 60 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.6 bits (130), Expect = 4e-10
Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRG------ 186
PP S S V+ G L C G P SW ++ ++L R
Sbjct: 2 PPSKPTISVPS-SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60
Query: 187 ------SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L +T D G YYC A+NG G R+ A ++
Sbjct: 61 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT-AMRSEAAHMD 102
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.8 bits (94), Expect = 3e-05
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 226 PVITVPKP-RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHY--SISHFATA 282
P I+VP +G L C PP+ +D +LT + + + +
Sbjct: 6 PTISVPSSVTIGNRAV----LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61
Query: 283 DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + G Y C+A N GT+ ++
Sbjct: 62 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 99
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.3 bits (85), Expect = 4e-04
Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 8/113 (7%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P+ IS IG L CS D + + +
Sbjct: 3 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT-------ADAKKTRAF 55
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQVRRPPV 136
+ + L+ + D+G Y CQ G S + V
Sbjct: 56 MNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 108
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.2 bits (124), Expect = 2e-09
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTG---GSIYRGSILKIPQITKEDR 199
EG+ + C P I W+ + ++ + + L+I I K D
Sbjct: 9 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE 68
Query: 200 GTYYCVAENGVGKGTR-RNIAVEV 222
GTY C ++I V V
Sbjct: 69 GTYRCEGRILARGEINFKDIQVIV 92
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.2 bits (85), Expect = 4e-04
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 242 DMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301
D + C V + PP I+W + +L + + + +++ I+K G
Sbjct: 18 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN--------NYLQIRGIKKTDEG 69
Query: 302 SYICRAANKLGTSEKTVEL 320
+Y C ++
Sbjct: 70 TYRCEGRILARGEINFKDI 88
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.5 bits (122), Expect = 3e-09
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
P + + + E C A G+P P + ++ LP G +
Sbjct: 3 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVT 53
Query: 194 ITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+T++ GTY C A + G+ R + V V
Sbjct: 54 VTRDLEGTYLCRARSTQGE-VTREVTVNVL 82
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.8 bits (123), Expect = 3e-09
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKED 198
V EGQ C P ++W +++ + + + R L I ++ +D
Sbjct: 9 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 68
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAP 226
+G Y A+N G + + V
Sbjct: 69 KGEYTVRAKNSYGT-KEEIVFLNVTRHS 95
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.8 bits (97), Expect = 9e-06
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
C V A PP + W K + + + D + + ++ G Y
Sbjct: 21 FYCRVIASSPPVVTWHK-------DDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 73
Query: 305 CRAANKLGTSEKTVELFESIIPVCPP 330
RA N GT E+ V L ++ P
Sbjct: 74 VRAKNSYGTKEEIVFL--NVTRHSEP 97
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.9 bits (123), Expect = 4e-09
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 143 RSLVVSEGQPVQLECF---AGGHPTPRISWRRENNAILPTG-----------GSIYRGSI 188
S+ + + C G P P + W + + T R
Sbjct: 5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
L++ Q T + G Y +A N G+ +I P P
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEFNP 106
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 2e-07
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
+ V+ P P++ W+ + T+ A + +R+ G+Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 305 CRAANKLGTSEKTVELFESIIPVCPPQTQP 334
AAN G + ++ P + P
Sbjct: 80 LLAANPFGQASASIMA---AFMDNPFEFNP 106
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 51.1 bits (121), Expect = 5e-09
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 134 PPVISDNSTRSLVV--SEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---RGSI 188
PV + +L S + V L C A +P W+ + S Y G +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220
+ + +D G+Y CVA N G R ++
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASL 95
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 43.7 bits (102), Expect = 2e-06
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 224 FAPVITVPKP----RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279
+ PV G A + + L C A PP W T+ + + Y +
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEE-KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 280 ATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313
+ ++ + GSY C A N GT
Sbjct: 62 --------DLVISNPVKAKDAGSYQCVATNARGT 87
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 5e-09
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD-TASSTYT 97
G TVEL C+ + W ++ K+ + R R +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
L++K+++ D+ Y C+V EV L V
Sbjct: 69 LIIKNLKIEDSDTYICEV-----EDQKEEVQLLV 97
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 50.7 bits (120), Expect = 6e-09
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
L EG+ + L C + P ++++ + + + IPQ G Y
Sbjct: 9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS----RSDPNFSIPQANHSHSGDY 64
Query: 203 YCVAENGVGKGTRRNIAVEV 222
+C G + + + + V
Sbjct: 65 HCTGNIGYTLYSSKPVTITV 84
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 1e-08
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 144 SLVVSEGQPVQLECFAGGH-PTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
+ VV EGQP+ L C + ++ + ++ A+ Y + I T ED GTY
Sbjct: 9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENHNISITNATVEDSGTY 64
Query: 203 YCVAENGVGKGTRRNIAVEVEFAP 226
YC + + + V AP
Sbjct: 65 YCTGKVWQLDYESEPLNITVIKAP 88
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 49.9 bits (118), Expect = 1e-08
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 7/95 (7%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG-----SIYRGSI 188
P I + +S V +G G P P W + I +
Sbjct: 4 APKIFERI-QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L I +T ED + A N G+ T + + V+
Sbjct: 63 LVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLVQ 96
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 42.5 bits (99), Expect = 5e-06
Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 6/96 (6%)
Query: 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
AP I D V P P W K S + E
Sbjct: 4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNG------VKIERSDRIYWYWPE 57
Query: 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ + + S + +A N G + L
Sbjct: 58 DNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 93
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 2e-08
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 38/126 (30%)
Query: 134 PPVI----SDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR---- 185
PP I ++VV G ++L+ G P P + W++
Sbjct: 4 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63
Query: 186 -----------------------------GSILKIPQITKEDRGTYYCVAENGVGKGTRR 216
SI + KED G Y +N VG+ +
Sbjct: 64 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQV 122
Query: 217 NIAVEV 222
N+ V+V
Sbjct: 123 NLTVKV 128
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 7e-04
Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 22/98 (22%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHY----------------------SISHFATA 282
L+ + P P ++W K TQ + +
Sbjct: 29 LDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE 88
Query: 283 DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+ V EK G Y N +G + + +
Sbjct: 89 TTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 126
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 49.5 bits (117), Expect = 2e-08
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-----GSI 188
P + + + V EG + +C G+P P + W +++N + +
Sbjct: 8 KPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 66
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L I ++ +D Y C A N +G+ + VE
Sbjct: 67 LTISEVCGDDDAKYTCKAVNSLGE-ATCTAELLVE 100
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 39.1 bits (90), Expect = 9e-05
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 221 EVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280
+ P T + +C VE YP P ++W K+D + +
Sbjct: 4 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY---- 59
Query: 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
DE + ++ + + Y C+A N LG + T EL
Sbjct: 60 --DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 97
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (115), Expect = 3e-08
Identities = 18/94 (19%), Positives = 22/94 (23%), Gaps = 3/94 (3%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSI-YRG 186
L RR P L G V L C + W A G
Sbjct: 1 LAPRRCPAQEVARG-VLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAV 220
L + + D G Y C + V
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDV 93
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 3e-08
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 18/108 (16%)
Query: 126 EVDLQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILPTGGSIY 184
+V L ++R + G P +LEC P ++W + N
Sbjct: 2 DVQLYIKRQ--------SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQ 53
Query: 185 R---------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
IL + D G+Y C A + + V
Sbjct: 54 TSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 3e-08
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 9/97 (9%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------- 185
R P +++ V+ GQ +C A G + + +
Sbjct: 1 RTPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF 58
Query: 186 GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ + TK D G Y C+ G G + V
Sbjct: 59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (115), Expect = 4e-08
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 222 VEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFAT 281
V FAP IT + + + V+ P PA+ W +L +++ T
Sbjct: 1 VHFAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYN--GAILNESKYICTKIHVT 55
Query: 282 ADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
+++ G Y A N+ G EK +
Sbjct: 56 NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 5e-07
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI---------LPTGG 181
V P I T + + G+P P + W + +
Sbjct: 1 VHFAPTI----TFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56
Query: 182 SIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVI 228
L++ T + G Y +A+N GK + I+ P I
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 4e-08
Identities = 21/102 (20%), Positives = 30/102 (29%), Gaps = 14/102 (13%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSI--------- 183
PP + G L C G P +W ++ + S
Sbjct: 2 PPSKPT-VNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60
Query: 184 --YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L ++ D G Y C A NG G + AV +E
Sbjct: 61 LNPTTGELVFDPLSASDTGEYSCEARNGYGT-PMTSNAVRME 101
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 3e-06
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 226 PVITVPK-PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
P + +P +G L C + PP+ +D + TN + ++
Sbjct: 6 PTVNIPSSATIGNRAV----LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61
Query: 285 FTDTTIRVIT-IEKRQYGSYICRAANKLGTSEKTVEL 320
T V + G Y C A N GT + +
Sbjct: 62 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 98
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 7e-04
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSR 84
P+ ++ IG L CS Q D +P + S+ +S
Sbjct: 3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKD----GIVMPTNPKSTRAFSNSS 58
Query: 85 FAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGI-NNKISAEVDLQV 131
+ + T + +D G Y C+ G S V ++
Sbjct: 59 YVLNPTTGELV----FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 4e-08
Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR------GSILKIPQITK 196
G+ V+LEC + W + I+P S YR IL I TK
Sbjct: 8 EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 66
Query: 197 EDRGTYYCVAENGVGKGT 214
D Y + G
Sbjct: 67 ADAAEYSVMTTGGQSSAK 84
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 4e-05
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 245 LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304
LEC V + + W K + + Y I E + + K Y
Sbjct: 20 LECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV-----EGKKHILIIEGATKADAAEYS 73
Query: 305 CRAANKLGTSEKTVEL 320
+++ +V+L
Sbjct: 74 VMTTGGQSSAKLSVDL 89
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 5e-08
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 38 IGGTVELKCSVQYAQDYPV---IWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASS 94
T +L C +Q+ + + D+ + S++ R S
Sbjct: 8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD 67
Query: 95 TYTLLVKDIQETDAGYYRCQVI----IGINNKISAEVDLQVR 132
++TL + ++Q D G Y+C + G+ +L V
Sbjct: 68 SWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 5e-08
Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 15/107 (14%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL----------- 177
L V PP+IS ST++ G+ Q++CF P P +L
Sbjct: 2 LTVNGPPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 59
Query: 178 PTGGSIYRGSILKIPQITKE-DRGTYYCVAENGVGKGTRRNIAVEVE 223
S L I I + + Y C A N G I ++ +
Sbjct: 60 TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQ 105
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-05
Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Query: 220 VEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHF 279
+ V P+I+ + + + ++C + + PPP + + +
Sbjct: 2 LTVNGPPIISSTQTQHALHGE-KGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60
Query: 280 ATADEFTDTTIRVITIEKRQYGS-YICRAANKLGTSEKTVELFESIIPVCPPQT 332
+ +E +T+ + I + + + Y C A N G+ + + L E + P +
Sbjct: 61 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 114
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 1e-07
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 17/98 (17%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI----------- 183
PVI + ++ V G +QL C G + W+ + I +
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61
Query: 184 -----YRGSILKIPQITKEDRGTYY-CVAENGVGKGTR 215
++L I +I + C A+N G
Sbjct: 62 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 99
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 1e-05
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 10/109 (9%)
Query: 226 PVITVPKPRLGQALQ-YDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
PVI P + + L C+V W + + +
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61
Query: 285 FTDTTIRVITIEKRQY------GSYICRAANKLGTSEKTVELFESIIPV 327
+ + + + + C A N G ++L I PV
Sbjct: 62 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL---IYPV 107
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 2e-07
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 31 SQEQI--KDIGGTVELKC--SVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFA 86
S+ Q+ G T+ ++C + W K V L S+ + SRF
Sbjct: 1 SKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFT 60
Query: 87 IRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
I D + +T+ + D++E D+G+Y C++ +N +S V +
Sbjct: 61 IWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYL 105
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 2e-07
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 1/96 (1%)
Query: 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEF 285
P + K L C E+ PP + T + S S F +
Sbjct: 3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62
Query: 286 TDTTIRVITIEKRQY-GSYICRAANKLGTSEKTVEL 320
+ + + + G Y C + G+ + + L
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 98
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-06
Identities = 16/93 (17%), Positives = 24/93 (25%), Gaps = 13/93 (13%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR-------- 185
PP + S ++EG+ L C + P +
Sbjct: 2 PPRVKA-VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60
Query: 186 ---GSILKIPQITKEDR-GTYYCVAENGVGKGT 214
S L I + E G Y C + G
Sbjct: 61 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ 93
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 45.7 bits (107), Expect = 4e-07
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
V E P+ L C + ++++ + + IP+ T +D G+Y
Sbjct: 11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDF----HIPKATLKDSGSY 66
Query: 203 YCVAENGVGKGTRRNIAVEVEFA 225
+C G + + + + A
Sbjct: 67 FCRGLVGSKNVSSETVNITITQA 89
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.5 bits (106), Expect = 5e-07
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWR------------RENNAILPTG 180
+ V + S + V E + ++L C G +PR+ W+
Sbjct: 1 KGSVYTAQS--DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 181 GSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+ S + +T++D G Y C+ G+ +++ +
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQ-NYGEVSIHLT 100
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.8 bits (81), Expect = 0.001
Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWI-KEDTQQVLTNNQHYSISHFATADE 284
+ + + + L C + P + W + + L + +A
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
F+ + I ++ ++ G Y C + + G + V +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI 97
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 6e-07
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 132 RRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY-----RG 186
++ + VS+G ++L + W + I +G
Sbjct: 3 KKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAK 61
Query: 187 SILKIPQITKEDRGTYYCVAEN 208
L I Q + D Y CV
Sbjct: 62 RTLTISQCSLADDAAYQCVVGG 83
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 9e-07
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 10/109 (9%)
Query: 21 AQRTPTISYISQEQIKDIGGTVELKC--SVQYAQDYPVIWMKVDRNKVTEPLPISTGSSL 78
A + Y +E G T+++KC +++ W + ++ + L + S
Sbjct: 1 ATKLTEEKYELKE-----GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSK 55
Query: 79 ---IIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKIS 124
++ R + + + ++Q D+G Y+C +
Sbjct: 56 NSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHM 104
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 1e-06
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 147 VSEGQPVQLEC------FAGGHPTPRISWRRENNAILPTGG-SIYRGSILKIPQITKEDR 199
+ L C + P++ W ++ +L L + + ++ R
Sbjct: 11 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHR 70
Query: 200 GTYYCVAENGVGKGTRRNIAVEVEFAPVITVPKP 233
G Y C A G + I +EF + KP
Sbjct: 71 GNYTCHASYTYL-GKQYPITRVIEFI-TLEENKP 102
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 1e-06
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 222 VEFAPVIT-VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA 280
V + P + + +P L + +E V PPP + W+ + H
Sbjct: 2 VYYPPRVVSLEEPELRL----EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE- 56
Query: 281 TADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
E ++ + G+Y A N LGT+ +T+
Sbjct: 57 --GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 94
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 4e-06
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 19/107 (17%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECF---AGGHPTPRISWRRENNAILPT-------- 179
V PP + + + E + C G+P P + W + +
Sbjct: 2 VYYPPRV-------VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 54
Query: 180 GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
L + T + G Y +A+N +G + I P
Sbjct: 55 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP 100
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.6 bits (104), Expect = 2e-06
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLII-------RDSRFAIRYD 90
+G EL C + ++ + + R+ + + + R ++
Sbjct: 16 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES 75
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137
L +++++ +D G Y C + + A V+L+V P
Sbjct: 76 IGEGKVALRIQNVRFSDEGGYTCFFRDH-SYQEEAAVELKVEDPFYW 121
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.0 bits (92), Expect = 6e-05
Identities = 14/117 (11%), Positives = 25/117 (21%), Gaps = 28/117 (23%)
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI------------- 188
+ G +L C + +YR
Sbjct: 9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGR 68
Query: 189 --------------LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
L+I + D G Y C + + + ++VE P
Sbjct: 69 TELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYWINP 124
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.3 bits (85), Expect = 5e-04
Identities = 13/122 (10%), Positives = 29/122 (23%), Gaps = 18/122 (14%)
Query: 228 ITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYS------------ 275
+ P + + + +L C + + + Y
Sbjct: 5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 64
Query: 276 ----ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELF--ESIIPVCP 329
+ +R+ + G Y C + E VEL + + P
Sbjct: 65 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINP 124
Query: 330 PQ 331
+
Sbjct: 125 GR 126
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 2e-06
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSI-LKIPQITKEDR 199
S R G +L+C + + + G L I +++ D
Sbjct: 3 SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDS 62
Query: 200 GTYYCVAENGVG-KGTRRNIAVEV 222
G Y C++E V K + +A V
Sbjct: 63 GVYQCLSEERVKNKTVFQVVAKHV 86
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (101), Expect = 2e-06
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGS----I 188
+P +++ ++R + + G LE G P P +W ++ +
Sbjct: 2 KPKILT--ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
+ P + D G Y +N +G+ V V+
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.7 bits (86), Expect = 3e-04
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADE 284
P I ++ + +LE P P W D+ L
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSS----- 56
Query: 285 FTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVEL 320
T+I + ++ G+Y + N+LG E E+
Sbjct: 57 --TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 3e-06
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 145 LVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYR----GSILKIPQITKEDR 199
LV S + C I+W ++++ + R L ED
Sbjct: 12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 71
Query: 200 GTYYCVAENGVGKGTRRNIAVEV 222
G YYCV N R I+ +
Sbjct: 72 GHYYCVVRNSSYC-LRIKISAKF 93
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 3e-06
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 39 GGTVELKCSVQYAQDYP-------VIWMKVDRNKVTEPLPISTGSSLIIRDS---RFAIR 88
G V ++CS Y D W + + + + + +++ RF +
Sbjct: 16 GMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLL 75
Query: 89 YDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
D + TL ++D + +DAG Y ++ G L V
Sbjct: 76 GDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSV 118
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 43.1 bits (100), Expect = 3e-06
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 144 SLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGS----IYRGSILKIPQITKED 198
+ ++EG V C +P W L I + D
Sbjct: 13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASD 72
Query: 199 RGTYYCVAENGVGKGTRRNIAVEVEFAPVITVP 231
G Y C A + + T+ +V +F+ +
Sbjct: 73 LGNYSCFATSHIDFITK---SVFSKFSQLSLAA 102
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.8 bits (100), Expect = 5e-06
Identities = 15/93 (16%), Positives = 27/93 (29%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
V L W K + + + + +S + + + S +L
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 99 LVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
L + I D G Y + + A V V
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (98), Expect = 5e-06
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRG-SIL 189
V +P + N+T V E V L C + + L ++ + SIL
Sbjct: 3 VTQPFLQVTNTT----VKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSIL 58
Query: 190 KIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAP 226
+I I +ED G Y C N V +I +++ F P
Sbjct: 59 RIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 6e-06
Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 9/87 (10%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGG---HPTPRISWRRENNAILPTGGSIYRG---- 186
PP + + +V+ G+ +EC + + R N +
Sbjct: 1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60
Query: 187 --SILKIPQITKEDRGTYYCVAENGVG 211
+ ++ + C+A +
Sbjct: 61 ATATFNSTADREDGHRNFSCLAVLDLM 87
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 7e-06
Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 36 KDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASST 95
K++ L C + + ++ K + + + I ++
Sbjct: 6 KEVKEVATLSCGHNVSVEEL-AQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 96 YTLLVKDIQETDAGYYRCQVII----GINNKISAEVDLQVR 132
++++ ++ +D G Y C V+ + AEV L V+
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVK 105
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.0 bits (98), Expect = 8e-06
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 38 IGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYT 97
+G + L Q I T ++ F I +
Sbjct: 9 LGHGINLNIP--NFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI-----LANGD 61
Query: 98 LLVKDIQETDAGYYRCQVII-GINNKISAEVDLQV 131
L +K++ D+G Y V ++ +DL++
Sbjct: 62 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 96
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.1 bits (80), Expect = 0.002
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 13/86 (15%)
Query: 142 TRSLVVSEGQPVQLEC--FAGGHPTPRISWRRENNAIL---PTGGSIYRGSI-------- 188
+ ++ + G + L F + W R + + +
Sbjct: 2 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 61
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGT 214
LKI +T++D GTY + G
Sbjct: 62 LKIKNLTRDDSGTYNVTVYSTNGTRI 87
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 41.3 bits (96), Expect = 1e-05
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 12/90 (13%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGG----SIY 184
++V +P + V G+ E P W+ + + +
Sbjct: 2 IEVEKPL-------YGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDG 53
Query: 185 RGSILKIPQITKEDRGTYYCVAENGVGKGT 214
+ IL + G A N
Sbjct: 54 KKHILILHNCQLGMTGEVSFQAANAKSAAN 83
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-05
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 17/103 (16%)
Query: 143 RSLVVSEGQPVQLECFAGGHP---TPRISWRRENNAILPTGGSIY-------------RG 186
+ V G+ + P I W + L + +
Sbjct: 8 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 67
Query: 187 SILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229
++I + G Y C + +EV + T
Sbjct: 68 FEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTT 109
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-05
Identities = 14/106 (13%), Positives = 23/106 (21%), Gaps = 17/106 (16%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHP---TPRISWRRENNAILPTGGSIYR----- 185
P + + V+ G + G P + W + L + +
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 186 --------GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVE 223
L I G Y C N + V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKF-DCSNFNLTVH 107
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 2e-05
Identities = 8/82 (9%), Positives = 17/82 (20%), Gaps = 5/82 (6%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGG---HPTPRISWRRENNAILPTGGSIYRG-SIL 189
P + + G+ + L C G + R +
Sbjct: 4 PERVE-LAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTT 62
Query: 190 KIPQITKEDRGTYYCVAENGVG 211
+ + C E +
Sbjct: 63 TVLVRRDHHGAQFSCRTELDLR 84
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.8 bits (94), Expect = 2e-05
Identities = 23/102 (22%), Positives = 30/102 (29%), Gaps = 15/102 (14%)
Query: 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGGSIYR-- 185
LQV P +S G+ C G ISW N L
Sbjct: 1 LQVDIVP-------SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV 53
Query: 186 -----GSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
S L I +D G Y CV G + + V++
Sbjct: 54 WNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.6 bits (94), Expect = 4e-05
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 39 GGTVELKCSVQYAQD-------YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDT 91
G + + C Y D + + + R + +
Sbjct: 15 GSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNM 74
Query: 92 ASSTYTLLVKDIQETDAGYYRCQVIIGINNK 122
LL+KD++ D+G Y + I +N+
Sbjct: 75 DHKVCNLLLKDLKPEDSGTYNFRFEISDSNR 105
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 4e-05
Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 6/81 (7%)
Query: 143 RSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGT 201
+ L V P QL C G I W R I S ++
Sbjct: 9 KDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVT-----GVTQSTM 63
Query: 202 YYCVAENGVGKGTRRNIAVEV 222
+ C A N G + R V +
Sbjct: 64 FSCEAHNLKGLASSRTATVHL 84
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.3 bits (93), Expect = 4e-05
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 13/106 (12%)
Query: 38 IGGTVELKCSVQY----AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRD------SRFAI 87
+G V L CS + D W D R
Sbjct: 13 VGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQW 72
Query: 88 RYDTASSTYTLLVKDIQETDAGYYRCQVII--GINNKISAEVDLQV 131
D + ++++ ++ +D G + C V I K +++V L V
Sbjct: 73 VGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGK-TSQVTLYV 117
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 5e-05
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL------------PTGGSIYRGSI 188
S + + E PV+L C G +PR+ W+ + + +
Sbjct: 10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTG 69
Query: 189 LKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEV 222
+ +T+ED GTY C+ G + + V++
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGN-SYGEVKVKL 102
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 6e-05
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVT---EPLPISTGSSLIIRDSRFAIRYDTASST 95
G +V + C R L S G R + + T
Sbjct: 14 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 73
Query: 96 YTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ + + + + D+G Y+C + I + +S +V L+V
Sbjct: 74 FVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEV 108
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Score = 38.4 bits (88), Expect = 1e-04
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQ 193
V+ + V E V L+C P + N +++ + S Y I
Sbjct: 5 KAVVFL-EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYF-----IDA 58
Query: 194 ITKEDRGTYYCVAENGVG 211
T D G Y C
Sbjct: 59 ATVNDSGEYRCQTNLSTL 76
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 38.9 bits (89), Expect = 1e-04
Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILPTGGS--------- 182
P + T EG+P QL+C P I+W++ + P
Sbjct: 4 ASPAKTHEKT----PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA 59
Query: 183 --IYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFAPVIT 229
+ + D Y C A+N + E++
Sbjct: 60 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDN 108
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 35.0 bits (79), Expect = 0.003
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 225 APVITVPK-PRLGQALQYDMDLECHVEAYP-PPAIVWIKEDTQQVLTNNQHYSISHFATA 282
+P T K P G+ Q L+C + P I W K + +
Sbjct: 5 SPAKTHEKTPIEGRPFQ----LDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG 60
Query: 283 DEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
+ V + Y+C A N E +
Sbjct: 61 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 96
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 2e-04
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQI 194
P +S + + +G+ V L C + N ++ S L I
Sbjct: 2 PKVS-LNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-----ETNSSLNIVNA 55
Query: 195 TKEDRGTYYCVAENGVG 211
ED G Y C +
Sbjct: 56 KFEDSGEYKCQHQQVNE 72
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 3e-04
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYD 90
SQ+ + G V + K ++KV E S F R
Sbjct: 2 SQQIYGVVYGNVTFHVPSN--VPLKEVLWKKQKDKVAELENSE-----FRAFSSFKNRVY 54
Query: 91 TASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQV 131
+ + +L + ++ +D Y + N + + L V
Sbjct: 55 LDTVSGSLTIYNLTSSDEDEYEMES---PNITDTMKFFLYV 92
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.9 bits (79), Expect = 0.002
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 15/84 (17%)
Query: 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYR--------------GS 187
++ + V + P + W+++ + + S +R
Sbjct: 2 SQQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 188 ILKIPQITKEDRGTYYCVAENGVG 211
L I +T D Y + N
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITD 84
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 5e-04
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 144 SLVVSEGQPVQLECFAGGHPTPRIS-WRRENNAILPTGGSIYRGSILKIPQITKEDRGTY 202
+ G V L C G +P S + ++ + + S L + ++ + +Y
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSY 69
Query: 203 YCVAENGVGKGTRRNIAVEV 222
C A K + I VE+
Sbjct: 70 LCTATCESRK-LEKGIQVEI 88
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 117 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.6 bits (84), Expect = 9e-04
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 4/81 (4%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP----ISTGSSLIIRDSRFAIRYDTASS 94
G C + + + + V R + T + + S
Sbjct: 14 HGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNES 73
Query: 95 TYTLLVKDIQETDAGYYRCQV 115
L ++ ++ D G Y C+V
Sbjct: 74 RVNLTIQGLRAVDTGLYLCKV 94
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (81), Expect = 0.001
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILP--TGGSIYRGSILKI 191
P + + V G V L C G + W L +
Sbjct: 2 VPTLK-VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 60
Query: 192 PQITKEDRGTYY-CVAENGVGKGTRRNIAVEV 222
+T + C AEN VG+ ++ V V
Sbjct: 61 ANVTSDLNRKNVTCWAENDVGR-AEVSVQVNV 91
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Score = 35.7 bits (82), Expect = 0.001
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 27/101 (26%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI------------------LPTGGS 182
S R+ V G+ V L C + + W R++ +P G
Sbjct: 7 SPRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYE 65
Query: 183 IYRGS----ILKIPQITKEDRGTYYCVAENGV----GKGTR 215
R S L + T Y+C + G G GTR
Sbjct: 66 ASRPSQEQFSLILESATPSQTSVYFCASGGGGTLYFGAGTR 106
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.002
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYT 97
G V L+C+ + + W N+ + L ++ ++L+ + F + + +++
Sbjct: 15 GALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFH 74
Query: 98 LLVKDIQETDAGYYRCQV 115
L +DA Y C V
Sbjct: 75 LTKPSAHMSDAAEYFCAV 92
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (81), Expect = 0.002
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 225 APVITVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATAD 283
+P +T+ P + L C + YP V K D V + S +
Sbjct: 5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNK 64
Query: 284 EFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTV 318
+ + + ++ SY C+ ++ +S KT+
Sbjct: 65 YMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 99
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.7 bits (78), Expect = 0.003
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 134 PPVISDNSTRSLVVSEGQPVQLEC-FAGGHPTPRISWRRENNAILPTGGSIYRGSILKIP 192
P+ + + V+ G QL C A + WR + ++ R S+L +
Sbjct: 2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGR-SVLTVR 60
Query: 193 QITKEDRGTYYCVAENGVGKGTRR 216
+ GT CV G
Sbjct: 61 NASLSAAGTRVCVGSCGGRTFQHT 84
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Score = 34.6 bits (78), Expect = 0.003
Identities = 11/77 (14%), Positives = 17/77 (22%), Gaps = 6/77 (7%)
Query: 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQI 194
V+ + + V + V L C P N + +
Sbjct: 5 AVLK-LEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNL-----IPTHTQPSYRFKA 58
Query: 195 TKEDRGTYYCVAENGVG 211
D G Y C
Sbjct: 59 NNNDSGEYTCQTGQTSL 75
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Score = 35.2 bits (80), Expect = 0.003
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98
G T L CS + + W + + L S D RF I ++ +L
Sbjct: 14 GETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSL 73
Query: 99 LVKDIQETDAGYYRCQV 115
+ D Q D+ Y C
Sbjct: 74 HIADSQPGDSATYFCAA 90
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Score = 34.7 bits (79), Expect = 0.003
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPT------------------GGS 182
S +S+ +S G+ V L C A + +SW ++ P G
Sbjct: 7 SPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG 66
Query: 183 IYRGSILKIPQITKEDRGTYYCVAENGV----GKGTR 215
L I + +D YYC G GT+
Sbjct: 67 SATDFTLTISSVQADDDADYYCGQSYSSPLTFGGGTK 103
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 386 | |||
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.75 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.72 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.7 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.69 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.69 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.68 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.68 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.67 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.66 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.65 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.64 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.63 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.62 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.61 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.61 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.6 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.59 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.59 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.59 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.58 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.58 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.58 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.58 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.58 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.58 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.58 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.58 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.58 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.57 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.57 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.57 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.57 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.57 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.57 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.56 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.56 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.56 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.56 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.55 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.55 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.54 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.53 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.52 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.52 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.52 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.51 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.51 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.51 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.51 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.5 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.5 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.5 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.5 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.5 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.5 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.5 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.5 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.49 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.49 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.48 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.48 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.48 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.48 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.47 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.47 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.47 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.47 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.47 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.46 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.46 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.45 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.45 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.45 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.45 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.44 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.44 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.44 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.43 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.42 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.42 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.41 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.39 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.39 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.39 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.39 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.38 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.38 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.38 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.37 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.37 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.37 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.37 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.34 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.34 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 99.34 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.34 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.33 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.33 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.33 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 99.31 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.3 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.29 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.29 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.28 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.28 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.28 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.27 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 99.27 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.26 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.25 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.24 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.22 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 99.22 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.21 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 99.21 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.2 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.2 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 99.19 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 99.17 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 99.17 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.16 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 99.14 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 99.14 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 99.13 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 99.11 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 99.11 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 99.11 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 99.1 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.1 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 99.09 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 99.09 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 99.08 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 99.08 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 99.08 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 99.08 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.08 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 99.06 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 99.06 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 99.06 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 99.05 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 99.04 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 99.04 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 99.03 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 99.03 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 99.03 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 99.01 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 99.0 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 99.0 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.99 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.99 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.98 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 98.98 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.97 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.97 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.96 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.96 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.96 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.96 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.95 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.95 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 98.94 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.94 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.94 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.94 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.93 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.93 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.93 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.92 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.92 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 98.91 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.91 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.91 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.9 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.89 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.89 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.89 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.88 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.87 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.86 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.85 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.84 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.83 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.82 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.82 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.81 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.8 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.8 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.8 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.77 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 98.77 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.75 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 98.75 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.73 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.72 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.72 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.7 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.69 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 98.68 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.68 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.68 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.67 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.66 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.66 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.66 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.66 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 98.66 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.65 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.65 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.65 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 98.65 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.65 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.65 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.64 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.64 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.64 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 98.64 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.64 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.64 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.63 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.62 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 98.62 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.62 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.62 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.61 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.61 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 98.6 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.59 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.59 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.59 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.59 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.58 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.58 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.58 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.57 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.57 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.57 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 98.57 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.56 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.56 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.56 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.55 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.55 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.55 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.55 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.55 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 98.55 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 98.54 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 98.53 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 98.53 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 98.53 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.52 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.52 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.52 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.52 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.52 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.52 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.52 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 98.52 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.51 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 98.51 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 98.51 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 98.5 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.5 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 98.5 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 98.5 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.5 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.5 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.5 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.49 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.49 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 98.48 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.47 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 98.47 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 98.47 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 98.47 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.46 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 98.46 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 98.46 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 98.45 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.45 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.45 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.44 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.43 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.42 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.41 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 98.41 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 98.4 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 98.38 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.38 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.38 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.37 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 98.36 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.36 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 98.36 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 98.35 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.35 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.35 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 98.35 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 98.35 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 98.35 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 98.34 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 98.34 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.33 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.33 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.33 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.33 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 98.32 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 98.32 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.31 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 98.31 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.31 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.31 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.31 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.31 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.28 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.28 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.28 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 98.26 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.26 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.25 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.25 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 98.25 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.25 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 98.23 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.23 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 98.22 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 98.22 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.2 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 98.2 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 98.2 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.19 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.19 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.19 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 98.17 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.17 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.17 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.16 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.15 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.14 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.13 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.12 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 98.12 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.12 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.11 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 98.1 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 98.1 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.1 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 98.1 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.1 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.09 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 98.09 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.09 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.08 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 98.08 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 98.07 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 98.06 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.05 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.04 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 98.04 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.03 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.03 | |
| d1l6xa1 | 105 | Immunoglobulin heavy chain gamma constant domain 2 | 98.02 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.0 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.0 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.0 | |
| d1igtb3 | 119 | Immunoglobulin heavy chain gamma constant domain 2 | 97.99 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 97.99 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.99 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 97.98 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.97 | |
| d1fp5a1 | 103 | Immunoglobulin heavy chain epsilon constant domain | 97.97 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.96 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 97.94 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.93 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.93 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 97.93 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.92 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.91 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 97.9 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 97.9 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.89 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.89 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 97.89 | |
| d1i1ca1 | 103 | Immunoglobulin heavy chain gamma constant domain 2 | 97.89 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 97.88 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.88 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 97.86 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.86 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.86 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.85 | |
| d1u58a1 | 98 | Immunomodulatory protein m144, alpha-3 domain {Mur | 97.85 | |
| d1c5ch2 | 103 | Immunoglobulin heavy chain gamma constant domain 1 | 97.83 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.82 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 97.81 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 97.81 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 97.8 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.8 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.79 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 97.79 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.79 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.79 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.79 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.77 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.76 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.76 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.74 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.74 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.74 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.73 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.73 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 97.72 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.72 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.72 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.69 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 97.69 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 97.69 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.69 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 97.68 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.67 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.67 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.66 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.64 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.61 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.6 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.6 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 97.59 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.56 | |
| d1pfca_ | 111 | Immunoglobulin heavy chain gamma constant domain 3 | 97.55 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.53 | |
| d2fbjh2 | 102 | Immunoglobulin heavy chain alpha constant domain 1 | 97.53 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.52 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 97.5 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.5 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.49 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 97.47 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.45 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 97.44 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 97.43 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.43 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 97.43 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 97.42 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 97.41 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 97.4 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 97.38 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 97.36 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 97.36 | |
| d2fbjh2 | 102 | Immunoglobulin heavy chain alpha constant domain 1 | 97.34 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.28 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 97.27 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.24 | |
| d1ow0a1 | 101 | Immunoglobulin heavy chain alpha constant domain 2 | 97.2 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.2 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.2 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.19 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.19 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.18 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.18 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.16 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.15 | |
| d1xiwa_ | 91 | CD3 epsilon chain ectodomain fragment {Human (Homo | 97.15 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.14 | |
| d1u58a1 | 98 | Immunomodulatory protein m144, alpha-3 domain {Mur | 97.14 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.12 | |
| d1c5ch2 | 103 | Immunoglobulin heavy chain gamma constant domain 1 | 97.11 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.11 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.1 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.1 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.09 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.08 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.08 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.07 | |
| d1jbja2 | 100 | CD3 epsilon chain ectodomain fragment {Mouse (Mus | 97.06 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 97.06 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.05 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.02 | |
| d1i1ca1 | 103 | Immunoglobulin heavy chain gamma constant domain 2 | 97.02 | |
| d1igtb3 | 119 | Immunoglobulin heavy chain gamma constant domain 2 | 97.01 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.01 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.0 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.0 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.98 | |
| d1igyb3 | 116 | Immunoglobulin heavy chain gamma constant domain 2 | 96.98 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.97 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.96 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.93 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 96.93 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 96.92 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 96.91 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 96.9 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 96.9 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.9 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 96.9 | |
| d1jbja2 | 100 | CD3 epsilon chain ectodomain fragment {Mouse (Mus | 96.89 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.89 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 96.88 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 96.87 |
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=8.6e-18 Score=115.85 Aligned_cols=98 Identities=19% Similarity=0.294 Sum_probs=82.1
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++.. +....++.+.... ....|.|.++..+|+|.|+|
T Consensus 1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~--l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C 73 (101)
T d2cqva1 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQ--IQESEHMKVENSE-----NGSKLTILAARQEHCGCYTL 73 (101)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSB--CCCSSSEEEEECS-----SEEEEEETTCCTTTCEEEEE
T ss_pred CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCcee--eccCCcEEEEEec-----ceeEEEEeeCCcccCEEEEE
Confidence 4455566677888999999999999999999999999998 6666666543321 35689999999999999999
Q ss_pred EEEcCCCceeeEEEEEEEecCCCCC
Q psy8823 306 RAANKLGTSEKTVELFESIIPVCPP 330 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~~~p~~~~ 330 (386)
.|.|..|..+.++.|.|.+.|.+|.
T Consensus 74 ~a~N~~G~~~~~~~l~V~~~P~pP~ 98 (101)
T d2cqva1 74 LVENKLGSRQAQVNLTVVDKPDPPA 98 (101)
T ss_dssp EEECSSCEEECCEEEEEECSCSCCC
T ss_pred EEEECCCEEEEEEEEEEEecCCCcC
Confidence 9999999999999999999887553
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.72 E-value=2.3e-17 Score=110.43 Aligned_cols=87 Identities=22% Similarity=0.384 Sum_probs=75.7
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+.+..+..|+++.|.|.+.|.|.|.++|++++.. +....++.. ....|.|.++..+|+|.|+|
T Consensus 2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~--i~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C 70 (89)
T d1cs6a4 2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQP--LASQNRIEV---------SGGELRFSKLVLEDSGMYQC 70 (89)
T ss_dssp EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEE--CCCCSSEEE---------ETTEEEESSCCGGGCEEEEE
T ss_pred CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecc--ccccceeee---------eeeeEEEEeecccCCEEEEE
Confidence 6677777788899999999999999999999999999988 655555543 25579999999999999999
Q ss_pred EEEcCCCceeeEEEEEEE
Q psy8823 306 RAANKLGTSEKTVELFES 323 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~ 323 (386)
.|.|..|....++.|.|.
T Consensus 71 ~a~N~~G~~~~~~~l~V~ 88 (89)
T d1cs6a4 71 VAENKHGTVYASAELTVQ 88 (89)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCEEEEEEEEEEE
Confidence 999999999999998875
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.70 E-value=2.8e-17 Score=112.39 Aligned_cols=94 Identities=24% Similarity=0.341 Sum_probs=78.1
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++.... ......|.|.++..+|+|.|+|
T Consensus 2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~--l~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C 74 (97)
T d1koaa1 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE--LKQSVKYMKRY-----NGNDYGLTINRVKGDDKGEYTV 74 (97)
T ss_dssp CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEE--CCSBTTBBCCC-----STTEEEEEESCCCSGGGSCEEE
T ss_pred CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeec--cceeeEEEEEe-----cCCeeEEEeCCCceecCEEEEE
Confidence 6677777788899999999999999999999999999988 55554443221 1245679999999999999999
Q ss_pred EEEcCCCceeeEEEEEEEecC
Q psy8823 306 RAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~~~p 326 (386)
.|.|..|..+.++.|.|...+
T Consensus 75 ~a~N~~G~~~~~~~l~V~~~~ 95 (97)
T d1koaa1 75 RAKNSYGTKEEIVFLNVTRHS 95 (97)
T ss_dssp EEEETTEEEEEEECCEEECSC
T ss_pred EEEECCCEEEEEEEEEEeecC
Confidence 999999999999999887544
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.69 E-value=4.6e-17 Score=110.34 Aligned_cols=91 Identities=19% Similarity=0.305 Sum_probs=76.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+..++....+.+|+++.|.|.+.|+|.|.+.|++++.. +....++..... .....|.|.++..+|+|.|+
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~--i~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~ 74 (93)
T d1wiua_ 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG--AALAPELLVDAK-----SSTTSIFFPSAKRADSGNYK 74 (93)
T ss_dssp CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSS--CBCSTTSEEEEE-----TTEEEEECTTBCGGGCEEEE
T ss_pred CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeee--ceeeeeeeeccc-----ccceeeccccccccccEEEE
Confidence 57777777788899999999999999999999999999988 555554443321 13568999999999999999
Q ss_pred EEEEcCCCceeeEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v 322 (386)
|.|.|..|..+.++.|.|
T Consensus 75 c~a~N~~G~~~~~~~l~V 92 (93)
T d1wiua_ 75 LKVKNELGEDEAIFEVIV 92 (93)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEECCCEEEEEEEEEE
Confidence 999999999999999887
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.69 E-value=3e-16 Score=107.38 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=77.6
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....+....... .....|.|.++..+|+|.|+
T Consensus 4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~--i~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~ 77 (98)
T d1g1ca_ 4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVK--IERSDRIYWYWPE----DNVCELVIRDVTGEDSASIM 77 (98)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCCSSEEEEEEE----TTEEEEEECSCCGGGCEEEE
T ss_pred CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceE--EeeeeeeEEEecc----ceEEEEEeccCccccCEEEE
Confidence 57777777788899999999999999999999999999988 5555443332111 13457999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEe
Q psy8823 305 CRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~ 324 (386)
|.|.|..|..+.++.|.|..
T Consensus 78 c~a~N~~G~~~~~~~L~V~~ 97 (98)
T d1g1ca_ 78 VKAINIAGETSSHAFLLVQA 97 (98)
T ss_dssp EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEECCcEEEEEEEEEEEE
Confidence 99999999999999998863
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.68 E-value=2.4e-16 Score=108.76 Aligned_cols=94 Identities=24% Similarity=0.493 Sum_probs=79.0
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +....++..... ......|.|.++..+|.|.|
T Consensus 7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~--i~~~~~~~~~~~----~~~~~~L~I~~~~~~D~G~Y 80 (102)
T d1fhga_ 7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNP--VKESRHFQIDYD----EEGNCSLTISEVCGDDDAKY 80 (102)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEE--CCCSSSEEEEEC----TTCEEEEEESSCCGGGCEEE
T ss_pred CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeecc--ccceeeEeEEEe----cCceeeeEecCCCHHhCEEE
Confidence 357777777788889999999999999999999999999998 666665554321 12356899999999999999
Q ss_pred EEEEEcCCCceeeEEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v~ 323 (386)
+|.|.|..|..+.++.|.|.
T Consensus 81 ~C~a~N~~G~~~~~~~L~V~ 100 (102)
T d1fhga_ 81 TCKAVNSLGEATCTAELLVE 100 (102)
T ss_dssp EEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEECCcEEEEEEEEEEE
Confidence 99999999999999999885
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.7e-16 Score=108.33 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=78.5
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
+++|.+.... ....+....+.|.+.|+|.|++.|++++.. +..+.+..............+.|.|.+++.+|+|.
T Consensus 2 ~~pP~it~~~---~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~--l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 76 (103)
T d1wwbx_ 2 HFAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAI--LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD 76 (103)
T ss_dssp CCCCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEE--ECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred ccCCeeEEcC---CCccceeEEEEEEEEEeCCCEEEEEECCEE--eeeeeeeeeeecccccccceEEEEECCCCHHhCce
Confidence 4566654321 223567788999999999999999999998 66555555544444444457789999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 303 YICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
|+|.|.|..|+.++++.|.|.+.|.
T Consensus 77 Y~C~a~N~~G~~~~~~~v~V~~~P~ 101 (103)
T d1wwbx_ 77 YTLIAKNEYGKDEKQISAHFMGWPG 101 (103)
T ss_dssp EEEEEECSSCEEEEEEEECCSCCCC
T ss_pred EEEEEeccCCEEEEEEEEEEEeCCC
Confidence 9999999999999999999987775
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.67 E-value=1.4e-16 Score=107.28 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=71.0
Q ss_pred ecceEeeC-CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 224 FAPVITVP-KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 224 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
++|.+... +....+.+|+.+.|.|.+.|.|.|.+.|++++.. .... ....+..|.|.++..+|+|.
T Consensus 3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~--~~~~-----------~~~~~~~L~I~~v~~~D~G~ 69 (91)
T d1cs6a3 3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS--QTSK-----------WLSSEPLLHIQNVDFEDEGT 69 (91)
T ss_dssp EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSC--CSCC-----------CSBSSSEEEECSCCGGGCEE
T ss_pred cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccc--cceE-----------eeeeeeEEEeCCCCccCCEE
Confidence 56666654 5677888999999999999999999999997755 2111 11235679999999999999
Q ss_pred EEEEEEcCCCceeeEEEEEEE
Q psy8823 303 YICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
|+|.|.|..|..+.++.|.|.
T Consensus 70 Y~C~a~N~~G~~~~~~~l~V~ 90 (91)
T d1cs6a3 70 YECEAENIKGRDTYQGRIIIH 90 (91)
T ss_dssp EEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEECCCEEEEEEEEEEE
Confidence 999999999999999988874
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.66 E-value=3.9e-16 Score=104.43 Aligned_cols=86 Identities=22% Similarity=0.393 Sum_probs=70.2
Q ss_pred cceEeeCCC-cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKP-RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+. ...+.+|+++.|.|.+.|.|+|.+.|++++.. +... ++.. ....|.|.++..+|+|.|
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~--i~~~-~~~~---------~~~~L~i~~v~~~d~G~Y 69 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKP--LSGG-RATV---------TDSGLVIKGVKNGDKGYY 69 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEE--CCSS-SEEE---------ETTEEEESSCCSTTCEEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCcc--Cccc-cEEE---------eeeeEEECCCChhhCEEE
Confidence 466665544 45678899999999999999999999999988 4332 3322 244699999999999999
Q ss_pred EEEEEcCCCceeeEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v 322 (386)
+|.|.|..|..+.++.|.|
T Consensus 70 ~C~a~N~~G~~~~~~~l~V 88 (89)
T d1biha4 70 GCRATNEHGDKYFETLVQV 88 (89)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEECCCEEEEEEEEEE
Confidence 9999999999999988877
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=5.8e-16 Score=106.39 Aligned_cols=96 Identities=19% Similarity=0.436 Sum_probs=72.2
Q ss_pred ecceEeeCCCc--ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 224 FAPVITVPKPR--LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 224 ~~p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
.||.+...+.. ..+..|+.+.|.|.+.|.|.|.+.|++++.. +............ ....+.|.|.++..+|+|
T Consensus 2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~--i~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G 76 (100)
T d1qz1a3 2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEP--IENEEEDDEKHIF---SDDSSELTIRNVDKNDEA 76 (100)
T ss_dssp EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEE--CCCC--CCSSEEE---CTTSCEEEECSCCGGGCE
T ss_pred cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcc--cccccccceeEEe---ecCceEEEeCCCCcccCE
Confidence 35666654443 4567899999999999999999999999987 3322221111100 113578999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEEEe
Q psy8823 302 SYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.|+|.|.|..|..+.++.|.|..
T Consensus 77 ~Y~C~a~N~~G~~~~~~~l~V~~ 99 (100)
T d1qz1a3 77 EYVCIAENKAGEQDASIHLKVFA 99 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEEECCCEEEEEEEEEEEE
Confidence 99999999999999999998864
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7.3e-16 Score=106.81 Aligned_cols=101 Identities=20% Similarity=0.345 Sum_probs=74.8
Q ss_pred EEecceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 222 VEFAPVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 222 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
|+++|.+..... ...+....|.|.+.|+|.|++.|++++.. +....+...... .......+.|.|.+++.+|+|
T Consensus 2 V~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~--i~~~~~~~~~~~-~~~~~~~~~L~i~~~~~~D~G 75 (105)
T d1wwca_ 2 VYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQP--LRESKIIHVEYY-QEGEISEGCLLFNKPTHYNNG 75 (105)
T ss_dssp CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEE--CCCSSSEEEEEE-ECSSEEEEEEEEESCCGGGCE
T ss_pred EEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccc--cCCCcceeeeEE-eecccceEEEEEeecccccce
Confidence 456666543221 12344566888999999999999999988 555544443222 222335678999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEEEecCCC
Q psy8823 302 SYICRAANKLGTSEKTVELFESIIPVC 328 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 328 (386)
.|+|.|+|..|..++++.|.|...|.+
T Consensus 76 ~Y~C~a~N~~G~~~~~~~v~V~~~P~P 102 (105)
T d1wwca_ 76 NYTLIAKNPLGTANQTINGHFLKEPFP 102 (105)
T ss_dssp EEEEEEEETTEEEEEEEEECCSCCCCC
T ss_pred EEEEEEEcCCCEEEEEEEEEEEeCCCC
Confidence 999999999999999999999877653
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.63 E-value=1.7e-16 Score=106.94 Aligned_cols=86 Identities=14% Similarity=0.293 Sum_probs=71.5
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.+....+.+|+++.|.|.+.|.|.|.+.|++++.. +....++..... .....|.|.++..+|+|.|+|.|.|.
T Consensus 5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~--l~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~ 77 (91)
T d1tnna_ 5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV--LSTSARHQVTTT-----KYKSTFEISSVQASDEGNYSVVVENS 77 (91)
T ss_dssp CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSST--TCSSSSCEEEEC-----SSEEEEECSSCCSCCCEEEEEECBCS
T ss_pred CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecc--cccccceeeeee-----cceeEEeecCCCHHHCEEEEEEEEEC
Confidence 45667888999999999999999999999999987 555544433221 24678999999999999999999999
Q ss_pred CCceeeEEEEEEE
Q psy8823 311 LGTSEKTVELFES 323 (386)
Q Consensus 311 ~g~~~~~~~l~v~ 323 (386)
.|..+.++.|.|.
T Consensus 78 ~G~~~~~~~l~V~ 90 (91)
T d1tnna_ 78 EGKQEAEFTLTIQ 90 (91)
T ss_dssp SCBCCEEEEEECC
T ss_pred CCEEEEEEEEEEE
Confidence 9999999888774
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.2e-15 Score=100.85 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=66.0
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
...+.+|++++|.|.+.|.|+|.+.|++++.... . ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~--~---------------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~ 70 (84)
T d2nxyb2 8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--Q---------------GGKTLSVSQLELQDSGTWTCTVLQNQKK 70 (84)
T ss_dssp SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEE--E---------------ESSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CeEEECCCeEEEEEEeEcCCchheEEEeecccce--e---------------eeeeeeeeecccccccEEEEEEEeCCCE
Confidence 4567899999999999999999999999876521 1 3556899999999999999999999999
Q ss_pred eeeEEEEEEEecC
Q psy8823 314 SEKTVELFESIIP 326 (386)
Q Consensus 314 ~~~~~~l~v~~~p 326 (386)
.+..+.|.|...|
T Consensus 71 ~~~~~~v~V~~~~ 83 (84)
T d2nxyb2 71 VEFKIDIVVLAFQ 83 (84)
T ss_dssp EEEEEEECEECCC
T ss_pred EEEEEEEEEEecC
Confidence 9999999987655
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.61 E-value=3e-15 Score=100.05 Aligned_cols=86 Identities=27% Similarity=0.472 Sum_probs=69.8
Q ss_pred CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCce
Q psy8823 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGT 214 (386)
Q Consensus 135 p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 214 (386)
|.+...+...+.+.+|+++.|.|.+.|.|.|.++|++++..+... ........|.|.++..+|+|.|+|.+.|..|. .
T Consensus 3 P~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~ 80 (89)
T d1biha4 3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDSGLVIKGVKNGDKGYYGCRATNEHGD-K 80 (89)
T ss_dssp EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETTEEEESSCCSTTCEEEEEEEEETTEE-E
T ss_pred CeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEeeeeEEECCCChhhCEEEEEEEEECCCE-E
Confidence 444444455667889999999999999999999999999988543 34445667999999999999999999999887 4
Q ss_pred eeeEEEEE
Q psy8823 215 RRNIAVEV 222 (386)
Q Consensus 215 ~~~~~l~v 222 (386)
...+.|.|
T Consensus 81 ~~~~~l~V 88 (89)
T d1biha4 81 YFETLVQV 88 (89)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 56666665
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.61 E-value=4.1e-15 Score=99.28 Aligned_cols=81 Identities=26% Similarity=0.520 Sum_probs=71.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+..|+++.|.|.+.|.|.|.++|++++..+............|.|.++..+|+|.|+|.+.|..|. ......|.
T Consensus 8 ~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~ 86 (89)
T d1cs6a4 8 ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT-VYASAELT 86 (89)
T ss_dssp CCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEE
T ss_pred CCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCE-EEEEEEEE
Confidence 45567899999999999999999999999999998877777777889999999999999999999999987 45567777
Q ss_pred EE
Q psy8823 222 VE 223 (386)
Q Consensus 222 v~ 223 (386)
|+
T Consensus 87 V~ 88 (89)
T d1cs6a4 87 VQ 88 (89)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.60 E-value=3.4e-15 Score=101.81 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=73.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.|.|...+.+..+.+|+++.|.|.+.+.|.+.|+|++++..+. .+.++.... ....+.|.|.++
T Consensus 1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~--------------~~~~~~~~~--~~~~~~L~I~~~ 64 (97)
T d1koaa1 1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK--------------QSVKYMKRY--NGNDYGLTINRV 64 (97)
T ss_dssp SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECC--------------SBTTBBCCC--STTEEEEEESCC
T ss_pred CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccc--------------eeeEEEEEe--cCCeeEEEeCCC
Confidence 4788888899999999999999999999999999999886542 122333322 235668999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
+.+|+|.|+|.+.|..+. .+..+.|.|...
T Consensus 65 ~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~ 94 (97)
T d1koaa1 65 KGDDKGEYTVRAKNSYGT-KEEIVFLNVTRH 94 (97)
T ss_dssp CSGGGSCEEEEEEETTEE-EEEEECCEEECS
T ss_pred ceecCEEEEEEEEECCCE-EEEEEEEEEeec
Confidence 999999999999987554 466777777644
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.59 E-value=1.6e-15 Score=103.32 Aligned_cols=82 Identities=15% Similarity=0.312 Sum_probs=65.8
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
..+..|+.+.|.|.+.|+|.|.+.|++++.. +....+...... ......|.|.++..+|+|.|+|.|.|..|..
T Consensus 15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~--l~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (97)
T d3dara1 15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKE--FKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGSI 88 (97)
T ss_dssp EEECTTCCEEEECCEEEESCCEEEEEETTEE--CCGGGSTTCCEE----EGGGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred EEECCCCcEEEEEEEeEECCCEEEEEECCEe--ccccCceeeEEE----cCCcEEEEECCCCcccCEEEEEEEEECCCEE
Confidence 3467899999999999999999999999988 443332211111 1134689999999999999999999999999
Q ss_pred eeEEEEEE
Q psy8823 315 EKTVELFE 322 (386)
Q Consensus 315 ~~~~~l~v 322 (386)
+.++.|.|
T Consensus 89 ~~~~~l~V 96 (97)
T d3dara1 89 NHTYHLDV 96 (97)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99998877
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=9.9e-15 Score=100.19 Aligned_cols=95 Identities=22% Similarity=0.299 Sum_probs=73.3
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. +.++.+.. .....+|.|.+++
T Consensus 1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~--------------~~~~~~~~--~~~~~~L~I~~~~ 64 (101)
T d2cqva1 1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQE--------------SEHMKVEN--SENGSKLTILAAR 64 (101)
T ss_dssp CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCC--------------SSSEEEEE--CSSEEEEEETTCC
T ss_pred CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeecc--------------CCcEEEEE--ecceeEEEEeeCC
Confidence 4555667788899999999999999999999999999876521 22333322 2234589999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEecCCe
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVRRPPV 136 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 136 (386)
.+|+|.|+|.+.|..+ ..+..+.|.|...|.
T Consensus 65 ~~D~G~Y~C~a~N~~G-~~~~~~~l~V~~~P~ 95 (101)
T d2cqva1 65 QEHCGCYTLLVENKLG-SRQAQVNLTVVDKPD 95 (101)
T ss_dssp TTTCEEEEEEEECSSC-EEECCEEEEEECSCS
T ss_pred cccCEEEEEEEEECCC-EEEEEEEEEEEecCC
Confidence 9999999999998754 457778888887764
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.59 E-value=5.1e-15 Score=100.78 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=66.8
Q ss_pred eeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
..+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+... ..............+|.|.+++.+|+
T Consensus 8 ~~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~--------------~~~~~~~~~~~~~~~L~I~~~~~~D~ 73 (97)
T d1biha3 8 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN--------------PEDRITRHNRTSGKRLLFKTTLPEDE 73 (97)
T ss_dssp EECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCC--------------TTSSEESCSSSTTSEEEESSCCGGGC
T ss_pred eCCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeecccc--------------ceeeeeeeeecCCCEEEEEecccccc
Confidence 3457888999999999999999999999999988765211 11111112222334899999999999
Q ss_pred eEEEEEeEEcccceeeeEEEEEE
Q psy8823 109 GYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 109 G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
|.|+|.+.|..+...+..+.|.|
T Consensus 74 G~Y~C~a~N~~G~~~s~s~~L~V 96 (97)
T d1biha3 74 GVYTCEVDNGVGKPQKHSLKLTV 96 (97)
T ss_dssp EEEEEEECCSSSSCEEEEEEEEE
T ss_pred EEEEEEEEECCCcEEEEEEEEEE
Confidence 99999999887766666777776
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=5.1e-15 Score=99.29 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=65.3
Q ss_pred cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 234 RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
...+..|+.+.|.|.+.|.|.|.+.|++++.. ........ ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~--~~~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~ 79 (90)
T d1vcaa2 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS--PLNGKVTN--------EGTTSTLTMNPVSFGNEHSYLCTATCESRK 79 (90)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCC--CCSSEEEE--------ETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred cEEEECCCEEEEEEeccCCCCceEEEEecCcc--ceeeeeee--------ecCCcEEEEecccccccceEEEEEEeCCCE
Confidence 34456899999999999999999999998776 32222211 124678999999999999999999999999
Q ss_pred eeeEEEEEEE
Q psy8823 314 SEKTVELFES 323 (386)
Q Consensus 314 ~~~~~~l~v~ 323 (386)
.+.++.|.|.
T Consensus 80 ~~~~~~v~V~ 89 (90)
T d1vcaa2 80 LEKGIQVEIY 89 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 9999998874
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=8.4e-15 Score=103.00 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=75.5
Q ss_pred eCCCcccccCCCcEEEEEEEEecC---CCeeEEEeCCeeee-eecCceeEEeee-eecCceeeeEEEEeecccCCCeEEE
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYP---PPAIVWIKEDTQQV-LTNNQHYSISHF-ATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p---~~~~~W~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
..+....+.+|++++|.|.+.|.| .|.+.|++++.... .....++..... ..........|.|.++..+|+|.|+
T Consensus 5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 84 (113)
T d2dava1 5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR 84 (113)
T ss_dssp SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence 355677888999999999999998 57999999875421 122223322222 2222334668999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEEecCCCCC
Q psy8823 305 CRAANKLGTSEKTVELFESIIPVCPP 330 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~~~p~~~~ 330 (386)
|.|.|..|..++++.|.|...+..+|
T Consensus 85 C~a~N~~G~~~~~~~L~V~~~~~~~p 110 (113)
T d2dava1 85 CEVTYKDKFDSCSFDLEVHESTGTTP 110 (113)
T ss_dssp EEEECSSCEEEECCEEEEECCCCSCC
T ss_pred EEEEeCCCEEEEEEEEEEEcCCCcCC
Confidence 99999999999999999987665544
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=3.8e-15 Score=100.27 Aligned_cols=90 Identities=14% Similarity=0.263 Sum_probs=70.4
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......+... .++.|.|.+++.+|+|.|+|
T Consensus 2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~--------~~~~L~I~~~~~~D~G~Y~C 73 (92)
T d1epfa2 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--------SNNYLQIRGIKKTDEGTYRC 73 (92)
T ss_dssp SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC--------TTSCEEETTCCGGGCEEEEE
T ss_pred cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeee--------eeeeEEECCCCHHhCEEEEE
Confidence 3455567778899999999999999999999999999988433333333221 23569999999999999999
Q ss_pred EEEcCCCceeeEEEEEEE
Q psy8823 306 RAANKLGTSEKTVELFES 323 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~ 323 (386)
.|.|..|.......+.|.
T Consensus 74 ~a~n~~~~~~~~~~i~Vi 91 (92)
T d1epfa2 74 EGRILARGEINFKDIQVI 91 (92)
T ss_dssp EEEEGGGTEEEEEEEEEE
T ss_pred EEEECcCCEEEEEEEEEE
Confidence 999998877766666653
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.58 E-value=1.1e-14 Score=101.90 Aligned_cols=98 Identities=17% Similarity=0.265 Sum_probs=69.8
Q ss_pred cceEeeC-CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeee--ecCc--eeEEe--eeeecCceeeeEEEEeeccc
Q psy8823 225 APVITVP-KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVL--TNNQ--HYSIS--HFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 225 ~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~--~~~~--~~~~~--~~~~~~~~~~~~L~i~~~~~ 297 (386)
+|.+... +....+.+|+++.|.|.+.|.|.|.+.|++++..... .... ..... ............|.|.++..
T Consensus 4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 83 (109)
T d2fdbp2 4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF 83 (109)
T ss_dssp CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence 4666543 5668899999999999999999999999987644111 0100 01100 11111223467899999999
Q ss_pred CCCeEEEEEEEcCCCceeeEEEEEE
Q psy8823 298 RQYGSYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~g~~~~~~~l~v 322 (386)
+|+|.|+|.|.|..|...+++.|.|
T Consensus 84 ~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 84 EDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred HHCeEEEEEEEECCCEEEEEEEEEE
Confidence 9999999999999999999999877
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.7e-15 Score=96.68 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=64.2
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
|.+...+....+.+|+++.|.|.+.|.|.| ++.|++|+.. +.... ...+.|.....+|+|.|+
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~--i~~~~--------------~~~~~l~~~~~~d~G~Y~ 65 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK--IGGPA--------------PSPSVLNVTGVTQSTMFS 65 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEE--CSCSE--------------ESSEEEEECCCSSCEEEE
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEE--CCCCC--------------CcceEEecCCccccEEEE
Confidence 667777778888999999999999999988 8999999987 43221 233456667778999999
Q ss_pred EEEEcCCCcee-eEEEEEE
Q psy8823 305 CRAANKLGTSE-KTVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~-~~~~l~v 322 (386)
|.|.|..|... ..+.|.|
T Consensus 66 C~A~N~~G~~~S~~~~v~V 84 (85)
T d1rhfa2 66 CEAHNLKGLASSRTATVHL 84 (85)
T ss_dssp EEEEETTEEEECCCEEEEE
T ss_pred EEEEcCCCcEEEEEEEEEE
Confidence 99999999653 4677665
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.58 E-value=8e-15 Score=100.09 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=72.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...+.+..+.+|+.++|.|.+.+.|.+.++|++++..+.. +.++.... ...+.++|.|.+
T Consensus 3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~--------------~~~~~~~~-~~~~~~~L~I~~ 67 (98)
T d1g1ca_ 3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER--------------SDRIYWYW-PEDNVCELVIRD 67 (98)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC--------------CSSEEEEE-EETTEEEEEECS
T ss_pred cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEee--------------eeeeEEEe-ccceEEEEEecc
Confidence 467888888899999999999999999999999999998865421 11111111 112456899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
++.+|+|.|+|.+.|..+. .+....|.|..
T Consensus 68 ~~~~D~G~Y~c~a~N~~G~-~~~~~~L~V~~ 97 (98)
T d1g1ca_ 68 VTGEDSASIMVKAINIAGE-TSSHAFLLVQA 97 (98)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred CccccCEEEEEEEEECCcE-EEEEEEEEEEE
Confidence 9999999999999987554 46667777753
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.3e-16 Score=102.76 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=64.1
Q ss_pred ecceEee--CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 224 FAPVITV--PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 224 ~~p~~~~--~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
|+|.+.. .+....+.+|+.+.|.|.+.|+|.|++.|++++.. +... +.+.+++.+|+|
T Consensus 1 Y~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~--~~~~------------------~~~~~v~~~d~G 60 (84)
T d2oz4a3 1 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF--PLPI------------------GESVTVTRDLEG 60 (84)
T ss_dssp EEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTE--ECCT------------------TSCEECCGGGCE
T ss_pred CCCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeecc--ceee------------------eeeeccccCCCC
Confidence 3455532 24456778999999999999999999999999876 3221 124467889999
Q ss_pred EEEEEEEcCCCceeeEEEEEEEe
Q psy8823 302 SYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.|+|.|.|..|+.+.++.|.|..
T Consensus 61 ~Y~C~A~N~~G~~~~~~~l~V~~ 83 (84)
T d2oz4a3 61 TYLCRARSTQGEVTREVTVNVLS 83 (84)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEEcCCCEEEEEEEEEEEC
Confidence 99999999999999999998853
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.4e-15 Score=100.59 Aligned_cols=88 Identities=27% Similarity=0.326 Sum_probs=67.4
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
|.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+.. ..+...........+.|.|.+++.+|+|.
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~--------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 68 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQN--------------LDQLYIPVSEQHWIGFLSLKSVERSDAGR 68 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCS--------------SEEEEEEEETTEEEEEEEESSCCGGGCEE
T ss_pred CeeEEEcCCCeEEEEEEEEecCCceEEEEEeeccccc--------------ceeeeeeecccCceeeEEECCCCcccCEE
Confidence 5667789999999999999999999999998865421 11222222333445689999999999999
Q ss_pred EEEEeEEcccceeeeEEEEEEe
Q psy8823 111 YRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
|+|.+.|..+...+..+.|.|.
T Consensus 69 Y~C~a~N~~G~~~S~~~~l~V~ 90 (91)
T d1rhfa1 69 YWCQVEDGGETEISQPVWLTVE 90 (91)
T ss_dssp EEEEESSCTTCEECCCEEEEEE
T ss_pred EEEEEEECCCCEEEEEEEEEEE
Confidence 9999998777666777777764
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.58 E-value=4.6e-15 Score=100.98 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
+....+..|+++.|.|.+.|.|.|.+.|++++..+.......+.. ........|.|.+++.+|+|.|+|.|.|..
T Consensus 10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~ 84 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR-----HNRTSGKRLLFKTTLPEDEGVYTCEVDNGV 84 (97)
T ss_dssp CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES-----CSSSTTSEEEESSCCGGGCEEEEEEECCSS
T ss_pred CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeee-----eeecCCCEEEEEeccccccEEEEEEEEECC
Confidence 356778899999999999999999999999998833222222211 112235679999999999999999999999
Q ss_pred Ccee-eEEEEEE
Q psy8823 312 GTSE-KTVELFE 322 (386)
Q Consensus 312 g~~~-~~~~l~v 322 (386)
|... .++.|.|
T Consensus 85 G~~~s~s~~L~V 96 (97)
T d1biha3 85 GKPQKHSLKLTV 96 (97)
T ss_dssp SSCEEEEEEEEE
T ss_pred CcEEEEEEEEEE
Confidence 9865 4777776
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=6.6e-15 Score=98.68 Aligned_cols=80 Identities=14% Similarity=0.298 Sum_probs=65.3
Q ss_pred CCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+....+.+|+++.|.|.+. +.|.+.+.|++++.. +...... ...+.|.|.++..+|+|.|+|.|.|
T Consensus 8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~--~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~a~N 75 (89)
T d1gl4b_ 8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNG--KLPSRAM----------DFNGILTIRNVQPSDAGTYVCTGSN 75 (89)
T ss_dssp SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGB--CCCTTEE----------EETTEEEECSCCGGGCEEEEEEEEC
T ss_pred CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCce--eeccccE----------eeceEEEEecCCcccCEEEEEEEEE
Confidence 34456788999999999997 577889999999877 3332221 1356799999999999999999999
Q ss_pred CCCceeeEEEEEE
Q psy8823 310 KLGTSEKTVELFE 322 (386)
Q Consensus 310 ~~g~~~~~~~l~v 322 (386)
..|..+.++.|.|
T Consensus 76 ~~G~~~~~~~l~V 88 (89)
T d1gl4b_ 76 MFAMDQGTATLHV 88 (89)
T ss_dssp SSCEEEEEEEEEE
T ss_pred CCCEEEEEEEEEE
Confidence 9999999998877
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.57 E-value=6.5e-15 Score=98.93 Aligned_cols=87 Identities=32% Similarity=0.524 Sum_probs=69.3
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
+|.+....+....+.+|+.++|.|.+.|.|.+.+.|++++..... .....+..|.|.+++.+|+|.|+|.+.|..|.
T Consensus 4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~- 80 (91)
T d1cs6a3 4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWLSSEPLLHIQNVDFEDEGTYECEAENIKGR- 80 (91)
T ss_dssp EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--CCSBSSSEEEECSCCGGGCEEEEEEEEETTEE-
T ss_pred CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce--EeeeeeeEEEeCCCCccCCEEEEEEEEECCCE-
Confidence 344444445677899999999999999999999999997765432 22234568999999999999999999999987
Q ss_pred eeeeEEEEEE
Q psy8823 214 TRRNIAVEVE 223 (386)
Q Consensus 214 ~~~~~~l~v~ 223 (386)
....+.|.|+
T Consensus 81 ~~~~~~l~V~ 90 (91)
T d1cs6a3 81 DTYQGRIIIH 90 (91)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 5567777765
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.5e-14 Score=101.14 Aligned_cols=98 Identities=13% Similarity=0.217 Sum_probs=73.7
Q ss_pred eEeeCCCcccccCCCcEEEEEEEEecC---CCeeEEEeCCeeeeee-cCceeEEee-eeecCceeeeEEEEeecccCCCe
Q psy8823 227 VITVPKPRLGQALQYDMDLECHVEAYP---PPAIVWIKEDTQQVLT-NNQHYSISH-FATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~C~~~g~p---~~~~~W~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
.+...+....+..|++++|.|.+.|.| .|.+.|++++...... ...++.... ...........|.|.+++.+|+|
T Consensus 6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 85 (110)
T d2avga1 6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG 85 (110)
T ss_dssp SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence 455566778888999999999999998 5789999987542221 222222221 12223335678999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEEEe
Q psy8823 302 SYICRAANKLGTSEKTVELFESI 324 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v~~ 324 (386)
.|+|.|.|..|..++++.|.|..
T Consensus 86 ~Y~C~a~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 86 GYRCEVSTKDKFDCSNFNLTVHE 108 (110)
T ss_dssp EEEEEEEETTEEEEEEEEEEEES
T ss_pred EEEEEEEECCCeEEEEEEEEEEe
Confidence 99999999999999999999874
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=9.3e-16 Score=103.44 Aligned_cols=89 Identities=18% Similarity=0.309 Sum_probs=72.1
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe-EE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG-SY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y 303 (386)
.|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.. +..... .........|.|.++..+|.| .|
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~--~~~~~~-------~~~~~~~~~L~i~~~~~~d~G~~Y 72 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELE--QSATVM-------KSGGLPSLGLTLANVTSDLNRKNV 72 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCC--SSEEEC-------CCCCSSEEEEEEESCCSTTTTCCE
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCce--eeeeee-------eeeeccceeEEEccccccccceEE
Confidence 47777777788899999999999999999999999999876 221111 111234678999999999999 69
Q ss_pred EEEEEcCCCceeeEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v 322 (386)
+|.|.|..|..+.++.|.|
T Consensus 73 ~C~a~N~~G~~~~s~~l~V 91 (92)
T d2ifga1 73 TCWAENDVGRAEVSVQVNV 91 (92)
T ss_dssp EECCEETTEECCEEECCCC
T ss_pred EEEEEcCCCEEEEEEEEEE
Confidence 9999999999999888765
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.57 E-value=1.3e-14 Score=99.83 Aligned_cols=94 Identities=20% Similarity=0.391 Sum_probs=72.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+. .+.++..... ..+.++|.|.+
T Consensus 7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~--------------~~~~~~~~~~-~~~~~~L~I~~ 71 (102)
T d1fhga_ 7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVK--------------ESRHFQIDYD-EEGNCSLTISE 71 (102)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC--------------CSSSEEEEEC-TTCEEEEEESS
T ss_pred CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeecccc--------------ceeeEeEEEe-cCceeeeEecC
Confidence 35778888888889999999999999999999999999986652 1223333221 23456899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
++.+|+|.|+|.+.|..+. .+..+.|.|.
T Consensus 72 ~~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~ 100 (102)
T d1fhga_ 72 VCGDDDAKYTCKAVNSLGE-ATCTAELLVE 100 (102)
T ss_dssp CCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred CCHHhCEEEEEEEEECCcE-EEEEEEEEEE
Confidence 9999999999999987654 4666777764
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.7e-15 Score=101.98 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=67.7
Q ss_pred ccccCCCcEE---EEEEEEecCCCeeEEEeCCeeeeeecCceeEEe--eeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 235 LGQALQYDMD---LECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS--HFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 235 ~~~~~g~~~~---l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
..+..|.... +.|.+.|+|.|.+.|++++.. +......... ..........+.|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~--l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N 84 (107)
T d1he7a_ 7 VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSV--LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 84 (107)
T ss_dssp CCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEE--CCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred eEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeE--ccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence 3344444444 556899999999999999998 4444333322 22222333567899999999999999999999
Q ss_pred CCCceeeEEEEEEEecCC
Q psy8823 310 KLGTSEKTVELFESIIPV 327 (386)
Q Consensus 310 ~~g~~~~~~~l~v~~~p~ 327 (386)
..|..++++.|.|..+|.
T Consensus 85 ~~G~~~~~i~v~v~~~P~ 102 (107)
T d1he7a_ 85 PFGQASASIMAAFMDNPF 102 (107)
T ss_dssp TTEEEEEEEEECCCSCTT
T ss_pred CCCEEEEEEEEEEEcCCC
Confidence 999999999999887764
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=5.4e-15 Score=98.63 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=64.4
Q ss_pred CCCcccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
+.....+..|+++.|.|.+. |.|.|.+.|++.+.. +... .. ....+.|.|.+++.+|+|.|+|.|.|
T Consensus 9 p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~--~~~~---~~-------~~~~~~L~i~~v~~~D~G~Y~C~Asn 76 (90)
T d1gsma1 9 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS--LGAV---QS-------DTGRSVLTVRNASLSAAGTRVCVGSC 76 (90)
T ss_dssp CCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTT--TCCE---EE-------ESSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeee--eeee---ec-------cCceeeEEcCccChhhCCcEEEEEEe
Confidence 33446677999999999985 788999999988765 2111 10 12467899999999999999999999
Q ss_pred CCCceeeEEEEEE
Q psy8823 310 KLGTSEKTVELFE 322 (386)
Q Consensus 310 ~~g~~~~~~~l~v 322 (386)
..|+.+.++.|.|
T Consensus 77 ~~g~~~~s~~l~V 89 (90)
T d1gsma1 77 GGRTFQHTVQLLV 89 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEE
Confidence 9999999999877
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1e-14 Score=96.03 Aligned_cols=83 Identities=8% Similarity=0.143 Sum_probs=65.0
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
|.|...|.+..+.+|+++.|.|.+.+.|.+ .|+|+|++..+... ....+.|...
T Consensus 2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~-------------------------~~~~~~l~~~ 56 (85)
T d1rhfa2 2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------------------------APSPSVLNVT 56 (85)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS-------------------------EESSEEEEEC
T ss_pred CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC-------------------------CCcceEEecC
Confidence 778889999999999999999999998876 89999988654211 0013455566
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
..+|+|.|+|.|.|..+...+..+.|.|+
T Consensus 57 ~~~d~G~Y~C~A~N~~G~~~S~~~~v~Vk 85 (85)
T d1rhfa2 57 GVTQSTMFSCEAHNLKGLASSRTATVHLQ 85 (85)
T ss_dssp CCSSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred CccccEEEEEEEEcCCCcEEEEEEEEEEC
Confidence 67899999999999887666777777763
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.4e-15 Score=101.80 Aligned_cols=94 Identities=18% Similarity=0.323 Sum_probs=71.6
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeee--eec--CceeEEeeeeecCceeeeEEEEeecc-cC
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQV--LTN--NQHYSISHFATADEFTDTTIRVITIE-KR 298 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~-~~ 298 (386)
||.+...+....+.+|+.+.|.|.+.|.|+| .+.|++++.... ... ..++.... ......|.|.++. .+
T Consensus 2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~~ 76 (101)
T d3b5ha1 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS-----SQGRSELHIENLNMEA 76 (101)
T ss_dssp SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE-----ETTEEEEEECSCCTTT
T ss_pred CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEe-----CCCEEEEEEecccccc
Confidence 6777777777888999999999999999988 799998764321 111 12222211 1135689999998 57
Q ss_pred CCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 299 QYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 299 d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
|+|.|+|.|.|..|..+.++.|.|+
T Consensus 77 D~G~Y~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 77 DPGQYRCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp SSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEEEEEECCCEEEEEEEEEEC
Confidence 9999999999999999999998874
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=2.5e-14 Score=97.41 Aligned_cols=94 Identities=17% Similarity=0.350 Sum_probs=69.2
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
.+.+.|....+.+|+++.|.|.+.+.|. +.+.|++++.... .....++..... .....+|.|.+++
T Consensus 2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~------------~~~~~~~~~~~~-~~~~~~L~I~~~~ 68 (97)
T d1epfa1 2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKL------------SPNQQRISVVWN-DDDSSTLTIYNAN 68 (97)
T ss_dssp CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEE------------CCBSSSEEEEEE-ETTEEEEEECSCC
T ss_pred EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeee------------eeccccEEEEee-cCcceEEEcccCc
Confidence 3667788888999999999999998764 6899999654321 011222322211 2345689999999
Q ss_pred CCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 105 ETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
.+|+|.|+|.+.|..+...++.+.|.|+
T Consensus 69 ~~D~G~Y~C~a~N~~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 69 IDDAGIYKCVVTAEDGTQSEATVNVKIF 96 (97)
T ss_dssp GGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred hhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence 9999999999999877666777888876
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.56 E-value=1.1e-14 Score=98.37 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=70.6
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. +.++.... .....+|.|.++
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~--------------~~~~~~~~--~~~~~~L~I~~~ 65 (93)
T d1wiua_ 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL--------------APELLVDA--KSSTTSIFFPSA 65 (93)
T ss_dssp CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBC--------------STTSEEEE--ETTEEEEECTTB
T ss_pred CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeecee--------------eeeeeecc--cccceeeccccc
Confidence 57787778888899999999999999999999999998876521 22222221 124558999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
+.+|+|.|+|.+.|..+. .+..+.|.|
T Consensus 66 ~~~D~G~Y~c~a~N~~G~-~~~~~~l~V 92 (93)
T d1wiua_ 66 KRADSGNYKLKVKNELGE-DEAIFEVIV 92 (93)
T ss_dssp CGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred cccccEEEEEEEEECCCE-EEEEEEEEE
Confidence 999999999999987654 466677766
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=3.3e-14 Score=96.76 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=66.3
Q ss_pred CCCcccccCCCcEEEEEEEEecCC-CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPP-PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+....+..|+++.|.|.+.|.|+ +.+.|++++.........++...... .....|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~I~~~~~~D~G~Y~C~a~N 81 (97)
T d1epfa1 6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVVTA 81 (97)
T ss_dssp ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred ECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeec----CcceEEEcccCchhhceEEEEEEEe
Confidence 445667789999999999999986 69999996544333344444333211 1356899999999999999999999
Q ss_pred CCCce-eeEEEEEEE
Q psy8823 310 KLGTS-EKTVELFES 323 (386)
Q Consensus 310 ~~g~~-~~~~~l~v~ 323 (386)
..|.. ++++.|.|.
T Consensus 82 ~~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 82 EDGTQSEATVNVKIF 96 (97)
T ss_dssp TTTEEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEEE
Confidence 99975 456777663
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=8.1e-15 Score=101.30 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=68.0
Q ss_pred CCCcccccCCCcEEEEEEEEecCC-CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPP-PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+....+..|+++.|.|.+.|.|. |.+.|++++............. ...........|.|.++..+|+|.|+|.|.|
T Consensus 9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 86 (104)
T d2aw2a1 9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTS--WKEEKNISFFILHFEPVLPNDNGSYRCSANF 86 (104)
T ss_dssp TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEE--EEECSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeee--EEecCCceEEEEEEccccHHHCCeEEEEEEc
Confidence 344556789999999999999984 8999999887643333222211 1112223456799999999999999999999
Q ss_pred CCCcee-eEEEEEEEe
Q psy8823 310 KLGTSE-KTVELFESI 324 (386)
Q Consensus 310 ~~g~~~-~~~~l~v~~ 324 (386)
..|... .++.|.|.+
T Consensus 87 ~~G~~~s~~~~l~V~e 102 (104)
T d2aw2a1 87 QSNLIESHSTTLYVTD 102 (104)
T ss_dssp TTEEEECCCEEEEEEC
T ss_pred CCCeEEEEEEEEEEEE
Confidence 999865 478888764
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=4.4e-14 Score=94.96 Aligned_cols=82 Identities=27% Similarity=0.525 Sum_probs=68.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE------eeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY------RGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
|..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..+...+
T Consensus 3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S 82 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS 82 (91)
T ss_dssp CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence 5667899999999999999999999999999998866544322 2357999999999999999999999887666
Q ss_pred eeEEEEEE
Q psy8823 216 RNIAVEVE 223 (386)
Q Consensus 216 ~~~~l~v~ 223 (386)
..+.|.|.
T Consensus 83 ~~~~l~V~ 90 (91)
T d1rhfa1 83 QPVWLTVE 90 (91)
T ss_dssp CCEEEEEE
T ss_pred EEEEEEEE
Confidence 77777764
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.53 E-value=9.9e-15 Score=99.43 Aligned_cols=89 Identities=21% Similarity=0.398 Sum_probs=66.4
Q ss_pred ecceEeeCCCcccccC---CCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCC
Q psy8823 224 FAPVITVPKPRLGQAL---QYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~---g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
++|.+...+....+.. ++++.|.|.+.|.|.|.+.|++++..+........... ....|.|..+..+|+
T Consensus 3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~--------~~~~l~i~~~~~~d~ 74 (97)
T d1cs6a1 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV--------AGDLVISNPVKAKDA 74 (97)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE--------TTEEEEESCCHHHHC
T ss_pred cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee--------eeeEEEEecccccCC
Confidence 4677776666655544 47899999999999999999999988433333322221 245688888999999
Q ss_pred eEEEEEEEcCCCcee-eEEEE
Q psy8823 301 GSYICRAANKLGTSE-KTVEL 320 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~-~~~~l 320 (386)
|.|+|.|.|..|... .++.|
T Consensus 75 G~Y~C~a~N~~G~~~S~~a~L 95 (97)
T d1cs6a1 75 GSYQCVATNARGTVVSREASL 95 (97)
T ss_dssp EEEEEEEEETTEEEECCCEEE
T ss_pred EEEEEEEEECCCEEEEEEEEE
Confidence 999999999999764 35555
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.52 E-value=6.1e-14 Score=93.85 Aligned_cols=84 Identities=27% Similarity=0.464 Sum_probs=68.2
Q ss_pred eecCCCceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCcee
Q psy8823 137 ISDNSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTR 215 (386)
Q Consensus 137 ~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 215 (386)
+....+....+.+|+++.|.|.+. +.|.+.+.|++++..+.... ....+..|.|.+++.+|+|.|+|.+.|..|. .+
T Consensus 4 v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~ 81 (89)
T d1gl4b_ 4 VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFNGILTIRNVQPSDAGTYVCTGSNMFAM-DQ 81 (89)
T ss_dssp EEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-EEEETTEEEECSCCGGGCEEEEEEEECSSCE-EE
T ss_pred EEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc-cEeeceEEEEecCCcccCEEEEEEEEECCCE-EE
Confidence 333445667899999999999996 67788999999988776543 3445678999999999999999999999986 56
Q ss_pred eeEEEEE
Q psy8823 216 RNIAVEV 222 (386)
Q Consensus 216 ~~~~l~v 222 (386)
..+.|.|
T Consensus 82 ~~~~l~V 88 (89)
T d1gl4b_ 82 GTATLHV 88 (89)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6677766
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.1e-15 Score=108.09 Aligned_cols=106 Identities=20% Similarity=0.349 Sum_probs=78.5
Q ss_pred EEEEecceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 220 VEVEFAPVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 220 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
|.|.++|.+.. +....+.+|+.+.|.|.+.|.|++ .+.|++++..+......++.+..... .....+.|.|.++...
T Consensus 2 L~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~-~~~~~s~L~I~~v~~~ 79 (115)
T d2crya1 2 LTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST-EEGVISTLTISNIVRA 79 (115)
T ss_dssp CCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEE-TTEEEEEEECTTCCHH
T ss_pred eEEecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeecc-ccCcEEEEEEeccchh
Confidence 45677887754 445678899999999999996554 79999999884333333343332222 2223567999999999
Q ss_pred C-CeEEEEEEEcCCCceeeEEEEEEEecCC
Q psy8823 299 Q-YGSYICRAANKLGTSEKTVELFESIIPV 327 (386)
Q Consensus 299 d-~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 327 (386)
| +|.|+|.|.|..|++++++.|.|...+.
T Consensus 80 D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~~ 109 (115)
T d2crya1 80 DFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 109 (115)
T ss_dssp HHHSCEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred cCCeEEEEEEEECCCeEEEEEEEEEECCCC
Confidence 8 7999999999999999999998865444
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=2.1e-14 Score=98.45 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=67.0
Q ss_pred CCeeeeeccc--eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQE--QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~--~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
||.|...+.. ..+.+|+++.|.|.+.+.|.+.+.|++++..+..... ...+... .....+|.|.
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~----------~~~~~~~----~~~~~~L~I~ 68 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE----------DDEKHIF----SDDSSELTIR 68 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC------------CCSSEEE----CTTSCEEEEC
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccc----------cceeEEe----ecCceEEEeC
Confidence 5667665443 3467899999999999999999999998865421100 0011111 1123489999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
+++.+|+|.|+|.+.|..+ ..+..+.|.|..
T Consensus 69 ~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V~~ 99 (100)
T d1qz1a3 69 NVDKNDEAEYVCIAENKAG-EQDASIHLKVFA 99 (100)
T ss_dssp SCCGGGCEEEEEEEEETTE-EEEEEEEEEEEC
T ss_pred CCCcccCEEEEEEEEECCC-EEEEEEEEEEEE
Confidence 9999999999999998755 456777888764
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.51 E-value=2e-14 Score=95.44 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=63.2
Q ss_pred eeeccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
.++++...+.+|++++|.|.+.+ .+...+.|||++..+. .. ..+..|.|.+++.+
T Consensus 4 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~--------------~~----------~~~~~l~i~~v~~~ 59 (88)
T d2fcba2 4 VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKK--------------FS----------RSDPNFSIPQANHS 59 (88)
T ss_dssp EEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEE--------------EE----------SSCCEEEETTCCGG
T ss_pred EEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccc--------------cc----------ccccccccCccCHH
Confidence 34556667889999999999864 4667899999875421 00 11237999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
|+|.|+|.+.|..+...+..+.|.|+.|
T Consensus 60 dsG~Y~C~a~n~~g~~~S~~v~l~V~~P 87 (88)
T d2fcba2 60 HSGDYHCTGNIGYTLYSSKPVTITVQAP 87 (88)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred HCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence 9999999999876666677888888765
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.1e-14 Score=95.88 Aligned_cols=93 Identities=24% Similarity=0.359 Sum_probs=66.9
Q ss_pred eeccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
..+....+.+|+++.|.|.+.+.| .+.|+|+|++..+... ..........+.......|.|.+++.+|
T Consensus 8 ~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~-----------~~~~~~~~~~~~~~~~~~L~I~~v~~~D 76 (104)
T d2aw2a1 8 KRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVK-----------LEDRQTSWKEEKNISFFILHFEPVLPND 76 (104)
T ss_dssp CTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEE-----------CCSSCEEEEECSSCEEEEEEESSCCGGG
T ss_pred ecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccc-----------cceeeeeEEecCCceEEEEEEccccHHH
Confidence 345566799999999999999887 4799999988654210 0111122222333445689999999999
Q ss_pred CeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 108 AGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 108 ~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+|.|+|.|.|..+...+..+.|.|.
T Consensus 77 ~G~Y~C~A~N~~G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 77 NGSYRCSANFQSNLIESHSTTLYVT 101 (104)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEEE
T ss_pred CCeEEEEEEcCCCeEEEEEEEEEEE
Confidence 9999999998876655667777765
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9e-15 Score=106.04 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=70.4
Q ss_pred ecceEee-----CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeec---------------------------C
Q psy8823 224 FAPVITV-----PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTN---------------------------N 271 (386)
Q Consensus 224 ~~p~~~~-----~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~---------------------------~ 271 (386)
+||.+.. .+..+.+.+|+.++|.|.+.|.|.|.+.|++++....... .
T Consensus 3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T d1gxea_ 3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 82 (130)
T ss_dssp BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence 4666532 2345678899999999999999999999999876521110 0
Q ss_pred ceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 272 QHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.++.+. .......|.|.++..+|+|.|+|.|.|..|+.++++.|.|.
T Consensus 83 ~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 83 GRVRVE-----TTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp SSCEEE-----EETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred ceEEEE-----ECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 001110 01135679999999999999999999999999999999885
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.5e-14 Score=94.50 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=65.5
Q ss_pred eeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
.++++...+.+|++++|.|.+.+. +...+.|||++..+.. ......|.|.+++.+
T Consensus 4 ilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~------------------------~~~~~~l~i~~~~~~ 59 (89)
T d1f2qa2 4 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY------------------------WYENHNISITNATVE 59 (89)
T ss_dssp EEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS------------------------CCCSSEEEESSCCGG
T ss_pred EEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccc------------------------ccccceEEEeeeeee
Confidence 445566678999999999999654 5567999998864311 011227999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
|+|.|+|++.|..+...+..+.|.|..+|
T Consensus 60 dsG~Y~C~a~n~~~~~~S~~v~i~V~~~P 88 (89)
T d1f2qa2 60 DSGTYYCTGKVWQLDYESEPLNITVIKAP 88 (89)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred cCcEEEEEEEeCCCCeEeeeEEEEEEeCC
Confidence 99999999998776667888999998876
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.2e-13 Score=95.95 Aligned_cols=96 Identities=20% Similarity=0.240 Sum_probs=68.6
Q ss_pred ceEeeCCC-cccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeee-----ecCceeeeEEEEeecccCC
Q psy8823 226 PVITVPKP-RLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFA-----TADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 226 p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~i~~~~~~d 299 (386)
|.+..+.. ...+..|+++.|.|.+.|.|.|.+.|++++..+.............. .......+.|.|.+++.+|
T Consensus 2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 81 (107)
T d1iray3 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 81 (107)
T ss_dssp CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence 44444333 35677899999999999999999999999987322221111111111 1112235689999999999
Q ss_pred Ce-EEEEEEEcCCCceeeEEEEE
Q psy8823 300 YG-SYICRAANKLGTSEKTVELF 321 (386)
Q Consensus 300 ~G-~Y~C~a~n~~g~~~~~~~l~ 321 (386)
.| .|+|.|.|..|..++.+.|.
T Consensus 82 ~g~~Y~C~A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 82 YKHPFTCFAKNTHGIDAAYIQLI 104 (107)
T ss_dssp GSSCEEEEEECSSCEEEEEEEEE
T ss_pred CCcEEEEEEEeCCCeEEEEEEEE
Confidence 99 59999999999999988875
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.5e-15 Score=105.38 Aligned_cols=96 Identities=17% Similarity=0.257 Sum_probs=67.9
Q ss_pred cceEeeCCCcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEe--eeeecCceeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSIS--HFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
||.+........+.+|+.++|.|.+ .|.|.+.+.|++++.. +......... ..........+.|.|.++..+|+|
T Consensus 2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G 79 (104)
T d1nbqa2 2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV--MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 79 (104)
T ss_dssp CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCC--CCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCC
T ss_pred CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEE--ccCCCceeEEeeCCcEEEeecccceEECCCCcccCc
Confidence 3444333344567789999999998 5899999999999987 3333222111 111112234578999999999999
Q ss_pred EEEEEEEcCCCceeeEEEEEE
Q psy8823 302 SYICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~l~v 322 (386)
.|+|.|.|..|+...+..+.+
T Consensus 80 ~Y~C~a~N~~G~~~~s~~v~v 100 (104)
T d1nbqa2 80 EYSCEARNGYGTPMTSNAVRM 100 (104)
T ss_dssp CEEEEEECSSSCCEECCCBCC
T ss_pred EEEEEEEECCCceEEEEEEEE
Confidence 999999999999877655544
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.50 E-value=1.5e-14 Score=98.02 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=67.6
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++.. +.......... ...++|.|.++..+|+|.|
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~--l~~~~~~~~~~------~~~~~L~i~~v~~~D~G~Y 73 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKS--YNWQEHNAALR------KDEGSLVFLRPQASDEGHY 73 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSB--CCTTTTTEEEC------TTSCCEEESSCCGGGCEEE
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeee--eeeecceeeec------ccceEEEEeccChhcCeEE
Confidence 4667777777888999999999999999977 7999999988 43322211110 1346799999999999999
Q ss_pred EEEEEcCCCcee-eEEEEE
Q psy8823 304 ICRAANKLGTSE-KTVELF 321 (386)
Q Consensus 304 ~C~a~n~~g~~~-~~~~l~ 321 (386)
+|.|.|..|... ..+.|.
T Consensus 74 ~C~a~N~~G~~~s~~v~l~ 92 (94)
T d1biha1 74 QCFAETPAGVASSRVISFR 92 (94)
T ss_dssp EEEEEETTEEEECCCEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE
Confidence 999999999754 344443
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=2.5e-14 Score=98.50 Aligned_cols=98 Identities=13% Similarity=0.295 Sum_probs=70.0
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEe-eeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSIS-HFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
|.+..+.+...+.+|+++.|.|.+.|.|.|.+.|++++.............. .+........++|.|.++..+|.|.|+
T Consensus 2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~ 81 (102)
T d1f97a1 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT 81 (102)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence 4555666777888999999999999999999999986654222111111111 111111224567999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEE
Q psy8823 305 CRAANKLGTSEKTVELFES 323 (386)
Q Consensus 305 C~a~n~~g~~~~~~~l~v~ 323 (386)
|.|.|..|....++.|.|.
T Consensus 82 C~a~n~~g~~~~~~~v~v~ 100 (102)
T d1f97a1 82 CMVSEEGGQNYGEVSIHLT 100 (102)
T ss_dssp EEEEETTSSSEEEEEEEEE
T ss_pred EEEEECCCCEEEEEEEEEE
Confidence 9999999998887777664
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.50 E-value=6.7e-14 Score=93.04 Aligned_cols=83 Identities=13% Similarity=0.258 Sum_probs=63.3
Q ss_pred eeeeccceeeecCCcEEEEEEEee-CCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQY-AQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
+.++++...+.+|++++|.|.+.+ .|...+.|||++..+. . . ..+..|.|.+++.
T Consensus 5 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~--------------~----~------~~~~~l~I~~v~~ 60 (89)
T d1fnla2 5 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK--------------Y----F------HHNSDFHIPKATL 60 (89)
T ss_dssp EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE--------------E----E------EECCCEEESSCCG
T ss_pred EEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccc--------------e----e------ccccccEECccce
Confidence 455667777999999999999874 4566799999875431 0 0 0122689999999
Q ss_pred CCCeEEEEEeEEcccceeeeEEEEEEec
Q psy8823 106 TDAGYYRCQVIIGINNKISAEVDLQVRR 133 (386)
Q Consensus 106 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 133 (386)
+|+|.|+|++.|..+...+..+.|.|.+
T Consensus 61 ~dsG~Y~C~a~n~~~~~~S~~v~itV~E 88 (89)
T d1fnla2 61 KDSGSYFCRGLVGSKNVSSETVNITITQ 88 (89)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred eccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence 9999999999987766667778888764
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.1e-13 Score=92.52 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=65.3
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE-EeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI-YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
....+.+|+.+.|.|.+.|.|.+.+.|++++..+....... .....|.|.+++.+|+|.|+|.|.|..+. .+..+.|.
T Consensus 9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~-~~~~~~v~ 87 (90)
T d1vcaa2 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVE 87 (90)
T ss_dssp SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEE
T ss_pred CcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCE-EEEEEEEE
Confidence 34567789999999999999999999999887665433222 23568999999999999999999999887 66777777
Q ss_pred EE
Q psy8823 222 VE 223 (386)
Q Consensus 222 v~ 223 (386)
|+
T Consensus 88 V~ 89 (90)
T d1vcaa2 88 IY 89 (90)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=4.1e-14 Score=96.07 Aligned_cols=82 Identities=28% Similarity=0.476 Sum_probs=69.0
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE--eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
...+.+|++++|.|.+.+ +++.+.|++++..+........ ....|.|.+++.+|.|.|+|.|.|..+...+..+.|.
T Consensus 12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~ 90 (96)
T d1l6za2 12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 90 (96)
T ss_dssp CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEE
T ss_pred ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEE
Confidence 346889999999999866 5678999999998876655443 3468999999999999999999999887667789999
Q ss_pred EEecc
Q psy8823 222 VEFAP 226 (386)
Q Consensus 222 v~~~p 226 (386)
|.++|
T Consensus 91 V~~~P 95 (96)
T d1l6za2 91 IIFDP 95 (96)
T ss_dssp ECCSC
T ss_pred EEcCC
Confidence 98877
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=9.6e-14 Score=92.42 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=66.7
Q ss_pred CeeecCCCceEEEeCCccEEEEEEee-eeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc
Q psy8823 135 PVISDNSTRSLVVSEGQPVQLECFAG-GHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG 213 (386)
Q Consensus 135 p~~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 213 (386)
|.....+.....+.+|+++.|.|.+. +.|.+.++|++.+..+.. .......+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus 3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~- 80 (90)
T d1gsma1 3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT- 80 (90)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-EEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-
T ss_pred CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-eeccCceeeEEcCccChhhCCcEEEEEEeCCCc-
Confidence 44444445567788999999999884 788999999987765521 122234678999999999999999999998876
Q ss_pred eeeeEEEEEE
Q psy8823 214 TRRNIAVEVE 223 (386)
Q Consensus 214 ~~~~~~l~v~ 223 (386)
...++.|.|+
T Consensus 81 ~~~s~~l~Vy 90 (90)
T d1gsma1 81 FQHTVQLLVY 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 6677777663
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.49 E-value=1.1e-13 Score=96.71 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCeeeee-ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYI-SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~-~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|.|... |.+..+.+|++++|.|.+.+.|.+.|.|++++....... .........................|.|.+
T Consensus 4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 80 (109)
T d2fdbp2 4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY---GPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 80 (109)
T ss_dssp CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC----------------CEEEECCEEEEETTEEEEEEEECS
T ss_pred CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCcee---ccCCceeEeecccceeEEecCCcEEEEECC
Confidence 4666554 678889999999999999999999999999765432110 001000111111122222334566899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
++.+|+|.|+|.|.|..+. ..+.+.|.|
T Consensus 81 ~~~~D~G~Y~C~a~N~~G~-~~~~~~L~V 108 (109)
T d2fdbp2 81 VTFEDAGEYTCLAGNSIGI-SFHSAWLTV 108 (109)
T ss_dssp CCGGGCEEEEEEEECSSCE-EEEEEEEEE
T ss_pred CCHHHCeEEEEEEEECCCE-EEEEEEEEE
Confidence 9999999999999977554 455677765
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.2e-13 Score=93.48 Aligned_cols=99 Identities=21% Similarity=0.364 Sum_probs=70.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.||.|...+....+.+|+.++|.|.+.+.|.+ .+.|++++.......... .+.++.... ......|.|.
T Consensus 1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~L~I~ 70 (101)
T d3b5ha1 1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG--------SESRFFVSS--SQGRSELHIE 70 (101)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTT--------GGGTEEEEE--ETTEEEEEEC
T ss_pred CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccC--------CCceEEEEe--CCCEEEEEEe
Confidence 47889988888889999999999999988766 699999775432111100 112232222 2345589999
Q ss_pred ccC-CCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQ-ETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
++. .+|+|.|+|.|.|..+. .+..+.|.|+
T Consensus 71 ~v~~~~D~G~Y~C~A~N~~G~-~~~~~~L~Vr 101 (101)
T d3b5ha1 71 NLNMEADPGQYRCNGTSSKGS-DQAIITLRVR 101 (101)
T ss_dssp SCCTTTSSEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred ccccccCCEEEEEEEEECCCE-EEEEEEEEEC
Confidence 998 57999999999987654 4666777663
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.48 E-value=4e-14 Score=96.14 Aligned_cols=84 Identities=17% Similarity=0.332 Sum_probs=67.0
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
....+.+|++++|.|.+.+ +++.+.|++++.. +....+..... ....|.|.++..+|.|.|+|.|.|..|
T Consensus 11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~--l~~~~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~N~~g 80 (96)
T d1l6za2 11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQS--LQLTERMTLSQ-------NNSILRIDPIKREDAGEYQCEISNPVS 80 (96)
T ss_dssp SCSEECTTSCEEEEECCCC-SSCEEEEEETTEE--CCCCTTEEEET-------TTTEEEECSCCGGGCEEEEEEEESSSC
T ss_pred CceEEeCCCeEEEEEccCC-CCCCEEEEEeeee--cccccceeccC-------CceEEEEeccchhhceEEEEEEEeCCC
Confidence 3456788999999999865 5679999999988 55555444321 346799999999999999999999999
Q ss_pred cee-eEEEEEEEecC
Q psy8823 313 TSE-KTVELFESIIP 326 (386)
Q Consensus 313 ~~~-~~~~l~v~~~p 326 (386)
... ..+.|.|...|
T Consensus 81 ~~~S~~~~L~V~~~P 95 (96)
T d1l6za2 81 VRRSNSIKLDIIFDP 95 (96)
T ss_dssp CEECCCCEEEECCSC
T ss_pred CeEEEeEEEEEEcCC
Confidence 875 46888887665
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=5.3e-13 Score=93.01 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=70.5
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCC---CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+.|...|.+..+.+|++++|.|.+.+.| .+.|.|++++..... ...+.... ...+ .........++|.|.
T Consensus 5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~----~~~~~~~~-~~~~--~~~~~~~~~~~L~I~ 77 (110)
T d2avga1 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLS----SKVGQHLQ-LHDS--YDRASKVYLFELHIT 77 (110)
T ss_dssp CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCST----TTCSSSEE-EEEE--EETTTTEEEEEEEEE
T ss_pred CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeec----ccCCceeE-eeee--eEEecccCEEEEEEe
Confidence 4566778888899999999999999877 467999997743211 11111111 1111 122233456689999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
+++.+|+|.|+|.+.|..+. .+..+.|.|..+
T Consensus 78 ~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~~ 109 (110)
T d2avga1 78 DAQPAFTGGYRCEVSTKDKF-DCSNFNLTVHEA 109 (110)
T ss_dssp SCCTTCCEEEEEEEEETTEE-EEEEEEEEEESC
T ss_pred ccCHHHCcEEEEEEEECCCe-EEEEEEEEEEec
Confidence 99999999999999987544 477788888653
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.5e-13 Score=93.27 Aligned_cols=95 Identities=18% Similarity=0.106 Sum_probs=65.0
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.|.|. .+.+..+.+|+++.|.|.+.+.|.+.+.|++.+..... ....+.. ........++|.|.++
T Consensus 2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~------------~~~~~~~-~~~~~~~~~~L~I~~v 67 (96)
T d2c9aa1 2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRD------------APLKEIK-VTSSRRFIASFNVVNT 67 (96)
T ss_dssp SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCC------------CCEEEEE-EEETTEEEEEEEECSC
T ss_pred cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeee------------ecCCcee-EEEeecCceEEEECCC
Confidence 47776 57888899999999999999888776555442221100 0001111 1111223458999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+.+|+|.|+|.+.|..+...+....|.|+
T Consensus 68 ~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 68 TKRDAGKYRCMIRTEGGVGISNYAELVVK 96 (96)
T ss_dssp CGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence 99999999999999877766776777763
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.48 E-value=3.6e-14 Score=95.27 Aligned_cols=81 Identities=26% Similarity=0.556 Sum_probs=67.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE----eeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY----RGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.+.|..|. .+..
T Consensus 6 P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~ 84 (91)
T d1tnna_ 6 PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK-QEAE 84 (91)
T ss_dssp CCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB-CCEE
T ss_pred CcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE-EEEE
Confidence 4567889999999999999999999999999988766544322 3568999999999999999999999887 4566
Q ss_pred EEEEEE
Q psy8823 218 IAVEVE 223 (386)
Q Consensus 218 ~~l~v~ 223 (386)
+.|.|+
T Consensus 85 ~~l~V~ 90 (91)
T d1tnna_ 85 FTLTIQ 90 (91)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 676664
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.7e-14 Score=99.02 Aligned_cols=97 Identities=15% Similarity=0.307 Sum_probs=69.2
Q ss_pred eEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEee-eeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 227 VITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISH-FATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 227 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
.+...++...+.+|+++.|.|.+.|.|.|.+.|++++............... .........+.|.|.++..+|+|.|+|
T Consensus 6 ~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 85 (105)
T d1nbqa1 6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTC 85 (105)
T ss_dssp EEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEE
T ss_pred EEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEE
Confidence 3444566778889999999999999999999999987653222111111110 011111234679999999999999999
Q ss_pred EEEcCCCceeeEEEEEEE
Q psy8823 306 RAANKLGTSEKTVELFES 323 (386)
Q Consensus 306 ~a~n~~g~~~~~~~l~v~ 323 (386)
.|.|..|.....+.|.+.
T Consensus 86 ~a~n~~G~~~~~~~v~v~ 103 (105)
T d1nbqa1 86 MVSEEGGNSYGEVKVKLI 103 (105)
T ss_dssp EEEETTSSCEECCEEECC
T ss_pred EEEECCCCEEEEEEEEEE
Confidence 999999999887776654
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=8.5e-14 Score=93.50 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=61.0
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+.|...|.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...++.... +++|.|.+++
T Consensus 2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~------------~~~~~~~~~-----~~~L~I~~~~ 64 (92)
T d1epfa2 2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK------------KDVRFIVLS-----NNYLQIRGIK 64 (92)
T ss_dssp SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGG------------CCTTEEECT-----TSCEEETTCC
T ss_pred cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccc------------cceeeeeee-----eeeEEECCCC
Confidence 56777888999999999999999999999999999988654211 011111111 1269999999
Q ss_pred CCCCeEEEEEeEEcccc
Q psy8823 105 ETDAGYYRCQVIIGINN 121 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~ 121 (386)
.+|+|.|+|.+.|..+.
T Consensus 65 ~~D~G~Y~C~a~n~~~~ 81 (92)
T d1epfa2 65 KTDEGTYRCEGRILARG 81 (92)
T ss_dssp GGGCEEEEEEEEEGGGT
T ss_pred HHhCEEEEEEEEECcCC
Confidence 99999999999986443
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.4e-13 Score=93.46 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=63.3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEe--CCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIK--EDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
+|.+. .+.+..+.+|+++.|.|.+.|.|.|.+.|++ ++.. .......... ........|.|.++..+|+|.
T Consensus 2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~ 74 (96)
T d2c9aa1 2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVR-DAPLKEIKVT-----SSRRFIASFNVVNTTKRDAGK 74 (96)
T ss_dssp SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBC-CCCEEEEEEE-----ETTEEEEEEEECSCCGGGCSE
T ss_pred cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeee-eecCCceeEE-----EeecCceEEEECCCCHHHCeE
Confidence 46665 4677889999999999999999988655432 2222 1111111111 112245679999999999999
Q ss_pred EEEEEEcCCCceeeE-EEEEE
Q psy8823 303 YICRAANKLGTSEKT-VELFE 322 (386)
Q Consensus 303 Y~C~a~n~~g~~~~~-~~l~v 322 (386)
|+|.|.|..|..... +.|.|
T Consensus 75 Y~C~a~N~~G~~~s~~a~L~V 95 (96)
T d2c9aa1 75 YRCMIRTEGGVGISNYAELVV 95 (96)
T ss_dssp EEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEeCCCeEEEEEEEEEE
Confidence 999999999987554 67776
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.47 E-value=7.8e-14 Score=94.34 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.|.|...|.+..+.+|+.+.|.|.+.+.|.+ .+.|++++..+... ........ .+++|.|.+
T Consensus 2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~-------------~~~~~~~~----~~~~L~i~~ 64 (94)
T d1biha1 2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQ-------------EHNAALRK----DEGSLVFLR 64 (94)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTT-------------TTTEEECT----TSCCEEESS
T ss_pred CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeee-------------cceeeecc----cceEEEEec
Confidence 4778888888889999999999999988765 69999988765211 11111111 123799999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
++.+|+|.|+|.+.|..+...+..+.|.
T Consensus 65 v~~~D~G~Y~C~a~N~~G~~~s~~v~l~ 92 (94)
T d1biha1 65 PQASDEGHYQCFAETPAGVASSRVISFR 92 (94)
T ss_dssp CCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred cChhcCeEEEEEEEeCCCEEEEEEEEEE
Confidence 9999999999999998765555555443
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.47 E-value=1.1e-13 Score=91.90 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=60.0
Q ss_pred CcccccCCCcEEEEEEEEecC-CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYP-PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
+...+.+|+.++|.|.+.+++ .+.+.|++++..+... .....|.|.++..+|+|.|+|.|.|..
T Consensus 8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~---------------~~~~~l~i~~v~~~dsG~Y~C~a~n~~ 72 (88)
T d2fcba2 8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS---------------RSDPNFSIPQANHSHSGDYHCTGNIGY 72 (88)
T ss_dssp SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------------SSCCEEEETTCCGGGCEEEEEEEEETT
T ss_pred CCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc---------------ccccccccCccCHHHCCeEEEEEEeCC
Confidence 345577899999999997654 4589999999872211 125579999999999999999999999
Q ss_pred Ccee-eEEEEEEEe
Q psy8823 312 GTSE-KTVELFESI 324 (386)
Q Consensus 312 g~~~-~~~~l~v~~ 324 (386)
|... ..+.|.|..
T Consensus 73 g~~~S~~v~l~V~~ 86 (88)
T d2fcba2 73 TLYSSKPVTITVQA 86 (88)
T ss_dssp EEEECCCEEEEECC
T ss_pred CCEEeeeEEEEEeC
Confidence 8754 567777753
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.2e-13 Score=91.85 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=62.5
Q ss_pred CcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
+...+.+|+.++|.|.+.+.+++ .+.|++++.. +... .....|.|.+++.+|+|.|+|.|.|..
T Consensus 8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~--~~~~-------------~~~~~l~i~~~~~~dsG~Y~C~a~n~~ 72 (89)
T d1f2qa2 8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEA--LKYW-------------YENHNISITNATVEDSGTYYCTGKVWQ 72 (89)
T ss_dssp SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEE--CCSC-------------CCSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeec--cccc-------------cccceEEEeeeeeecCcEEEEEEEeCC
Confidence 34556789999999999776544 8999999987 3221 134579999999999999999999998
Q ss_pred Ccee-eEEEEEEEecC
Q psy8823 312 GTSE-KTVELFESIIP 326 (386)
Q Consensus 312 g~~~-~~~~l~v~~~p 326 (386)
|... ..+.|.|..+|
T Consensus 73 ~~~~S~~v~i~V~~~P 88 (89)
T d1f2qa2 73 LDYESEPLNITVIKAP 88 (89)
T ss_dssp EEEECCCEEEEEECSC
T ss_pred CCeEeeeEEEEEEeCC
Confidence 8653 56888888776
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=5.9e-14 Score=98.13 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=62.3
Q ss_pred ccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeee---cCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 235 LGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFAT---ADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
..+.+|+++.|.|.+. |.|.+.+.|++++..+ ............. ......+.|.|.+++.+|+|.|+|.|.|.
T Consensus 12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~ 89 (110)
T d1f97a2 12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISM--LTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 89 (110)
T ss_dssp SEEETTSCEEEEEECSCCBSCCEEEEEETTEES--BC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECS
T ss_pred CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEe--cCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEEC
Confidence 3567899999999984 8999999999999873 2222211111110 11123557999999999999999999999
Q ss_pred CCceee--EEEEEEEec
Q psy8823 311 LGTSEK--TVELFESII 325 (386)
Q Consensus 311 ~g~~~~--~~~l~v~~~ 325 (386)
.|+... .+.|.|.+.
T Consensus 90 ~G~~~~s~~v~l~V~~l 106 (110)
T d1f97a2 90 YGTAMRSEAAHMDAVEL 106 (110)
T ss_dssp SSCCEECCCEEEEEESS
T ss_pred CCcEEEEEEEEEEEEec
Confidence 998765 566666543
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.45 E-value=1.9e-13 Score=90.83 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=60.1
Q ss_pred CCcccccCCCcEEEEEEEEecC-CCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYP-PPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
++...+.+|+.++|.|.+.+.+ .+.+.|++|+...... .....|.|.+++.+|+|.|+|.|.|.
T Consensus 9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~---------------~~~~~l~I~~v~~~dsG~Y~C~a~n~ 73 (89)
T d1fnla2 9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF---------------HHNSDFHIPKATLKDSGSYFCRGLVG 73 (89)
T ss_dssp CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE---------------EECCCEEESSCCGGGCEEEEEEEEET
T ss_pred CCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee---------------ccccccEECccceeccceEEEEEEeC
Confidence 3445577999999999987554 4489999999872211 12557899999999999999999999
Q ss_pred CCcee-eEEEEEEEe
Q psy8823 311 LGTSE-KTVELFESI 324 (386)
Q Consensus 311 ~g~~~-~~~~l~v~~ 324 (386)
.|... ..+.|.|+.
T Consensus 74 ~~~~~S~~v~itV~E 88 (89)
T d1fnla2 74 SKNVSSETVNITITQ 88 (89)
T ss_dssp TEEEECCCEEEEEEC
T ss_pred CCCeEEeeEEEEEEe
Confidence 98754 567777754
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.6e-14 Score=92.56 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=62.2
Q ss_pred EEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEEEEec
Q psy8823 146 VVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVEVEFA 225 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~ 225 (386)
.+.+|++++|.|.+.|.|.|.+.|++++..+. .....|.|.++..+|+|.|+|.|.|..+. ....+.|.|...
T Consensus 10 ~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~------~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~-~~~~~~v~V~~~ 82 (84)
T d2nxyb2 10 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAF 82 (84)
T ss_dssp CEETTCCEEEEEECCTTCCCEEEEECTTCCEE------EESSEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECEECC
T ss_pred EEECCCeEEEEEEeEcCCchheEEEeecccce------eeeeeeeeeecccccccEEEEEEEeCCCE-EEEEEEEEEEec
Confidence 47899999999999999999999999776542 34567999999999999999999999886 566777777654
Q ss_pred c
Q psy8823 226 P 226 (386)
Q Consensus 226 p 226 (386)
|
T Consensus 83 ~ 83 (84)
T d2nxyb2 83 Q 83 (84)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.45 E-value=1.5e-13 Score=93.29 Aligned_cols=79 Identities=25% Similarity=0.502 Sum_probs=64.9
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce---E--EeeeEEEECCCCCCCCeEEEEEEecCCCCceeee
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS---I--YRGSILKIPQITKEDRGTYYCVAENGVGKGTRRN 217 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 217 (386)
....+.+|+++.|.|.+.|.|.|.+.|+++|..+...... . ....+|.|.++..+|+|.|+|.+.|..|. .+..
T Consensus 13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~ 91 (97)
T d3dara1 13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHT 91 (97)
T ss_dssp CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEE
T ss_pred ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCE-EEEE
Confidence 3456789999999999999999999999999988654321 1 13468999999999999999999999987 5666
Q ss_pred EEEEE
Q psy8823 218 IAVEV 222 (386)
Q Consensus 218 ~~l~v 222 (386)
+.|.|
T Consensus 92 ~~l~V 96 (97)
T d3dara1 92 YHLDV 96 (97)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=7.9e-13 Score=92.66 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=69.4
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC---CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
|...|.+..+.+|++++|.|.+.+.| .+.|.|+|++..... ...+..... . ...........+.|.|.++
T Consensus 3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~----~~~~~~~~~-~--~~~~~~~~~~~~~L~I~~v 75 (113)
T d2dava1 3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLA----SKAGKHLQL-K--ETFERHSRVYTFEMQIIKA 75 (113)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHH----HHTTSSEEE-E--EEEETTTTEEEEEEEECSC
T ss_pred EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccc----cccceeeee-c--cceeeEeecCEEEEEEccC
Confidence 34456778899999999999999877 468999998754311 111111111 1 1112233345568999999
Q ss_pred CCCCCeEEEEEeEEcccceeeeEEEEEEecCC
Q psy8823 104 QETDAGYYRCQVIIGINNKISAEVDLQVRRPP 135 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 135 (386)
+.+|+|.|+|.+.|..+ ..+..+.|.|..++
T Consensus 76 ~~~D~G~Y~C~a~N~~G-~~~~~~~L~V~~~~ 106 (113)
T d2dava1 76 KDNFAGNYRCEVTYKDK-FDSCSFDLEVHEST 106 (113)
T ss_dssp CTTSCEEEEEEEECSSC-EEEECCEEEEECCC
T ss_pred CHHHCeEEEEEEEeCCC-EEEEEEEEEEEcCC
Confidence 99999999999997654 45778888887665
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.5e-13 Score=92.18 Aligned_cols=90 Identities=17% Similarity=0.252 Sum_probs=69.7
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEe-cCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCC
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEA-YPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
.++.+.+.+....+.+|+.++|.|.+.| +|.+ ++.|++++.. +... ........+.|.|..+..+|+
T Consensus 3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~--l~~~--------~~~~~~~~s~l~i~~~~~dd~ 72 (103)
T d1iama1 3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE--LKRE--------PAVGEPAEVTTTVLVRRDHHG 72 (103)
T ss_dssp CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEE--EEEE--------ECCTTTEEEEEEEECCSSCSS
T ss_pred CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccc--cccc--------ccccccceEEEEEeeehhHCC
Confidence 3556666666677889999999999986 5655 6889999987 3221 111223567899999999999
Q ss_pred eEEEEEEEcCCCceeeEEEEEEE
Q psy8823 301 GSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
|.|+|.|+|..|....++.+.+.
T Consensus 73 g~ytC~A~n~~g~~~~~~~~~~s 95 (103)
T d1iama1 73 AQFSCRTELDLRPQGLELFENTS 95 (103)
T ss_dssp CEEEEEEEEECGGGTSCEEEEEC
T ss_pred CEEEEEEEeCCCCccCeEeeeEc
Confidence 99999999999998888887774
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.4e-13 Score=92.49 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=68.2
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.|.|...+.+..+.+|+++.|.|.+.+.|.+.++|++++..+... . ..........|.|.++
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-------------~-----~~~~~~~~~~L~i~~~ 63 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-------------V-----MKSGGLPSLGLTLANV 63 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE-------------E-----CCCCCSSEEEEEEESC
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeee-------------e-----eeeeeccceeEEEccc
Confidence 588889999999999999999999999999999999988654211 0 1112234558999999
Q ss_pred CCCCCe-EEEEEeEEcccceeeeEEEEEE
Q psy8823 104 QETDAG-YYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 104 ~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
+.+|+| .|+|.+.|..+.. +..+.|.|
T Consensus 64 ~~~d~G~~Y~C~a~N~~G~~-~~s~~l~V 91 (92)
T d2ifga1 64 TSDLNRKNVTCWAENDVGRA-EVSVQVNV 91 (92)
T ss_dssp CSTTTTCCEEECCEETTEEC-CEEECCCC
T ss_pred cccccceEEEEEEEcCCCEE-EEEEEEEE
Confidence 999999 6999999876543 44555443
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.2e-14 Score=93.11 Aligned_cols=73 Identities=26% Similarity=0.434 Sum_probs=61.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 221 (386)
+....+.+|+.+.|.|.+.|.|.|.++|++++..+.... .+.+++.+|+|.|.|.|.|..|. .+..+.|.
T Consensus 11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~---------~~~~v~~~d~G~Y~C~A~N~~G~-~~~~~~l~ 80 (84)
T d2oz4a3 11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCRARSTQGE-VTREVTVN 80 (84)
T ss_dssp CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT---------SCEECCGGGCEEEEEEEEETTEE-EEEEEEEE
T ss_pred CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee---------eeeccccCCCCEEEEEEEcCCCE-EEEEEEEE
Confidence 456789999999999999999999999999998775433 24467889999999999999987 56778888
Q ss_pred EEe
Q psy8823 222 VEF 224 (386)
Q Consensus 222 v~~ 224 (386)
|..
T Consensus 81 V~~ 83 (84)
T d2oz4a3 81 VLS 83 (84)
T ss_dssp EEC
T ss_pred EEC
Confidence 754
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.6e-13 Score=99.22 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=72.7
Q ss_pred ccCCeeee-----eccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCC---------------ceeEEe
Q psy8823 22 QRTPTISY-----ISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG---------------SSLIIR 81 (386)
Q Consensus 22 ~~~p~i~~-----~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~---------------~~~~~~ 81 (386)
+.||.|.. .+....+.+|+.++|.|.+.|.|.+.+.|++++..+.......... ......
T Consensus 2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T d1gxea_ 2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET 81 (130)
T ss_dssp CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC
T ss_pred CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc
Confidence 45666643 2456679999999999999999999999999886654322111000 000001
Q ss_pred ccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 82 DSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 82 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
..++.+ ......++|.|.+++.+|+|.|+|.|.|..+. .++.+.|.|.
T Consensus 82 ~~r~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 129 (130)
T d1gxea_ 82 EGRVRV--ETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKVI 129 (130)
T ss_dssp SSSCEE--EEETTEEEEECSCCCTTTCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred CceEEE--EECCCEEEEEECcCChhcCEEEEEEEEECCCE-EEEEEEEEEE
Confidence 112222 22345678999999999999999999987554 5677777775
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.42 E-value=3.5e-14 Score=97.99 Aligned_cols=80 Identities=16% Similarity=0.318 Sum_probs=62.3
Q ss_pred CcccccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 233 PRLGQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
....+.+|+.+.|.|.+ .|.|.+.+.|++++.........+.... ...+.|.|.++..+|+|.|+|.|.|..
T Consensus 12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~ 84 (105)
T d1cs6a2 12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-------QTTGNLYIAKTEASDLGNYSCFATSHI 84 (105)
T ss_dssp CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC-------TTTCCEEESSCCGGGCEEEEEEEEEEE
T ss_pred CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeee-------cCCCEEeecccccccCcEEEEEEEECC
Confidence 44678899999999997 6899999999999877433333222211 135579999999999999999999999
Q ss_pred CceeeEEE
Q psy8823 312 GTSEKTVE 319 (386)
Q Consensus 312 g~~~~~~~ 319 (386)
|..+.++.
T Consensus 85 g~~~~~v~ 92 (105)
T d1cs6a2 85 DFITKSVF 92 (105)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 98877643
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1e-13 Score=92.73 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=60.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
.|.+...+....+.+|+++.|.|.+.|.|++ +++|+|++.. +....+... ..+.+|.|.+++.+|+|.|
T Consensus 6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~--l~~~~~~~~--------~~~~~L~I~~v~~~D~G~Y 75 (93)
T d1n26a1 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPA--AGSHPSRWA--------GMGRRLLLRSVQLHDSGNY 75 (93)
T ss_dssp CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSS--SSCCCEEEE--------EESSEEEECSCCGGGCEEE
T ss_pred CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccc--ccceeeEEe--------cCCCEEEECCCChhcCEEE
Confidence 4666667777788889999999999887764 8999999887 433333221 1356799999999999999
Q ss_pred EEEEEcCCC
Q psy8823 304 ICRAANKLG 312 (386)
Q Consensus 304 ~C~a~n~~g 312 (386)
+|.|.|..+
T Consensus 76 ~C~a~n~~~ 84 (93)
T d1n26a1 76 SCYRAGRPA 84 (93)
T ss_dssp EEESSSSCS
T ss_pred EEEECCccc
Confidence 999987653
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=7.7e-13 Score=90.87 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=65.4
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
|.+...+....+.+|++++|.|.+.+.|.+.+.|++++........ ...........+... .+++|.|.+++
T Consensus 2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~tL~I~~v~ 73 (102)
T d1f97a1 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVC--YNSQITAPYADRVTF------SSSGITFSSVT 73 (102)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEE--ETTEECGGGTTTEEE------ETTEEEESCCC
T ss_pred CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeec--cccccccceeeEEEe------cCCEEEEeECC
Confidence 4566666777799999999999999989999999997765422111 000000000111111 22379999999
Q ss_pred CCCCeEEEEEeEEcccce-eeeEEEEEE
Q psy8823 105 ETDAGYYRCQVIIGINNK-ISAEVDLQV 131 (386)
Q Consensus 105 ~~d~G~Y~C~~~~~~~~~-~~~~~~l~v 131 (386)
.+|+|.|+|.+.|..+.. .+..+.|.|
T Consensus 74 ~~D~G~Y~C~a~n~~g~~~~~~~v~v~V 101 (102)
T d1f97a1 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTV 101 (102)
T ss_dssp GGGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred ccCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence 999999999999876543 344555554
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.1e-13 Score=91.25 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=58.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCC-CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQD-YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+|.+.+.+....+.+|++++|.|.+.+.+. +.|+|+|++..+.. .. +.... .+.+|.|.
T Consensus 5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~-------~~-------~~~~~-----~~~~L~I~ 65 (93)
T d1n26a1 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS-------HP-------SRWAG-----MGRRLLLR 65 (93)
T ss_dssp CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC-------CC-------EEEEE-----ESSEEEEC
T ss_pred CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccc-------ee-------eEEec-----CCCEEEEC
Confidence 5688888888888999999999999987654 58999999876521 11 11111 11279999
Q ss_pred ccCCCCCeEEEEEeEE
Q psy8823 102 DIQETDAGYYRCQVII 117 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~ 117 (386)
+++.+|+|.|+|.+.+
T Consensus 66 ~v~~~D~G~Y~C~a~n 81 (93)
T d1n26a1 66 SVQLHDSGNYSCYRAG 81 (93)
T ss_dssp SCCGGGCEEEEEESSS
T ss_pred CCChhcCEEEEEEECC
Confidence 9999999999998864
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=9e-13 Score=87.94 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=62.0
Q ss_pred eCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+..+..+.+|+++.|.|.+ +.|.+.+.|++++..+.......+..... .....|.|.++..+|+|.|+|.|.|
T Consensus 5 ~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n 78 (90)
T d1x44a1 5 KQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVE-----GKKHILIIEGATKADAAEYSVMTTG 78 (90)
T ss_dssp BCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEE-----TTEEEEEEEEECTTTCSEEEEEETT
T ss_pred cCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEe-----CCccEEEECccccccCEEEEEEEec
Confidence 34566778899999999999 57888999999998843333333433221 1356799999999999999999977
Q ss_pred CCCceeeEEEEEEE
Q psy8823 310 KLGTSEKTVELFES 323 (386)
Q Consensus 310 ~~g~~~~~~~l~v~ 323 (386)
. +.+..|.|.
T Consensus 79 ~----~~~a~l~V~ 88 (90)
T d1x44a1 79 G----QSSAKLSVD 88 (90)
T ss_dssp E----EEEEEEEEE
T ss_pred c----eEEEEEEEE
Confidence 4 445556554
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.39 E-value=4.6e-13 Score=90.96 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=66.3
Q ss_pred CCeeeeeccceeeecC---CcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 24 TPTISYISQEQIKDIG---GTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G---~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
+|.|...|.+..+.+| ++++|.|.+.+.|.+.++|++++..+... .. .++... ....|.|
T Consensus 4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~-----~~-------~~~~~~-----~~~~l~i 66 (97)
T d1cs6a1 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMG-----PD-------SRYRLV-----AGDLVIS 66 (97)
T ss_dssp EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCS-----TT-------SSEEEE-----TTEEEEE
T ss_pred CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCC-----CC-------ceEEee-----eeeEEEE
Confidence 4778888888887766 78999999999999999999988665211 11 111111 1236888
Q ss_pred cccCCCCCeEEEEEeEEcccceeeeEEEEE
Q psy8823 101 KDIQETDAGYYRCQVIIGINNKISAEVDLQ 130 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 130 (386)
..++.+|+|.|+|.+.|..+...+..+.|.
T Consensus 67 ~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 67 NPVKAKDAGSYQCVATNARGTVVSREASLR 96 (97)
T ss_dssp SCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred ecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence 999999999999999998776556566654
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.8e-13 Score=92.26 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=66.5
Q ss_pred cccccCCCcEEEEEEEE-ecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 234 RLGQALQYDMDLECHVE-AYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~-g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.....+|+.+.|.|.+. +.|.+++.|++++............+. ..+..|.|.++..+|+|.|+|.|.|..|
T Consensus 11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~g 83 (101)
T d1iray1 11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIH-------QHKEKLWFVPAKVEDSGHYYCVVRNSSY 83 (101)
T ss_dssp CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEE-------EETTEEEETTCCGGGCEEEEEEEEETTE
T ss_pred EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEe-------ccCCEEEeccceecCCEEEEEEEECCCC
Confidence 34566799999999885 678889999999876333332222211 1356899999999999999999999999
Q ss_pred ceeeEEEEEEEec
Q psy8823 313 TSEKTVELFESII 325 (386)
Q Consensus 313 ~~~~~~~l~v~~~ 325 (386)
..+.++.|.|...
T Consensus 84 ~~~~~~~L~V~~~ 96 (101)
T d1iray1 84 CLRIKISAKFVEN 96 (101)
T ss_dssp EEEEEEEEEEECC
T ss_pred eEEEEEEEEEEeC
Confidence 9999999998753
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=8.9e-13 Score=87.97 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=59.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
|+..+.+..+.+|+++.|.|.+. .|.+.+.|++++..+... ...++... ...+.++|.|.+++.+
T Consensus 3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~------------~~~~~~~~--~~~~~~~L~I~~v~~~ 67 (90)
T d1x44a1 3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPG------------PKSRYRIR--VEGKKHILIIEGATKA 67 (90)
T ss_dssp CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCS------------TTCSEEEE--EETTEEEEEEEEECTT
T ss_pred EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCC------------CCccEEEE--EeCCccEEEECccccc
Confidence 34456778899999999999995 677889999988654211 01112222 2234568999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
|+|.|+|.+.| ......|.|.
T Consensus 68 D~G~Y~C~a~n-----~~~~a~l~V~ 88 (90)
T d1x44a1 68 DAAEYSVMTTG-----GQSSAKLSVD 88 (90)
T ss_dssp TCSEEEEEETT-----EEEEEEEEEE
T ss_pred cCEEEEEEEec-----ceEEEEEEEE
Confidence 99999999853 2344556654
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.38 E-value=7.8e-13 Score=86.80 Aligned_cols=75 Identities=11% Similarity=0.224 Sum_probs=59.0
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCe-eEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPA-IVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+...+....+.+|++++|.|.+.|.|.+. +.|++++.. +.. ....|.|.+++.+|+|.|
T Consensus 5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~l~i~~~~~~d~G~Y 67 (84)
T d1fnla1 5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESL--ISS---------------QASSYFIDAATVNDSGEY 67 (84)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEE--EES---------------SCSEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeecee--eee---------------cceeeEecCCcccCCEEE
Confidence 45566667778889999999999999999884 667777765 221 245699999999999999
Q ss_pred EEEEEcCCCceee
Q psy8823 304 ICRAANKLGTSEK 316 (386)
Q Consensus 304 ~C~a~n~~g~~~~ 316 (386)
+|.|.|..++...
T Consensus 68 ~C~a~~s~~S~~v 80 (84)
T d1fnla1 68 RCQTNLSTLSDPV 80 (84)
T ss_dssp EEECSSSCCCCCE
T ss_pred EEEccCCCccccE
Confidence 9999987665443
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=4.4e-13 Score=93.55 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=64.5
Q ss_pred CeeeeeccceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
|.+.....+..+.+|++++|.|.+. +.|.+.++|++++..+...... ............ ......|.|.++
T Consensus 3 P~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~l~I~~v 74 (110)
T d1f97a2 3 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK------KTRAFMNSSFTI--DPKSGDLIFDPV 74 (110)
T ss_dssp CCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----------CBSCSSSCEEE--CTTTCCEEESSC
T ss_pred CccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCce------eEEeecCceEEE--eecccceEECCC
Confidence 3333333344688999999999985 6888999999988655221100 000000111111 112337999999
Q ss_pred CCCCCeEEEEEeEEcccce-eeeEEEEEEecC
Q psy8823 104 QETDAGYYRCQVIIGINNK-ISAEVDLQVRRP 134 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~ 134 (386)
+.+|+|.|+|.+.|..+.. .+..+.|.|..-
T Consensus 75 ~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~~l 106 (110)
T d1f97a2 75 TAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 106 (110)
T ss_dssp CGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred CccCCEEEEEEEEECCCcEEEEEEEEEEEEec
Confidence 9999999999999876643 355677777643
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.6e-13 Score=92.66 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=61.5
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.+.+...++...+.+|++++|.|.+.+.|.+.+.|++++......... ..........+... .+.+|.|.++
T Consensus 4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~L~I~~v 75 (105)
T d1nbqa1 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCY--NNKITASYEDRVTF------LPTGITFKSV 75 (105)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEE--TTEECTTTTTTCEE------ETTEEECSCC
T ss_pred ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeec--cceeeccccceeee------cCceEEEecc
Confidence 455666667777999999999999999999999999987654221110 00000000111111 1237999999
Q ss_pred CCCCCeEEEEEeEEcccce
Q psy8823 104 QETDAGYYRCQVIIGINNK 122 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~~~ 122 (386)
+.+|+|.|+|.+.|..+..
T Consensus 76 ~~~D~G~Y~C~a~n~~G~~ 94 (105)
T d1nbqa1 76 TREDTGTYTCMVSEEGGNS 94 (105)
T ss_dssp CTTSCSEEEEEEEETTSSC
T ss_pred cccceeeEEEEEEECCCCE
Confidence 9999999999999876544
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.5e-12 Score=89.14 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=64.4
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE---------eeeEEEECCCCCCCCeEEEEEEecCCCCceeeeEE
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY---------RGSILKIPQITKEDRGTYYCVAENGVGKGTRRNIA 219 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 219 (386)
.+....+.|.+.|.|.|.+.|++++..+........ ....|.|.+++.+|+|.|+|.|.|..|. .+..+.
T Consensus 15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~ 93 (103)
T d1wwbx_ 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQIS 93 (103)
T ss_dssp CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEE
T ss_pred cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCE-EEEEEE
Confidence 567788999999999999999999999876543321 1347999999999999999999999998 577788
Q ss_pred EEEEecce
Q psy8823 220 VEVEFAPV 227 (386)
Q Consensus 220 l~v~~~p~ 227 (386)
|.|..+|.
T Consensus 94 v~V~~~P~ 101 (103)
T d1wwbx_ 94 AHFMGWPG 101 (103)
T ss_dssp ECCSCCCC
T ss_pred EEEEeCCC
Confidence 87766663
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=9.7e-13 Score=90.73 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=67.7
Q ss_pred EecCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEE--------eeeEEEECCCCCCCCeEE
Q psy8823 131 VRRPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIY--------RGSILKIPQITKEDRGTY 202 (386)
Q Consensus 131 v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y 202 (386)
|+.||.+..... ...+....|.|.+.|.|.|.+.|++++..+........ ....|.|.+++.+|+|.|
T Consensus 2 V~~PP~i~~~~~----~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 77 (105)
T d1wwca_ 2 VYYPPRVVSLEE----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNY 77 (105)
T ss_dssp CCCCCCCCCCCC----CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred EEcCCeeEEeCC----CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEE
Confidence 556776543221 12344566888999999999999999998866543321 235799999999999999
Q ss_pred EEEEecCCCCceeeeEEEEEEecc
Q psy8823 203 YCVAENGVGKGTRRNIAVEVEFAP 226 (386)
Q Consensus 203 ~C~~~~~~~~~~~~~~~l~v~~~p 226 (386)
+|.|.|..|. .+..+.|.|..+|
T Consensus 78 ~C~a~N~~G~-~~~~~~v~V~~~P 100 (105)
T d1wwca_ 78 TLIAKNPLGT-ANQTINGHFLKEP 100 (105)
T ss_dssp EEEEEETTEE-EEEEEEECCSCCC
T ss_pred EEEEEcCCCE-EEEEEEEEEEeCC
Confidence 9999999887 5677777776655
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.37 E-value=6.6e-13 Score=87.44 Aligned_cols=76 Identities=12% Similarity=0.285 Sum_probs=60.3
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
|.+.+.+....+.+|+.++|.|.+.+.|.+ .+.|++++.. +.. ....|.|.+++.+|+|.|+
T Consensus 5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~--~~~---------------~~~~l~i~~v~~~dsG~Y~ 67 (85)
T d2fcba1 5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNL--IPT---------------HTQPSYRFKANNNDSGEYT 67 (85)
T ss_dssp CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEE--CTT---------------CCSSEEEEECCGGGCEEEE
T ss_pred CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccc--ccc---------------cccceEEeeccccCCcEEE
Confidence 446666667788899999999999998877 6889999877 322 2456899999999999999
Q ss_pred EEEEcCCCceeeEE
Q psy8823 305 CRAANKLGTSEKTV 318 (386)
Q Consensus 305 C~a~n~~g~~~~~~ 318 (386)
|.|.|..++....+
T Consensus 68 C~a~ns~~S~~v~l 81 (85)
T d2fcba1 68 CQTGQTSLSDPVHL 81 (85)
T ss_dssp EECTTSBCCCCEEE
T ss_pred EECCCCcccccEEE
Confidence 99998866554433
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.6e-13 Score=89.43 Aligned_cols=78 Identities=9% Similarity=0.207 Sum_probs=59.4
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
..+.+|+++.|.|.+.| |+|.+.|++++..+... ..++.. ..++.|.|.++..+|+|.|+|.|.|..|..
T Consensus 7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~-~~~~~~--------~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~ 76 (92)
T d1olza1 7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE-SPKYGL--------MGRKNLLIFNLSEGDSGVYQCLSEERVKNK 76 (92)
T ss_dssp EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCC-SSSBCC--------TTTTCEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred eeEeCCCEEEEEEEeec-cCCceeeecCcccceee-eeeeec--------ceeeEEEECCCCHHHCcEEEEEEEEcCCCE
Confidence 45678999999999988 67899999999883222 111111 134579999999999999999999999987
Q ss_pred eeEEEEEE
Q psy8823 315 EKTVELFE 322 (386)
Q Consensus 315 ~~~~~l~v 322 (386)
+.+..|.+
T Consensus 77 ~~~~~l~~ 84 (92)
T d1olza1 77 TVFQVVAK 84 (92)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 76655544
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=5.1e-13 Score=87.27 Aligned_cols=79 Identities=14% Similarity=0.285 Sum_probs=58.4
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+|.+.+.+....+.+|++++|.|.+.+.|.+ .+.|++++.. +.. ....|.|.+++.+|+|.|
T Consensus 1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~l~i~~v~~~d~G~Y 63 (82)
T d1f2qa1 1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSL--SEE---------------TNSSLNIVNAKFEDSGEY 63 (82)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEE--CSC---------------CSSEEEECSCCGGGCEEE
T ss_pred CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeee--eec---------------ccceeEECCCChhhCCcE
Confidence 3566666777778999999999999999888 4667777765 221 245699999999999999
Q ss_pred EEEEEcCCCceeeEEEEEE
Q psy8823 304 ICRAANKLGTSEKTVELFE 322 (386)
Q Consensus 304 ~C~a~n~~g~~~~~~~l~v 322 (386)
+|.|.|..++.. +.|.|
T Consensus 64 ~C~a~~s~~S~~--v~l~V 80 (82)
T d1f2qa1 64 KCQHQQVNESEP--VYLEV 80 (82)
T ss_dssp EEECTTSSCCCC--EEEEE
T ss_pred EEEecCCCCccc--EEEEE
Confidence 999998766554 44444
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=5.1e-13 Score=91.88 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=64.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEec----cceeeecCCCcceEEEEEc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRD----SRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~ 101 (386)
+++++.+..+.+|++|.|.|.........+.|+|+........+. ........... +|..+. .+++|.|.
T Consensus 2 vti~~~P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~-----~ngSL~I~ 76 (107)
T d1l6za1 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY-----SNGSLLFQ 76 (107)
T ss_dssp CEEEEESSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC-----TTSCEEEC
T ss_pred cEEEEcCCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc-----ccccEEEc
Confidence 344444556789999999998554455679999976544332222 11111112222 344443 24589999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|.+.+......+..+.|.|+
T Consensus 77 ~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~Vy 107 (107)
T d1l6za1 77 MITMKDMGVYTLDMTDENYRRTQATVRFHVH 107 (107)
T ss_dssp SCCGGGCEEEEEEEEETTEEECCCCEEECCC
T ss_pred CCCchhCEEEEEEEEECCCCEEEEEEEEEEC
Confidence 9999999999999987655555666666653
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.34 E-value=9.7e-13 Score=86.63 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=60.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCC-cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDY-PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+|.+.+.|+...+.+|++|+|.|.+.+.+.. .+.|++++..+.. .+..|.|.
T Consensus 3 pkp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~--------------------------~~~~l~i~ 56 (85)
T d2fcba1 3 PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT--------------------------HTQPSYRF 56 (85)
T ss_dssp CBCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT--------------------------CCSSEEEE
T ss_pred CCCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc--------------------------cccceEEe
Confidence 45778888888889999999999999877654 5888887754310 11268999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
+++.+|+|.|+|++.+. ..+..+.|.|.
T Consensus 57 ~v~~~dsG~Y~C~a~ns---~~S~~v~l~V~ 84 (85)
T d2fcba1 57 KANNNDSGEYTCQTGQT---SLSDPVHLTVL 84 (85)
T ss_dssp ECCGGGCEEEEEECTTS---BCCCCEEEEEE
T ss_pred eccccCCcEEEEECCCC---cccccEEEEEE
Confidence 99999999999998642 34556666664
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.33 E-value=1.4e-12 Score=85.64 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=58.8
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCc-EEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.+|.+.+.|....+.+|++|+|.|.+.+.+.+. +.|++++..+. . ...+|.|.
T Consensus 4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~--------------~------------~~~~l~i~ 57 (84)
T d1fnla1 4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------------S------------QASSYFID 57 (84)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE--------------S------------SCSEEEES
T ss_pred CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee--------------e------------cceeeEec
Confidence 467888889888899999999999998877765 55666553220 0 11279999
Q ss_pred ccCCCCCeEEEEEeEEcccceeeeEEEEEE
Q psy8823 102 DIQETDAGYYRCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 131 (386)
+++.+|+|.|+|++.+ ...+..+.|.|
T Consensus 58 ~~~~~d~G~Y~C~a~~---s~~S~~v~L~V 84 (84)
T d1fnla1 58 AATVNDSGEYRCQTNL---STLSDPVQLEV 84 (84)
T ss_dssp SCCGGGCEEEEEECSS---SCCCCCEEEEE
T ss_pred CCcccCCEEEEEEccC---CCccccEEEEC
Confidence 9999999999999863 23345555554
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4.9e-13 Score=92.29 Aligned_cols=100 Identities=21% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEe-eCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQ-YAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
||.+.....+..+.+|++++|.|.+. +.|.+.+.|++++..+......... ....... .......|.|.+
T Consensus 2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~-----~~~~~~~----~~~~~~~l~I~~ 72 (104)
T d1nbqa2 2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRA-----FSNSSYV----LNPTTGELVFDP 72 (104)
T ss_dssp CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSS-----CTTCCCC----CCTTTCCEEESS
T ss_pred CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEE-----eeCCcEE----EeecccceEECC
Confidence 44555445556688999999999984 7888999999998765332111000 0011111 112234799999
Q ss_pred cCCCCCeEEEEEeEEcccce-eeeEEEEEEe
Q psy8823 103 IQETDAGYYRCQVIIGINNK-ISAEVDLQVR 132 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~ 132 (386)
++.+|+|.|+|.+.|..+.. .+..+.|.|.
T Consensus 73 v~~~D~G~Y~C~a~N~~G~~~~s~~v~v~v~ 103 (104)
T d1nbqa2 73 LSASDTGEYSCEARNGYGTPMTSNAVRMEAV 103 (104)
T ss_dssp CCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred CCcccCcEEEEEEEECCCceEEEEEEEEEEE
Confidence 99999999999999876643 3455555553
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=7.2e-12 Score=85.47 Aligned_cols=92 Identities=12% Similarity=0.220 Sum_probs=65.5
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC-CCC--cEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA-QDY--PVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
.|+.+.+.+.+..+.+|++++|.|.+.+. |.+ .+.|++++..+... ..........|.
T Consensus 3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~-------------------~~~~~~~~s~l~ 63 (103)
T d1iama1 3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKRE-------------------PAVGEPAEVTTT 63 (103)
T ss_dssp CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEE-------------------ECCTTTEEEEEE
T ss_pred CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccc-------------------ccccccceEEEE
Confidence 47788888888889999999999999864 444 47899987654210 111223455899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
|...+.+|+|.|+|+|.|..+.. ...+.+.+..+
T Consensus 64 i~~~~~dd~g~ytC~A~n~~g~~-~~~~~~~~s~p 97 (103)
T d1iama1 64 VLVRRDHHGAQFSCRTELDLRPQ-GLELFENTSAP 97 (103)
T ss_dssp EECCSSCSSCEEEEEEEEECGGG-TSCEEEEECCC
T ss_pred EeeehhHCCCEEEEEEEeCCCCc-cCeEeeeEcCC
Confidence 99999999999999999876543 23334444433
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=99.31 E-value=1.7e-11 Score=85.45 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=70.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+...|....+.+|++|+|.|.........+.||+.........+.............++....+.....++|.|.+++.+
T Consensus 3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~ 82 (114)
T d2cdea1 3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS 82 (114)
T ss_dssp EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence 45567778899999999999987656667999997765444433333333344566788888888888999999999999
Q ss_pred CCeEEEEEeEEc
Q psy8823 107 DAGYYRCQVIIG 118 (386)
Q Consensus 107 d~G~Y~C~~~~~ 118 (386)
|+|.|.|.+...
T Consensus 83 Dsg~Y~Ca~~~~ 94 (114)
T d2cdea1 83 DSASYICVVSDR 94 (114)
T ss_dssp GCSEEEEEEECS
T ss_pred hCcccceeeecC
Confidence 999999998753
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.7e-12 Score=87.24 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=55.6
Q ss_pred cccCCCcEEEEE------EEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 236 GQALQYDMDLEC------HVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 236 ~~~~g~~~~l~C------~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+..|....|.| .+.++|.|.+.|++|+.. +........ ..+..|.|.++..+|+|.|+|.|.|
T Consensus 10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~--l~~~~~~~~--------~~~~~L~I~~v~~~D~G~Y~C~a~n 79 (103)
T d1iray2 10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP--LLLDNIHFS--------GVKDRLIVMNVAEKHRGNYTCHASY 79 (103)
T ss_dssp EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEE--CCCCSSSEE--------EETTEEEESSCCGGGCEEEEEEEEE
T ss_pred EEecCCCEEEEcCCccccccCCCCCCEEEEEECCcc--ccCCCcEEE--------ecCCEEEEcccccccCcEEEEEEEE
Confidence 456789999999 667999999999999998 433322211 1345799999999999999999999
Q ss_pred CCCceee
Q psy8823 310 KLGTSEK 316 (386)
Q Consensus 310 ~~g~~~~ 316 (386)
..|....
T Consensus 80 ~~~g~~~ 86 (103)
T d1iray2 80 TYLGKQY 86 (103)
T ss_dssp EETTEEE
T ss_pred CcCCEEE
Confidence 8875543
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=7e-12 Score=84.22 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCeeeeeccc-eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQE-QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~-~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|.|.....+ ..+.+|+++.|.|.+. .|.+.+.|++++..+.. .+.++.... ..+.+.|.|.+
T Consensus 5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~-------------~~~~~~~~~--~~~~~~L~I~~ 68 (94)
T d1pd6a_ 5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQM-------------SGSKYIFES--IGAKRTLTISQ 68 (94)
T ss_dssp TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECC-------------CSSSSEEEE--ETTEEEEEECS
T ss_pred CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCcccee-------------eeeeEeeec--cCCeEEeecCC
Confidence 4555555544 4589999999999985 57788999999876521 112222222 23456899999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
++.+|+|.|+|.+.| ......|.|.
T Consensus 69 ~~~~D~G~Y~c~a~n-----~~~s~~l~V~ 93 (94)
T d1pd6a_ 69 CSLADDAAYQCVVGG-----EKCSTELFVK 93 (94)
T ss_dssp CSSSSCEEEEEEETT-----EEECCEEEEE
T ss_pred CCceecEEEEEEEee-----EEEEEEEEEE
Confidence 999999999999843 2334455553
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.1e-12 Score=85.68 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=57.1
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCc-EEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYP-VIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+|.|.+.|....+.+|++|+|.|.+.+.+.+. +.|++++..+. ..+..|.|.+
T Consensus 1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~l~i~~ 54 (82)
T d1f2qa1 1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE--------------------------ETNSSLNIVN 54 (82)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS--------------------------CCSSEEEECS
T ss_pred CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeee--------------------------cccceeEECC
Confidence 47888988888899999999999998877665 56677654321 0112799999
Q ss_pred cCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 103 IQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
++.+|+|.|+|++.+ ...+..+.|.|.
T Consensus 55 v~~~d~G~Y~C~a~~---s~~S~~v~l~V~ 81 (82)
T d1f2qa1 55 AKFEDSGEYKCQHQQ---VNESEPVYLEVF 81 (82)
T ss_dssp CCGGGCEEEEEECTT---SSCCCCEEEEEE
T ss_pred CChhhCCcEEEEecC---CCCcccEEEEEE
Confidence 999999999999863 333556666663
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.28 E-value=3.8e-13 Score=89.45 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=64.0
Q ss_pred eCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEc
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
.+..+..+.+|+++.|.|.+ +.|.|.+.|+++|.. +....++.+.... ....|.|.++..+|+|.|+|.|.|
T Consensus 6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~--i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~n 77 (89)
T d1tiua_ 6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQP--LTASPDCEIIEDG-----KKHILILHNCQLGMTGEVSFQAAN 77 (89)
T ss_dssp BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCC--CCSSSSCEEEECS-----SCEEEECCSCCSCCCSEECCBCSS
T ss_pred cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeee--cccceeEEEEeec-----eeEEEEEcCCChhcCEEEEEEECc
Confidence 35567788899999999998 678899999999998 6666666554321 356899999999999999999977
Q ss_pred CCCceeeEEEEEEE
Q psy8823 310 KLGTSEKTVELFES 323 (386)
Q Consensus 310 ~~g~~~~~~~l~v~ 323 (386)
.. .++.|.|.
T Consensus 78 ~~----~sa~l~V~ 87 (89)
T d1tiua_ 78 AK----SAANLKVK 87 (89)
T ss_dssp CB----CCEEEEEE
T ss_pred eE----EEEEEEEE
Confidence 54 44556554
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=4.7e-12 Score=84.43 Aligned_cols=68 Identities=21% Similarity=0.404 Sum_probs=56.8
Q ss_pred eEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE--EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI--YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
...+.+|++++|.|.+.+ +++.+.|++++..+....... ..++.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~ 75 (92)
T d1olza1 6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKN 75 (92)
T ss_dssp EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCC
Confidence 457899999999999988 678999999998876554332 23567999999999999999999997765
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.6e-11 Score=82.40 Aligned_cols=74 Identities=20% Similarity=0.394 Sum_probs=56.8
Q ss_pred CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCce-EE----eeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGS-IY----RGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 135 p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
|.+.........+.+|+.+.|.|.+. .|++.+.|++++..+...... .. ....|.|.++..+|+|.|+|.+.|.
T Consensus 6 ~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~ 84 (94)
T d1pd6a_ 6 TAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE 84 (94)
T ss_dssp SSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred CcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE
Confidence 33333334456788999999999985 488899999999998765432 11 2457999999999999999999763
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2e-11 Score=84.41 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=64.7
Q ss_pred CeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceE----------------EeeeEEEECCCCCCC
Q psy8823 135 PVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSI----------------YRGSILKIPQITKED 198 (386)
Q Consensus 135 p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d 198 (386)
|.+.......+.+..|+++.|.|.+.+.|.+.+.|++++..+....... .....|.|.+++.+|
T Consensus 2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 81 (107)
T d1iray3 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 81 (107)
T ss_dssp CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence 3343334455667889999999999999999999999998775433211 113579999999999
Q ss_pred Ce-EEEEEEecCCCCceeeeEEEE
Q psy8823 199 RG-TYYCVAENGVGKGTRRNIAVE 221 (386)
Q Consensus 199 ~g-~y~C~~~~~~~~~~~~~~~l~ 221 (386)
.| .|+|.|.|..|. ....+.|.
T Consensus 82 ~g~~Y~C~A~N~~G~-~~~~i~L~ 104 (107)
T d1iray3 82 YKHPFTCFAKNTHGI-DAAYIQLI 104 (107)
T ss_dssp GSSCEEEEEECSSCE-EEEEEEEE
T ss_pred CCcEEEEEEEeCCCe-EEEEEEEE
Confidence 99 599999999997 44555543
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=2.7e-11 Score=86.60 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=66.4
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC---CCcEEEEecCCccccccccccCCcee-----EEeccceeee-cCCCcceEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ---DYPVIWMKVDRNKVTEPLPISTGSSL-----IIRDSRFAIR-YDTASSTYT 97 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~ 97 (386)
+..+..+..+.+|++|+|+|.+.... ...+.|++.+..... ..+..+... .....+.... .....++++
T Consensus 5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~s 82 (126)
T d1pkoa_ 5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVV--HLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVA 82 (126)
T ss_dssp EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEE--EEEETTEECGGGSCSTTTTSEEEECTTGGGTEEE
T ss_pred EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceE--EEEEeccccccccccccceeEEEeeccccCCeEE
Confidence 44444456788999999999986332 344899997644211 111111000 0011122222 223456789
Q ss_pred EEEcccCCCCCeEEEEEeEEcccceeeeEEEEEEecCCee
Q psy8823 98 LLVKDIQETDAGYYRCQVIIGINNKISAEVDLQVRRPPVI 137 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 137 (386)
|.|.+++.+|+|.|+|.+.+.. ...+..+.|.|.+|+..
T Consensus 83 L~I~~v~~~D~G~Y~C~v~~~~-~~~~~~v~L~V~~P~~~ 121 (126)
T d1pkoa_ 83 LRIQNVRFSDEGGYTCFFRDHS-YQEEAAVELKVEDPFYW 121 (126)
T ss_dssp EEESSCCGGGCEEEEEEEEETT-EEEEEEEEEEEECTTTT
T ss_pred EEEEEEchhHCeEEEEEEEECC-CEEEEEEEEEEeCCCEE
Confidence 9999999999999999998653 44577788999876544
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.26 E-value=5.2e-12 Score=86.81 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=58.7
Q ss_pred CCCceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCCCc--eE--EeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 140 NSTRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPTGG--SI--YRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~--~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.....+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+..... .. ...+.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 9 ~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~ 86 (105)
T d1cs6a2 9 EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF 86 (105)
T ss_dssp SCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETT
T ss_pred CCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCC
Confidence 33456789999999999997 7899999999999876543221 11 13557999999999999999999998776
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.25 E-value=2.3e-12 Score=89.22 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=59.8
Q ss_pred cccCCCcEEEEEEE-EecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe---EEEEEEEcCC
Q psy8823 236 GQALQYDMDLECHV-EAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG---SYICRAANKL 311 (386)
Q Consensus 236 ~~~~g~~~~l~C~~-~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~a~n~~ 311 (386)
.+.+|+.+.|.|.+ .|.|.|.+.|++++.. +............ ......++|.|.+++.+|+| .|.|.|.|..
T Consensus 13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~--~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~ 89 (111)
T d1biha2 13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSG--ADPNADVTDFDRR-ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAA 89 (111)
T ss_dssp CCBTTEEEEECCCCCEEESCCEEEEEEEETT--SCGGGCCCCCCTT-EEECTTSCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred cccCCCeEEEEEEcccCCCCCEEEEEeCCcc--ccccccceeeeee-eccccccccEEeeeEeeccCCceEEEEEEEeCC
Confidence 46789999999996 8999999999998766 2221111100000 00013567999999988776 7999999999
Q ss_pred CceeeEEEEEEE
Q psy8823 312 GTSEKTVELFES 323 (386)
Q Consensus 312 g~~~~~~~l~v~ 323 (386)
|.....+.+.+.
T Consensus 90 g~~~~~~~~~~i 101 (111)
T d1biha2 90 VDEEVVLVEYEI 101 (111)
T ss_dssp CSSCEEEEEEEE
T ss_pred CCceEEEEEEEe
Confidence 998877655543
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=7.6e-12 Score=86.25 Aligned_cols=79 Identities=20% Similarity=0.336 Sum_probs=61.8
Q ss_pred EeCCccEE---EEEEeeeeCCCeEEEEEcCeeeCCCCceEE-----------eeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 147 VSEGQPVQ---LECFAGGHPTPRISWRRENNAILPTGGSIY-----------RGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 147 ~~~g~~v~---l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+..|.... +.|.+.|.|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.+.|..|.
T Consensus 9 ~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~ 88 (107)
T d1he7a_ 9 LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 88 (107)
T ss_dssp CCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE
T ss_pred ECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCE
Confidence 44454444 555889999999999999998765543221 1356999999999999999999999997
Q ss_pred ceeeeEEEEEEecc
Q psy8823 213 GTRRNIAVEVEFAP 226 (386)
Q Consensus 213 ~~~~~~~l~v~~~p 226 (386)
....+.|.|..+|
T Consensus 89 -~~~~i~v~v~~~P 101 (107)
T d1he7a_ 89 -ASASIMAAFMDNP 101 (107)
T ss_dssp -EEEEEEECCCSCT
T ss_pred -EEEEEEEEEEcCC
Confidence 6778888887776
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4.3e-12 Score=87.22 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=60.3
Q ss_pred cccccCCCcEEEEEEEEe-cCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 234 RLGQALQYDMDLECHVEA-YPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g-~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
...+.+|+.++|.|.+.| +|.| ++.|++++.. +....... .........+.|.+.....+|+|.|+|+|.|.
T Consensus 11 p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~--i~~~~~~~---~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~ 85 (106)
T d1zxqa1 11 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNET--LHYETFGK---AAPAPQEATATFNSTADREDGHRNFSCLAVLD 85 (106)
T ss_dssp SSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEE--EEEEECCS---STTCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred CCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEE--eeecccce---EeecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence 345678999999999986 4434 8999999988 33221111 11112234567888888889999999999999
Q ss_pred CCceeeEEEEEEE
Q psy8823 311 LGTSEKTVELFES 323 (386)
Q Consensus 311 ~g~~~~~~~l~v~ 323 (386)
.|.....+.+.+.
T Consensus 86 ~~~~~~~~~~~~s 98 (106)
T d1zxqa1 86 LMSRGGNIFHKHS 98 (106)
T ss_dssp CGGGTCCEEEEEC
T ss_pred CCCCCCeeEeccc
Confidence 9877776666653
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.2e-11 Score=83.26 Aligned_cols=94 Identities=23% Similarity=0.326 Sum_probs=62.6
Q ss_pred ceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 33 EQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
.+.+.+|++|+|+|...... ...+.|+|.........+....+.......+++....+...+.++|.|.+++.+|+|.
T Consensus 5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~ 84 (108)
T d1hkfa_ 5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH 84 (108)
T ss_dssp EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence 34578999999999876332 2346799855443222222223322333456676666777888999999999999999
Q ss_pred EEEEeEEcccceeeeE
Q psy8823 111 YRCQVIIGINNKISAE 126 (386)
Q Consensus 111 Y~C~~~~~~~~~~~~~ 126 (386)
|.|.+...........
T Consensus 85 Y~C~v~~~~~~~~~~~ 100 (108)
T d1hkfa_ 85 YWCRIYRPSDNSVSKS 100 (108)
T ss_dssp EEEEEECTTTCCEEEE
T ss_pred EEEEEecCCCCcEEEe
Confidence 9999875544333333
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.5e-11 Score=84.44 Aligned_cols=80 Identities=10% Similarity=0.178 Sum_probs=55.1
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC---CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA---QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+.+.+.+..+.+|+.++|.|.+.+. +.+.++|++++..+.. +...............|.|...
T Consensus 5 v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~--------------~~~~~~~~~~~~~~s~l~~~~~ 70 (106)
T d1zxqa1 5 VILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY--------------ETFGKAAPAPQEATATFNSTAD 70 (106)
T ss_dssp CEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEE--------------EECCSSTTCTTCEEEEEEEECC
T ss_pred CEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeee--------------cccceEeecccceeEEEEEeee
Confidence 4455666678899999999999863 3456999998865421 1111122222334457888888
Q ss_pred CCCCCeEEEEEeEEccc
Q psy8823 104 QETDAGYYRCQVIIGIN 120 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~~ 120 (386)
+.+|.|.|+|+|.|..+
T Consensus 71 ~~d~g~~ytC~A~n~~~ 87 (106)
T d1zxqa1 71 REDGHRNFSCLAVLDLM 87 (106)
T ss_dssp GGGGGCEEEEEEEEECG
T ss_pred hhcCCcEEEEEEEecCC
Confidence 88888999999998754
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=99.21 E-value=6.9e-11 Score=82.12 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=66.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|...+.....+.|||.........+............+++..........++|.|.+++.+
T Consensus 3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 82 (113)
T d2bnqd1 3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG 82 (113)
T ss_dssp EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence 55667777899999999999987655566899996644332222222222223445667666666778899999999999
Q ss_pred CCeEEEEEeEEc
Q psy8823 107 DAGYYRCQVIIG 118 (386)
Q Consensus 107 d~G~Y~C~~~~~ 118 (386)
|+|.|.|.+...
T Consensus 83 Dsg~YyCa~~~~ 94 (113)
T d2bnqd1 83 DSATYLCAVRPT 94 (113)
T ss_dssp GCEEEEEEEEES
T ss_pred CCcEEeEeEecC
Confidence 999999988753
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.6e-11 Score=82.31 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=64.6
Q ss_pred CceEEEeCCccEEEEEEe-eeeCCCeEEEEEcCeeeCCC----CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCceee
Q psy8823 142 TRSLVVSEGQPVQLECFA-GGHPTPRISWRRENNAILPT----GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKGTRR 216 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 216 (386)
+..+...+|+.+.|.|.+ .+.|.+.+.|++++..+... ......+..|.|.+++.+|+|.|+|.+.|..+. ...
T Consensus 9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~ 87 (101)
T d1iray1 9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC-LRI 87 (101)
T ss_dssp CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEE-EEE
T ss_pred CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCe-EEE
Confidence 345667889999999988 46788999999998655322 123345678999999999999999999998887 556
Q ss_pred eEEEEEEe
Q psy8823 217 NIAVEVEF 224 (386)
Q Consensus 217 ~~~l~v~~ 224 (386)
.+.|.|..
T Consensus 88 ~~~L~V~~ 95 (101)
T d1iray1 88 KISAKFVE 95 (101)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 77777754
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.20 E-value=3.6e-12 Score=84.56 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=56.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
|...+.+..+.+|+++.|.|.+. .|.+.+.|++++..+. .++++.+..+ ...++|.|.+++.+
T Consensus 4 i~~~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~--------------~~~~~~~~~~--~~~~~L~I~~~~~~ 66 (89)
T d1tiua_ 4 VEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLT--------------ASPDCEIIED--GKKHILILHNCQLG 66 (89)
T ss_dssp CSBCCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCCC--------------SSSSCEEEEC--SSCEEEECCSCCSC
T ss_pred EEcCCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeecc--------------cceeEEEEee--ceeEEEEEcCCChh
Confidence 34456778899999999999985 6778899999987652 2233444333 24558999999999
Q ss_pred CCeEEEEEeEE
Q psy8823 107 DAGYYRCQVII 117 (386)
Q Consensus 107 d~G~Y~C~~~~ 117 (386)
|+|.|+|.+.+
T Consensus 67 D~G~Y~c~a~n 77 (89)
T d1tiua_ 67 MTGEVSFQAAN 77 (89)
T ss_dssp CCSEECCBCSS
T ss_pred cCEEEEEEECc
Confidence 99999999754
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=2e-10 Score=79.69 Aligned_cols=91 Identities=22% Similarity=0.398 Sum_probs=66.0
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCcccccc-ccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEP-LPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
++..|....+.+|++|+|.|.+.+. ....+.||+......... +....+......+.++..........++|.|.+++
T Consensus 2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 81 (114)
T d3bp5a1 2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR 81 (114)
T ss_dssp EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence 5667788889999999999998643 334588999654433222 22233333334566788777777778899999999
Q ss_pred CCCCeEEEEEeEE
Q psy8823 105 ETDAGYYRCQVII 117 (386)
Q Consensus 105 ~~d~G~Y~C~~~~ 117 (386)
.+|+|.|.|.+..
T Consensus 82 ~~Dsg~YyCa~~~ 94 (114)
T d3bp5a1 82 RNDSGIYLCGAIS 94 (114)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cCCCeEEEEEEEe
Confidence 9999999998764
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=3.8e-11 Score=84.22 Aligned_cols=104 Identities=18% Similarity=0.240 Sum_probs=66.2
Q ss_pred eccceeeecCCcEEEEEEEeeC---CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYA---QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
.|+...+.+|++|+|.|..... ....+.|+|.........+....+.......+++.+..+...++++|.|.+++.+
T Consensus 5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~ 84 (116)
T d1xeda_ 5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD 84 (116)
T ss_dssp CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence 3556678899999999987532 1244789986544322222222222222234566667777788899999999999
Q ss_pred CCeEEEEEeEEcccceeeeEEEEEEecC
Q psy8823 107 DAGYYRCQVIIGINNKISAEVDLQVRRP 134 (386)
Q Consensus 107 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 134 (386)
|+|.|.|.+.... ......+.|.|.+.
T Consensus 85 DsG~Y~C~v~~~~-~~~~~~v~L~V~~~ 111 (116)
T d1xeda_ 85 DSGRYKCGLGINS-RGLSFDVSLEVLEH 111 (116)
T ss_dssp GCEEEEEEESCGG-GCCEEEEEEEEECC
T ss_pred CCEEEEEEEEcCC-CCceEeEEEEEECC
Confidence 9999999886432 22344577777654
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=99.17 E-value=9.2e-11 Score=81.65 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=63.4
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..+....+.+|++|+|.|.........+.|||.........+.............++....+.....+.|.|.+++.+
T Consensus 4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1lp9e1 4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS 83 (115)
T ss_dssp EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence 44455666689999999999988666667999997654333222222222222234566666666667778999999999
Q ss_pred CCeEEEEEeEE
Q psy8823 107 DAGYYRCQVII 117 (386)
Q Consensus 107 d~G~Y~C~~~~ 117 (386)
|+|.|.|.+..
T Consensus 84 Dsg~YyCa~~~ 94 (115)
T d1lp9e1 84 DSALYYCALFL 94 (115)
T ss_dssp GCEEEEEEEEE
T ss_pred cCccceEEEEc
Confidence 99999998764
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=7.7e-11 Score=79.92 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=56.7
Q ss_pred EEEeCCccEEEEE------EeeeeCCCeEEEEEcCeeeCCCCce-EEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 145 LVVSEGQPVQLEC------FAGGHPTPRISWRRENNAILPTGGS-IYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 145 ~~~~~g~~v~l~C------~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
..+..|....|.| .+.+.|.|.+.|++++..+...... ...+..|.|.++..+|+|.|+|.|.|..+.
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g 83 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG 83 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence 4578899999999 5578899999999999998765443 345678999999999999999999986654
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=9e-12 Score=83.72 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=57.1
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYY 111 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 111 (386)
++..+..|++|+|.|... .|...|.|++++..+.. ...... ...+++..+......+++|.|.+++.+|+|.|
T Consensus 3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~----~~~~~~--~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y 75 (93)
T d1ccza1 3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAE----LENSEF--RAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEY 75 (93)
T ss_dssp EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEE----EETTEE--EECGGGTTSEEECTTTCCEEECSCCGGGCEEE
T ss_pred cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccce----eeecce--eeCCCccceEEEcCCeeEEEEEecChhhCEEE
Confidence 345688999999999865 57778999998754421 111111 11222222222223456899999999999999
Q ss_pred EEEeEEcccceeeeEEEEEE
Q psy8823 112 RCQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 112 ~C~~~~~~~~~~~~~~~l~v 131 (386)
+|++.+. ..+..+.|.|
T Consensus 76 ~c~~~n~---~~t~~~~l~V 92 (93)
T d1ccza1 76 EMESPNI---TDTMKFFLYV 92 (93)
T ss_dssp EEECTTC---CSCEEEEEEE
T ss_pred EEEEECC---CcEEEEEEEE
Confidence 9998543 2344455554
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=6.4e-11 Score=79.82 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=60.8
Q ss_pred ceeeecCCcEEEEEEEee-C-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 33 EQIKDIGGTVELKCSVQY-A-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~-~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
......|++|+|.|.... . ....|.|++++..+. ....+......+.+..... +++|.|.+++.+|+|.
T Consensus 4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~----~~~~~~~~~~~~~~~~~~~-----ngSL~I~nl~~~DsG~ 74 (98)
T d1hnga1 4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVA----EFKRKMKPFLKSGAFEILA-----NGDLKIKNLTRDDSGT 74 (98)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEE----EEETTSCCEESSTTEEECT-----TSCEEESSCCGGGCEE
T ss_pred EEEEecCCCEEEECCCCCCccchheeeeecccccee----EEccCCccccCCCeEEECC-----CccEEEeCCCHHHCEE
Confidence 345778999999996432 2 224599999775432 1222222233344444332 3489999999999999
Q ss_pred EEEEeEEcccce-eeeEEEEEEec
Q psy8823 111 YRCQVIIGINNK-ISAEVDLQVRR 133 (386)
Q Consensus 111 Y~C~~~~~~~~~-~~~~~~l~v~~ 133 (386)
|+|.+.+..+.. .++.+.|.|++
T Consensus 75 Y~c~v~~~~g~~~~~~~~~L~V~E 98 (98)
T d1hnga1 75 YNVTVYSTNGTRILNKALDLRILE 98 (98)
T ss_dssp EEEEEEETTCCEEEEEEEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEEEEEEEEC
Confidence 999998765543 46778888763
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=1.2e-10 Score=82.09 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=63.9
Q ss_pred eeccceeeecCCcEEEEEEEeeC----CCCcEEEEecCCcccccccc--ccCCceeEEe----ccceeeecCCCcceEEE
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYA----QDYPVIWMKVDRNKVTEPLP--ISTGSSLIIR----DSRFAIRYDTASSTYTL 98 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~----~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~L 98 (386)
..|....+..|++|+|+|.+... ....+.|++........... ...+...... .+|+.+..+...++++|
T Consensus 4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 83 (119)
T d1neua_ 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI 83 (119)
T ss_dssp ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence 34566779999999999997632 23368998855432211111 1122221111 23445545556677899
Q ss_pred EEcccCCCCCeEEEEEeEEccc-ceeeeEEEEEEe
Q psy8823 99 LVKDIQETDAGYYRCQVIIGIN-NKISAEVDLQVR 132 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~ 132 (386)
.|.+++.+|+|.|.|.+.+... ......+.|.|.
T Consensus 84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 9999999999999999986432 223445666664
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=5.6e-10 Score=79.52 Aligned_cols=96 Identities=16% Similarity=0.237 Sum_probs=63.3
Q ss_pred CCCcccccCCCcEEEEEEEEecCC---CeeEEEeCCeeeee---ecCce--------e--EEeeeeecCceeeeEEEEee
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPP---PAIVWIKEDTQQVL---TNNQH--------Y--SISHFATADEFTDTTIRVIT 294 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~---~~~~W~~~~~~~~~---~~~~~--------~--~~~~~~~~~~~~~~~L~i~~ 294 (386)
+...+.+..|++++|.|.+..... ..+.|++.+..... ..... + +...........+.+|.|.+
T Consensus 8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 87 (126)
T d1pkoa_ 8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN 87 (126)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence 344467789999999999864332 26899987543111 11000 0 00011111122367899999
Q ss_pred cccCCCeEEEEEEEcCCCceeeEEEEEEEecC
Q psy8823 295 IEKRQYGSYICRAANKLGTSEKTVELFESIIP 326 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 326 (386)
++.+|+|.|+|.+.+..+..++.+.|.|..++
T Consensus 88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~ 119 (126)
T d1pkoa_ 88 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 119 (126)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred EchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence 99999999999999999999999999997644
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=99.11 E-value=4.4e-10 Score=78.24 Aligned_cols=91 Identities=15% Similarity=0.317 Sum_probs=63.7
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++..|....+.+|++|+|.|..... ....+.||+.........+....+..... ..+|+....+....+++|.|.+
T Consensus 3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (116)
T d1tvda_ 3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP 82 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence 5556777789999999999998643 34568999855443333233222222222 2347777666677788999999
Q ss_pred cCCCCCeEEEEEeEE
Q psy8823 103 IQETDAGYYRCQVII 117 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~ 117 (386)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsg~YyCa~~~ 97 (116)
T d1tvda_ 83 VRTEDSATYYCAFTL 97 (116)
T ss_dssp CCGGGCEEEEEEEEC
T ss_pred ccccccccceeeEec
Confidence 999999999998764
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=99.11 E-value=1.9e-10 Score=78.51 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=58.1
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+..|....+.+|++|+|.|...+.....+.||+.........+.............++... ....++.|.|.+++.+|
T Consensus 5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~--~~~~~~~L~I~~~~~~D 82 (107)
T d1ospl1 5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGS--DSGKDYTLSITSLQTED 82 (107)
T ss_dssp ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--CSSSSEEEEESSCCGGG
T ss_pred EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCcccccccee--cCCCeEEeEEccccccc
Confidence 3446667789999999999987555556999997655433322222221111123455443 34556899999999999
Q ss_pred CeEEEEEeE
Q psy8823 108 AGYYRCQVI 116 (386)
Q Consensus 108 ~G~Y~C~~~ 116 (386)
+|.|.|.+.
T Consensus 83 sa~YyCa~~ 91 (107)
T d1ospl1 83 VATYFCQQY 91 (107)
T ss_dssp CSEEEEEEC
T ss_pred CCcEEEeec
Confidence 999999764
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=99.10 E-value=2.6e-10 Score=78.01 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=59.0
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.||+.........+...........+.++.... ...+++|.|.+++.+
T Consensus 4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~ 81 (107)
T d1j1pl_ 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVETE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc--cCCEEEEEEcccCcC
Confidence 445566777999999999999765555569999977654333222222221111234454433 345789999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|...
T Consensus 82 Dsa~YyCa~~ 91 (107)
T d1j1pl_ 82 DFGMYFCQQA 91 (107)
T ss_dssp GCEEEEEEEC
T ss_pred CCEEEEEEcC
Confidence 9999999654
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.5e-12 Score=90.44 Aligned_cols=93 Identities=28% Similarity=0.472 Sum_probs=69.8
Q ss_pred EEEecCCeeecCCCceEEEeCCccEEEEEEeeeeC-CCeEEEEEcCeeeCCCCce--EE--------eeeEEEECCCCCC
Q psy8823 129 LQVRRPPVISDNSTRSLVVSEGQPVQLECFAGGHP-TPRISWRRENNAILPTGGS--IY--------RGSILKIPQITKE 197 (386)
Q Consensus 129 l~v~~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~--~~--------~~~~l~i~~~~~~ 197 (386)
|.|..||.+... ....+.+|+.+.|.|.+.+.+ .+.+.|++++..+...... .. ....|.|.++...
T Consensus 2 L~V~~Pp~i~~~--~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~ 79 (115)
T d2crya1 2 LTVNGPPIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA 79 (115)
T ss_dssp CCCCSSCCEEEE--CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred eEEecCCEEecC--CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence 567778876542 344577899999999998854 5579999999887654311 11 1246999999999
Q ss_pred C-CeEEEEEEecCCCCceeeeEEEEEEe
Q psy8823 198 D-RGTYYCVAENGVGKGTRRNIAVEVEF 224 (386)
Q Consensus 198 d-~g~y~C~~~~~~~~~~~~~~~l~v~~ 224 (386)
| +|.|+|.|.|..|. .+..+.|.|+.
T Consensus 80 D~~G~Y~C~A~N~~G~-~~~~~~L~V~~ 106 (115)
T d2crya1 80 DFQTIYNCTAWNSFGS-DTEIIRLKEQG 106 (115)
T ss_dssp HHHSCEEEEEECSSCE-EEEEECCCCSC
T ss_pred cCCeEEEEEEEECCCe-EEEEEEEEEEC
Confidence 9 69999999999997 66777777654
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=99.09 E-value=2.9e-10 Score=77.66 Aligned_cols=88 Identities=16% Similarity=0.295 Sum_probs=59.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.||+.........+.............++... ....++.|.|.+++.+
T Consensus 4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~~ 81 (107)
T d1tjgl1 4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGS--GSGTEFTLTISTLRPE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEe--ccCCEEEEEeccceeC
Confidence 45567777899999999999987555667999997665433333322222111112334333 3456789999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|...
T Consensus 82 DsA~YyCa~~ 91 (107)
T d1tjgl1 82 DFATYYCQQL 91 (107)
T ss_dssp GCSEEEEEEC
T ss_pred cCceEEEEEC
Confidence 9999999654
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.6e-11 Score=81.18 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=51.4
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEe----ccceeeec-CCCcceEEEEEcccCCCCC
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR----DSRFAIRY-DTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~L~i~~~~~~d~ 108 (386)
..+.+|++|+|+|.........+.|++........ ......... .+++.... ....++++|.|.+++.+|+
T Consensus 4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~Ds 79 (97)
T d2nxyb1 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILG----NQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS 79 (97)
T ss_dssp EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEE----EETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGC
T ss_pred EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeee----ecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHC
Confidence 34789999999999876666779999866543111 111111111 22332222 2244567899999999999
Q ss_pred eEEEEEeE
Q psy8823 109 GYYRCQVI 116 (386)
Q Consensus 109 G~Y~C~~~ 116 (386)
|.|.|.+.
T Consensus 80 G~Y~C~v~ 87 (97)
T d2nxyb1 80 DTYICEVE 87 (97)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEe
Confidence 99999984
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=9.5e-11 Score=78.55 Aligned_cols=84 Identities=8% Similarity=0.110 Sum_probs=57.2
Q ss_pred ccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeec---CceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 235 LGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATA---DEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.....|++|+|.|.+ +.|.+.+.|++++..+................ ....++.|.|.+++.+|+|.|+|.|.|..
T Consensus 5 v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~ 83 (93)
T d1ccza1 5 IYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT 83 (93)
T ss_dssp EEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred EEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence 456789999999986 56777999999987743322222211110000 01135689999999999999999999988
Q ss_pred CceeeEEE
Q psy8823 312 GTSEKTVE 319 (386)
Q Consensus 312 g~~~~~~~ 319 (386)
++.+.++.
T Consensus 84 ~t~~~~l~ 91 (93)
T d1ccza1 84 DTMKFFLY 91 (93)
T ss_dssp SCEEEEEE
T ss_pred cEEEEEEE
Confidence 76654443
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=99.08 E-value=3.6e-10 Score=78.10 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=64.4
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+...|....+.+|++|+|.|.........+.||+.........+............+++....+.....++|.|.+++.+
T Consensus 3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 82 (111)
T d1bd2d1 3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG 82 (111)
T ss_dssp EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence 44456667789999999999977555556889997655433322222222223345677777777778999999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|.+.
T Consensus 83 Dsa~YyCa~~ 92 (111)
T d1bd2d1 83 DSAVYFCAAM 92 (111)
T ss_dssp GCEEEEEEEE
T ss_pred ccEEEEeecc
Confidence 9999999765
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=99.08 E-value=3.2e-10 Score=77.09 Aligned_cols=88 Identities=16% Similarity=0.252 Sum_probs=56.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.|||.........+.............++... ....+++|.|.+++.+
T Consensus 4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~~ 81 (107)
T d1c5cl1 4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGS--RSGSDYSLTISSLESE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEE--EETTEEEEEESSCCGG
T ss_pred EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEec--ccCCEEEEEEhhhccc
Confidence 33446667789999999999987655566999996654432222211111111112233332 2345779999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|.+.
T Consensus 82 Dsa~YyCa~~ 91 (107)
T d1c5cl1 82 DFADYYCLQY 91 (107)
T ss_dssp GCSEEEEEEC
T ss_pred CCeEEEEecC
Confidence 9999999754
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=9.8e-10 Score=77.10 Aligned_cols=92 Identities=17% Similarity=0.396 Sum_probs=60.4
Q ss_pred CeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccc---ccc-ccCC-ceeEEe-----ccceeeecCCCcc
Q psy8823 25 PTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTE---PLP-ISTG-SSLIIR-----DSRFAIRYDTASS 94 (386)
Q Consensus 25 p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~---~~~-~~~~-~~~~~~-----~~~~~~~~~~~~~ 94 (386)
|.+...|....+.+|++|+|.|...+.....+.||+........ .+. .... ...... ..++.. ......
T Consensus 2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~ 80 (122)
T d1nezg_ 2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSA-MRDTNN 80 (122)
T ss_dssp CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEE-EEETTT
T ss_pred CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEE-ECCCCC
Confidence 67888999999999999999999887667779999954332111 111 1111 111111 112222 122345
Q ss_pred eEEEEEcccCCCCCeEEEEEeEE
Q psy8823 95 TYTLLVKDIQETDAGYYRCQVII 117 (386)
Q Consensus 95 ~~~L~i~~~~~~d~G~Y~C~~~~ 117 (386)
+++|.|.+++.+|+|.|.|.+..
T Consensus 81 ~~~L~I~~~~~~Dsg~YyCa~~~ 103 (122)
T d1nezg_ 81 KYVLTLNKFSKENEGYYFCSVIS 103 (122)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEE
T ss_pred EeEEEEcccccCCCEEEEeeEeC
Confidence 67999999999999999998753
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.08 E-value=1.1e-10 Score=80.68 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=54.0
Q ss_pred ceeeecCCcEEEEEEE-eeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe--
Q psy8823 33 EQIKDIGGTVELKCSV-QYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG-- 109 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-- 109 (386)
...+.+|++++|.|.+ .+.|.+.+.|+|++........... ...++.... +.+|.|.+++.+|+|
T Consensus 11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~-------~~~~~~~~~-----~~~L~i~~v~~~D~gd~ 78 (111)
T d1biha2 11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD-------FDRRITAGP-----DGNLYFTIVTKEDVSDI 78 (111)
T ss_dssp EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCC-------CCTTEEECT-----TSCEEEEEECGGGCCSS
T ss_pred cccccCCCeEEEEEEcccCCCCCEEEEEeCCcccccccccee-------eeeeecccc-----ccccEEeeeEeeccCCc
Confidence 3347799999999986 7899999999998876532111100 111122211 237999999999877
Q ss_pred -EEEEEeEEcccce
Q psy8823 110 -YYRCQVIIGINNK 122 (386)
Q Consensus 110 -~Y~C~~~~~~~~~ 122 (386)
.|+|.|.|..+..
T Consensus 79 g~Y~C~A~N~~g~~ 92 (111)
T d1biha2 79 YKYVCTAKNAAVDE 92 (111)
T ss_dssp EEEEEEEECTTCSS
T ss_pred eEEEEEEEeCCCCc
Confidence 7999999876654
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=99.06 E-value=5e-10 Score=76.70 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=56.8
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+..|....+.+|++|+|.|.........+.||+.........+.............++... ....+..|.|.+++.+|
T Consensus 5 tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~~D 82 (107)
T d1kcvl1 5 TQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGS--GSATDFTLTISSVQADD 82 (107)
T ss_dssp EESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCCGGG
T ss_pred ECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEee--ccCCeeecEEHhheecC
Confidence 3446667799999999999987655556999997554433322222111111112344332 33467799999999999
Q ss_pred CeEEEEEeE
Q psy8823 108 AGYYRCQVI 116 (386)
Q Consensus 108 ~G~Y~C~~~ 116 (386)
+|.|.|.+.
T Consensus 83 Sa~YyCa~~ 91 (107)
T d1kcvl1 83 DADYYCGQS 91 (107)
T ss_dssp CEEEEEEEC
T ss_pred CceEEEEec
Confidence 999999754
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=99.06 E-value=5.7e-10 Score=76.02 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=57.8
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+..|....+.+|++|+|.|.........+.||+.........+.........-...++... ....++.|.|.+++.+|
T Consensus 4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~--~~~~~~~L~I~~~~~~D 81 (106)
T d1op3k1 4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGS--GSGTEFTLTISGLQFDD 81 (106)
T ss_dssp EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEEEESCCGGG
T ss_pred eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeee--ccCCEEEEEEccccccC
Confidence 3456777899999999999987555556999997655433322222111111112344433 23566789999999999
Q ss_pred CeEEEEEeE
Q psy8823 108 AGYYRCQVI 116 (386)
Q Consensus 108 ~G~Y~C~~~ 116 (386)
+|.|.|.+.
T Consensus 82 sa~YyCa~~ 90 (106)
T d1op3k1 82 FATYHCQHY 90 (106)
T ss_dssp CSEEEEEEE
T ss_pred CCcEeeeeC
Confidence 999999765
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=99.06 E-value=3.8e-10 Score=78.07 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=61.6
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+..|....+.+|++|+|.|.........+.||+.........+.............++..........++|.|.+++.+|
T Consensus 3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 82 (110)
T d1u3ha1 3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD 82 (110)
T ss_dssp ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence 34466677899999999999875444558999975443333222222222223345555555566678899999999999
Q ss_pred CeEEEEEeEE
Q psy8823 108 AGYYRCQVII 117 (386)
Q Consensus 108 ~G~Y~C~~~~ 117 (386)
+|.|.|.+..
T Consensus 83 sa~YyCa~~~ 92 (110)
T d1u3ha1 83 SATYFCAASA 92 (110)
T ss_dssp CSEEEECCEE
T ss_pred ceeEeeeecC
Confidence 9999998753
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=99.05 E-value=4.3e-10 Score=76.61 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=56.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.||+.........+.............++... ....+++|.|.+++.+
T Consensus 4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~--~~~~~~~L~I~~~~~~ 81 (106)
T d1i8ka_ 4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSS--GTGTDFVFTIENTLSE 81 (106)
T ss_dssp EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEe--CCCCeeeecccCCccc
Confidence 34456677789999999999877555556999986544332222211111111112344332 2345789999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|...
T Consensus 82 Dsa~YyCa~~ 91 (106)
T d1i8ka_ 82 DVGDYYCLQS 91 (106)
T ss_dssp GCEEEEEEEC
T ss_pred cCEEEeEecC
Confidence 9999999754
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=99.04 E-value=1.1e-09 Score=75.37 Aligned_cols=91 Identities=12% Similarity=0.197 Sum_probs=64.9
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.|||.........+.............++....+.......|.|.+++.+
T Consensus 3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~ 82 (110)
T d1ac6a_ 3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES 82 (110)
T ss_dssp EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence 45556677799999999999877555556999997654433333322222233345677776666667789999999999
Q ss_pred CCeEEEEEeEE
Q psy8823 107 DAGYYRCQVII 117 (386)
Q Consensus 107 d~G~Y~C~~~~ 117 (386)
|+|.|.|.+..
T Consensus 83 Dsa~YyCA~~~ 93 (110)
T d1ac6a_ 83 DSAVYYCALSG 93 (110)
T ss_dssp GCEEEEEEEEE
T ss_pred CCcccceeecC
Confidence 99999998753
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=5.3e-10 Score=76.29 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=56.3
Q ss_pred eeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
.+|+...+.+|++|+|.|...+.....+.||+.........+.........-...++... ....++.|.|.+++.+|+
T Consensus 5 tQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~--~~~~~~~L~I~~~~~~Ds 82 (106)
T d1lk3l1 5 TQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGS--GSGTDFTLTIDPVEADDT 82 (106)
T ss_dssp ECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCCGGGC
T ss_pred eeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeee--cCCCEEEeEECCcChhhC
Confidence 345566689999999999987555566999997655433322222211111112344333 234567999999999999
Q ss_pred eEEEEEeE
Q psy8823 109 GYYRCQVI 116 (386)
Q Consensus 109 G~Y~C~~~ 116 (386)
|.|.|...
T Consensus 83 a~YyCa~~ 90 (106)
T d1lk3l1 83 AIYFCQQS 90 (106)
T ss_dssp EEEEEEEC
T ss_pred CCcccccc
Confidence 99999643
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=99.03 E-value=7.6e-10 Score=75.53 Aligned_cols=88 Identities=17% Similarity=0.308 Sum_probs=57.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.||+.........+.........-...++... ....+.+|.|.+++.+
T Consensus 4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~--~~~~~~~L~I~~~~~~ 81 (107)
T d1d5il1 4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGS--GSGQDYSLTISSLEYE 81 (107)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeec--ccCCEEEccccccCCc
Confidence 44556677789999999999887555556899997654433322222111111112344433 2345679999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|...
T Consensus 82 Dsa~YyCa~~ 91 (107)
T d1d5il1 82 DMGIYYCLQY 91 (107)
T ss_dssp GCEEEEEEEC
T ss_pred CCEEEEeeec
Confidence 9999999754
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=99.03 E-value=6.5e-10 Score=75.82 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=56.7
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+..|....+.+|++|+|.|.........+.||+.........+.............++... ....++.|.|.+++++|
T Consensus 5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~--~~~~~~~L~I~~~~~~D 82 (107)
T d1mexl1 5 TQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGS--GSGTDFTLTINNVQSED 82 (107)
T ss_dssp ECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEEESSCCGGG
T ss_pred EcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeec--CCCCeeeeeechhheec
Confidence 3445556789999999999976554556999997655433333222221111112344432 33467899999999999
Q ss_pred CeEEEEEeE
Q psy8823 108 AGYYRCQVI 116 (386)
Q Consensus 108 ~G~Y~C~~~ 116 (386)
+|.|.|.+.
T Consensus 83 sA~YyCa~~ 91 (107)
T d1mexl1 83 LAEYFCQQY 91 (107)
T ss_dssp CSEEEEEEC
T ss_pred ceeEEEeEC
Confidence 999999754
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=99.03 E-value=1.1e-09 Score=74.57 Aligned_cols=88 Identities=15% Similarity=0.271 Sum_probs=57.1
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.||+.........+...... ...+............+++|.|.+++.+
T Consensus 4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~l~~~ 81 (108)
T d1jhll_ 4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGST--LQSGIPSRFSGSGSGTDFTLTISSLEPE 81 (108)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTE--ECTTCCTTEEEEESSSEEEEEECSCCTT
T ss_pred EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeecc--ccCCccccccccCCCCEEEeEeeeeEec
Confidence 44556777799999999999987555556999997655433222221111 1111111222233456779999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|...
T Consensus 82 Dsa~YyCA~~ 91 (108)
T d1jhll_ 82 DFAMYICQQH 91 (108)
T ss_dssp CCSEEEEEEC
T ss_pred cceEEEEeeC
Confidence 9999999654
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=2.5e-10 Score=76.83 Aligned_cols=89 Identities=12% Similarity=0.148 Sum_probs=57.3
Q ss_pred ccccCCCcEEEEEEEE-ecCC-CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 235 LGQALQYDMDLECHVE-AYPP-PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~-g~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
+....|++|+|.|... .... ..+.|++++..+....................+++|.|.+++.+|+|.|+|.+.+..|
T Consensus 5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g 84 (98)
T d1hnga1 5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 84 (98)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence 3456799999999632 2222 3699999987643222111111110000112356899999999999999999999999
Q ss_pred ce--eeEEEEEEE
Q psy8823 313 TS--EKTVELFES 323 (386)
Q Consensus 313 ~~--~~~~~l~v~ 323 (386)
.. ++.+.|.|.
T Consensus 85 ~~~~~~~~~L~V~ 97 (98)
T d1hnga1 85 TRILNKALDLRIL 97 (98)
T ss_dssp CEEEEEEEEEEEE
T ss_pred CEEEEEEEEEEEE
Confidence 87 556666663
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=99.00 E-value=1.1e-09 Score=75.49 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=59.1
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+|+...+.+|++|+|.|..++.. ...+.|||.........+............+++....+.....+.|.|.+++.+|
T Consensus 6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D 85 (111)
T d1cd0a_ 6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED 85 (111)
T ss_dssp CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence 35566689999999999986543 2348999976443222222221111112345676766666778999999999999
Q ss_pred CeEEEEEeE
Q psy8823 108 AGYYRCQVI 116 (386)
Q Consensus 108 ~G~Y~C~~~ 116 (386)
+|.|.|...
T Consensus 86 sa~YyCA~~ 94 (111)
T d1cd0a_ 86 EADYYCQSY 94 (111)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEeec
Confidence 999999754
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=99.00 E-value=8.7e-10 Score=76.66 Aligned_cols=90 Identities=16% Similarity=0.327 Sum_probs=62.2
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
|+..+....+.+|++|+|.|.........+.||+.........+. ............+...........++|.|.+++.
T Consensus 3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1i9ea_ 3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW 82 (115)
T ss_dssp EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence 444455677899999999999876555668899855443322222 2233333334455556555566778999999999
Q ss_pred CCCeEEEEEeE
Q psy8823 106 TDAGYYRCQVI 116 (386)
Q Consensus 106 ~d~G~Y~C~~~ 116 (386)
+|+|.|.|.+.
T Consensus 83 ~Dsg~YyCa~~ 93 (115)
T d1i9ea_ 83 SDSAVYFCAVS 93 (115)
T ss_dssp GGCEEEEEEEE
T ss_pred cccceeccccc
Confidence 99999999765
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=5.5e-10 Score=79.35 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=61.2
Q ss_pred cceeeecCCcEEEEEEEeeCCC----CcEEEEecCCcccccccc--c-cCCceeEEe----ccceeeec-CCCcceEEEE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPLP--I-STGSSLIIR----DSRFAIRY-DTASSTYTLL 99 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~~--~-~~~~~~~~~----~~~~~~~~-~~~~~~~~L~ 99 (386)
....+.+|++|+|+|.+...+. ..+.|++........... . ..+...... .+|..+.. +...++++|.
T Consensus 12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~ 91 (124)
T d1eaja_ 12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN 91 (124)
T ss_dssp EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence 3456889999999999874422 348899855443222111 1 111111101 12333322 2344567899
Q ss_pred EcccCCCCCeEEEEEeEEcccceeeeEEEEEEe
Q psy8823 100 VKDIQETDAGYYRCQVIIGINNKISAEVDLQVR 132 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 132 (386)
|.+++.+|+|.|.|.+.+.. +..+..+.|.|.
T Consensus 92 I~~v~~~D~G~Y~C~v~~~~-~~~~~~~~L~V~ 123 (124)
T d1eaja_ 92 VTNLQLSDIGTYQCKVKKAP-GVANKKIHLVVL 123 (124)
T ss_dssp ECSCCGGGCEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred EcccEEccCEEEEEEEEECC-CeEEeEEEEEEE
Confidence 99999999999999998654 445667777764
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.99 E-value=2.1e-09 Score=74.44 Aligned_cols=89 Identities=15% Similarity=0.214 Sum_probs=63.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|...+ ....+.||+.........+.............++....+......+|.|.+++.+
T Consensus 3 l~Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (115)
T d1ogad1 3 LEQSPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG 81 (115)
T ss_dssp CEEECSEEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred eEeCCCeEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence 344566677999999999998764 3446999997655433322222222223445677777777788899999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|.+.
T Consensus 82 Dsa~YyCa~~ 91 (115)
T d1ogad1 82 DTGLYLCAGA 91 (115)
T ss_dssp GCEEEEEEEE
T ss_pred ceeeEccccc
Confidence 9999999765
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.98 E-value=1.8e-09 Score=74.10 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=57.7
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|...+.....+.||+.........+...........+.++... ....++.|.|.+++.+
T Consensus 6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~--~~~~~~~L~I~~l~~~ 83 (109)
T d1bwwa_ 6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGS--GSGTDYTFTISSLQPE 83 (109)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCCGG
T ss_pred EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEee--CCCCEeEEEEeeceeC
Confidence 34456677799999999999987655566899997655433322222111111112344433 2345678999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|.+.
T Consensus 84 Dsa~YyCA~~ 93 (109)
T d1bwwa_ 84 DIATYYCQQY 93 (109)
T ss_dssp GCEEEEEEEC
T ss_pred cCceEEEeec
Confidence 9999999754
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=2.8e-10 Score=78.88 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=48.7
Q ss_pred eeeecCCcEEEEEEEeeCCC---CcEEEEe--cCCccccccccccCCc-eeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 34 QIKDIGGTVELKCSVQYAQD---YPVIWMK--VDRNKVTEPLPISTGS-SLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~---~~v~W~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
..+..|++|+|+|.+..... ..+.|++ +.... ......+. .....++++..+.....++.+|.|.+++.+|
T Consensus 4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D 80 (110)
T d1ncna_ 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLV---LNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKD 80 (110)
T ss_dssp EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCE---EEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGG
T ss_pred EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccce---EEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhH
Confidence 34779999999999864332 2244443 22211 11111111 1111234454444444556799999999999
Q ss_pred CeEEEEEeEEc
Q psy8823 108 AGYYRCQVIIG 118 (386)
Q Consensus 108 ~G~Y~C~~~~~ 118 (386)
+|.|.|.+...
T Consensus 81 ~G~Y~C~V~~~ 91 (110)
T d1ncna_ 81 KGLYQCIIHHK 91 (110)
T ss_dssp CEEEEEEEEEE
T ss_pred CEEEEEEEEec
Confidence 99999998754
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.97 E-value=2.8e-09 Score=70.90 Aligned_cols=78 Identities=24% Similarity=0.385 Sum_probs=56.9
Q ss_pred CCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEeEE
Q psy8823 39 GGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQVII 117 (386)
Q Consensus 39 G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 117 (386)
|++|+|.|.........+.||+.........+..... .....++++....+......+|.|.+++.+|+|.|.|.+..
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~-~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYS-NGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT 78 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECS-SEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeee-eccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence 7899999998766666799999665543322222222 22345667877766777788999999999999999998763
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=4.3e-10 Score=79.38 Aligned_cols=88 Identities=19% Similarity=0.300 Sum_probs=56.3
Q ss_pred ccceeeecCCcEEEEEEEeeCC-------CCcEEEEecCCccccccccccCCc-eeE--EeccceeeecCCCcceEEEEE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ-------DYPVIWMKVDRNKVTEPLPISTGS-SLI--IRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~-------~~~v~W~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~L~i 100 (386)
+....+.+|++|+|+|.++... ...+.|++.........+...... ... ...+|+.+..+...++++|.|
T Consensus 8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (121)
T d2g5ra1 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI 87 (121)
T ss_dssp CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence 3456689999999999986321 123789987655433322222211 111 113466666666677889999
Q ss_pred cccCCCCCeEEEEEeEEc
Q psy8823 101 KDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~ 118 (386)
.+++.+|+|.|.|++...
T Consensus 88 ~~v~~~DsG~Y~C~v~~~ 105 (121)
T d2g5ra1 88 RDARMSDAGRYFFRMEKG 105 (121)
T ss_dssp CSCCGGGCEEEEEEEEET
T ss_pred CCCChHHCEEEEEEEEeC
Confidence 999999999999998753
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.96 E-value=2.5e-09 Score=73.80 Aligned_cols=83 Identities=19% Similarity=0.436 Sum_probs=58.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
++..|....+.+|++|+|.|...+. ....+.||+......... +...++++....+.....++|.|.+++
T Consensus 3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~L~I~~l~ 74 (113)
T d1vesa_ 3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ--------SISIGGRYVETVNKGSKSFSLRISDLR 74 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE--------ECCCBTTEEEEEETTTTEEEEEECSCC
T ss_pred eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeecccccee--------eeeecccccceeECCCCceeeeecccc
Confidence 5566777889999999999998743 334589998654332211 112344555555555667899999999
Q ss_pred CCCCeEEEEEeEE
Q psy8823 105 ETDAGYYRCQVII 117 (386)
Q Consensus 105 ~~d~G~Y~C~~~~ 117 (386)
.+|+|.|.|.+..
T Consensus 75 ~~Dsa~YyCa~~~ 87 (113)
T d1vesa_ 75 VEDSGTYKCQAFY 87 (113)
T ss_dssp GGGCEEEEEEEEE
T ss_pred cCCcceEeeeeec
Confidence 9999999998764
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.96 E-value=3.9e-09 Score=72.51 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=57.6
Q ss_pred ccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 109 (386)
|+.+.+.+|++|+|.|...... ...+.||+.........+....... ....+.+.........++|.|.+++.+|+|
T Consensus 5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 82 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNN--ETNEMASLIITEDRKSSTLILPHATLRDTA 82 (110)
T ss_dssp CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSC--EECSSCEEEECTTCSEEEEEESSCCGGGCE
T ss_pred CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeecee--cccccceeeecccCCeeeehhcccccCCce
Confidence 4566788999999999976433 3458899965543322222222221 123445555556677889999999999999
Q ss_pred EEEEEeEE
Q psy8823 110 YYRCQVII 117 (386)
Q Consensus 110 ~Y~C~~~~ 117 (386)
.|.|.+..
T Consensus 83 ~YyCa~~~ 90 (110)
T d2esvd1 83 VYYCIVVR 90 (110)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 99998764
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.96 E-value=1.2e-09 Score=75.98 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=63.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
++..|....+.+|++|+|.|.........+.||+.........+. ............++............|.|.+++.
T Consensus 3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1j8hd1 3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM 82 (115)
T ss_dssp EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence 455566777999999999999876555669999966443322222 2222333333456666555556667899999999
Q ss_pred CCCeEEEEEeEE
Q psy8823 106 TDAGYYRCQVII 117 (386)
Q Consensus 106 ~d~G~Y~C~~~~ 117 (386)
+|+|.|.|.+..
T Consensus 83 ~Dsa~YyCa~~~ 94 (115)
T d1j8hd1 83 SDAAEYFCAVSE 94 (115)
T ss_dssp GGCEEEEEEEES
T ss_pred cCCccceeeecC
Confidence 999999998864
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.96 E-value=1.7e-09 Score=75.31 Aligned_cols=91 Identities=14% Similarity=0.197 Sum_probs=61.7
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCcccccccc-ccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
++..+..+.+.+|++|+|.|..... ....+.||+.........+. ...........+++....+.....++|.|.+++
T Consensus 2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 81 (115)
T d1fo0a_ 2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ 81 (115)
T ss_dssp EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence 4455666779999999999987643 33458899966443222221 122222222345677766666678899999999
Q ss_pred CCCCeEEEEEeEE
Q psy8823 105 ETDAGYYRCQVII 117 (386)
Q Consensus 105 ~~d~G~Y~C~~~~ 117 (386)
.+|+|.|.|.+..
T Consensus 82 ~~Dsa~YyCa~~~ 94 (115)
T d1fo0a_ 82 IEDSAVYFCAMRG 94 (115)
T ss_dssp GGGCEEEEEEEEC
T ss_pred ccccccccceeec
Confidence 9999999998763
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.95 E-value=4.4e-10 Score=76.73 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=57.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.||+.........+.............++... ....+++|.|.+++.+
T Consensus 4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~--~~~~~~~L~I~~~~~~ 81 (107)
T d3cx5k1 4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGS--GSGTDYSLTISNLEPE 81 (107)
T ss_dssp EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCE--EETTEEEEECSCCCSC
T ss_pred EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEE--ccCCEEEEEEeEeeec
Confidence 44556777799999999999976555556999997655433322222221111112333332 2345789999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|...
T Consensus 82 Dsa~YyCa~~ 91 (107)
T d3cx5k1 82 DIATYFCQHH 91 (107)
T ss_dssp CCSEEEEEEC
T ss_pred CCCcEEeeeC
Confidence 9999999653
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.95 E-value=2.2e-09 Score=74.48 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=62.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCcccccccc-ccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
++..+....+.+|++|+|.|...... ...+.||+.........+. ............++.........+++|.|.+++
T Consensus 3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 82 (114)
T d2ak4d1 3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ 82 (114)
T ss_dssp EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence 45556677799999999999876433 3447899965443222222 222223333455666666666778899999999
Q ss_pred CCCCeEEEEEeEE
Q psy8823 105 ETDAGYYRCQVII 117 (386)
Q Consensus 105 ~~d~G~Y~C~~~~ 117 (386)
.+|+|.|.|.+..
T Consensus 83 ~~Dsg~YyCa~~~ 95 (114)
T d2ak4d1 83 VVDSAVYFCALSG 95 (114)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cccCCCceEeCCC
Confidence 9999999997654
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=9.1e-10 Score=77.41 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=57.8
Q ss_pred ccceeeecCCcEEEEEEEeeCC------CCcEEEEecCCccccccccccCCcee--EEeccceeeecCCCcceEEEEEcc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ------DYPVIWMKVDRNKVTEPLPISTGSSL--IIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
|+.+.+.+|++|+|+|.+..+. ...+.|++......... ........ ....+|+.+..+...++++|.|.+
T Consensus 7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 85 (118)
T d1qfoa_ 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVV-IHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD 85 (118)
T ss_dssp CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEE-EESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceecccee-eeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence 5567799999999999987321 12356877654432211 11111111 112456667666677888999999
Q ss_pred cCCCCCeEEEEEeEEcc
Q psy8823 103 IQETDAGYYRCQVIIGI 119 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~ 119 (386)
++.+|+|.|.|++....
T Consensus 86 v~~~DsG~Y~C~v~~~~ 102 (118)
T d1qfoa_ 86 LKPEDSGTYNFRFEISD 102 (118)
T ss_dssp CCGGGCEEEEEEEECC-
T ss_pred CChhHCEEEEEEEEeCC
Confidence 99999999999997543
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.94 E-value=3.2e-09 Score=73.82 Aligned_cols=88 Identities=14% Similarity=0.307 Sum_probs=57.7
Q ss_pred eeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccc----cccCCceeEE----eccceeeecCCCcceEEEE
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPL----PISTGSSLII----RDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~ 99 (386)
..|....+.+|++|+|.|.+.+. ....+.||+.........+ .......... ...++...........+|.
T Consensus 3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (115)
T d2atpb1 3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS 82 (115)
T ss_dssp EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence 45667779999999999998753 4456899986443222211 1111111111 1234555555666778999
Q ss_pred EcccCCCCCeEEEEEeE
Q psy8823 100 VKDIQETDAGYYRCQVI 116 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~ 116 (386)
|.+++.+|+|.|.|.+.
T Consensus 83 I~~~~~~Dsg~Y~Ca~~ 99 (115)
T d2atpb1 83 IMNVKPEDSDFYFCATV 99 (115)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ecccCCCCCcEEEEeEc
Confidence 99999999999999764
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.3e-09 Score=75.64 Aligned_cols=85 Identities=15% Similarity=0.302 Sum_probs=58.4
Q ss_pred ceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCc---eeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 33 EQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGS---SLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 33 ~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
...+.+|++|+|.|.+.+. ....+.|+|.........+...... ......+|+.+..+...+..+|.|.+++.+|
T Consensus 8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D 87 (113)
T d1smoa_ 8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED 87 (113)
T ss_dssp EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence 3557899999999987632 3456889996554332222222211 1122345777776677788899999999999
Q ss_pred CeEEEEEeEE
Q psy8823 108 AGYYRCQVII 117 (386)
Q Consensus 108 ~G~Y~C~~~~ 117 (386)
+|.|.|.+..
T Consensus 88 sg~Y~Cav~~ 97 (113)
T d1smoa_ 88 SGLYQCVIYQ 97 (113)
T ss_dssp CEEEEEEECC
T ss_pred CceEEEEEEC
Confidence 9999998754
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.94 E-value=1.8e-09 Score=73.95 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=56.3
Q ss_pred eeeccceeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+..|....+.+|++|+|.|..... ....+.||+.........+.............++... .....+.|.|.+++.+
T Consensus 5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~--~~~~~~~L~I~~~~~~ 82 (108)
T d2fx7l1 5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGS--GSGTDFTLTISRLEPE 82 (108)
T ss_dssp ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE--EETTEEEEEESSCCGG
T ss_pred EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeee--cCCCEEEEEehHheec
Confidence 344666778999999999987643 2345899998765543333222221111122334332 2345679999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|.+.
T Consensus 83 Dsa~YyCa~~ 92 (108)
T d2fx7l1 83 DFAVYYCQQY 92 (108)
T ss_dssp GCSEEEEEEC
T ss_pred ccEEEeeecC
Confidence 9999999754
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.93 E-value=1.8e-09 Score=73.27 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=53.7
Q ss_pred ccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
|+...+.+|++|+|.|.........+.|||.........+...........+.++... .......|.|.+++.+|+|.
T Consensus 5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~~Dsa~ 82 (103)
T d8faba1 5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSS--TSGTTVTLTISGVQAEDEAD 82 (103)
T ss_dssp CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE--EETTEEEEEETTCCGGGCEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEEC--CCCCccCceEcCcchhHCce
Confidence 3456688999999999876544456899997654432222211111111122333333 33456799999999999999
Q ss_pred EEEEeE
Q psy8823 111 YRCQVI 116 (386)
Q Consensus 111 Y~C~~~ 116 (386)
|.|.+.
T Consensus 83 YyCA~~ 88 (103)
T d8faba1 83 YYCQAW 88 (103)
T ss_dssp EEEEEE
T ss_pred EEeeec
Confidence 999765
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.93 E-value=2.1e-09 Score=73.45 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=57.7
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.||+.........+.............++... .....+.|.|.+++.+
T Consensus 4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~--~~~~~~~L~I~~~~~~ 81 (109)
T d1mqkl_ 4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGS--GSGTQFSLKINSLLPE 81 (109)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEESSCCGG
T ss_pred EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEe--ccCCEEEEEEcccccc
Confidence 44456777789999999999987554556999996655433322221111111112344332 3456789999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|.+.
T Consensus 82 DSa~YyCA~~ 91 (109)
T d1mqkl_ 82 DFGSYYCQHH 91 (109)
T ss_dssp GCEEEEEEEC
T ss_pred CCeeEEEeee
Confidence 9999999765
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.93 E-value=2e-09 Score=73.21 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=56.7
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|.........+.||+.........+.............++... ....+++|.|.+++.+
T Consensus 3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~L~I~~~~~~ 80 (106)
T d1a0ql1 3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGS--GSGRDYSFSISNLEPE 80 (106)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EETTEEEEEECSCCGG
T ss_pred eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEee--cCCCEeeeEehhhccc
Confidence 44556777789999999999876555556999996543322222221111111112344333 3356779999999999
Q ss_pred CCeEEEEEeE
Q psy8823 107 DAGYYRCQVI 116 (386)
Q Consensus 107 d~G~Y~C~~~ 116 (386)
|+|.|.|.+.
T Consensus 81 DsA~YyCa~~ 90 (106)
T d1a0ql1 81 DIATYYCLQY 90 (106)
T ss_dssp GCSEEEEEEC
T ss_pred CCEeEEEEEe
Confidence 9999999754
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.92 E-value=3.7e-09 Score=72.56 Aligned_cols=83 Identities=19% Similarity=0.440 Sum_probs=58.9
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+...|....+.+|++|+|.|...+. ....+.||+......... +...++++....+.....++|.|.+++
T Consensus 2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~--------~~~~~gr~~~~~~~~~~~~~L~I~~l~ 73 (112)
T d1sq2n_ 2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEE--------SISKGGRYVETVNSGSKSFSLRINDLT 73 (112)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCE--------ECCCBTTEEEEEETTTTEEEEEECSCC
T ss_pred CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeee--------eeccCCcEeeEEecCCceeeeEecCCc
Confidence 4455667778899999999988643 345689999654432211 222344565555556677899999999
Q ss_pred CCCCeEEEEEeEE
Q psy8823 105 ETDAGYYRCQVII 117 (386)
Q Consensus 105 ~~d~G~Y~C~~~~ 117 (386)
.+|+|.|.|.+..
T Consensus 74 ~~Dsa~YyCA~~~ 86 (112)
T d1sq2n_ 74 VEDGGTYRCGLGV 86 (112)
T ss_dssp GGGCEEEEEEECB
T ss_pred CccCEEEeEEEec
Confidence 9999999997653
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3.2e-09 Score=73.53 Aligned_cols=89 Identities=22% Similarity=0.430 Sum_probs=58.8
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccc-cc-cCCceeEEe----ccceeeecCCCcceEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPL-PI-STGSSLIIR----DSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~-~~-~~~~~~~~~----~~~~~~~~~~~~~~~~L~ 99 (386)
+...|....+.+|++|+|.|.+.... ...+.|||.........+ .+ ..+...... ..++.... ...+.+|.
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~--~~~~~~L~ 80 (114)
T d1akjd_ 3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR--LGDTFVLT 80 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE--ETTEEEEE
T ss_pred eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC--CCCChhcE
Confidence 66778888899999999999987543 345899997654432222 11 111111111 12343332 34567999
Q ss_pred EcccCCCCCeEEEEEeEE
Q psy8823 100 VKDIQETDAGYYRCQVII 117 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~ 117 (386)
|.+++.+|+|.|.|.+..
T Consensus 81 I~~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 81 LSDFRRENEGYYFCSALS 98 (114)
T ss_dssp ESSCCGGGCEEEEEEEEE
T ss_pred EccCCCCCCEEEeEeEcC
Confidence 999999999999998763
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=5.7e-09 Score=71.00 Aligned_cols=87 Identities=20% Similarity=0.370 Sum_probs=60.7
Q ss_pred cceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccC-C--ceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 32 QEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPIST-G--SSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+...+.+|++|+|.|..++. ....+.|+|.........+.... + .......+|+.+..+...+..+|+|.+++.+
T Consensus 3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e 82 (110)
T d1u9ka_ 3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT 82 (110)
T ss_dssp EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence 34568899999999998743 44568899965443222222211 1 1122335678888777888899999999999
Q ss_pred CCeEEEEEeEEc
Q psy8823 107 DAGYYRCQVIIG 118 (386)
Q Consensus 107 d~G~Y~C~~~~~ 118 (386)
|+|.|.|.....
T Consensus 83 Dsa~YyCa~~~~ 94 (110)
T d1u9ka_ 83 DSGLYRCVIYHP 94 (110)
T ss_dssp GCEEEEEEEECT
T ss_pred CCEEEEEEEeCC
Confidence 999999987644
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=3.4e-09 Score=71.33 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=60.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...|.. .|..|++|+|.|... .+...+.|+|++...... .. ............+.|.+
T Consensus 6 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~-------------~~--~~~~~~~~~~a~F~l~~ 68 (99)
T d1ucta1 6 PMPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYRE-------------IG--RRLKFWNETDPEFVIDH 68 (99)
T ss_dssp CCCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEE-------------CS--EECC----CCCEEEECS
T ss_pred CCCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCcee-------------cc--ccccCCCCceEEEEecC
Confidence 46788887754 588999999999875 456679999976532110 00 00001112233789999
Q ss_pred cCCCCCeEEEEEeEEccc-ceeeeEEEEEE
Q psy8823 103 IQETDAGYYRCQVIIGIN-NKISAEVDLQV 131 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v 131 (386)
++..|+|.|+|...+... ...+..+.|.|
T Consensus 69 vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V 98 (99)
T d1ucta1 69 MDANKAGRYQCQYRIGHYRFRYSDTLELVV 98 (99)
T ss_dssp CCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred CCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence 999999999999876543 34466666665
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.91 E-value=5.9e-09 Score=71.63 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=56.1
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+++...+.+|++|+|.|...+.. ...+.||+.........+.............++.... ...++.|.|.+++.+|
T Consensus 6 Q~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D 83 (114)
T d2rhea_ 6 QPPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK--SGTSASLAISGLESED 83 (114)
T ss_dssp CCSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGG
T ss_pred cCCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC--CCCeeeeEecccCccc
Confidence 34456688999999999987543 4568999977655433332222111111223443332 3457799999999999
Q ss_pred CeEEEEEeEE
Q psy8823 108 AGYYRCQVII 117 (386)
Q Consensus 108 ~G~Y~C~~~~ 117 (386)
++.|.|....
T Consensus 84 sA~YyCA~~~ 93 (114)
T d2rhea_ 84 EADYYCAAWN 93 (114)
T ss_dssp CEEEEEEEEE
T ss_pred CceEEEeecC
Confidence 9999998764
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.90 E-value=5.7e-09 Score=71.56 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=55.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC----CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++..|....+.+|++|+|.|..+.. ....+.||+.........+.........-...++... ....++.|.|.+
T Consensus 4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~--~~~~~~~L~I~~ 81 (111)
T d2gsia1 4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGS--GSGTDFTLNIHP 81 (111)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EETTEEEEEESS
T ss_pred eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEe--cCCCchhccccc
Confidence 3445667778999999999987532 2234899997654433322222211111112344433 334578999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|+|.|.|.+.
T Consensus 82 ~~~~DsA~YyCa~~ 95 (111)
T d2gsia1 82 VEEEDAATYYCSHI 95 (111)
T ss_dssp CCGGGCEEEEEEEC
T ss_pred ccccCCceEEEEEC
Confidence 99999999999754
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.2e-08 Score=67.76 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=60.6
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...|.. .|..|++|+|.|... .....+.|+|++...... ............+.|.+
T Consensus 3 PKPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~-----------------~~~~~~~~~~a~F~i~~ 63 (95)
T d1olla1 3 PKPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVD-----------------RPKPPERINKVKFYIPD 63 (95)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEE-----------------CCSSCTTCCEEEEEESS
T ss_pred CCCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCccee-----------------EEccCCCccEEEEEEee
Confidence 46888888755 478999999999875 445668899876432100 00111122345799999
Q ss_pred cCCCCCeEEEEEeEEccc-ceeeeEEEEEEe
Q psy8823 103 IQETDAGYYRCQVIIGIN-NKISAEVDLQVR 132 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~ 132 (386)
++..|+|.|+|...+... ...+..+.|.|.
T Consensus 64 v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VT 94 (95)
T d1olla1 64 MNSRMAGQYSCIYRVGELWSEPSNLLDLVVT 94 (95)
T ss_dssp CCGGGCEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred eecCCCceEEEEeCCCCCccCCCCCEEEEEe
Confidence 999999999998765432 334556666653
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.89 E-value=4.3e-09 Score=72.27 Aligned_cols=87 Identities=14% Similarity=0.217 Sum_probs=55.1
Q ss_pred eeeccceeeecCCcEEEEEEEeeC----CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYA----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+..|....+.+|++|+|.|..... ....+.||+.........+.........-...++. ......++.|.|.++
T Consensus 5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~--~~~~~~~~~L~I~~~ 82 (111)
T d1j05a_ 5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFS--GTGSRTDFTLIIDPV 82 (111)
T ss_dssp EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEE--EECSSSEEEEEESSC
T ss_pred EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEE--EecCCCEEEEEEccc
Confidence 344666778999999999987532 22349999976544333222222111111122333 333456789999999
Q ss_pred CCCCCeEEEEEeE
Q psy8823 104 QETDAGYYRCQVI 116 (386)
Q Consensus 104 ~~~d~G~Y~C~~~ 116 (386)
+.+|+|.|.|.+.
T Consensus 83 ~~~Dsa~YyCa~~ 95 (111)
T d1j05a_ 83 EADDVATYYCQQT 95 (111)
T ss_dssp CGGGCEEEEEEEC
T ss_pred ccccCccEEEeec
Confidence 9999999999754
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.89 E-value=7e-09 Score=71.34 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=57.4
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC-----CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA-----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
++..|....+.+|++|+|.|..++. ....+.||+.........+.............++.... ...+++|.|.
T Consensus 5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~ 82 (113)
T d1n4xl_ 5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKIS 82 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--CSSEEEEEES
T ss_pred EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeec--cCCcccCccC
Confidence 4445667779999999999997632 22458999977655443333222222111233444332 4567899999
Q ss_pred ccCCCCCeEEEEEe
Q psy8823 102 DIQETDAGYYRCQV 115 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~ 115 (386)
+++.+|+|.|.|..
T Consensus 83 ~~~~~DsavYyCa~ 96 (113)
T d1n4xl_ 83 RVEAEDLGIYYCFQ 96 (113)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred CCCcccCEEEEEEE
Confidence 99999999999954
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.88 E-value=4.2e-09 Score=71.84 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=54.3
Q ss_pred ccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
++...+.+|++|+|.|....... ..+.||+.........+.............++.... ...++.|.|.+++.+|
T Consensus 7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~--~~~~~~L~I~~~~~~D 84 (110)
T d1oaql_ 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGNKAALTITGAQTED 84 (110)
T ss_dssp CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE--ETTEEEEEEESCCGGG
T ss_pred CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecc--cccceeeecCCCCccc
Confidence 44566889999999999864322 238899966444332222222211111234554443 3457899999999999
Q ss_pred CeEEEEEeEE
Q psy8823 108 AGYYRCQVII 117 (386)
Q Consensus 108 ~G~Y~C~~~~ 117 (386)
+|.|.|....
T Consensus 85 sa~YyCa~~~ 94 (110)
T d1oaql_ 85 EAIYFCALWY 94 (110)
T ss_dssp CEEEEEEEEE
T ss_pred cEeEEEEccc
Confidence 9999998653
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.87 E-value=2.9e-09 Score=74.24 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=59.9
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
+..+++...+.+|++++|.|...+.. ...+.||+.........+............+++....+.......|.|.+++
T Consensus 4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~ 83 (120)
T d1hxma1 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (120)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence 44455666789999999999987543 3458999965433222222211111111234666666666667899999999
Q ss_pred CCCCeEEEEEeEE
Q psy8823 105 ETDAGYYRCQVII 117 (386)
Q Consensus 105 ~~d~G~Y~C~~~~ 117 (386)
.+|+|.|.|....
T Consensus 84 ~~Dsa~YyCA~~~ 96 (120)
T d1hxma1 84 ERDEGSYYCACDT 96 (120)
T ss_dssp GGGCEEEEEEEEC
T ss_pred ccCCceeecCccc
Confidence 9999999997653
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.86 E-value=1.1e-10 Score=78.09 Aligned_cols=84 Identities=15% Similarity=0.255 Sum_probs=56.8
Q ss_pred eeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 34 QIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
+.|.+|++|+|.|.... ....+.|||.........+............+++....+......+|.|.+++.+|+|.|.|
T Consensus 3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC 81 (96)
T d1ymmd1 3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC 81 (96)
T ss_dssp CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence 45789999999998753 34469999965443322222211111223456676666666667789999999999999999
Q ss_pred EeEEc
Q psy8823 114 QVIIG 118 (386)
Q Consensus 114 ~~~~~ 118 (386)
.+...
T Consensus 82 A~~~~ 86 (96)
T d1ymmd1 82 ATDTT 86 (96)
T ss_dssp EEEET
T ss_pred eEecC
Confidence 87643
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.85 E-value=1.5e-08 Score=69.62 Aligned_cols=89 Identities=11% Similarity=0.246 Sum_probs=57.0
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccccc-CCceeEEe--ccceeeecCCCcceEEEEEcc
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIS-TGSSLIIR--DSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.++..|...++.+|++|+|.|.... ....+.|||.........+... ........ ..++.... ....+..|.|.+
T Consensus 3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~ 80 (110)
T d2aq2a1 3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASR-PSQEQFSLILES 80 (110)
T ss_dssp SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEE-EETTEEEEEESS
T ss_pred CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEe-ccCCEEEEEECC
Confidence 3566677888999999999998763 3456999997655433322221 11111111 12222211 233467999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|+|.|.|...
T Consensus 81 ~~~~Dsa~YyCa~~ 94 (110)
T d2aq2a1 81 ATPSQTSVYFCASG 94 (110)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred CCHhhCEEEEEeeC
Confidence 99999999999765
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.84 E-value=1.2e-08 Score=70.11 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=54.8
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
|+...+.+|++|+|.|..++.. ...+.||+.........+.............++.... ....++|.|.+++.+|+
T Consensus 7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~~Ds 84 (111)
T d1rzfl1 7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSK--SGTSATLGITGLQTGDE 84 (111)
T ss_dssp CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEESSCCGGGC
T ss_pred CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeC--CCCEeeeEEeeeccccC
Confidence 4556788999999999876433 3459999975544333222222111111123443332 34567999999999999
Q ss_pred eEEEEEeEE
Q psy8823 109 GYYRCQVII 117 (386)
Q Consensus 109 G~Y~C~~~~ 117 (386)
|.|.|.+..
T Consensus 85 a~YyCA~~~ 93 (111)
T d1rzfl1 85 ADYYCGTWD 93 (111)
T ss_dssp SEEEEEEEE
T ss_pred cceEEeecC
Confidence 999998764
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.83 E-value=2.2e-08 Score=69.03 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=58.0
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
+...|....+.+|++|+|.|.... ....+.||+.........+....... .................++|.|.+++.+
T Consensus 4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 81 (113)
T d1h5ba_ 4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGT-KENGRLKSAFDSERARYSTLHIRDAQLE 81 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSE-EEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeee-ccccccceEEeecCCceeEEEECCCCHh
Confidence 555677788999999999999864 34568999965443322222222222 1222222223333456678999999999
Q ss_pred CCeEEEEEeEE
Q psy8823 107 DAGYYRCQVII 117 (386)
Q Consensus 107 d~G~Y~C~~~~ 117 (386)
|+|.|.|.+..
T Consensus 82 Dsa~YyCa~~~ 92 (113)
T d1h5ba_ 82 DSGTYFCAAEA 92 (113)
T ss_dssp GCEEEEEEEEC
T ss_pred HCEEEEEEecC
Confidence 99999998763
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.82 E-value=1.2e-08 Score=70.29 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=56.4
Q ss_pred eccceeeecCCcEEEEEEEeeCC-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
.|....+.+|++|+|.|...+.. ...+.|||.........+........ ...+.++..........|.|.+++.+|+
T Consensus 4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~Ds 81 (112)
T d1kgcd1 4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNV--NNRMASLAIAEDRKSSTLILHRATLRDA 81 (112)
T ss_dssp CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSE--ECSSEEEEECTTSSEEEEEESSCCGGGC
T ss_pred CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceec--cccccceeecccCCeeEEEEeecccccc
Confidence 45566789999999999986443 34489999765443332222222211 2223344444456678999999999999
Q ss_pred eEEEEEeE
Q psy8823 109 GYYRCQVI 116 (386)
Q Consensus 109 G~Y~C~~~ 116 (386)
|.|.|.+.
T Consensus 82 a~YyCa~~ 89 (112)
T d1kgcd1 82 AVYYCILP 89 (112)
T ss_dssp EEEEEECC
T ss_pred eeEeeeEe
Confidence 99999764
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.82 E-value=4.9e-09 Score=71.38 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=55.1
Q ss_pred eccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 109 (386)
+|+...+.+|++|+|.|.........+.||+.........+.............++... ......+|.|.+++.+|+|
T Consensus 6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~l~~~Dsa 83 (109)
T d1w72l1 6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGS--NSGNMATLTISRVEAGDEA 83 (109)
T ss_dssp CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE--EETTEEEEEESSCCGGGCE
T ss_pred eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeee--cCCCccceEEeeeccCCCE
Confidence 34456688999999999876444456999997655433323222211111112233322 2356779999999999999
Q ss_pred EEEEEeEE
Q psy8823 110 YYRCQVII 117 (386)
Q Consensus 110 ~Y~C~~~~ 117 (386)
.|.|.+..
T Consensus 84 vYyCA~~~ 91 (109)
T d1w72l1 84 DYYCQVWD 91 (109)
T ss_dssp EEEEEEEE
T ss_pred EEEEEecC
Confidence 99998764
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.81 E-value=1.6e-08 Score=69.28 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=54.5
Q ss_pred eeeccceeeecCCcEEEEEEEeeC-----CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYA-----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+..|....+.+|++|+|.|..+.. ....+.||+.........+.........-...++.. .....++.|.|.+
T Consensus 5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~--~~~~~~~~L~I~~ 82 (112)
T d1ncwl1 5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTG--SGSGTDFTLKISR 82 (112)
T ss_dssp EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEE--EEETTEEEEEESS
T ss_pred eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEe--eCCCCEEEEEECc
Confidence 344666778999999999986532 223489999766554333322211111111233333 2344678999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|+|.|.|..
T Consensus 83 ~~~eDsAvYYC~~ 95 (112)
T d1ncwl1 83 VEAEDLGVYYCWQ 95 (112)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cccCcCEeEEEEc
Confidence 9999999999953
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.80 E-value=1.7e-08 Score=69.34 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=53.6
Q ss_pred eccceeeecCCcEEEEEEEeeC-----CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccC
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYA-----QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
.|..+.+.+|++|+|.|..++. ....+.||+.........+....... ..+...++........+.|.|.+++
T Consensus 7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~--~~~~~~r~~~~~s~~~~~L~Is~~~ 84 (112)
T d1mjul1 7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNL--ASGVPDRFSGSGSGTAFTLRISRVE 84 (112)
T ss_dssp CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEE--CTTSCTTEEEEECSSEEEEEESSCC
T ss_pred cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcc--cCCCCCcEEeecCCCEEEEEECCcc
Confidence 3455668899999999987643 23458999977554333222222111 1111222333344567899999999
Q ss_pred CCCCeEEEEEe
Q psy8823 105 ETDAGYYRCQV 115 (386)
Q Consensus 105 ~~d~G~Y~C~~ 115 (386)
.+|+|.|.|..
T Consensus 85 ~~DsAvYyCa~ 95 (112)
T d1mjul1 85 AEDVGVYYCLQ 95 (112)
T ss_dssp GGGCEEEEEEE
T ss_pred ccCCceEEEEe
Confidence 99999999953
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.80 E-value=1e-08 Score=71.27 Aligned_cols=90 Identities=19% Similarity=0.338 Sum_probs=59.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccc-ccCCceeEEe----ccceeeecCCCcceEEEEEc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLP-ISTGSSLIIR----DSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~ 101 (386)
+...|....+.+|++|+|.|...+.....+.|||.........+. ...+...... ..++.... .....+.|.|.
T Consensus 4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~L~i~ 82 (118)
T d2ij0c1 4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH-ASPTLSTLTVT 82 (118)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE-CSSSEEEEEEC
T ss_pred EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec-ccccccccccc
Confidence 455566777999999999999876656679999976544322222 1122111111 23444432 34456789999
Q ss_pred ccCCCCCeEEEEEeEE
Q psy8823 102 DIQETDAGYYRCQVII 117 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~ 117 (386)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsa~YyCa~~~ 98 (118)
T d2ij0c1 83 SAHPEDSGFYVCSALA 98 (118)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred ccccccCceEEEEEec
Confidence 9999999999998753
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.80 E-value=1.5e-08 Score=70.56 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=55.7
Q ss_pred ccceeeecCCcEEEEEEEeeCCCC---cEEEEecCCcccccccc-ccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLP-ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
|....+.+|++|+|.|........ .+.|||........... ...........+++....+......+|.|.+++.+
T Consensus 6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (117)
T d1dqta_ 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV 85 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence 455668899999999998643322 37899976543322221 11112222223344444444556789999999999
Q ss_pred CCeEEEEEeEE
Q psy8823 107 DAGYYRCQVII 117 (386)
Q Consensus 107 d~G~Y~C~~~~ 117 (386)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (117)
T d1dqta_ 86 DTGLYLCKVEL 96 (117)
T ss_dssp GCEEEEEEEEE
T ss_pred cCEeEEEEEec
Confidence 99999998753
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.77 E-value=1.4e-08 Score=69.15 Aligned_cols=86 Identities=20% Similarity=0.209 Sum_probs=54.9
Q ss_pred eccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCe
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAG 109 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 109 (386)
+|+...+.+|++|+|.|.........+.||+.........+............+++.... ...++.|.|.+++.+|+|
T Consensus 5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~--~~~~~~L~I~~l~~~Dsa 82 (108)
T d1nfde1 5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEA 82 (108)
T ss_dssp CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCS
T ss_pred CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecC--CCCEeeeeEcCccccCCc
Confidence 355667889999999998754444458999976544322222211111111123444433 345679999999999999
Q ss_pred EEEEEeEE
Q psy8823 110 YYRCQVII 117 (386)
Q Consensus 110 ~Y~C~~~~ 117 (386)
.|.|.+..
T Consensus 83 ~YyCA~~~ 90 (108)
T d1nfde1 83 AYYCLSSY 90 (108)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeec
Confidence 99998753
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=7.7e-09 Score=71.65 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=55.9
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
+..|....+.+|++|+|.|.........+.||+.........+.............++... .....+.|.|.+++.+|
T Consensus 5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~--~~~~~~~L~I~~~~~~D 82 (119)
T d1f3rb2 5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGS--GSGTDYTLTISSLQPED 82 (119)
T ss_dssp CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EEBTEEEEEECSCCGGG
T ss_pred EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeeccc--CCCCEEEEEcccCccCC
Confidence 3445666689999999999876544456999997654433322222111111112333332 23456799999999999
Q ss_pred CeEEEEEeE
Q psy8823 108 AGYYRCQVI 116 (386)
Q Consensus 108 ~G~Y~C~~~ 116 (386)
+|.|.|...
T Consensus 83 savYyCa~~ 91 (119)
T d1f3rb2 83 VATYFCYQY 91 (119)
T ss_dssp CSEEEEEEE
T ss_pred CeEEEeecc
Confidence 999999754
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.75 E-value=1.8e-08 Score=68.29 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=54.1
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
++..|....+.+|++|+|.|..+. ....+.||+.........+.............++. ......+++|.|.+++.+
T Consensus 3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~--~~~~~~~~~L~I~~~~~~ 79 (104)
T d1yqvl1 3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFS--GSGSGTSYSLTISSMETE 79 (104)
T ss_dssp EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEE--EEEETTEEEEEESSCCGG
T ss_pred EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEE--EecCCCEEEEEecccCcc
Confidence 344566677899999999998653 33457999976544332222221111100122222 223356789999999999
Q ss_pred CCeEEEEEe
Q psy8823 107 DAGYYRCQV 115 (386)
Q Consensus 107 d~G~Y~C~~ 115 (386)
|+|.|.|..
T Consensus 80 Dsa~YyCa~ 88 (104)
T d1yqvl1 80 DAATYYCQQ 88 (104)
T ss_dssp GCEEEEEEE
T ss_pred cCCeEEEEe
Confidence 999999964
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.75 E-value=5.1e-08 Score=67.93 Aligned_cols=86 Identities=22% Similarity=0.346 Sum_probs=58.6
Q ss_pred cceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCceeEE----eccceeeecCCCcceEEEEEcccC
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGSSLII----RDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
....+.+|++++|.|.+++.. ...+.||+.........+. +..+..... ..+|+....+.......|.|.+++
T Consensus 9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~ 88 (123)
T d1hxmb1 9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE 88 (123)
T ss_dssp SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence 345578899999999998643 4468999976554333232 222222221 134676666566667899999999
Q ss_pred CCCCeEEEEEeEE
Q psy8823 105 ETDAGYYRCQVII 117 (386)
Q Consensus 105 ~~d~G~Y~C~~~~ 117 (386)
.+|+|.|.|....
T Consensus 89 ~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 89 KQDIATYYCALWE 101 (123)
T ss_dssp GGGCEEEEEEEEE
T ss_pred cccCcEEEEeeeC
Confidence 9999999998653
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.73 E-value=4.5e-08 Score=67.29 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=54.0
Q ss_pred ccceeeecCCcEEEEEEEeeC---CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYA---QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
|....+.+|++|+|.|...+. ....+.||+.........+.............++.... ...++.|.|.+++.+|
T Consensus 7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~l~~~D 84 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK--SGNSASLTISGLQAED 84 (112)
T ss_dssp CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEECSCCGGG
T ss_pred CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC--CCCEeeEEeCcCcccc
Confidence 556678999999999997643 22358999966544332222211111111223333322 3457899999999999
Q ss_pred CeEEEEEeEE
Q psy8823 108 AGYYRCQVII 117 (386)
Q Consensus 108 ~G~Y~C~~~~ 117 (386)
+|.|.|....
T Consensus 85 sa~YyCa~~~ 94 (112)
T d1lgva1 85 EADYYCSSYD 94 (112)
T ss_dssp CEEEEEEEEC
T ss_pred CEEEEEeeec
Confidence 9999997653
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.72 E-value=2.9e-08 Score=68.87 Aligned_cols=87 Identities=16% Similarity=0.248 Sum_probs=58.3
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCc-eeE--EeccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGS-SLI--IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~-~~~--~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.+..+.+.+|++|+|.|.+.+.. ...+.||+.........+. ..... ... ...+++....+.....+.|.|.++
T Consensus 7 ~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l 86 (120)
T d1ypzf1 7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL 86 (120)
T ss_dssp SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred CCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence 33455577999999999976432 3458999976554333222 22222 111 123466666666777889999999
Q ss_pred CCCCCeEEEEEeE
Q psy8823 104 QETDAGYYRCQVI 116 (386)
Q Consensus 104 ~~~d~G~Y~C~~~ 116 (386)
+.+|+|.|.|...
T Consensus 87 ~~~Dsa~YyCA~~ 99 (120)
T d1ypzf1 87 EEEDEAIYYCSYG 99 (120)
T ss_dssp CGGGCSEEEEEEC
T ss_pred ccccceeEEEEEc
Confidence 9999999999754
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.72 E-value=4.4e-08 Score=67.40 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=55.6
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
|+..|...++.+|++|+|.|... .....+.||+.........+.. ........ ...++... ......++|.|.+
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~~-~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~ 79 (112)
T d1kgce1 2 VSQSPRYKVAKRGQDVALRCDPI-SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAE-RPEGSVSTLKIQR 79 (112)
T ss_dssp CEEECSEEEEETTCCEEEEEECC-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEE-CTTSSCEEEEESS
T ss_pred eEECCCeEEECCCCCEEEEEEEC-CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeE-CCcCCEEEEEECC
Confidence 34556777789999999999865 3345699999665443222221 11211111 11233322 2344567999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|+|.|.|.+.
T Consensus 80 ~~~~Dsa~YyCa~~ 93 (112)
T d1kgce1 80 TQQEDSAVYLCASS 93 (112)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred CCcCCCEEEEEeee
Confidence 99999999999875
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1.3e-08 Score=72.05 Aligned_cols=90 Identities=17% Similarity=0.334 Sum_probs=57.7
Q ss_pred cccccCCCcEEEEEEEEecCCC----eeEEEeCCeee------ee-ecCceeE----------EeeeeecCceeeeEEEE
Q psy8823 234 RLGQALQYDMDLECHVEAYPPP----AIVWIKEDTQQ------VL-TNNQHYS----------ISHFATADEFTDTTIRV 292 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~----~~~W~~~~~~~------~~-~~~~~~~----------~~~~~~~~~~~~~~L~i 292 (386)
.+.+.+|++++|.|.+...+.. .+.|++..... .+ ....... ..............|+|
T Consensus 13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I 92 (124)
T d1eaja_ 13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV 92 (124)
T ss_dssp EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence 3567789999999998755432 58898632210 00 0000000 00000011123467999
Q ss_pred eecccCCCeEEEEEEEcCCCceeeEEEEEEE
Q psy8823 293 ITIEKRQYGSYICRAANKLGTSEKTVELFES 323 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 323 (386)
.+++.+|+|.|.|.+.+..|.....+.|.|.
T Consensus 93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 9999999999999999999988888888774
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.69 E-value=4.6e-08 Score=67.17 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=56.1
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccc-cCCceeEEe---ccceeeecCCCcceEEEEEcc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPI-STGSSLIIR---DSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~ 102 (386)
|+..|...++.+|++|+|.|... .....+.|||.........+.. ......... +.++.... .....++|.|.+
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~L~i~~ 79 (111)
T d2esve1 2 VTQFPSHSVIEKGQTVTLRCDPI-SGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAER-TGGTYSTLKVQP 79 (111)
T ss_dssp CEEECSEEEEETTCCEEEEEECC-TTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEEC-TTSSSEEEEESS
T ss_pred cEECCCEEEECCCCCEEEEEEEC-CCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEc-CCCCEEEEEECC
Confidence 34556777899999999999854 3345689999765443332222 222211111 22333322 234567899999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|+|.|.|.+.
T Consensus 80 ~~~~Dsa~YyCa~~ 93 (111)
T d2esve1 80 AELEDSGVYFCASS 93 (111)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cccCCCceEEEeee
Confidence 99999999999754
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.68 E-value=4.9e-08 Score=66.54 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=56.8
Q ss_pred cceeeecCCcEEEEEEEeeCC----CCcEEEEecCCcccccccc-c-cCCceeEE--eccceeeecCCCcceEEEEEccc
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLP-I-STGSSLII--RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
....+++|++|+|.|.+++.. ...+.|+|.......+.+. + ..+..... ..+|+.+..+.......|.|.++
T Consensus 8 g~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l 87 (120)
T d2agjh1 8 GPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNL 87 (120)
T ss_dssp CCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESC
T ss_pred CCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEee
Confidence 345578999999999987642 2457899965443222221 1 11111111 13578877777778889999999
Q ss_pred CCCCCeEEEEEe
Q psy8823 104 QETDAGYYRCQV 115 (386)
Q Consensus 104 ~~~d~G~Y~C~~ 115 (386)
+.+|++.|.|..
T Consensus 88 ~~eDsAvYyCAr 99 (120)
T d2agjh1 88 DPVDTATYYCAR 99 (120)
T ss_dssp CGGGCEEEEEEE
T ss_pred eeccceEEeeEe
Confidence 999999999963
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.68 E-value=3.1e-08 Score=68.19 Aligned_cols=89 Identities=12% Similarity=0.220 Sum_probs=56.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEecc--ceeeecCCCcceEEEEEcccC
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDS--RFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~ 104 (386)
++..|....+.+|++++|.|..+ .....+.||+.........+....+......+. ...........+..|.|.+++
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 80 (112)
T d2bnub1 2 VTQTPKFQVLKTGQSMTLQCAQD-MNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA 80 (112)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred eEECCCeEEECCCCCEEEEEEEE-CCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence 44556777899999999999875 334569999966554333332221111111111 112222234445689999999
Q ss_pred CCCCeEEEEEeE
Q psy8823 105 ETDAGYYRCQVI 116 (386)
Q Consensus 105 ~~d~G~Y~C~~~ 116 (386)
.+|+|.|.|...
T Consensus 81 ~~DsavYyCA~~ 92 (112)
T d2bnub1 81 PSQTSVYFCASS 92 (112)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEeec
Confidence 999999999765
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=8.8e-09 Score=70.21 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=53.2
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeee----ee--cCceeEEee--ee-ecCceeeeEEEEeecccCCCeEEEEE
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQV----LT--NNQHYSISH--FA-TADEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~----~~--~~~~~~~~~--~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
.+.+|++|.|.|.........+.|+|...... .. ......... +. ......+++|.|.+++.+|+|.|+|.
T Consensus 10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~ 89 (107)
T d1l6za1 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89 (107)
T ss_dssp SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence 46799999999974322244899998654310 00 000000000 00 00012457899999999999999999
Q ss_pred EEcCCC-ceeeEEEEEE
Q psy8823 307 AANKLG-TSEKTVELFE 322 (386)
Q Consensus 307 a~n~~g-~~~~~~~l~v 322 (386)
+.+..+ ..+.++.|.|
T Consensus 90 v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 90 MTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEETTEEECCCCEEECC
T ss_pred EEECCCCEEEEEEEEEE
Confidence 988864 4556677654
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.67 E-value=3.3e-08 Score=67.99 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=55.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeC------CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYA------QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
++..|....+.+|++|+|.|...+. ....+.||+.........+...........+.++... ......+|.|
T Consensus 4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~--~s~~~~~L~I 81 (113)
T d1q9ra1 4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS--GSGTDFTLTI 81 (113)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EETTEEEEEE
T ss_pred EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEe--CCCCeEeEEe
Confidence 3445667778999999999987532 1234899997654332222222111111112333333 3456779999
Q ss_pred cccCCCCCeEEEEEeE
Q psy8823 101 KDIQETDAGYYRCQVI 116 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~ 116 (386)
.+++.+|+|.|.|...
T Consensus 82 ~~l~~~Dsa~YyCA~~ 97 (113)
T d1q9ra1 82 TSVQAEDLAVYYCKQS 97 (113)
T ss_dssp SSCCGGGCEEEEEEEC
T ss_pred cccccCCCeEEEeccc
Confidence 9999999999999753
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=7.3e-08 Score=63.82 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=59.3
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+ ...+..|++|+|.|... .....+.|++++.......... ........+.|.+++.+|+|.|+
T Consensus 4 KPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~--------~~~~~~a~F~i~~v~~~~~G~Y~ 73 (95)
T d1olla1 4 KPFIWAEP-HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKP--------PERINKVKFYIPDMNSRMAGQYS 73 (95)
T ss_dssp CCEEEEES-CSEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSS--------CTTCCEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeeC-CCcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEcc--------CCCccEEEEEEeeeecCCCceEE
Confidence 45555544 34467899999999863 3345899999987632221111 01123567999999999999999
Q ss_pred EEEEcCCCcee--eEEEEEEE
Q psy8823 305 CRAANKLGTSE--KTVELFES 323 (386)
Q Consensus 305 C~a~n~~g~~~--~~~~l~v~ 323 (386)
|...++.+..+ ..+.|.|.
T Consensus 74 C~y~~~~~~S~~Sd~leL~VT 94 (95)
T d1olla1 74 CIYRVGELWSEPSNLLDLVVT 94 (95)
T ss_dssp EEEEETTEECCCCCCEEEEEE
T ss_pred EEeCCCCCccCCCCCEEEEEe
Confidence 99988766443 34566554
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.66 E-value=5.1e-08 Score=67.33 Aligned_cols=88 Identities=15% Similarity=0.293 Sum_probs=55.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccC-CceeEEe--ccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIST-GSSLIIR--DSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++..|....+.+|++|+|.|..+ .....+.||+.........+.... ....... ..++.. .......++|.|.++
T Consensus 2 VtQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~~ 79 (114)
T d1ogae1 2 ITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSV-SREKKESFPLTVTSA 79 (114)
T ss_dssp EECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEE-CCSSTTBCCEEECSC
T ss_pred cEEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEE-EcccCCeEEEEECcC
Confidence 34446667799999999999975 344568999977654333222211 1111111 112222 223345668999999
Q ss_pred CCCCCeEEEEEeE
Q psy8823 104 QETDAGYYRCQVI 116 (386)
Q Consensus 104 ~~~d~G~Y~C~~~ 116 (386)
+.+|+|.|.|...
T Consensus 80 ~~~DSa~YyCa~~ 92 (114)
T d1ogae1 80 QKNPTAFYLCASS 92 (114)
T ss_dssp CSCCCEEEEEEEE
T ss_pred CcCCceeEEEeec
Confidence 9999999999765
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=6.3e-08 Score=64.06 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=58.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...|.. .|..|++|+|.|.........+.|+|++...... ... ......+.|.+
T Consensus 4 PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~-----------~~~---------~~~~a~F~l~~ 62 (96)
T d1ucta2 4 GKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-----------HQS---------GEHPANFSLGP 62 (96)
T ss_dssp CCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-----------EEE---------CSSSEEEECCS
T ss_pred CCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE-----------EcC---------CCcccEEEEec
Confidence 46788887754 6899999999998643344568999987532110 000 01224789999
Q ss_pred cCCCCCeEEEEEeEEccc----ceeeeEEEEEE
Q psy8823 103 IQETDAGYYRCQVIIGIN----NKISAEVDLQV 131 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v 131 (386)
++.+|+|.|+|....... ...+..+.|.|
T Consensus 63 v~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL~V 95 (96)
T d1ucta2 63 VDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV 95 (96)
T ss_dssp CCGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred cccccCcEEEEEEEcCCCCCCccCCCCCEEEEE
Confidence 999999999998764321 23355555554
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.66 E-value=4.5e-08 Score=67.55 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=55.5
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEe---ccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++..|...++.+|++|+|.|.... ....+.||+.........+........... ..++... .....+.+|.|.++
T Consensus 2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~~ 79 (113)
T d2ntsp1 2 VTQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGR-QFSNSRSEMNVSTL 79 (113)
T ss_dssp CEEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEE-ECTTSCEEEEECSC
T ss_pred eEeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeec-cCcCCeeEEEECCC
Confidence 344566777999999999998653 335689999654433332222111111111 1222222 23345679999999
Q ss_pred CCCCCeEEEEEeEE
Q psy8823 104 QETDAGYYRCQVII 117 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~ 117 (386)
+.+|+|.|.|.+..
T Consensus 80 ~~~Dsa~YyCA~~~ 93 (113)
T d2ntsp1 80 ELGDSALYLCASSL 93 (113)
T ss_dssp CGGGCEEEEEEEES
T ss_pred CcccceeeeeeeeC
Confidence 99999999997753
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=4.5e-08 Score=68.09 Aligned_cols=86 Identities=16% Similarity=0.242 Sum_probs=55.5
Q ss_pred ccceeeecCCcEEEEEEEeeCCCC---cEEEEecCCcccccccc--ccCCceeEEeccceeeecCCCcceEEEEEcccCC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQDY---PVIWMKVDRNKVTEPLP--ISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~~---~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
|....+.+|+.|+|.|........ .+.|||.........+. ...+... ....+.....+.....++|.|.+++.
T Consensus 6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~l~~ 84 (118)
T d1i8lc_ 6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNEL-TFLDDSICTGTSSGNQVNLTIQGLRA 84 (118)
T ss_dssp CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCC-CCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEe-cccCCcEEeEcCCCCEEEEEeecccc
Confidence 455668899999999998643322 48899977654332221 1111111 11222333445556678999999999
Q ss_pred CCCeEEEEEeEE
Q psy8823 106 TDAGYYRCQVII 117 (386)
Q Consensus 106 ~d~G~Y~C~~~~ 117 (386)
+|+|.|.|.+..
T Consensus 85 ~Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 85 MDTGLYICKVEL 96 (118)
T ss_dssp GGCEEEEEEEEE
T ss_pred CCCEEEEEeEec
Confidence 999999998763
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.65 E-value=7e-08 Score=64.81 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=60.9
Q ss_pred eeccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCccccccc-ccc--CCceeEEe--ccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPL-PIS--TGSSLIIR--DSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~-~~~--~~~~~~~~--~~~~~~~~~~~~~~~~L~i~ 101 (386)
.++....+++|++++|.|.+++... ..+.|+|.......+.+ .+. .+...... .+|+.+..+...+...|.|.
T Consensus 5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~ 84 (118)
T d2jelh1 5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA 84 (118)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence 3456677899999999999987643 45899997665432222 111 12222111 35777887888888899999
Q ss_pred ccCCCCCeEEEEE
Q psy8823 102 DIQETDAGYYRCQ 114 (386)
Q Consensus 102 ~~~~~d~G~Y~C~ 114 (386)
+++.+|++.|.|.
T Consensus 85 sL~~eDTAvYYCA 97 (118)
T d2jelh1 85 RLTSEDSAIYYCA 97 (118)
T ss_dssp SCCGGGCEEEEEE
T ss_pred ccccCcceeeeEE
Confidence 9999999999994
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=5.8e-08 Score=65.12 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=57.7
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+. ..+..|++|+|.|... .+...+.|++++.......... ..........+.|.+++.+|+|.|+
T Consensus 7 kPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~------~~~~~~~~a~F~l~~vt~~~~G~Y~ 78 (99)
T d1ucta1 7 MPFISAKSS-PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRR------LKFWNETDPEFVIDHMDANKAGRYQ 78 (99)
T ss_dssp CCCEEESSC-SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEE------CC----CCCEEEECSCCGGGCEEEE
T ss_pred CCEEEecCC-CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceecccc------ccCCCCceEEEEecCCCHHHCceEE
Confidence 455665543 4577899999999863 3455899998765411111110 0011113567899999999999999
Q ss_pred EEEEcCCCceee--EEEEEE
Q psy8823 305 CRAANKLGTSEK--TVELFE 322 (386)
Q Consensus 305 C~a~n~~g~~~~--~~~l~v 322 (386)
|...++.+..+. .+.|.|
T Consensus 79 C~y~~~~~~S~~Sdpl~L~V 98 (99)
T d1ucta1 79 CQYRIGHYRFRYSDTLELVV 98 (99)
T ss_dssp EEEEETTTEEEECCCEEEEE
T ss_pred EEEECCCcccCCCCCEEEEe
Confidence 999998765443 355544
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.65 E-value=7e-08 Score=64.73 Aligned_cols=85 Identities=25% Similarity=0.427 Sum_probs=59.7
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc--CCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS--TGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+++|++++|.|.+++.. ...+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~ 85 (118)
T d1nlbh1 6 QSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINS 85 (118)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeee
Confidence 44556789999999999998754 3458999976543322221 11 1121111 2457778777778888999999
Q ss_pred cCCCCCeEEEEE
Q psy8823 103 IQETDAGYYRCQ 114 (386)
Q Consensus 103 ~~~~d~G~Y~C~ 114 (386)
++.+|++.|.|.
T Consensus 86 L~~eDtAvYYCA 97 (118)
T d1nlbh1 86 LKNEDTATYFCA 97 (118)
T ss_dssp CCGGGCEEEEEE
T ss_pred cccCcceEEEEe
Confidence 999999999994
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.65 E-value=1.4e-07 Score=62.79 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=56.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...|.. .|..|++|+|.|... .....+.|+|++...... ... .........+.|..
T Consensus 5 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~-----------~~~------~~~~~~~~~f~~~~ 65 (99)
T d1nkra2 5 EKPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERR-----------LPA------GPKVNGTFQADFPL 65 (99)
T ss_dssp CCCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEE-----------EEC------EEEETTEEEEEEEE
T ss_pred CCCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccE-----------EEc------cccCCccEEEEEec
Confidence 46888888754 578999999999875 456679999987543110 000 00111233567778
Q ss_pred cCCCCCeEEEEEeEEccc----ceeeeEEEEEE
Q psy8823 103 IQETDAGYYRCQVIIGIN----NKISAEVDLQV 131 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v 131 (386)
+...|+|.|+|....... ...+..+.|.|
T Consensus 66 ~~~~~~G~Y~C~y~~~~~p~~wS~~SdpLeL~V 98 (99)
T d1nkra2 66 GPATHGGTYRCFGSFHDSPYEWSKSSDPLLVSV 98 (99)
T ss_dssp EECCSCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred cccccCEEEEEEeecCCCCCCccCCCCCEEEEE
Confidence 888999999998654322 22344555544
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.5e-08 Score=69.05 Aligned_cols=80 Identities=18% Similarity=0.371 Sum_probs=48.9
Q ss_pred eeeecCCcEEEEEEEeeCCC----CcEEEEecCCccccccccccCCceeEEe--ccceeeecCCCcceEEEEEcccCCCC
Q psy8823 34 QIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPLPISTGSSLIIR--DSRFAIRYDTASSTYTLLVKDIQETD 107 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d 107 (386)
..+..|++|+|+|.+..... ..+.|.+++..+ .....+...... ..+.... ..++.+|.|.+++.+|
T Consensus 4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v----~~~~~~~~~~~~~~~~r~~~~---~~g~~sL~I~~v~~~D 76 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMV----LTMMSGDMNIWPEYKNRTIFD---ITNNLSIVILALRPSD 76 (105)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEE----EEEETTEEEECHHHHTTEEEE---STTTTEEEECSCCGGG
T ss_pred EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEE----EEEEeccceeecceeeeeeec---cCCcEEEEECcCChHH
Confidence 34789999999998763322 236777755332 111222211111 1233322 2245699999999999
Q ss_pred CeEEEEEeEEccc
Q psy8823 108 AGYYRCQVIIGIN 120 (386)
Q Consensus 108 ~G~Y~C~~~~~~~ 120 (386)
+|.|.|.+.+...
T Consensus 77 ~G~Y~C~V~~~~~ 89 (105)
T d1dr9a1 77 EGTYECVVLKYEK 89 (105)
T ss_dssp CEEEEEEEEECCT
T ss_pred CeEEEEEEEeCCC
Confidence 9999999986443
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=1.1e-07 Score=63.63 Aligned_cols=85 Identities=28% Similarity=0.355 Sum_probs=60.7
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCccccccc-cccCCceeEEe---ccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPL-PISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+.....+++|++++|.|.++|... ..+.|+|.......+.+ .+..+...... .+|+.+..+...+...|.|.++
T Consensus 6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL 85 (117)
T d1c5db1 6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL 85 (117)
T ss_dssp EECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSC
T ss_pred eECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccc
Confidence 345566899999999999987643 45899997655433322 12222222211 3588888888888899999999
Q ss_pred CCCCCeEEEEE
Q psy8823 104 QETDAGYYRCQ 114 (386)
Q Consensus 104 ~~~d~G~Y~C~ 114 (386)
+.+|++.|.|.
T Consensus 86 ~~eDtAvYYCA 96 (117)
T d1c5db1 86 QTEDTAIYFCT 96 (117)
T ss_dssp CGGGCEEEEEE
T ss_pred ccCcceEEEEe
Confidence 99999999995
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=98.64 E-value=1.3e-07 Score=63.93 Aligned_cols=85 Identities=22% Similarity=0.320 Sum_probs=60.2
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-ccCCceeEEe---ccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-ISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+....++++|++++|.|.+++... ..+.|+|.......+.+. +..+...... .+|+.+..+...+...|.|.++
T Consensus 6 esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l 85 (120)
T d1dn0b1 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (120)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred eECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccc
Confidence 345566899999999999997643 458999976554333221 2222222111 3578888777888889999999
Q ss_pred CCCCCeEEEEE
Q psy8823 104 QETDAGYYRCQ 114 (386)
Q Consensus 104 ~~~d~G~Y~C~ 114 (386)
+.+|++.|.|.
T Consensus 86 ~~eDtA~YYCA 96 (120)
T d1dn0b1 86 TAADTAVYYCA 96 (120)
T ss_dssp CGGGCEEEEEE
T ss_pred ccccccEEEEE
Confidence 99999999994
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=98.64 E-value=1.2e-07 Score=63.63 Aligned_cols=87 Identities=17% Similarity=0.316 Sum_probs=60.8
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cccCCceeEEe---ccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
++....+++|++++|.|.+++.. ...+.|+|.......+.+ .+......... .+|+.+..+...+...|.|.++
T Consensus 6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L 85 (116)
T d7fabh1 6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV 85 (116)
T ss_dssp EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc
Confidence 34566689999999999998754 345899997655432222 11222221111 3577787777888899999999
Q ss_pred CCCCCeEEEEEeE
Q psy8823 104 QETDAGYYRCQVI 116 (386)
Q Consensus 104 ~~~d~G~Y~C~~~ 116 (386)
+.+|++.|.|...
T Consensus 86 ~~eDtAvYyCAr~ 98 (116)
T d7fabh1 86 TAADTAVYYCARN 98 (116)
T ss_dssp CGGGCEEEEEEEE
T ss_pred ccccceEEEeeee
Confidence 9999999999643
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.1e-07 Score=65.06 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=56.0
Q ss_pred ccCCCcEEEEEEEEe-cCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 237 QALQYDMDLECHVEA-YPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g-~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
+.+|+.++|.|.+.+ +|.+ .+.|++++..+....... ...........+.|++.....+|+..|+|.|+|..+.
T Consensus 13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~---~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~ 89 (109)
T d1vcaa1 13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE---DADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 89 (109)
T ss_dssp EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCS---CCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccc---ccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence 568999999999875 6654 689999988732211110 0111122234567788776777777899999999754
Q ss_pred e-------eeEEEEEEEecC
Q psy8823 314 S-------EKTVELFESIIP 326 (386)
Q Consensus 314 ~-------~~~~~l~v~~~p 326 (386)
. +.+..|.|.+.|
T Consensus 90 ~~~~~~~~~t~~~L~V~~~P 109 (109)
T d1vcaa1 90 MDSVPTVRQAVKELQVYISP 109 (109)
T ss_dssp CTTSCSEEEEEEECCEECCC
T ss_pred ccccccccceeEEeEEEeCC
Confidence 3 345567776554
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.64 E-value=2.1e-07 Score=62.80 Aligned_cols=86 Identities=22% Similarity=0.423 Sum_probs=60.7
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccC-CceeEEe--ccceeeecCCCcceEEEEEcccC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IST-GSSLIIR--DSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
.....+++|++++|.|.+++.. ...+.|+|.......+.+. +.. +...... .+|+.+..+...+...|.|.+++
T Consensus 6 sg~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~ 85 (119)
T d1kxvc_ 6 SGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLK 85 (119)
T ss_dssp ECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCC
T ss_pred ECCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCC
Confidence 3456689999999999998754 3448899976543322221 222 2221111 35788888888888999999999
Q ss_pred CCCCeEEEEEeE
Q psy8823 105 ETDAGYYRCQVI 116 (386)
Q Consensus 105 ~~d~G~Y~C~~~ 116 (386)
.+|++.|.|...
T Consensus 86 ~eDtA~YYCAr~ 97 (119)
T d1kxvc_ 86 PDDTAMYYCKPS 97 (119)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCCcceEeeeec
Confidence 999999999654
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.64 E-value=8.2e-08 Score=65.17 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=60.7
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+++|++++|.|.+++.. ...+.|+|.......+.+ .+. ....... ..+|+.+..+...+...|.|.+
T Consensus 6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~ 85 (120)
T d1pg7x1 6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVR 85 (120)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccc
Confidence 45566789999999999998654 345899997655433322 112 2221111 1357777777778888999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 l~~eDtA~YYCAr~ 99 (120)
T d1pg7x1 86 LTSNDSAVYYCARE 99 (120)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCCCcceEEEeeec
Confidence 99999999999743
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2.3e-08 Score=67.00 Aligned_cols=75 Identities=11% Similarity=0.223 Sum_probs=48.1
Q ss_pred cccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEee----------eeecCceeeeEEEEeecccCCCeEEEE
Q psy8823 236 GQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISH----------FATADEFTDTTIRVITIEKRQYGSYIC 305 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~L~i~~~~~~d~G~Y~C 305 (386)
...+|++|+|.|.........+.|++......+.......... ........+.+|.|.+++.+|+|.|.|
T Consensus 5 ~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C 84 (97)
T d2nxyb1 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC 84 (97)
T ss_dssp EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred EEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence 3568999999999876666689999865542222111111100 001111234579999999999999999
Q ss_pred EEEcC
Q psy8823 306 RAANK 310 (386)
Q Consensus 306 ~a~n~ 310 (386)
.+.+.
T Consensus 85 ~v~~~ 89 (97)
T d2nxyb1 85 EVEDQ 89 (97)
T ss_dssp EETTE
T ss_pred EEecC
Confidence 99653
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.6e-07 Score=61.59 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=57.4
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...|. .+|..|++|+|.|... .....+.|+|++.... ..... ....+.+.|.+
T Consensus 3 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~-----------~~~~~---------~~~~a~F~i~~ 60 (93)
T d1olla2 3 DTPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSH-----------VQRGY---------GKVQAEFPLGP 60 (93)
T ss_dssp CCCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCE-----------EEEEE---------CSSEEEEEEEE
T ss_pred CCCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccc-----------eeecC---------CCceeEEEecc
Confidence 4678888775 4588999999999975 4556789999775421 00000 12345799999
Q ss_pred cCCCCCeEEEEEeEEcc--cceeeeEEEEEE
Q psy8823 103 IQETDAGYYRCQVIIGI--NNKISAEVDLQV 131 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v 131 (386)
++.+|+|.|+|...... ....+..+.|.|
T Consensus 61 v~~~~~G~Y~C~~~~~~~~wS~~SdpLeL~V 91 (93)
T d1olla2 61 VTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV 91 (93)
T ss_dssp CCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred cChhcCceEEEEeECCCCCcCCCCCCEEEEe
Confidence 99999999999754321 123344455544
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.62 E-value=1e-07 Score=63.98 Aligned_cols=87 Identities=22% Similarity=0.386 Sum_probs=61.2
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc--CCcee--EEeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS--TGSSL--IIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++...++++|++++|.|.+++.. ...+.|+|.......+.+ .+. .+... ....+|+.+..+...+...|.|.+
T Consensus 6 esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~ 85 (117)
T d1iqdb1 6 QSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSS 85 (117)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecc
Confidence 44566789999999999998753 345899996654332222 111 12211 113467888888888888999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCA~~ 99 (117)
T d1iqdb1 86 LRSDDTAVYYCAVP 99 (117)
T ss_dssp CCGGGCEEEEEEEC
T ss_pred cCcCcceEEEEeEc
Confidence 99999999999753
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.62 E-value=2.6e-07 Score=60.93 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=58.0
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEccc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+|.+...| ..+|..|++|+|.|... .....+.++|++...... +...........+.+.|.++
T Consensus 2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~---------------~~~~~~~~~~~~a~F~l~~v 64 (96)
T d1nkra1 2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTL---------------RLIGEHHDGVSKANFSISRM 64 (96)
T ss_dssp CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEE---------------EEECEEETTEEEEEEEESSC
T ss_pred CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCce---------------eeeeeecCCceEEEEEEccc
Confidence 57777776 45588999999999975 445668899977542100 00001111123457999999
Q ss_pred CCCCCeEEEEEeEEcc----cceeeeEEEEEE
Q psy8823 104 QETDAGYYRCQVIIGI----NNKISAEVDLQV 131 (386)
Q Consensus 104 ~~~d~G~Y~C~~~~~~----~~~~~~~~~l~v 131 (386)
+..|+|.|+|...... ....+..+.|.|
T Consensus 65 ~~~~~G~Y~C~y~~~~~p~~wS~pSdpLeL~V 96 (96)
T d1nkra1 65 TQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVI 96 (96)
T ss_dssp CGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEE
T ss_pred CcccCeEEEEEEEcCCCCCcccCCCCCEEEEC
Confidence 9999999999876432 133355555543
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=98.62 E-value=1.4e-07 Score=63.28 Aligned_cols=85 Identities=22% Similarity=0.296 Sum_probs=59.8
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCceeEE---eccceeeecCCCcceEEEEEcccC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGSSLII---RDSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
....++++|++++|.|.++|.. ...+.|+|.......+.+. +........ ..+|+.+..+...+...|.|.+++
T Consensus 7 sG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~ 86 (116)
T d1a2yb_ 7 SGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLH 86 (116)
T ss_dssp ECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred ECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeee
Confidence 4456689999999999999754 3458899976544322221 121221111 135777877888888899999999
Q ss_pred CCCCeEEEEEe
Q psy8823 105 ETDAGYYRCQV 115 (386)
Q Consensus 105 ~~d~G~Y~C~~ 115 (386)
.+|++.|.|.-
T Consensus 87 ~eDTAvYYCAr 97 (116)
T d1a2yb_ 87 TDDTARYYCAR 97 (116)
T ss_dssp GGGCEEEEEEE
T ss_pred eccceEEEEEE
Confidence 99999999964
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.62 E-value=6.4e-08 Score=66.70 Aligned_cols=88 Identities=14% Similarity=0.260 Sum_probs=55.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCC-ceeEEe--ccceeeecCCCcceEEEEEccc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG-SSLIIR--DSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
|+..|...++.+|++|+|.|... .....+.|||.........+....+ ...... ..++... ......+.|.|.++
T Consensus 3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~ 80 (113)
T d1j8he1 3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVS-REKKERFSLILESA 80 (113)
T ss_dssp EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEE-CSSTTBCEEEESSC
T ss_pred EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEE-eccCcEeeeEeccC
Confidence 44556677789999999999864 3345688999665433332222211 111111 1222222 23345578999999
Q ss_pred CCCCCeEEEEEeE
Q psy8823 104 QETDAGYYRCQVI 116 (386)
Q Consensus 104 ~~~d~G~Y~C~~~ 116 (386)
+.+|+|.|.|.+.
T Consensus 81 ~~~Dsa~YyCa~~ 93 (113)
T d1j8he1 81 STNQTSMYLCASS 93 (113)
T ss_dssp CGGGCEEEEEEEE
T ss_pred ccCCcccEEeeEc
Confidence 9999999999875
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.61 E-value=9.2e-08 Score=64.36 Aligned_cols=85 Identities=22% Similarity=0.380 Sum_probs=59.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc--CCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS--TGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++...++++|++++|.|.+++.. ...+.|++.......+.+. +. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~ 85 (115)
T d1f3dh1 6 QSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNS 85 (115)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeee
Confidence 44556689999999999998653 3458999975543322221 11 1222211 1357777777777788999999
Q ss_pred cCCCCCeEEEEE
Q psy8823 103 IQETDAGYYRCQ 114 (386)
Q Consensus 103 ~~~~d~G~Y~C~ 114 (386)
++.+|++.|.|.
T Consensus 86 l~~eDtAvYYCA 97 (115)
T d1f3dh1 86 LTFEDSAVYYCA 97 (115)
T ss_dssp CCGGGCEEEEEE
T ss_pred cCcCCcEEEEEe
Confidence 999999999995
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.61 E-value=1.3e-07 Score=64.25 Aligned_cols=86 Identities=21% Similarity=0.365 Sum_probs=58.3
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++...++++|++|+|.|.+++.. ...+.|+|.......+.+. +. ....... ..+|+.+..+...+...|.|.+
T Consensus 6 esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~ 85 (119)
T d1qnzh_ 6 QSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSR 85 (119)
T ss_dssp EECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEE
T ss_pred eECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecc
Confidence 34455788999999999988653 3458999975443222221 11 1111111 1357777777777788999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|..
T Consensus 86 L~~eDsAvYYCA~ 98 (119)
T d1qnzh_ 86 LTSDDSAVYYCAI 98 (119)
T ss_dssp ECGGGCEEEEEEE
T ss_pred cCccceeEEEEEE
Confidence 9999999999954
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.7e-07 Score=65.11 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=53.0
Q ss_pred cceeeecCCcEEEEEEEeeCCCC--c-EEEEecCCccccccccccCC--ceeEEeccceeeecCCCcceEEEEEcccCCC
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDY--P-VIWMKVDRNKVTEPLPISTG--SSLIIRDSRFAIRYDTASSTYTLLVKDIQET 106 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~--~-v~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 106 (386)
.+..+.+|+.|+|.|...+.... . +.|++..............+ ........+++...+......+|.|.+++.+
T Consensus 8 ~p~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 87 (118)
T d1yjdc1 8 SPMLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVN 87 (118)
T ss_dssp CSEEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGG
T ss_pred CCcEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcc
Confidence 34557789999999998744322 2 34555433322211111111 1112233556666666667889999999999
Q ss_pred CCeEEEEEeEE
Q psy8823 107 DAGYYRCQVII 117 (386)
Q Consensus 107 d~G~Y~C~~~~ 117 (386)
|+|.|.|.+..
T Consensus 88 DsavYyCa~~~ 98 (118)
T d1yjdc1 88 QTDIYFCKIEV 98 (118)
T ss_dssp GCEEEEEEEEE
T ss_pred cCeEEEEEEec
Confidence 99999997653
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.60 E-value=1.1e-07 Score=63.70 Aligned_cols=86 Identities=21% Similarity=0.338 Sum_probs=61.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CC-ceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TG-SSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~-~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. +. .+ ..... ..+|+.+..+...+...|.|.+
T Consensus 6 esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~ 85 (117)
T d1jpth1 6 ESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNS 85 (117)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccc
Confidence 34566789999999999999764 3458999976554322221 11 11 21111 2467888888888888999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|.-
T Consensus 86 L~~eDTAvYYCAr 98 (117)
T d1jpth1 86 LRAEDTAVYYCAR 98 (117)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCCceEEEEee
Confidence 9999999999954
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.59 E-value=1.3e-07 Score=63.11 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=59.7
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCceeE-E--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGSSLI-I--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~~~-~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. +. .+.... . ..+|+.+..+...+...|.|.+
T Consensus 6 eSG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~ 85 (114)
T d1indh1 6 ESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNS 85 (114)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeee
Confidence 34556689999999999998754 3458899976544322221 21 222111 1 1357888777788888999999
Q ss_pred cCCCCCeEEEEE
Q psy8823 103 IQETDAGYYRCQ 114 (386)
Q Consensus 103 ~~~~d~G~Y~C~ 114 (386)
++.+|++.|.|.
T Consensus 86 L~~eDtAvYYCA 97 (114)
T d1indh1 86 LRSEDTALYFCA 97 (114)
T ss_dssp CCGGGCEEEEEE
T ss_pred eccCcccEEEEC
Confidence 999999999995
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.59 E-value=1.1e-07 Score=64.18 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=61.4
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCccccccc-ccc--CCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPL-PIS--TGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~-~~~--~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++...++++|++++|.|.+++... ..+.|+|.......+.+ .+. .+..... ..+|+.+..+...+...|.|.+
T Consensus 7 ~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~ 86 (122)
T d1vgeh1 7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS 86 (122)
T ss_dssp ECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence 456777999999999999987643 45899997654332222 111 1222111 2367778778888888999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 87 L~~eDtA~YYCAr~ 100 (122)
T d1vgeh1 87 LRPEDTAVYYCARD 100 (122)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCCCcceEEEEeec
Confidence 99999999999643
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.59 E-value=2.2e-07 Score=61.96 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=61.1
Q ss_pred eeccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCccccccc-ccc-CCceeEEe---ccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPL-PIS-TGSSLIIR---DSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~-~~~-~~~~~~~~---~~~~~~~~~~~~~~~~L~i~ 101 (386)
.++....+++|+++.|.|.+++... ..+.|+|......-+.+ .+. .+...... .+|+.+..+...+...|.|.
T Consensus 5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~ 84 (116)
T d1mjuh1 5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (116)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence 3456677899999999999997543 45899996654432222 111 22222212 34788877888888999999
Q ss_pred ccCCCCCeEEEEEe
Q psy8823 102 DIQETDAGYYRCQV 115 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~ 115 (386)
+++.+|++.|.|.-
T Consensus 85 sL~~eDtAvYYCAr 98 (116)
T d1mjuh1 85 SLTSDDSAVYYCAN 98 (116)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccCCCCceEEEEcc
Confidence 99999999999953
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.59 E-value=6.4e-08 Score=66.56 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=55.5
Q ss_pred eeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccC-CceeEEecc-ceeeecCCCcceEEEEEcccCC
Q psy8823 28 SYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIST-GSSLIIRDS-RFAIRYDTASSTYTLLVKDIQE 105 (386)
Q Consensus 28 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~ 105 (386)
...|...++.+|++|+|.|... .....+.||+.........+.... ......... ..............|.|.+++.
T Consensus 2 ~QsP~~~~~~~G~svtL~C~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 80 (112)
T d2cdeb1 2 YQTPRYLVIGTGKKITLECSQT-MGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP 80 (112)
T ss_dssp EEECSEEEEETTCCBCCEEEET-TCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred EECCCEEEECCCCCEEEEEEEe-CCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence 3456667789999999999875 334568999976654333332221 111111111 1111222334566899999999
Q ss_pred CCCeEEEEEeEE
Q psy8823 106 TDAGYYRCQVII 117 (386)
Q Consensus 106 ~d~G~Y~C~~~~ 117 (386)
+|+|.|.|.+..
T Consensus 81 ~Dsa~YyCA~~~ 92 (112)
T d2cdeb1 81 SHTSQYLCASSE 92 (112)
T ss_dssp TTCSEEEEEEEC
T ss_pred cccccEEEEEec
Confidence 999999997763
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.58 E-value=1.4e-07 Score=63.55 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=60.9
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|+++.|.|.+++.. ...+.|+|.......+.+ .+. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~s 85 (119)
T d1rz7h1 6 QSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSS 85 (119)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeec
Confidence 45566789999999999999764 345899997654332222 111 2222111 1358888888888888999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|..
T Consensus 86 L~~eDTAvYYCAr 98 (119)
T d1rz7h1 86 LRSEDTAVYYCAA 98 (119)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCcccceEEEEee
Confidence 9999999999954
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.58 E-value=1.4e-07 Score=63.47 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=60.3
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc--CCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS--TGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~--~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+++|++++|.|.+++.. ...+.|+|.......+.+ .+. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~s 85 (119)
T d1eapb1 6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNS 85 (119)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeec
Confidence 45566789999999999998764 345899997654432222 111 1222211 1357778777778888999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|..
T Consensus 86 L~~eDTAvYYCAr 98 (119)
T d1eapb1 86 LTSEDSAVYFCKR 98 (119)
T ss_dssp CCGGGCEEEEEEE
T ss_pred ccCCcceEEEEEE
Confidence 9999999999953
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.58 E-value=1.7e-07 Score=63.04 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=61.0
Q ss_pred eeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-CCceeE---EeccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-TGSSLI---IRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.++....+++|++++|.|.+++.. ...+.|+|.......+.+ .+. .+.... ...+|+.+..+...+...|.|.
T Consensus 4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~ 83 (117)
T d1um5h1 4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELS 83 (117)
T ss_dssp EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccc
Confidence 345667789999999999998754 345899997654432222 111 222111 1235778877778888899999
Q ss_pred ccCCCCCeEEEEEe
Q psy8823 102 DIQETDAGYYRCQV 115 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~ 115 (386)
+++.+|++.|.|..
T Consensus 84 sL~~eDtAvYYCAr 97 (117)
T d1um5h1 84 SLTSEDSAVYYCAR 97 (117)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccCCCcceEEEEee
Confidence 99999999999964
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.57 E-value=1.2e-07 Score=63.76 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=59.7
Q ss_pred eeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCc-eeEE--eccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGS-SLII--RDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~-~~~~--~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.++...++++|++++|.|.++|.. ...+.|+|.......+.+. +. .+. .... ..+|+.+..+...+...|.|.
T Consensus 5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~ 84 (117)
T d1mfah1 5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS 84 (117)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence 455677789999999999998754 3448899965443222221 11 111 1111 134677777777888899999
Q ss_pred ccCCCCCeEEEEEe
Q psy8823 102 DIQETDAGYYRCQV 115 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~ 115 (386)
+++.+|++.|.|.-
T Consensus 85 ~L~~eDtAvYYCAr 98 (117)
T d1mfah1 85 SLTSEDSAVYYCTR 98 (117)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ccCCCcceEEEEec
Confidence 99999999999953
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.57 E-value=2.1e-07 Score=62.58 Aligned_cols=87 Identities=21% Similarity=0.364 Sum_probs=60.9
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++... ..+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s 85 (118)
T d2fbjh1 6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK 85 (118)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred eECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccc
Confidence 345567899999999999987643 458999865543322221 11 1211111 1457888888888888999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCAr~ 99 (118)
T d2fbjh1 86 VRSEDTALYYCARL 99 (118)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCCCcceEEEeeEe
Confidence 99999999999654
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.57 E-value=9.2e-08 Score=65.77 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=57.6
Q ss_pred eeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCcccccccccc-CCceeEEe--ccceeeecCCCcceEEEEEcc
Q psy8823 26 TISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPIS-TGSSLIIR--DSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 26 ~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.++..|...++.+|++|+|.|.... ....+.||+.........+... ........ ..++.... .....++|.|.+
T Consensus 3 ~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~ 80 (113)
T d1nfdb1 3 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ-FDDYHSEMNMSA 80 (113)
T ss_dssp SCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEE-CTTSCEEEECCS
T ss_pred CEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEc-CCCCeEEEEecc
Confidence 3555677788999999999998653 3346999997765443333222 22222111 22443322 233457899999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|+|.|.|.+.
T Consensus 81 ~~~~Dsa~YyCa~~ 94 (113)
T d1nfdb1 81 LELEDSAMYFCASS 94 (113)
T ss_dssp CCGGGCEEECEEEE
T ss_pred cCcCCceeEEEEee
Confidence 99999999999765
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.57 E-value=2.9e-07 Score=62.90 Aligned_cols=86 Identities=23% Similarity=0.410 Sum_probs=60.9
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CC-ceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TG-SSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~-~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. +. .+ ..... ..+|+.+..+...+...|.|.+
T Consensus 6 eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~ 85 (135)
T d1ieha_ 6 ASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNS 85 (135)
T ss_dssp EECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEES
T ss_pred eECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEee
Confidence 34556689999999999998754 4458999976544333221 11 12 21111 2468888888888888999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|..
T Consensus 86 L~~eDTAvYYCAr 98 (135)
T d1ieha_ 86 LKSEDTAVYYCAK 98 (135)
T ss_dssp CCSSSCEEEEEEE
T ss_pred eCcccceeeEEEE
Confidence 9999999999964
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.56 E-value=1.5e-07 Score=63.76 Aligned_cols=87 Identities=24% Similarity=0.419 Sum_probs=60.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-CCceeE---EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-TGSSLI---IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+ .+. .+.... ...+|+.+..+...+...|.|.+
T Consensus 6 esG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~ 85 (123)
T d1mqkh_ 6 ESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSS 85 (123)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceee
Confidence 34556689999999999998754 345899997654332222 111 121111 12457777777777888999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCAr~ 99 (123)
T d1mqkh_ 86 LKSEDTAMYYCVRH 99 (123)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred eccCcccceeEEec
Confidence 99999999999643
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.56 E-value=1.9e-07 Score=63.58 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=61.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-C-CceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-T-GSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~-~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++...++++|++++|.|.+++.. ...+.|+|.......+.+. +. . +..... ..+|+.+..+...+...|.|.+
T Consensus 6 esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~s 85 (127)
T d2fx7h1 6 QSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNS 85 (127)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecc
Confidence 44566788999999999998754 4458999966554322221 11 1 111111 1457888888888889999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|.-.
T Consensus 86 L~~eDTavYYCAR~ 99 (127)
T d2fx7h1 86 LRPEDTAVYYCARE 99 (127)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCcccceEEEEeec
Confidence 99999999999644
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=98.56 E-value=1.7e-07 Score=63.44 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=59.6
Q ss_pred ccceeeecCCcEEEEEEEeeCC----CCcEEEEecCCcccccccc-c-cCCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ----DYPVIWMKVDRNKVTEPLP-I-STGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~----~~~v~W~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+....+++|++++|.|.+++.. ...+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|.|.+
T Consensus 7 sG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~s 86 (120)
T d1ai1h1 7 SGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLIS 86 (120)
T ss_dssp ECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESS
T ss_pred ECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceee
Confidence 4456688999999999998653 2347899976543322221 1 22222111 2368888888888888999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 87 L~~eDtAvYYCAr~ 100 (120)
T d1ai1h1 87 VTNEDTAMYYCSRE 100 (120)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred eeccceeEEEEEec
Confidence 99999999999643
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.55 E-value=1.7e-07 Score=63.67 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=59.8
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+++|++++|.|.+++.. ...+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~ 85 (121)
T d1j05b_ 6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS 85 (121)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence 45566789999999999998654 3458999976543222221 11 2222111 1357777777777788999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDtAvYYCAr~ 99 (121)
T d1j05b_ 86 LTSEDTAVYYCAPF 99 (121)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCcCcceEEEeEee
Confidence 99999999999643
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.55 E-value=2e-07 Score=62.46 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=60.1
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-c--cCCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-I--STGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~--~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+++|+++.|.|.+++.. ...+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~ 85 (117)
T d1jnhb1 6 QSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNS 85 (117)
T ss_dssp ECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccc
Confidence 44566789999999999999764 3458999966544322221 1 11111111 1357888878888888999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|..
T Consensus 86 L~~eDTAvYYCAr 98 (117)
T d1jnhb1 86 LTSEDSAVYSCSR 98 (117)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEEee
Confidence 9999999999954
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.55 E-value=1.3e-07 Score=62.44 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=60.0
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-ccC----CceeE--EeccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-IST----GSSLI--IRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~~----~~~~~--~~~~~~~~~~~~~~~~~~L~i 100 (386)
+.....+++|++++|.|.+++... ..+.|+|.......+.+. +.. +.... ...+|+.+..+...+...|.|
T Consensus 6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i 85 (109)
T d2ck0h1 6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQM 85 (109)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecc
Confidence 345667899999999999987543 458999976554322211 111 11111 113578888888888889999
Q ss_pred cccCCCCCeEEEEEe
Q psy8823 101 KDIQETDAGYYRCQV 115 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~ 115 (386)
.+++.+|++.|.|.-
T Consensus 86 ~sL~~eDTAvYYCAr 100 (109)
T d2ck0h1 86 NNLKTEDTGIYYCVR 100 (109)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred cCCCHhHCEEEEEEE
Confidence 999999999999963
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=7e-07 Score=60.88 Aligned_cols=80 Identities=11% Similarity=0.233 Sum_probs=53.9
Q ss_pred EeCCccEEEEEEeee-eCCC--eEEEEEcCeeeCCC--------CceEEeeeEEEECCCCCCCCeEEEEEEecCCCCc--
Q psy8823 147 VSEGQPVQLECFAGG-HPTP--RISWRRENNAILPT--------GGSIYRGSILKIPQITKEDRGTYYCVAENGVGKG-- 213 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-- 213 (386)
+.+|+.++|.|.+.+ .|.+ .++|++++..+... .........|.+.....++...|+|+|.+..+..
T Consensus 13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~ 92 (109)
T d1vcaa1 13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS 92 (109)
T ss_dssp EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence 679999999999954 5644 58999988765321 1112234567777666666669999999865431
Q ss_pred ----eeeeEEEEEEecc
Q psy8823 214 ----TRRNIAVEVEFAP 226 (386)
Q Consensus 214 ----~~~~~~l~v~~~p 226 (386)
......|.|+++|
T Consensus 93 ~~~~~~t~~~L~V~~~P 109 (109)
T d1vcaa1 93 VPTVRQAVKELQVYISP 109 (109)
T ss_dssp SCSEEEEEEECCEECCC
T ss_pred cccccceeEEeEEEeCC
Confidence 2345567887765
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=98.55 E-value=1.9e-07 Score=63.72 Aligned_cols=87 Identities=24% Similarity=0.354 Sum_probs=61.5
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CCceeE---EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TGSSLI---IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+....++++|++++|.|.+++.. ...+.|+|.......+.+. +. .+.... ...+|+.+..+...+...|+|.+
T Consensus 6 esG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~ 85 (127)
T d2fb4h1 6 QSGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDS 85 (127)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeee
Confidence 34556688999999999998754 3458999976554333221 11 222111 12467888888888889999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDTA~YYCAr~ 99 (127)
T d2fb4h1 86 LRPEDTGVYFCARD 99 (127)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred eeecceeEEEEEEe
Confidence 99999999999643
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=8.4e-08 Score=64.86 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=51.7
Q ss_pred cccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeE--EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 236 GQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYS--ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
....++.++|.|.+.|+.+. .+.|.++|.. +....... .....++.+...+.|.|..-..+.+..|+|.+.+..
T Consensus 15 ~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~--~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~ 92 (105)
T d1fp5a2 15 WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQ--LPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 92 (105)
T ss_dssp CSSSSCCEEEEEEEEEEBSSCCEEEEEETTEE--CCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTT
T ss_pred HHhcCCcEEEEEEEEeeeCCCcEEEEEECCEE--CCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence 33456789999999885433 8999999987 43322111 112223334456788888777777778999999976
Q ss_pred Ccee
Q psy8823 312 GTSE 315 (386)
Q Consensus 312 g~~~ 315 (386)
....
T Consensus 93 l~~~ 96 (105)
T d1fp5a2 93 ASPS 96 (105)
T ss_dssp STTT
T ss_pred CCCC
Confidence 5443
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.54 E-value=1.7e-07 Score=63.75 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=61.5
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-c-cCCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-I-STGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~-~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|.|.+
T Consensus 5 esG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~s 84 (124)
T d1zvya1 5 ESGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDS 84 (124)
T ss_dssp EECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecc
Confidence 34456688999999999998754 3458999976554333221 2 22222221 1367888888888889999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|..
T Consensus 85 L~~eDtAvYYCAr 97 (124)
T d1zvya1 85 VKSEDTAIYTCGA 97 (124)
T ss_dssp CCGGGCEEEEEEE
T ss_pred ccCCcceEEEEee
Confidence 9999999999964
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.53 E-value=2.4e-07 Score=62.86 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=61.4
Q ss_pred eeccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-cc--CCceeEE--eccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-IS--TGSSLII--RDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.++...++++|+++.|.|.+++... ..+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|.|.
T Consensus 5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~ 84 (124)
T d2b1hh1 5 EQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWS 84 (124)
T ss_dssp EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEES
T ss_pred eeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeee
Confidence 3455677899999999999997543 458999976554433221 11 1211111 136788888888888999999
Q ss_pred ccCCCCCeEEEEE
Q psy8823 102 DIQETDAGYYRCQ 114 (386)
Q Consensus 102 ~~~~~d~G~Y~C~ 114 (386)
+++.+|++.|.|.
T Consensus 85 ~L~~eDTA~YYCA 97 (124)
T d2b1hh1 85 SLKPSDTALYYCA 97 (124)
T ss_dssp SCCGGGCEEEEEE
T ss_pred ccccccceEEEEe
Confidence 9999999999995
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=3e-07 Score=61.21 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred EecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCC
Q psy8823 223 EFAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 223 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
+.+|.+.+.+. .....|+.++|.|.+.|+.+. .++|.+||.. +............++.+...+.| .+..++.
T Consensus 3 ~~~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~--v~~~~~~~~~~~~dgty~~~s~l---~v~~~~~ 76 (100)
T d1k5nb_ 3 QRTPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGER--IEKVEHSDLSFSKDWSFYLLYYT---EFTPTEK 76 (100)
T ss_dssp CBCCEEEEEES-SCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEE--CTTCEECCCEECTTSCEEEEEEE---EECCCSS
T ss_pred cCCCeeEEEcC-CcccCCCCEEEEEEECccCCCCcEEEEEECCEe--cCCccccceecCCCCcEEEEEEe---EECCCCC
Confidence 34555544321 234568899999999996444 7999999987 43322222222222222223334 3445667
Q ss_pred eEEEEEEEcCCCc
Q psy8823 301 GSYICRAANKLGT 313 (386)
Q Consensus 301 G~Y~C~a~n~~g~ 313 (386)
+.|+|.+.+....
T Consensus 77 ~~ytC~V~H~sl~ 89 (100)
T d1k5nb_ 77 DEYACRVNHVTLS 89 (100)
T ss_dssp CCEEEEEECTTCS
T ss_pred CEEEEEEEeCCCC
Confidence 7899999987543
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.53 E-value=2.5e-07 Score=62.36 Aligned_cols=85 Identities=22% Similarity=0.401 Sum_probs=59.8
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CC-ceeEE--eccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TG-SSLII--RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~-~~~~~--~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.....+++|++++|.|.+++.. ...+.|+|.......+.+. +. .+ ..... ..+|+.+..+...+...|.|.++
T Consensus 7 SG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L 86 (121)
T d2p49b1 7 SGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSL 86 (121)
T ss_dssp EECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSC
T ss_pred ECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeec
Confidence 3456689999999999998653 4558999976544322221 11 11 11111 23578888888888889999999
Q ss_pred CCCCCeEEEEEe
Q psy8823 104 QETDAGYYRCQV 115 (386)
Q Consensus 104 ~~~d~G~Y~C~~ 115 (386)
+.+|++.|.|..
T Consensus 87 ~~eDtAvYYCAr 98 (121)
T d2p49b1 87 KPEDTATYYCAA 98 (121)
T ss_dssp CGGGCEEEEEEE
T ss_pred cccceeEEeeec
Confidence 999999999964
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.52 E-value=4.3e-07 Score=62.06 Aligned_cols=88 Identities=16% Similarity=0.240 Sum_probs=61.6
Q ss_pred eeccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCccccccc-cc-cCCceeEE---eccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPL-PI-STGSSLII---RDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~-~~-~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+++...++++|++++|.|.+++... ..+.|+|.......+.+ .+ ........ ..+|+.+..+...+...|.|.
T Consensus 5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~ 84 (125)
T d1rihh1 5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLN 84 (125)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeee
Confidence 3456677899999999999987543 45899997655433322 11 12221111 135777877777888899999
Q ss_pred ccCCCCCeEEEEEeE
Q psy8823 102 DIQETDAGYYRCQVI 116 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~ 116 (386)
+++.+|++.|.|...
T Consensus 85 sL~~eDtAvYYCAR~ 99 (125)
T d1rihh1 85 SLTSEDSAVYYCARE 99 (125)
T ss_dssp SCCGGGCEEEEEEEE
T ss_pred ccCcccceEEEEeee
Confidence 999999999999643
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.52 E-value=2.1e-07 Score=63.63 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=61.9
Q ss_pred eeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-c--cCCceeEE--eccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-I--STGSSLII--RDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~--~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.++...++++|+++.|.|.+++.. ...+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|.|.
T Consensus 4 ~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~ 83 (130)
T d1rhhb1 4 EQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELT 83 (130)
T ss_dssp EECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred eccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEee
Confidence 455667789999999999998653 3458999976554322221 1 11221111 135788888888888899999
Q ss_pred ccCCCCCeEEEEEeE
Q psy8823 102 DIQETDAGYYRCQVI 116 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~ 116 (386)
+++.+|++.|.|.-.
T Consensus 84 ~L~~eDtAvYyCAr~ 98 (130)
T d1rhhb1 84 NLRSDDTAVYYCARD 98 (130)
T ss_dssp SCCGGGCEEEEEEEE
T ss_pred ccCCCCcEEEEEEee
Confidence 999999999999643
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=98.52 E-value=4e-07 Score=61.07 Aligned_cols=86 Identities=23% Similarity=0.411 Sum_probs=60.3
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-ccCCceeEEe---ccceeeecCCCcceEEEEEccc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-ISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. +..+...... .+|+.+..+...+...|.|.++
T Consensus 6 eSg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l 85 (118)
T d1lo4h1 6 ETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRL 85 (118)
T ss_dssp EECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSC
T ss_pred eECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccc
Confidence 34556689999999999999764 3458999976544322221 1222221111 3577777777888889999999
Q ss_pred CCCCCeEEEEEe
Q psy8823 104 QETDAGYYRCQV 115 (386)
Q Consensus 104 ~~~d~G~Y~C~~ 115 (386)
+.+|++.|.|.-
T Consensus 86 ~~eDtA~YyCAr 97 (118)
T d1lo4h1 86 RSEDTAIYYCAR 97 (118)
T ss_dssp CGGGCEEEEEEE
T ss_pred cCCcceEEEecc
Confidence 999999999964
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=98.52 E-value=4.5e-07 Score=60.93 Aligned_cols=86 Identities=21% Similarity=0.310 Sum_probs=60.5
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc--CCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS--TGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~ 85 (118)
T d1ct8b1 6 ESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSS 85 (118)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccc
Confidence 44567789999999999998754 3458999976554332221 11 1222211 1347777777788888999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|.-
T Consensus 86 L~~eDtAvYYCAr 98 (118)
T d1ct8b1 86 LTTEDSAIYYCAR 98 (118)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEEee
Confidence 9999999999954
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=98.52 E-value=2.6e-07 Score=62.79 Aligned_cols=87 Identities=24% Similarity=0.350 Sum_probs=61.2
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-c-cCCceeE---EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-I-STGSSLI---IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~-~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. + ..+.... ...+|+.+..+...+...|.|.+
T Consensus 6 eSg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~ 85 (126)
T d1dfbh1 6 ESGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNS 85 (126)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeee
Confidence 34556689999999999998754 3458999976554333221 1 1222111 12467888888888888999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDtavYYCAr~ 99 (126)
T d1dfbh1 86 LRAEDMALYYCVKG 99 (126)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred eccCcceEEEEEec
Confidence 99999999999643
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.52 E-value=3.3e-07 Score=62.30 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=60.9
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-cc-CCceeE-E--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-IS-TGSSLI-I--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~-~~~~~~-~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++...++++|+++.|.|.+++... ..+.|+|.......+.+. +. .+.... . ..+|+.+..+...+...|.|.+
T Consensus 5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~ 84 (126)
T d1lmka1 5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS 84 (126)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence 456677899999999999997643 448899966543322221 11 222211 1 1467888878888889999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|.-
T Consensus 85 L~~eDTAvYYCAr 97 (126)
T d1lmka1 85 LTSEDSAVYYCAR 97 (126)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEEee
Confidence 9999999999963
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.52 E-value=4.9e-07 Score=61.60 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=62.3
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-c-cCCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-I-STGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~-~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++... ..+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~s 85 (128)
T d2nxyd1 6 ESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRN 85 (128)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeee
Confidence 445667899999999999997654 347899976554333321 1 12222111 1368888888888889999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDTA~YYCAr~ 99 (128)
T d2nxyd1 86 LRSDDTAVYFCAGV 99 (128)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred ccccCceEEEEeEE
Confidence 99999999999754
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.52 E-value=1.3e-07 Score=62.46 Aligned_cols=81 Identities=21% Similarity=0.342 Sum_probs=55.6
Q ss_pred eeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-ccCCceeEEe---ccceeeecCCCcceEEEEEcccCCCCC
Q psy8823 35 IKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-ISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDIQETDA 108 (386)
Q Consensus 35 ~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~ 108 (386)
.+++|++++|.|.+++. ....+.|+|.......+.+. +......... .+|+.+..+...+...|+|.+++.+|+
T Consensus 4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt 83 (107)
T d1sjva_ 4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT 83 (107)
T ss_dssp CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence 47899999999998864 34558999976544322221 2222221111 357788888888888999999999999
Q ss_pred eEEEEEe
Q psy8823 109 GYYRCQV 115 (386)
Q Consensus 109 G~Y~C~~ 115 (386)
+.|.|..
T Consensus 84 AvYyCA~ 90 (107)
T d1sjva_ 84 AVYYCYT 90 (107)
T ss_dssp SEEEEEE
T ss_pred eeeeEec
Confidence 9999954
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.51 E-value=2.3e-07 Score=63.45 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=61.0
Q ss_pred eeccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-CCceeEE---eccceeeecCCCcceEEEEEc
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-TGSSLII---RDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+++....+++|++++|.|.+++.. ...+.|+|.......+.+ .+. .+..... ..+|+.+..+...+...|.|.
T Consensus 5 ~esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~ 84 (130)
T d1rzga1 5 VQSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS 84 (130)
T ss_dssp EECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred eeECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence 345566789999999999998654 345899997654432222 112 2221111 135777877888888899999
Q ss_pred ccCCCCCeEEEEEe
Q psy8823 102 DIQETDAGYYRCQV 115 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~ 115 (386)
+++.+|++.|.|.-
T Consensus 85 sL~~eDtA~YYCAr 98 (130)
T d1rzga1 85 SLRSEDTAVFYCAS 98 (130)
T ss_dssp SCCGGGCEEEEEEE
T ss_pred ecCCCccEEEEEEE
Confidence 99999999999964
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.51 E-value=4.5e-07 Score=61.41 Aligned_cols=85 Identities=25% Similarity=0.470 Sum_probs=59.5
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-C-CceeE--EeccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-T-GSSLI--IRDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~-~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
..+..+++|++++|.|.+++.. ...+.|+|.......+.+ .+. . +.... ...+|+.+..+...+...|.|.++
T Consensus 7 sg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL 86 (121)
T d1ol0a_ 7 SGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSL 86 (121)
T ss_dssp EECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeec
Confidence 3456689999999999998754 345899997654332222 111 1 22211 123578888888888889999999
Q ss_pred CCCCCeEEEEEe
Q psy8823 104 QETDAGYYRCQV 115 (386)
Q Consensus 104 ~~~d~G~Y~C~~ 115 (386)
+.+|++.|.|..
T Consensus 87 ~~eDtAvYYCAr 98 (121)
T d1ol0a_ 87 RAEDTAVYYCAR 98 (121)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccccceEEEEEE
Confidence 999999999964
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=6.3e-07 Score=59.68 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=49.6
Q ss_pred ecceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 224 FAPVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 224 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
.+|.+.+.+.. ....|+.++|.|.+.|+.+. .++|.++|.. +............+..+...+.|. +..++.+
T Consensus 3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~--~~~~~~~~~~~~~dgtf~~~s~l~---v~~~~~~ 76 (99)
T d1lk2b_ 3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKK--IPKVEMSDMSFSKDWSFYILAHTE---FTPTETD 76 (99)
T ss_dssp BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEE--CTTCEEEEEEECTTCCEEEEEEEE---ECCCSSC
T ss_pred CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCee--cCCcEECceeECCCCCEEEEEEeE---ecCcCCC
Confidence 35555443221 23467889999999996443 7999999987 433332222222222222333344 4456677
Q ss_pred EEEEEEEcCCCc
Q psy8823 302 SYICRAANKLGT 313 (386)
Q Consensus 302 ~Y~C~a~n~~g~ 313 (386)
.|+|.+.+..-.
T Consensus 77 ~ytC~V~H~sl~ 88 (99)
T d1lk2b_ 77 TYACRVKHDSMA 88 (99)
T ss_dssp CEEEEEECTTSS
T ss_pred EEEEEEEeCCCC
Confidence 899999987543
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.50 E-value=3.1e-07 Score=62.35 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=60.2
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc-CC-ceeE--EeccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS-TG-SSLI--IRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~-~~-~~~~--~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. +. .+ .... ...+|+.+..+...+...|+|.+
T Consensus 6 eSG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~s 85 (125)
T d1op3h1 6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (125)
T ss_dssp EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeec
Confidence 34456689999999999998754 3458999976544322221 11 11 1111 11357888778888889999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDTAvYYCAr~ 99 (125)
T d1op3h1 86 MRVEDTAIYYCARK 99 (125)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cCCccceeEeEeec
Confidence 99999999999643
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=1.7e-07 Score=65.31 Aligned_cols=84 Identities=17% Similarity=0.324 Sum_probs=54.1
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeC--Cee----ee-e-ecC--ceeEEeee--------eecCcee
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKE--DTQ----QV-L-TNN--QHYSISHF--------ATADEFT 286 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~----~~-~-~~~--~~~~~~~~--------~~~~~~~ 286 (386)
+|.+...|....+.+|++++|.|.+.+.....+.|++- +.. .. + ... ........ .......
T Consensus 1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 80 (122)
T d1nezg_ 1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN 80 (122)
T ss_dssp CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence 46777778888889999999999998777778999872 211 00 1 010 00000000 0000112
Q ss_pred eeEEEEeecccCCCeEEEEEEE
Q psy8823 287 DTTIRVITIEKRQYGSYICRAA 308 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~ 308 (386)
...|+|++++.+|+|.|.|.+.
T Consensus 81 ~~~L~I~~~~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 81 KYVLTLNKFSKENEGYYFCSVI 102 (122)
T ss_dssp EEEEEESSCCGGGCEEEEEEEE
T ss_pred EeEEEEcccccCCCEEEEeeEe
Confidence 3579999999999999999875
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3.7e-07 Score=61.28 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=56.9
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+|.+.+.++......+..++|.|.+.|+.+. .|+|.++|.. +...... ......++.+...+.|.|..-..+...
T Consensus 5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~--~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~ 82 (102)
T d1q0xl2 5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTP--VTAGMETTQPSKQSNNKYMASSYLTLTARAWERHS 82 (102)
T ss_dssp CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCC
T ss_pred CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEE--CCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCC
Confidence 3444443333333345678999999886433 7999999987 3322211 111222333456778888887777888
Q ss_pred EEEEEEEcCCCceeeE
Q psy8823 302 SYICRAANKLGTSEKT 317 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~ 317 (386)
.|+|.|.+.....+.+
T Consensus 83 ~ytC~V~H~~~~~~kt 98 (102)
T d1q0xl2 83 SYSCQVTHEGHSSNKT 98 (102)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEEEECCccEeeE
Confidence 8999999976544433
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=6.1e-07 Score=60.41 Aligned_cols=77 Identities=16% Similarity=0.259 Sum_probs=52.1
Q ss_pred cCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 238 ALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
..+..++|.|.+.|+ |.. .++|.++|.. +...............+...+.|.|..-.+.....|+|.+.+.....+
T Consensus 19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~--~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~ 96 (104)
T d1o0va1 19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQV--MDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFE 96 (104)
T ss_dssp CCCSEEEEEEEEEEECCCCEEEEEEETTEE--CCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEE
T ss_pred CCCCeEEEEEEEEEEECCCcEEEEEECCEE--ccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEE
Confidence 445679999999985 444 7999999988 443333222222333344567788877776777779999999865444
Q ss_pred e
Q psy8823 316 K 316 (386)
Q Consensus 316 ~ 316 (386)
.
T Consensus 97 ~ 97 (104)
T d1o0va1 97 D 97 (104)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=98.50 E-value=2.9e-07 Score=62.46 Aligned_cols=87 Identities=25% Similarity=0.393 Sum_probs=60.9
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-c-cCCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-I-STGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~-~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~s 85 (122)
T d1bz7b1 6 ESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTS 85 (122)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeee
Confidence 34456688999999999999764 3458999976554333321 1 12211111 2467888777778888999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDTAvYYCAr~ 99 (122)
T d1bz7b1 86 LRSEDTAIYYCTRG 99 (122)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred ecccCceEEEeecC
Confidence 99999999999643
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.50 E-value=3.6e-07 Score=63.71 Aligned_cols=93 Identities=13% Similarity=0.240 Sum_probs=52.7
Q ss_pred CCCcccccCCCcEEEEEEEEec----CCCeeEEEeCCee----eee--ecCceeEEe---------eeeecCceeeeEEE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAY----PPPAIVWIKEDTQ----QVL--TNNQHYSIS---------HFATADEFTDTTIR 291 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~----p~~~~~W~~~~~~----~~~--~~~~~~~~~---------~~~~~~~~~~~~L~ 291 (386)
.+....+..|++++|.|..... ....+.|++.... ..+ ......... .+..........|.
T Consensus 5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 84 (119)
T d1neua_ 5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV 84 (119)
T ss_dssp CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence 3455667889999999997532 2237899863211 001 000000000 00001112345799
Q ss_pred EeecccCCCeEEEEEEEcCCC--ceeeEEEEEEE
Q psy8823 292 VITIEKRQYGSYICRAANKLG--TSEKTVELFES 323 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~v~ 323 (386)
|.+++.+|+|.|.|.+.++.+ .....+.|.|.
T Consensus 85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred ECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 999999999999999998654 33445666654
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.50 E-value=3.4e-07 Score=62.22 Aligned_cols=85 Identities=19% Similarity=0.366 Sum_probs=60.2
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-cc--CCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-IS--TGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++...++++|+++.|.|.+++... ..+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~ 85 (127)
T d1n0xh1 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (127)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence 556777999999999999997543 458999966543322221 11 1121111 1357788877778888999999
Q ss_pred cCCCCCeEEEEE
Q psy8823 103 IQETDAGYYRCQ 114 (386)
Q Consensus 103 ~~~~d~G~Y~C~ 114 (386)
++.+|++.|.|.
T Consensus 86 L~~eDtAvYYCA 97 (127)
T d1n0xh1 86 LRSADTAVYYCA 97 (127)
T ss_dssp CCGGGCEEEEEE
T ss_pred cCCCCceEEEEE
Confidence 999999999995
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.49 E-value=4.1e-07 Score=61.46 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=61.1
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++....+++|+++.|.|.+++... ..+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~s 85 (124)
T d1yedb1 6 QSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSS 85 (124)
T ss_dssp ECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEES
T ss_pred eeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccc
Confidence 455667899999999999997643 458999976544333221 21 1222111 1357888888888889999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|..
T Consensus 86 L~~eDTAvYYCAR 98 (124)
T d1yedb1 86 LKSEDSAVYFCTR 98 (124)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEecc
Confidence 9999999999963
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=98.49 E-value=3e-07 Score=62.53 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=56.6
Q ss_pred ccceeeecCCcEEEEEEEeeCCC----CcEEEEecCCccccccc-cc-cCCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPL-PI-STGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.....+++|++++|.|.+++... ..+.|+|.......+.+ .+ ..+..... ..+|+.+..+...+...|+|.+
T Consensus 7 sg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~s 86 (123)
T d1r0ah1 7 SGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMT 86 (123)
T ss_dssp ECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred ECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceee
Confidence 34556889999999999886432 24689986544322221 11 22222111 1357777777777778999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|..
T Consensus 87 l~~eDsAvYyCAr 99 (123)
T d1r0ah1 87 VETADTAIYYCAQ 99 (123)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cccccceEEeecc
Confidence 9999999999964
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.4e-07 Score=62.43 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=56.4
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...|. .+|..|++|+|.|... .....+.++|++..... .. .. .........+.|.+
T Consensus 3 PkP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~---~~-~~-------------~~~~~~~a~F~i~~ 63 (96)
T d1ugna1 3 PKPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPW---IT-RI-------------PQELVKKGQFPIPS 63 (96)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHH---HH-TS-------------CHHHHTTTEEEESS
T ss_pred CCCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCccc---EE-Ec-------------cCCCCCEEEEEEEe
Confidence 3677877766 4578999999999964 45566888887753210 00 00 00001123789999
Q ss_pred cCCCCCeEEEEEeEEccc--ceeeeEEEEEE
Q psy8823 103 IQETDAGYYRCQVIIGIN--NKISAEVDLQV 131 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v 131 (386)
++.+|+|.|+|....... ...+..+.|.|
T Consensus 64 v~~~~~G~Y~C~y~~~~~~~S~~Sd~leL~V 94 (96)
T d1ugna1 64 ITWEHTGRYRCYYGSDTAGRSESSDPLELVV 94 (96)
T ss_dssp CCGGGCEEEEEEEEETTTEECCCCCCEEEEE
T ss_pred cCHHHCCeEEEEEeCCCCCccccCCCEEEEE
Confidence 999999999998654321 23344555554
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.47 E-value=2.4e-07 Score=63.61 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=55.3
Q ss_pred eeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCC-ceeEEe---ccceeeecCCCcceEEEEEcc
Q psy8823 27 ISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTG-SSLIIR---DSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 27 i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++..|...++.+|++|+|.|.........+.||+.........+..... ...... ..++.... ..+..|.|..
T Consensus 4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~---~~~~~l~l~~ 80 (112)
T d1fo0b_ 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR---VTDTELRLQV 80 (112)
T ss_dssp EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEE---EETTEEEEEE
T ss_pred EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccc---ccccEEEEec
Confidence 5556777778999999999998755555689999865543333322221 111111 12333221 1224788888
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 81 ~~~~dsa~Y~Ca~~ 94 (112)
T d1fo0b_ 81 ANMSQGRTLYCTCS 94 (112)
T ss_dssp ESCCSCEEEEEEEE
T ss_pred CCccCCccEEEEEe
Confidence 99999999999864
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.4e-06 Score=57.43 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=49.4
Q ss_pred CCCcEEEEEEEEe-cCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCceeeE
Q psy8823 239 LQYDMDLECHVEA-YPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSEKT 317 (386)
Q Consensus 239 ~g~~~~l~C~~~g-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 317 (386)
.++.++|.|.+.| +|++.+.|++++.. +............++.+...+.|.+. ..+...|+|.+.+..-.....
T Consensus 15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~--~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~ 89 (95)
T d1dr9a2 15 TSNIRRIICSTSGGFPEPHLSWLENGEE--LNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQT 89 (95)
T ss_dssp STTEEEEEEEEEEESSCEEEEEEESSCE--ECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEE
T ss_pred CCCEEEEEEEECcccCCCEEEEecCCcE--ecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEE
Confidence 4677999999987 68889999999887 44333322222222333445566664 345678999999987655544
Q ss_pred E
Q psy8823 318 V 318 (386)
Q Consensus 318 ~ 318 (386)
+
T Consensus 90 ~ 90 (95)
T d1dr9a2 90 F 90 (95)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.47 E-value=4.8e-07 Score=60.78 Aligned_cols=86 Identities=20% Similarity=0.334 Sum_probs=60.8
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-cc-CCceeEE---eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-IS-TGSSLII---RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~~-~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+....++++|++++|.|.+++... ..+.|+|......-+.+. +. .+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~ 85 (120)
T d1ad9b1 6 QSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSS 85 (120)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccc
Confidence 455667899999999999987543 458999966543322221 11 1112111 2467788888888889999999
Q ss_pred cCCCCCeEEEEEe
Q psy8823 103 IQETDAGYYRCQV 115 (386)
Q Consensus 103 ~~~~d~G~Y~C~~ 115 (386)
++.+|++.|.|..
T Consensus 86 L~~eDTAvYYCAr 98 (120)
T d1ad9b1 86 LRSEDTAFYFCAR 98 (120)
T ss_dssp CCGGGCEEEEEEE
T ss_pred cCCCcceEEEEEE
Confidence 9999999999964
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.47 E-value=4.3e-07 Score=62.78 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=58.1
Q ss_pred cceeeecCCcEEEEEEEeeCCC----CcEEEEecCCcccccccc-cc-CCceeEE--eccceeeecCCCcceEEEEEccc
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPLP-IS-TGSSLII--RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
....+++|++++|.|.+++... .-+.|+|.......+.+. +. .+..... -.+|+.+..+...+...|.|.++
T Consensus 8 g~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l 87 (132)
T d1tjgh1 8 GPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRV 87 (132)
T ss_dssp CCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccC
Confidence 4556889999999999886432 247899976544332222 12 2221111 13577777777777889999999
Q ss_pred CCCCCeEEEEEeE
Q psy8823 104 QETDAGYYRCQVI 116 (386)
Q Consensus 104 ~~~d~G~Y~C~~~ 116 (386)
+.+|++.|.|...
T Consensus 88 ~~eDtAvYYCAr~ 100 (132)
T d1tjgh1 88 SPVDTATYFCAHR 100 (132)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CcccceEEEEEEe
Confidence 9999999999643
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=98.46 E-value=4e-07 Score=62.51 Aligned_cols=84 Identities=23% Similarity=0.276 Sum_probs=56.8
Q ss_pred cceeeecCCcEEEEEEEeeCCC----CcEEEEecCCccccccc-cccCCceeEEe---ccceeeecCCCcceEEEEEccc
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQD----YPVIWMKVDRNKVTEPL-PISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~----~~v~W~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
....+++|++++|.|.++|... ..+.|+|.......+.+ .+..+...... .+|+.+..+...+...|.|.++
T Consensus 8 G~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l 87 (126)
T d1etzb1 8 GPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSV 87 (126)
T ss_dssp CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecc
Confidence 3456889999999999886432 24679986543322211 12222222111 3578777777778889999999
Q ss_pred CCCCCeEEEEEe
Q psy8823 104 QETDAGYYRCQV 115 (386)
Q Consensus 104 ~~~d~G~Y~C~~ 115 (386)
+.+|++.|.|..
T Consensus 88 ~~eDtAvYyCAr 99 (126)
T d1etzb1 88 DTSDTATYHCAR 99 (126)
T ss_dssp CGGGCEEEEEEE
T ss_pred cccccceEEEEE
Confidence 999999999964
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=98.46 E-value=5e-07 Score=61.99 Aligned_cols=87 Identities=22% Similarity=0.354 Sum_probs=59.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-c------cCCceeEE---eccceeeecCCCcceEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-I------STGSSLII---RDSRFAIRYDTASSTYT 97 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~------~~~~~~~~---~~~~~~~~~~~~~~~~~ 97 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. + ..+..... ..+|+.+..+...+...
T Consensus 6 esG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~ 85 (127)
T d1i3ua_ 6 ESGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVN 85 (127)
T ss_dssp EESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEE
T ss_pred eECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEE
Confidence 34456688999999999998754 3458899976443222221 0 01111111 12477777777778889
Q ss_pred EEEcccCCCCCeEEEEEeE
Q psy8823 98 LLVKDIQETDAGYYRCQVI 116 (386)
Q Consensus 98 L~i~~~~~~d~G~Y~C~~~ 116 (386)
|+|.+++.+|++.|.|...
T Consensus 86 L~i~~l~~eDtAvYYCAr~ 104 (127)
T d1i3ua_ 86 LQMNSLKPEDTAVYYCAAK 104 (127)
T ss_dssp EEECSCCGGGCEEEEEEEE
T ss_pred EeeecccccceeEEEEEEE
Confidence 9999999999999999754
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=9.3e-07 Score=58.59 Aligned_cols=79 Identities=23% Similarity=0.279 Sum_probs=49.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeCCCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcc
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYAQDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
.+|.+...|.. +|..|++|+|.|... .....+.++|++......... ............+.|.+
T Consensus 3 pkPsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~--------------~~~~~~~~~~a~F~l~~ 66 (98)
T d1ugna2 3 IKPTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLN--------------SQPHARGSSRAIFSVGP 66 (98)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEE--------------C------CCEEEEEECC
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeee--------------eEEcCCCceEEEEEeee
Confidence 56888888754 588999999999865 345567888876542110000 00001112334799999
Q ss_pred cCCCCCeEEEEEeEE
Q psy8823 103 IQETDAGYYRCQVII 117 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~~ 117 (386)
++.+|+|.|+|....
T Consensus 67 v~~~~~G~Y~C~y~~ 81 (98)
T d1ugna2 67 VSPSRRWWYRCYAYD 81 (98)
T ss_dssp CCTTSCEEEEEEEEC
T ss_pred cccCCCeEEEEeeEc
Confidence 999999999998754
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.45 E-value=5.8e-07 Score=60.48 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=61.0
Q ss_pred eeccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCcccccccc-c---cCC-ceeE--EeccceeeecCCCcceEEEE
Q psy8823 29 YISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLP-I---STG-SSLI--IRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 29 ~~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~-~---~~~-~~~~--~~~~~~~~~~~~~~~~~~L~ 99 (386)
++....++++|++++|.|.+++... ..+.|+|.......+.+. + ..+ .... ...+|+.+..+...+...|.
T Consensus 5 ~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~ 84 (121)
T d1nfdf1 5 VESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQ 84 (121)
T ss_dssp EEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEE
T ss_pred eeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeece
Confidence 3455677999999999999997653 347899966543222221 1 111 1111 12467888888888889999
Q ss_pred EcccCCCCCeEEEEEe
Q psy8823 100 VKDIQETDAGYYRCQV 115 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~ 115 (386)
|.+++.+|++.|.|..
T Consensus 85 ~~~L~~eDTAvYYCAr 100 (121)
T d1nfdf1 85 MNRLRVDDTAIYYCTR 100 (121)
T ss_dssp EESCCGGGCEECEEEE
T ss_pred ecccCCCcceEEEEec
Confidence 9999999999999964
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=98.45 E-value=4.4e-07 Score=61.06 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred eccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCcccccccc-c-cCCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLP-I-STGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
++.+.++++|++++|.|.++|... ..+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|.|.+
T Consensus 6 esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~s 85 (119)
T d1ncwh1 6 QSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNS 85 (119)
T ss_dssp EESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccc
Confidence 345667899999999999997643 347899865443222111 1 22222111 1357888888888889999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 86 L~~eDTAvYYCAr~ 99 (119)
T d1ncwh1 86 VTTEDTATYYCAGL 99 (119)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred cccCCceEEEEeEe
Confidence 99999999999643
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=4.5e-07 Score=59.83 Aligned_cols=87 Identities=20% Similarity=0.275 Sum_probs=55.9
Q ss_pred CCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCCC--
Q psy8823 134 PPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGVG-- 211 (386)
Q Consensus 134 ~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-- 211 (386)
+|.+...+.. .+..|++|+|.|.........+.|+|+|...............+.|.+++.+|+|.|+|.......
T Consensus 5 kP~Lsa~P~~--~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~ 82 (96)
T d1ucta2 5 KPFLSADRGL--VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPY 82 (96)
T ss_dssp CCEEEESSCS--EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTT
T ss_pred CCEEEEeCCC--ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcCCCCC
Confidence 3444443322 588999999999863333457899999864332221112245799999999999999999865432
Q ss_pred --CceeeeEEEEE
Q psy8823 212 --KGTRRNIAVEV 222 (386)
Q Consensus 212 --~~~~~~~~l~v 222 (386)
...+..+.|.|
T Consensus 83 ~~S~~Sd~leL~V 95 (96)
T d1ucta2 83 LWSFPSNALELVV 95 (96)
T ss_dssp EECCCCCCEEEEE
T ss_pred CccCCCCCEEEEE
Confidence 22345555544
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.44 E-value=6.4e-07 Score=60.29 Aligned_cols=87 Identities=23% Similarity=0.364 Sum_probs=59.6
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-c---cCCceeEE---eccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-I---STGSSLII---RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~---~~~~~~~~---~~~~~~~~~~~~~~~~~L~i 100 (386)
++....+++|++++|.|.+++.. ...+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|.|
T Consensus 6 esG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~ 85 (120)
T d1dlfh_ 6 ESGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQM 85 (120)
T ss_dssp EECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred eECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccce
Confidence 34556688999999999998653 4458999965543222111 1 11111111 13578887777888889999
Q ss_pred cccCCCCCeEEEEEeE
Q psy8823 101 KDIQETDAGYYRCQVI 116 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~ 116 (386)
.+++.+|++.|.|...
T Consensus 86 ~~L~~eDtAvYYCA~~ 101 (120)
T d1dlfh_ 86 NTLRAEDTGIYYCTGI 101 (120)
T ss_dssp CSCCGGGCEEEEEEEE
T ss_pred eeccCCCceEEEeeEe
Confidence 9999999999999643
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.43 E-value=5.9e-07 Score=60.94 Aligned_cols=68 Identities=24% Similarity=0.411 Sum_probs=47.8
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee-----------CCCCceE-----EeeeEEEECCCCCCCCeEE
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI-----------LPTGGSI-----YRGSILKIPQITKEDRGTY 202 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~-----------~~~~~~~-----~~~~~l~i~~~~~~d~g~y 202 (386)
.+..+.+.+|++|+|.|.........+.||+... .. ....... .....|.|.+++.+|+|.|
T Consensus 7 sP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Y 86 (107)
T d1kcvl1 7 SPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADY 86 (107)
T ss_dssp SCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred cCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceE
Confidence 4567789999999999998665556799998421 10 0000011 1245799999999999999
Q ss_pred EEEEec
Q psy8823 203 YCVAEN 208 (386)
Q Consensus 203 ~C~~~~ 208 (386)
.|.+..
T Consensus 87 yCa~~~ 92 (107)
T d1kcvl1 87 YCGQSY 92 (107)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 998754
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=98.42 E-value=8.7e-07 Score=59.90 Aligned_cols=86 Identities=26% Similarity=0.418 Sum_probs=60.0
Q ss_pred eccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-c---cCCceeEE---eccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-I---STGSSLII---RDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~---~~~~~~~~---~~~~~~~~~~~~~~~~~L~i 100 (386)
+.....+++|++++|.|.+++.. ...+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|+|
T Consensus 6 esg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~ 85 (122)
T d1q9rb1 6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM 85 (122)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred eECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccce
Confidence 34556689999999999998754 3458999876544322221 1 11111111 13578888788888889999
Q ss_pred cccCCCCCeEEEEEe
Q psy8823 101 KDIQETDAGYYRCQV 115 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~ 115 (386)
.+++.+|++.|.|..
T Consensus 86 ~sL~~eDTAvYYCar 100 (122)
T d1q9rb1 86 NTLRAEDSATYYCAR 100 (122)
T ss_dssp CSCCGGGCEEEEEEE
T ss_pred eeeccCcceEEEEEe
Confidence 999999999999974
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=98.41 E-value=2.4e-06 Score=56.61 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=48.9
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeE-EeeeeecCceeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYS-ISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+|.+.+.+.. .+..|+.++|.|.+.|+.++ .++|++||.. +..+.... .....+..+...+.|.+ ..++.+
T Consensus 3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~--v~~~~~~t~~~~~~dgtf~~~s~l~v---~~~~~~ 76 (100)
T d1muja1 3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKS--VADGVYETSFFVNRDYSFHKLSYLTF---IPSDDD 76 (100)
T ss_dssp CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSB--CCSSEEECCCEECTTSCEEEEEEEEE---CCCTTC
T ss_pred CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCee--ccCCceeeeeEECCCCCEEEEEEeEE---cCCCCC
Confidence 4555443322 34567889999999997443 8999999977 43322111 11111222223444444 345667
Q ss_pred EEEEEEEcCCCc
Q psy8823 302 SYICRAANKLGT 313 (386)
Q Consensus 302 ~Y~C~a~n~~g~ 313 (386)
.|+|.+.+..-.
T Consensus 77 ~ytC~V~H~sl~ 88 (100)
T d1muja1 77 IYDCKVEHWGLE 88 (100)
T ss_dssp CEEEEEECTTSS
T ss_pred EEEEEEEECCCC
Confidence 899999987543
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=98.41 E-value=3.5e-07 Score=61.20 Aligned_cols=85 Identities=21% Similarity=0.335 Sum_probs=60.4
Q ss_pred eccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCcccccccc-cc-C-CceeEEe--ccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLP-IS-T-GSSLIIR--DSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~-~-~~~~~~~--~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|++++|.|.+++. ....+.|+|.......+.+. +. . +...... .+|+.+..+...+...|.|.+
T Consensus 6 esG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~s 85 (117)
T d1b2wh1 6 QSGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNS 85 (117)
T ss_dssp ECCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecc
Confidence 3455668999999999999864 34568899966544333221 11 2 2211111 368888888888899999999
Q ss_pred cCCCCCeEEEEE
Q psy8823 103 IQETDAGYYRCQ 114 (386)
Q Consensus 103 ~~~~d~G~Y~C~ 114 (386)
++.+|++.|.|.
T Consensus 86 L~~eDTAvYYCA 97 (117)
T d1b2wh1 86 LRPEDTAVYYCA 97 (117)
T ss_dssp CCGGGCEEEECC
T ss_pred ccCCcceEEEEc
Confidence 999999999995
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=4.1e-07 Score=61.66 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=54.6
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEe--eeeecCceeeeEEEEeecccCCC
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSIS--HFATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
+|.+.+.++......+..++|.|.+.|+ |.. .|+|.+||.. +......... ...++.+...+.|.|..-.++..
T Consensus 5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~--~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g 82 (107)
T d1mjul2 5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH 82 (107)
T ss_dssp CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEE--ccCCeEeccccEecCCCCEEEEEEEEECHHHhCCC
Confidence 3444433333333346689999999885 433 7999999987 4332211111 11122334566788877777777
Q ss_pred eEEEEEEEcCCCcee
Q psy8823 301 GSYICRAANKLGTSE 315 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~ 315 (386)
..|+|.+.+......
T Consensus 83 ~~ytC~V~H~~~~~p 97 (107)
T d1mjul2 83 NSYTCEATHKTSTSP 97 (107)
T ss_dssp CEEEEEEECTTCSSC
T ss_pred CEEEEEEEECCCCCC
Confidence 789999998765443
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=98.38 E-value=5.2e-07 Score=60.59 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=52.5
Q ss_pred ceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 226 PVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 226 p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
|.+.+.++......++.++|.|.+.|+ |.. .++|.++|.. .............++.+...+.|.|..-..+.+..|
T Consensus 5 P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~--~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~y 82 (102)
T d1igtb4 5 PQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKT--ELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSY 82 (102)
T ss_dssp CEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEE--CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCE
T ss_pred CEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEE--ccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEE
Confidence 444333333333357789999999985 443 8999999876 222211111112223334567788877776667779
Q ss_pred EEEEEcCCC
Q psy8823 304 ICRAANKLG 312 (386)
Q Consensus 304 ~C~a~n~~g 312 (386)
+|.+.+..-
T Consensus 83 tC~V~H~~l 91 (102)
T d1igtb4 83 SCSVVHEGL 91 (102)
T ss_dssp EEEEECTTS
T ss_pred EEEEEeCCC
Confidence 999998753
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.38 E-value=1.3e-06 Score=59.84 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=60.8
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCccccccc-cc--cCCceeEE--eccceeeecCCCcceEEEEEcc
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPL-PI--STGSSLII--RDSRFAIRYDTASSTYTLLVKD 102 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~-~~--~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~ 102 (386)
+.....+++|+++.|.|.+++... ..+.|+|.......+.+ .+ ..+..... ..+|+.+..+...+...|.|.+
T Consensus 5 esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~ 84 (133)
T d1rzfh1 5 QSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRG 84 (133)
T ss_dssp ECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeecc
Confidence 445667899999999999987543 44889996554332222 11 11221111 1367888888888889999999
Q ss_pred cCCCCCeEEEEEeE
Q psy8823 103 IQETDAGYYRCQVI 116 (386)
Q Consensus 103 ~~~~d~G~Y~C~~~ 116 (386)
++.+|++.|.|...
T Consensus 85 L~~eDtA~YYCAr~ 98 (133)
T d1rzfh1 85 LRSDDTAVYYCASN 98 (133)
T ss_dssp CCGGGCEEEEEEEE
T ss_pred CCCCCCEEEEeeec
Confidence 99999999999543
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.38 E-value=2.2e-07 Score=62.40 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=59.6
Q ss_pred ccceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-cccCCceeEEe---ccceeeecCCCcceEEEEEcccC
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PISTGSSLIIR---DSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
....++++|++++|.|.+++.. ...+.|+|.......+.+ .+......... .+|+.+..+...+...|.|.+++
T Consensus 7 Sg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~ 86 (116)
T d1fn4b1 7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (116)
T ss_dssp ECCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCC
T ss_pred ECCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccC
Confidence 3445688999999999998754 345889996654433322 11222211111 36778877778888899999999
Q ss_pred CCCCeEEEEEeE
Q psy8823 105 ETDAGYYRCQVI 116 (386)
Q Consensus 105 ~~d~G~Y~C~~~ 116 (386)
.+|++.|.|...
T Consensus 87 ~eDTAvYyCAr~ 98 (116)
T d1fn4b1 87 TDDTGTYYCTRD 98 (116)
T ss_dssp CCCCEEEEEEEE
T ss_pred CCCCEEEEEEee
Confidence 999999999543
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.37 E-value=5.2e-07 Score=61.05 Aligned_cols=70 Identities=24% Similarity=0.374 Sum_probs=48.7
Q ss_pred CCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeC-------------CCCceE-----EeeeEEEECCCCCCCCeE
Q psy8823 140 NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAIL-------------PTGGSI-----YRGSILKIPQITKEDRGT 201 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-------------~~~~~~-----~~~~~l~i~~~~~~d~g~ 201 (386)
..+..+.+.+|++++|.|...+.....+.||+....-. ...... .....|.|.++..+|+|.
T Consensus 6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~ 85 (107)
T d1ospl1 6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT 85 (107)
T ss_dssp CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence 34667789999999999988665555799998421100 000001 123579999999999999
Q ss_pred EEEEEecC
Q psy8823 202 YYCVAENG 209 (386)
Q Consensus 202 y~C~~~~~ 209 (386)
|.|.+...
T Consensus 86 YyCa~~~~ 93 (107)
T d1ospl1 86 YFCQQYWS 93 (107)
T ss_dssp EEEEECSS
T ss_pred EEEeeccC
Confidence 99987643
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=3.6e-07 Score=61.40 Aligned_cols=89 Identities=16% Similarity=0.288 Sum_probs=54.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+|.+.+.++......++.++|.|.+.|+.+. .+.|.++|.. +...... ......++.+...+.|.|.....+.+.
T Consensus 5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~--~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~ 82 (102)
T d1rzfl2 5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSP--VKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHR 82 (102)
T ss_dssp CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEE--CCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSS
T ss_pred CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEE--CCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCC
Confidence 4555443333333346679999999985433 7999999987 3332221 111122233445677888777766667
Q ss_pred EEEEEEEcCCCcee
Q psy8823 302 SYICRAANKLGTSE 315 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~ 315 (386)
.|+|.+.+......
T Consensus 83 ~ytC~V~H~~~~~~ 96 (102)
T d1rzfl2 83 SYSCQVTHEGSTVE 96 (102)
T ss_dssp CEEEEEEETTEEEE
T ss_pred EEEEEEEECCccEE
Confidence 79999999854433
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.36 E-value=7e-07 Score=60.21 Aligned_cols=67 Identities=25% Similarity=0.371 Sum_probs=47.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeC-----------C-CCceE----EeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAIL-----------P-TGGSI----YRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-----------~-~~~~~----~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.........+.||+.. .... . ..... .....|.|.+++.+|+|.|.
T Consensus 8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 87 (107)
T d1c5cl1 8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYY 87 (107)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEE
Confidence 45677889999999999876656679999832 2110 0 00111 12458999999999999999
Q ss_pred EEEec
Q psy8823 204 CVAEN 208 (386)
Q Consensus 204 C~~~~ 208 (386)
|.+.+
T Consensus 88 Ca~~~ 92 (107)
T d1c5cl1 88 CLQYA 92 (107)
T ss_dssp EEECS
T ss_pred EecCc
Confidence 98764
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.36 E-value=6.6e-07 Score=59.88 Aligned_cols=72 Identities=11% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 239 LQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
..+.++|.|.+.|+ |.. .+.|.++|.. .............++.+...+.|.|..-..+.+..|+|.+.+..-
T Consensus 17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~--~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l 90 (101)
T d1cqka_ 17 AKDLVSLTCMITDFFPEDITVEWQWNGQP--AENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 90 (101)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEE--CCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CCCcEEEEEEEEEeECCCcEEEEEECCEE--ccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence 45679999999995 544 8999999987 322222111222233344567788877776677789999999753
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.35 E-value=1.2e-06 Score=60.04 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=60.2
Q ss_pred eccceeeecCCcEEEEEEEeeCCC--CcEEEEecCCccccccccc----c-CCceeE--EeccceeeecCCCcceEEEEE
Q psy8823 30 ISQEQIKDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLPI----S-TGSSLI--IRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 30 ~~~~~~v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~~----~-~~~~~~--~~~~~~~~~~~~~~~~~~L~i 100 (386)
+.....+++|++++|.|.+++... ..+.|+|.......+.+.. . .+.... ...+|+.+..+...+...|.|
T Consensus 6 esG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~ 85 (131)
T d3c2ah1 6 ESGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQM 85 (131)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred eECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecce
Confidence 344566899999999999986543 4589999765443222211 1 111111 124577888788888889999
Q ss_pred cccCCCCCeEEEEEeE
Q psy8823 101 KDIQETDAGYYRCQVI 116 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~ 116 (386)
.+++.+|++.|.|...
T Consensus 86 ~~L~~eDTAvYYCAR~ 101 (131)
T d3c2ah1 86 NSLKTEDTAVYSCTTD 101 (131)
T ss_dssp CSCCGGGCEEEEEEEE
T ss_pred eccccCCceEEEEecc
Confidence 9999999999999643
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.35 E-value=7.6e-07 Score=60.18 Aligned_cols=66 Identities=21% Similarity=0.412 Sum_probs=46.0
Q ss_pred ceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eC--------CCC-ceE----EeeeEEEECCCCCCCCeEEEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----IL--------PTG-GSI----YRGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~--------~~~-~~~----~~~~~l~i~~~~~~d~g~y~C 204 (386)
..+.+.+|++++|.|...+.....+.||+.... +. ... ... .....|.|.+++.+|+|.|.|
T Consensus 8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC 87 (106)
T d1lk3l1 8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC 87 (106)
T ss_dssp SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence 467899999999999987655567999974211 10 000 101 113589999999999999999
Q ss_pred EEec
Q psy8823 205 VAEN 208 (386)
Q Consensus 205 ~~~~ 208 (386)
....
T Consensus 88 a~~~ 91 (106)
T d1lk3l1 88 QQSW 91 (106)
T ss_dssp EECS
T ss_pred cccc
Confidence 7653
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.35 E-value=6.6e-07 Score=60.61 Aligned_cols=68 Identities=25% Similarity=0.400 Sum_probs=47.3
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee--e-----------CCCCce-----EEeeeEEEECCCCCCCCeEE
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA--I-----------LPTGGS-----IYRGSILKIPQITKEDRGTY 202 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~-----------~~~~~~-----~~~~~~l~i~~~~~~d~g~y 202 (386)
.+..+.+.+|++++|.|.........+.||+.... . ...... ......|.|.+++.+|+|.|
T Consensus 7 ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Y 86 (107)
T d1j1pl_ 7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY 86 (107)
T ss_dssp ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred cCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEE
Confidence 35667899999999999886555567999984311 0 000001 11245899999999999999
Q ss_pred EEEEec
Q psy8823 203 YCVAEN 208 (386)
Q Consensus 203 ~C~~~~ 208 (386)
.|.+.+
T Consensus 87 yCa~~~ 92 (107)
T d1j1pl_ 87 FCQQAN 92 (107)
T ss_dssp EEEECS
T ss_pred EEEcCC
Confidence 997754
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=7.8e-07 Score=59.73 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=48.2
Q ss_pred CCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 239 LQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.++.++|.|.+.|+ |.. .++|.++|.. .............++.+...+.|.+..-.++.+-.|+|.+.+...
T Consensus 18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~--~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l 91 (102)
T d1l6xa2 18 TKNQVSLTCLVKGFYPSDIAVEWESNGQP--ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 91 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEE--ECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred cCCceEEEEEEEEeECCCCEEEEEECCEE--CCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence 46789999999985 443 8999999986 332222212222233344567788877766666679999999754
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=7.4e-07 Score=60.41 Aligned_cols=89 Identities=15% Similarity=0.255 Sum_probs=55.1
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEee--eeecCceeeeEEEEeecccCCC
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISH--FATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
+|.+.+.++......++.++|.|.+.|+ |.. .|+|.+||.. ........... ..++.+...+.|.|..-.++.+
T Consensus 5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~--~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~ 82 (107)
T d1c5cl2 5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL--QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKH 82 (107)
T ss_dssp CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE--CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTC
T ss_pred CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEE--CCCCEEEecccccCCCCcEEEEEEEEECHHHhCCC
Confidence 4444443333333345789999999985 443 8999999987 33322211111 1122334567888887777777
Q ss_pred eEEEEEEEcCCCcee
Q psy8823 301 GSYICRAANKLGTSE 315 (386)
Q Consensus 301 G~Y~C~a~n~~g~~~ 315 (386)
..|+|.+.+......
T Consensus 83 ~~ytC~V~H~~~~~p 97 (107)
T d1c5cl2 83 KVYACEVTHQGLSSP 97 (107)
T ss_dssp CEEEEEEECTTCSSC
T ss_pred CEEEEEEEECCCCCc
Confidence 789999999765443
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=98.35 E-value=1.2e-06 Score=59.77 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=55.8
Q ss_pred cceeeecCCcEEEEEEEeeCC--CCcEEEEecCCccccccc-ccc-C-CceeEEe--ccceeeecCCCcceEEEEEcccC
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPL-PIS-T-GSSLIIR--DSRFAIRYDTASSTYTLLVKDIQ 104 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~-~-~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~ 104 (386)
....+++|+++.|.|.+++.. ...+.|+|.......+.+ .+. . +...... .+|+.+..+...+...|.|.+++
T Consensus 7 G~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~ 86 (126)
T d1rjca1 7 GGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLK 86 (126)
T ss_dssp CCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccC
Confidence 455688999999999998753 345899997654332221 111 2 2221111 35777777777788889999999
Q ss_pred CCCCeEEEEEe
Q psy8823 105 ETDAGYYRCQV 115 (386)
Q Consensus 105 ~~d~G~Y~C~~ 115 (386)
.+|++.|.|..
T Consensus 87 ~eDTAvYYCAr 97 (126)
T d1rjca1 87 PEDTAMYYCAA 97 (126)
T ss_dssp GGGCEEEEEEE
T ss_pred cccCceeEEEe
Confidence 99999999964
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.34 E-value=7.9e-07 Score=58.55 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=46.4
Q ss_pred cCCcEEEEEEEeeCC--CCcEEEEecCCcccccccc-cc--CCceeEE--eccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 38 IGGTVELKCSVQYAQ--DYPVIWMKVDRNKVTEPLP-IS--TGSSLII--RDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 38 ~G~~v~L~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+|++++|.|.+++.. ...+.|+|.......+.+. +. .+..... ..+|+.+..+...+...|+|.+++.+|++.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 589999999998754 3458999976544322221 11 1111111 135777777777888899999999999999
Q ss_pred EEEEeE
Q psy8823 111 YRCQVI 116 (386)
Q Consensus 111 Y~C~~~ 116 (386)
|.|...
T Consensus 81 YYCAr~ 86 (103)
T d1oari_ 81 YYCARM 86 (103)
T ss_dssp EEEEEE
T ss_pred EEeEEE
Confidence 999643
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=8.3e-06 Score=49.83 Aligned_cols=90 Identities=22% Similarity=0.375 Sum_probs=58.5
Q ss_pred eeeecCCcEEEEEEEeeC-CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEE
Q psy8823 34 QIKDIGGTVELKCSVQYA-QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYR 112 (386)
Q Consensus 34 ~~v~~G~~v~L~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 112 (386)
..+..|+...|.|.+..- ..+.++|-|-++.. ...+..+... ......+....-+.|.+..+-.+|.|.|+
T Consensus 13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~---cv~Le~~pq~-----~TsW~e~~nis~FvLhF~pvl~sDnGsYr 84 (104)
T d1xaua_ 13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTI---WVPLEVGPQL-----YTSWEENRSVPVFVLHFKPIHLSDNGSYS 84 (104)
T ss_dssp EEECTTSCEEEEEEEECSSSCCCEEEEEECSSS---EEECCCBTTE-----EEEEECSSSSCEEEEEETTCCGGGCEEEE
T ss_pred eeEecCCceEecCcchhhcCCCCcEEEEeCCcE---EEEeecCCcc-----ccchhhcCCeeEEEEEeeeeeecCCCceE
Confidence 347899999999999853 56789999966542 1111111111 01222333344568999999999999999
Q ss_pred EEeEEcccceeeeEEEEEE
Q psy8823 113 CQVIIGINNKISAEVDLQV 131 (386)
Q Consensus 113 C~~~~~~~~~~~~~~~l~v 131 (386)
|.+....+--.+..+.+.|
T Consensus 85 CSanf~s~vieSHSvti~V 103 (104)
T d1xaua_ 85 CSTNFNSQVINSHSVTIHV 103 (104)
T ss_dssp EEEEETTEEEECCCEEEEE
T ss_pred EecCCChhheecceEEEEe
Confidence 9998765544555555554
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.34 E-value=9.9e-07 Score=59.62 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=47.6
Q ss_pred CCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e---eC--------C-CCceE----EeeeEEEECCCCCCCCeE
Q psy8823 140 NSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A---IL--------P-TGGSI----YRGSILKIPQITKEDRGT 201 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~--------~-~~~~~----~~~~~l~i~~~~~~d~g~ 201 (386)
..+..+.+.+|++++|.|.........+.||+... . +. . ..+.. .....|.|.+++.+|++.
T Consensus 6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~ 85 (107)
T d1mexl1 6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAE 85 (107)
T ss_dssp CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheeccee
Confidence 44566788999999999987655555799997421 1 00 0 00101 123579999999999999
Q ss_pred EEEEEec
Q psy8823 202 YYCVAEN 208 (386)
Q Consensus 202 y~C~~~~ 208 (386)
|.|.+..
T Consensus 86 YyCa~~~ 92 (107)
T d1mexl1 86 YFCQQYN 92 (107)
T ss_dssp EEEEECS
T ss_pred EEEeECC
Confidence 9998754
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.33 E-value=9.7e-07 Score=60.68 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=52.5
Q ss_pred eCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCe---ee-ee--ec-CceeEEeeee--ecCceeeeEEEEeecccCCC
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDT---QQ-VL--TN-NQHYSISHFA--TADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~---~~-~~--~~-~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~ 300 (386)
..|....+.+|++++|.|.........+.|++-.. .. .+ .. ........+. ........+|+|.+++.+|+
T Consensus 5 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Ds 84 (114)
T d2cdea1 5 QSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS 84 (114)
T ss_dssp EECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGC
T ss_pred eeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhC
Confidence 34556667789999999998776666899996331 10 01 00 1111101111 11223467899999999999
Q ss_pred eEEEEEEEcCCC
Q psy8823 301 GSYICRAANKLG 312 (386)
Q Consensus 301 G~Y~C~a~n~~g 312 (386)
|.|.|.+....+
T Consensus 85 g~Y~Ca~~~~~~ 96 (114)
T d2cdea1 85 ASYICVVSDRGS 96 (114)
T ss_dssp SEEEEEEECSCT
T ss_pred cccceeeecCCC
Confidence 999999987543
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.33 E-value=1.3e-06 Score=58.98 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=48.9
Q ss_pred eCCCcccccCCCcEEEEEEEEecCCCeeEEEeCC--e-eee-eec--------CceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED--T-QQV-LTN--------NQHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~-~~~-~~~--------~~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
..|....+.+|++|+|.|.........+.|++-. . ... +.. ..++... .......|+|.++++
T Consensus 5 QsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~L~I~~~~~ 79 (106)
T d1a0ql1 5 QSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGS-----GSGRDYSFSISNLEP 79 (106)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEECSCCG
T ss_pred CcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEee-----cCCCEeeeEehhhcc
Confidence 3455566789999999999765555579998732 1 111 111 1111111 112356899999999
Q ss_pred CCCeEEEEEEEcC
Q psy8823 298 RQYGSYICRAANK 310 (386)
Q Consensus 298 ~d~G~Y~C~a~n~ 310 (386)
+|+|.|.|.+.+.
T Consensus 80 ~DsA~YyCa~~~~ 92 (106)
T d1a0ql1 80 EDIATYYCLQYYN 92 (106)
T ss_dssp GGCSEEEEEECSS
T ss_pred cCCEeEEEEEeCC
Confidence 9999999987653
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=98.33 E-value=3.5e-06 Score=55.75 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=42.2
Q ss_pred cCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 238 ALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
..++..+|.|.+.|+.++ .++|.+||.. ....... .............+....+..++...|+|.+.+..-..
T Consensus 16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~--~~~~~~~--~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~~ 90 (98)
T d1d5mb1 16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQE--EKTGVVS--TGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 90 (98)
T ss_dssp -----CEEEEEEEEEBSSCCEEEEEETTEE--CCSSEEE--CCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCSS
T ss_pred ccCCceEEEEEEeeeECCCcEEEEEECCEE--cCCCCEE--CeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCCC
Confidence 346677899999996544 7999999987 3322111 11111111123344444566788889999999986543
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.33 E-value=5.1e-06 Score=57.08 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=52.5
Q ss_pred EeeCCCcccccCCCcEEEEEEEEec-CCCeeEEEe--CC-eeeeee--cCceeEEeee-------eecCceeeeEEEEee
Q psy8823 228 ITVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIK--ED-TQQVLT--NNQHYSISHF-------ATADEFTDTTIRVIT 294 (386)
Q Consensus 228 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~--~~-~~~~~~--~~~~~~~~~~-------~~~~~~~~~~L~i~~ 294 (386)
+...+....+.+|++++|.|...+. ....+.|++ .+ ....+. .......... ..........|+|.+
T Consensus 3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (116)
T d1tvda_ 3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP 82 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence 3445566678899999999998654 455789986 22 221111 1111110000 001112345799999
Q ss_pred cccCCCeEEEEEEEcCCCce
Q psy8823 295 IEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~~g~~ 314 (386)
++.+|+|.|.|.+....+..
T Consensus 83 ~~~~Dsg~YyCa~~~~~~~~ 102 (116)
T d1tvda_ 83 VRTEDSATYYCAFTLPPPTD 102 (116)
T ss_dssp CCGGGCEEEEEEEECTTTTC
T ss_pred ccccccccceeeEecCCCCc
Confidence 99999999999887665443
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.32 E-value=1.1e-07 Score=64.22 Aligned_cols=90 Identities=16% Similarity=0.277 Sum_probs=55.7
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
+|.+.+.++......+..++|.|.+.|+ |.. .|.|.++|.. +...............+...+.|.|....+.+...
T Consensus 5 ~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~--~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ 82 (104)
T d1nfde2 5 SPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGAT--INDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNR 82 (104)
T ss_dssp CCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEE--ECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSC
T ss_pred CCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEE--CCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCE
Confidence 4555444333332345678999999985 433 8999999987 43332221111122233446677777777777778
Q ss_pred EEEEEEcCCCceee
Q psy8823 303 YICRAANKLGTSEK 316 (386)
Q Consensus 303 Y~C~a~n~~g~~~~ 316 (386)
|+|.|.+.....++
T Consensus 83 ytC~V~H~~~~~~k 96 (104)
T d1nfde2 83 VSCQVTHEGETVEK 96 (104)
T ss_dssp EEEEEECTTTTCCC
T ss_pred EEEEEEECCCcEEE
Confidence 99999998755433
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=98.32 E-value=8.7e-07 Score=60.37 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=58.6
Q ss_pred ccceeeecCCcEEEEEEEeeCCC---CcEEEEecCCcccccccc-c-cCCceeEE--eccceeeecCCCcceEEEEEccc
Q psy8823 31 SQEQIKDIGGTVELKCSVQYAQD---YPVIWMKVDRNKVTEPLP-I-STGSSLII--RDSRFAIRYDTASSTYTLLVKDI 103 (386)
Q Consensus 31 ~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~ 103 (386)
.....+++|++++|.|.+++... ..+.|+|.......+.+. + ..+..... ..+|+.+..+...+...|.|.++
T Consensus 7 SG~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l 86 (127)
T d3cx5j1 7 SGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSV 86 (127)
T ss_dssp EECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSC
T ss_pred ECCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecc
Confidence 34556889999999999997543 458999965443222221 1 22222111 13577777777888899999999
Q ss_pred CCCCCeEEEEEe
Q psy8823 104 QETDAGYYRCQV 115 (386)
Q Consensus 104 ~~~d~G~Y~C~~ 115 (386)
+.+|++.|.|..
T Consensus 87 ~~eDtAvYyCAr 98 (127)
T d3cx5j1 87 TTEDTATYYCAR 98 (127)
T ss_dssp CGGGCEEEEEEE
T ss_pred ccccceEEEeee
Confidence 999999999964
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=3.3e-07 Score=63.54 Aligned_cols=92 Identities=10% Similarity=0.141 Sum_probs=55.5
Q ss_pred CCCcccccCCCcEEEEEEEEecC---CCeeEEEeCCeee---ee-ec--------CceeEEeeeeecCceeeeEEEEeec
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYP---PPAIVWIKEDTQQ---VL-TN--------NQHYSISHFATADEFTDTTIRVITI 295 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p---~~~~~W~~~~~~~---~~-~~--------~~~~~~~~~~~~~~~~~~~L~i~~~ 295 (386)
.|..+.+.+|++|+|.|...... ...+.|++..... .+ .. ..+..+. .........|.|.++
T Consensus 5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~sL~I~~l 81 (116)
T d1xeda_ 5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT---NFPENGTFVVNIAQL 81 (116)
T ss_dssp CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEE---EETTTTEEEEEECSC
T ss_pred CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEe---eeCCCCEEEEEEhhh
Confidence 34456677999999999864321 2357798744221 11 11 1111111 111224568999999
Q ss_pred ccCCCeEEEEEEEcCCCceeeEEEEEEEec
Q psy8823 296 EKRQYGSYICRAANKLGTSEKTVELFESII 325 (386)
Q Consensus 296 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 325 (386)
+.+|+|.|.|.+..........+.|.|...
T Consensus 82 ~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~ 111 (116)
T d1xeda_ 82 SQDDSGRYKCGLGINSRGLSFDVSLEVLEH 111 (116)
T ss_dssp CGGGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred CcCCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence 999999999998766544455677777643
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.31 E-value=1.4e-06 Score=58.48 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=48.2
Q ss_pred CCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 239 LQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
....++|.|.+.|+.+. .+.|.+++.. .............++.+...+.|.|....+..+..|+|.|.+....
T Consensus 18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~--~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 92 (102)
T d1i1ca2 18 TQSQVSITCMVKGFYPPDIYTEWKMNGQP--QENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 92 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEE--CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred cCCeEEEEEEEEEEECCCCEEEEEECCee--ccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence 45689999999886444 7999999986 3222221111222233345667888777777777899999997543
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.31 E-value=8.1e-07 Score=59.96 Aligned_cols=67 Identities=21% Similarity=0.399 Sum_probs=46.5
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee-----------CCCC-ceE----EeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI-----------LPTG-GSI----YRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~-----------~~~~-~~~----~~~~~l~i~~~~~~d~g~y~ 203 (386)
|..+.+.+|++++|.|.........+.||+.. ... .... +.. .....|.|.++..+|+|.|.
T Consensus 8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (106)
T d1i8ka_ 8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYY 87 (106)
T ss_dssp CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEe
Confidence 45677889999999998865555579999742 111 0001 101 12457999999999999999
Q ss_pred EEEec
Q psy8823 204 CVAEN 208 (386)
Q Consensus 204 C~~~~ 208 (386)
|.+..
T Consensus 88 Ca~~~ 92 (106)
T d1i8ka_ 88 CLQSF 92 (106)
T ss_dssp EEECS
T ss_pred EecCc
Confidence 98764
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.31 E-value=1.5e-06 Score=58.70 Aligned_cols=68 Identities=22% Similarity=0.391 Sum_probs=46.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eC--------C-CCceEE----eeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----IL--------P-TGGSIY----RGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~--------~-~~~~~~----~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.........+.||+.... +. . ...... ....|.|.+++.+|+|.|.
T Consensus 8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Yy 87 (108)
T d1jhll_ 8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYI 87 (108)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEE
T ss_pred CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEE
Confidence 4567788999999999986555557999984211 00 0 000111 1347999999999999999
Q ss_pred EEEecC
Q psy8823 204 CVAENG 209 (386)
Q Consensus 204 C~~~~~ 209 (386)
|...+.
T Consensus 88 CA~~~~ 93 (108)
T d1jhll_ 88 CQQHNE 93 (108)
T ss_dssp EEECSS
T ss_pred EeeCCC
Confidence 976653
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=7.2e-07 Score=60.45 Aligned_cols=80 Identities=15% Similarity=0.207 Sum_probs=49.3
Q ss_pred ccccCCCcEEEEEEEEecCC----CeeEEEeCCeeeeeecCceeEEeeeeec----CceeeeEEEEeecccCCCeEEEEE
Q psy8823 235 LGQALQYDMDLECHVEAYPP----PAIVWIKEDTQQVLTNNQHYSISHFATA----DEFTDTTIRVITIEKRQYGSYICR 306 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~ 306 (386)
+.+..|+.++|.|....... ..+.|.+++..+................ ....+.+|.|.+++.+|+|.|.|.
T Consensus 4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~ 83 (105)
T d1dr9a1 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV 83 (105)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence 34668999999998753222 2578888776532222222211110000 011356899999999999999999
Q ss_pred EEcCCCce
Q psy8823 307 AANKLGTS 314 (386)
Q Consensus 307 a~n~~g~~ 314 (386)
+.+..+..
T Consensus 84 V~~~~~~~ 91 (105)
T d1dr9a1 84 VLKYEKDA 91 (105)
T ss_dssp EEECCTTS
T ss_pred EEeCCCCC
Confidence 98764433
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.31 E-value=6.6e-07 Score=60.23 Aligned_cols=67 Identities=27% Similarity=0.427 Sum_probs=46.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee---CC---------CCc----eEEeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI---LP---------TGG----SIYRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~---~~---------~~~----~~~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.........+.||+... .. .. ... .......|.|.+++.+|+|.|.
T Consensus 5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy 84 (103)
T d8faba1 5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY 84 (103)
T ss_dssp CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence 346789999999999988654445689998421 11 00 000 0112357999999999999999
Q ss_pred EEEec
Q psy8823 204 CVAEN 208 (386)
Q Consensus 204 C~~~~ 208 (386)
|.+..
T Consensus 85 CA~~~ 89 (103)
T d8faba1 85 CQAWD 89 (103)
T ss_dssp EEEEE
T ss_pred eeecC
Confidence 98764
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.7e-06 Score=58.89 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=46.7
Q ss_pred CceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCe--e---eC---------CCCceEE------eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--TPRISWRRENN--A---IL---------PTGGSIY------RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~--~---~~---------~~~~~~~------~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|...... ...+.|++... . +. ...+... ....|.|.+++.+|+
T Consensus 3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds 82 (108)
T d1hkfa_ 3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS 82 (108)
T ss_dssp CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence 3456788999999999875432 23578987321 1 00 0011111 134799999999999
Q ss_pred eEEEEEEecCCCC
Q psy8823 200 GTYYCVAENGVGK 212 (386)
Q Consensus 200 g~y~C~~~~~~~~ 212 (386)
|.|.|.+......
T Consensus 83 G~Y~C~v~~~~~~ 95 (108)
T d1hkfa_ 83 GHYWCRIYRPSDN 95 (108)
T ss_dssp EEEEEEEECTTTC
T ss_pred EEEEEEEecCCCC
Confidence 9999999865544
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=4.7e-06 Score=57.04 Aligned_cols=80 Identities=14% Similarity=0.275 Sum_probs=49.6
Q ss_pred eCCCcccccCCCcEEEEEEEEec-CCCeeEEEeC--Cee-eee-e--cC-------ceeEEeeeeecCceeeeEEEEeec
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKE--DTQ-QVL-T--NN-------QHYSISHFATADEFTDTTIRVITI 295 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~--~~~-~~~-~--~~-------~~~~~~~~~~~~~~~~~~L~i~~~ 295 (386)
..|..+.+.+|++++|.|...+. ....+.|++- +.. ..+ . .. .++... .........|.|.++
T Consensus 4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~---~~~~~~~~~L~I~~~ 80 (114)
T d3bp5a1 4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQII---QLPNRHDFHMNILDT 80 (114)
T ss_dssp EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEE---ECTTSSEEEEEESSC
T ss_pred ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEE---EeCCCCEEEEEECcc
Confidence 34556667899999999998553 3447889873 221 111 1 11 111111 111123467999999
Q ss_pred ccCCCeEEEEEEEcCCC
Q psy8823 296 EKRQYGSYICRAANKLG 312 (386)
Q Consensus 296 ~~~d~G~Y~C~a~n~~g 312 (386)
+.+|+|.|.|.+....+
T Consensus 81 ~~~Dsg~YyCa~~~~~~ 97 (114)
T d3bp5a1 81 RRNDSGIYLCGAISLHP 97 (114)
T ss_dssp CGGGCEEEEEEEECSSS
T ss_pred CcCCCeEEEEEEEeCCC
Confidence 99999999998875543
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.28 E-value=8.4e-07 Score=59.91 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=47.1
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eC--------CC-Cce----EEeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----IL--------PT-GGS----IYRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~--------~~-~~~----~~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.........+.||+.... +. .. ... ......|.|.+++.+|+|.|.
T Consensus 7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy 86 (106)
T d1op3k1 7 PSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYH 86 (106)
T ss_dssp CSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEE
T ss_pred CCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEe
Confidence 5677899999999999886655567999984311 10 00 010 112357999999999999999
Q ss_pred EEEec
Q psy8823 204 CVAEN 208 (386)
Q Consensus 204 C~~~~ 208 (386)
|.+..
T Consensus 87 Ca~~~ 91 (106)
T d1op3k1 87 CQHYA 91 (106)
T ss_dssp EEEEC
T ss_pred eeeCC
Confidence 98764
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=3.2e-06 Score=55.31 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=41.6
Q ss_pred CCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 239 LQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.++.++|.|.+.|+ |+. .++|.+||..........................|. +...+...|+|.+.+..-
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~---v~~~~~~~ytC~V~H~sl 86 (94)
T d1de4a1 14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLA---VPPGEEQRYTCQVEHPGL 86 (94)
T ss_dssp CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEE---ECTTCGGGEEEEEECTTS
T ss_pred CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEE---ECCCCCCEEEEEEEeCCC
Confidence 35678999999995 544 899999998832222121122211111122233333 444566679999999743
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.26 E-value=1.9e-06 Score=58.25 Aligned_cols=68 Identities=24% Similarity=0.409 Sum_probs=47.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----e--------CCCCceE-----EeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----I--------LPTGGSI-----YRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~--------~~~~~~~-----~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++|+|.|.........+.||+.... + ....... .....|.|.++..+|+|.|.
T Consensus 8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (107)
T d1d5il1 8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY 87 (107)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence 4567788999999999886555567899974211 0 0000111 12358999999999999999
Q ss_pred EEEecC
Q psy8823 204 CVAENG 209 (386)
Q Consensus 204 C~~~~~ 209 (386)
|.....
T Consensus 88 Ca~~~~ 93 (107)
T d1d5il1 88 CLQYDE 93 (107)
T ss_dssp EEECSS
T ss_pred eeeccC
Confidence 987643
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.25 E-value=1.4e-06 Score=59.95 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=48.1
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee---C---C------CCceEE------eeeEEEECCCCCCCCe
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI---L---P------TGGSIY------RGSILKIPQITKEDRG 200 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~---~---~------~~~~~~------~~~~l~i~~~~~~d~g 200 (386)
.+..+.+.+|++++|.|.........+.|||... .. . . ...... ....|.|.+++.+|+|
T Consensus 7 ~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg 86 (115)
T d1lp9e1 7 TEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSA 86 (115)
T ss_dssp CCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCE
T ss_pred CCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCc
Confidence 3566779999999999998766666799998421 10 0 0 000001 1346999999999999
Q ss_pred EEEEEEecC
Q psy8823 201 TYYCVAENG 209 (386)
Q Consensus 201 ~y~C~~~~~ 209 (386)
.|.|.+...
T Consensus 87 ~YyCa~~~~ 95 (115)
T d1lp9e1 87 LYYCALFLA 95 (115)
T ss_dssp EEEEEEEEC
T ss_pred cceEEEEcC
Confidence 999988654
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.25 E-value=1.5e-06 Score=58.69 Aligned_cols=67 Identities=25% Similarity=0.415 Sum_probs=46.8
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eC--------C-CCceE----EeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----IL--------P-TGGSI----YRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~--------~-~~~~~----~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++|+|.|.........+.||+.... +. . ..... .....|.|.+++.+|+|.|.
T Consensus 8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Yy 87 (107)
T d1tjgl1 8 PSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYY 87 (107)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEE
Confidence 5667789999999999986555567899984311 10 0 00111 12457999999999999999
Q ss_pred EEEec
Q psy8823 204 CVAEN 208 (386)
Q Consensus 204 C~~~~ 208 (386)
|...+
T Consensus 88 Ca~~~ 92 (107)
T d1tjgl1 88 CQQLH 92 (107)
T ss_dssp EEECS
T ss_pred EEECc
Confidence 97654
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=5.5e-06 Score=55.59 Aligned_cols=80 Identities=11% Similarity=0.207 Sum_probs=48.9
Q ss_pred cCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccC--CCeEEEEEEEcCCCc
Q psy8823 238 ALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKR--QYGSYICRAANKLGT 313 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~--d~G~Y~C~a~n~~g~ 313 (386)
...+.++|.|.+.|+ |.. .|+|.+++.. ..............+.+...+.|+|...+.. ....|+|.|.+..+.
T Consensus 19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~--~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~ 96 (105)
T d1dn0b2 19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNS--DISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN 96 (105)
T ss_dssp --CCSEEEEEEEEEEBSSCCEEEEEETTSC--EECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred CCCCceEEEEEEecccCCcEEEEEEECCcc--ccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence 345789999999985 443 8999999876 3222211111112223344567777666654 235799999999877
Q ss_pred eeeEEE
Q psy8823 314 SEKTVE 319 (386)
Q Consensus 314 ~~~~~~ 319 (386)
.+..+.
T Consensus 97 ~~~~v~ 102 (105)
T d1dn0b2 97 KEKNVP 102 (105)
T ss_dssp EEEEEE
T ss_pred EEeEEe
Confidence 666553
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.25 E-value=1.9e-06 Score=58.51 Aligned_cols=67 Identities=22% Similarity=0.407 Sum_probs=46.7
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eC--------CCCceE-----EeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----IL--------PTGGSI-----YRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~--------~~~~~~-----~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|...+.....+.||+.... +. ...... .....|.|.+++.+|+|.|.
T Consensus 10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Yy 89 (109)
T d1bwwa_ 10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYY 89 (109)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEE
Confidence 4567789999999999987655567899984211 10 000011 11347999999999999999
Q ss_pred EEEec
Q psy8823 204 CVAEN 208 (386)
Q Consensus 204 C~~~~ 208 (386)
|.+..
T Consensus 90 CA~~~ 94 (109)
T d1bwwa_ 90 CQQYQ 94 (109)
T ss_dssp EEECS
T ss_pred EeecC
Confidence 98764
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4.6e-06 Score=54.76 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 239 LQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.|+.++|.|.+.|+.+. .++|.+||.. .............+. .........+...+...|+|.+.+..-..
T Consensus 14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~--~~~~~~~~~~~~~~~---t~~~~s~l~~~~~~~~~ytC~V~H~sl~~ 86 (94)
T d1t7va1 14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEV--QEPELRGDVLHNGNG---TYQSWVVVAVPPQDTAPYSCHVQHSSLAQ 86 (94)
T ss_dssp TTSCEEEEEEEEEEBSSCEEEEEEETTEE--CCCSEEEEEEETTTT---EEEEEEEEEECTTCCSCEEEEEEETTCSS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEE--CCCcEEeeeecCCCC---eEEEEEEeEeCCCCCCEEEEEEEECCCCC
Confidence 46789999999995443 7999999987 433322222211111 23333444455666678999999975443
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.23 E-value=1.8e-06 Score=59.11 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=52.0
Q ss_pred eeCCCcccccCCCcEEEEEEEEecCCCeeEEEeC--Ceee-e-e--ecCceeEEe---eeeecCceeeeEEEEeecccCC
Q psy8823 229 TVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKE--DTQQ-V-L--TNNQHYSIS---HFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 229 ~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~-~-~--~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d 299 (386)
...|....+.+|+.++|.|...+.....+.|++- +... . + ......... ............|.|.+++.+|
T Consensus 4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D 83 (113)
T d2bnqd1 4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGD 83 (113)
T ss_dssp ECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred EeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCC
Confidence 3345566778899999999987665557899973 2211 0 1 111111000 0011112246689999999999
Q ss_pred CeEEEEEEEcCCC
Q psy8823 300 YGSYICRAANKLG 312 (386)
Q Consensus 300 ~G~Y~C~a~n~~g 312 (386)
+|.|.|.+....+
T Consensus 84 sg~YyCa~~~~~~ 96 (113)
T d2bnqd1 84 SATYLCAVRPTSG 96 (113)
T ss_dssp CEEEEEEEEESSS
T ss_pred CcEEeEeEecCCC
Confidence 9999999976554
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.22 E-value=7.3e-06 Score=54.26 Aligned_cols=77 Identities=9% Similarity=-0.017 Sum_probs=49.5
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+ ...+..|++|+|.|... .+...+.|+|+|........... .......+.|..+...|+|+|+
T Consensus 6 kPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~--------~~~~~~~f~~~~~~~~~~G~Y~ 75 (99)
T d1nkra2 6 KPSLSAQP-GPTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGP--------KVNGTFQADFPLGPATHGGTYR 75 (99)
T ss_dssp CCEEEEES-CSEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEE--------EETTEEEEEEEEEECCSCEEEE
T ss_pred CCEEEEeC-CCcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccc--------cCCccEEEEEeccccccCEEEE
Confidence 45555544 34677899999999863 34558999999865221111100 0012455778888889999999
Q ss_pred EEEEcCC
Q psy8823 305 CRAANKL 311 (386)
Q Consensus 305 C~a~n~~ 311 (386)
|......
T Consensus 76 C~y~~~~ 82 (99)
T d1nkra2 76 CFGSFHD 82 (99)
T ss_dssp EEEEETT
T ss_pred EEeecCC
Confidence 9866443
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.22 E-value=8.3e-06 Score=54.24 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=46.6
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
...|+..+|.|.+.|+.+. .+.|.+||.. .............+..+...+.|.+. .++...|+|.+.+..-..
T Consensus 15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~--~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~~l~~ 89 (103)
T d1hdma1 15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVP--VEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFSCIVTHEPDRY 89 (103)
T ss_dssp CCTTSCEEEEEEEEEEBSSCEEEEEEETTEE--CSSCCCEEEEEETTTEEEEEEEEEEC---CCTTCCEEEEEEETTTTE
T ss_pred hhcCCCeEEEEEEeeEECCCCEEEEEECCee--cCCcEeceEEeCCCCcEEEEEEEEEe---cCCCCEEEEEEEeCCCCC
Confidence 3467888999999996444 7999999987 33332222222223333344556554 345557999999985444
Q ss_pred e
Q psy8823 315 E 315 (386)
Q Consensus 315 ~ 315 (386)
.
T Consensus 90 p 90 (103)
T d1hdma1 90 T 90 (103)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=98.20 E-value=5.5e-06 Score=54.81 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=51.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.+.+.+.. .+..|+.++|.|.+.+. +...|+|+++|..+...... .......++.|... ..|.+
T Consensus 2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~---t~~~~~~dgtf~~~-------s~l~v 70 (100)
T d1muja1 2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYE---TSFFVNRDYSFHKL-------SYLTF 70 (100)
T ss_dssp CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEE---CCCEECTTSCEEEE-------EEEEE
T ss_pred CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCcee---eeeEECCCCCEEEE-------EEeEE
Confidence 46788876544 35678999999999974 45679999998776322111 11111222333332 14544
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
. .++.+.|+|++.+..
T Consensus 71 ~---~~~~~~ytC~V~H~s 86 (100)
T d1muja1 71 I---PSDDDIYDCKVEHWG 86 (100)
T ss_dssp C---CCTTCCEEEEEECTT
T ss_pred c---CCCCCEEEEEEEECC
Confidence 3 456778999998653
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=3.4e-06 Score=57.19 Aligned_cols=85 Identities=16% Similarity=0.365 Sum_probs=54.3
Q ss_pred cceEee-CCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEe--e---eeecCceeeeEEEEeecc
Q psy8823 225 APVITV-PKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSIS--H---FATADEFTDTTIRVITIE 296 (386)
Q Consensus 225 ~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~L~i~~~~ 296 (386)
+|.+.+ .+.......++.++|.|.+.|+ |.. .|.|+++|.. +......... . ..+..+...+.|.|..-.
T Consensus 4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~--~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~ 81 (108)
T d1ow0a2 4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE--LPREKYLTWASRQEPSQGTTTFAVTSILRVAAED 81 (108)
T ss_dssp CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEE--CCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHH
T ss_pred CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeE--cCCCceEcccceecccCCCCcEEEEEEEEEcHHH
Confidence 455443 3334455678899999999986 433 8999999987 3332221111 1 112223356678887777
Q ss_pred cCCCeEEEEEEEcCC
Q psy8823 297 KRQYGSYICRAANKL 311 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~~ 311 (386)
++.+..|+|.|.+..
T Consensus 82 w~~g~~ytC~V~H~s 96 (108)
T d1ow0a2 82 WKKGDTFSCMVGHEA 96 (108)
T ss_dssp HHHTCCEEEEEECTT
T ss_pred hCCCCEEEEEEEeCC
Confidence 777778999999875
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.20 E-value=5.5e-06 Score=55.88 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=53.8
Q ss_pred cceEeeCCC-cccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKP-RLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+|.+.+.++ ......+..++|.|.+.|+.+. .++|.++|.. ................+...+.|.+...... .
T Consensus 8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~--~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~--~ 83 (107)
T d1hxmb2 8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSN--TILGSQEGNTMKTNDTYMKFSWLTVPEKSLD--K 83 (107)
T ss_dssp SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSC--CCCCCEECCCEECSSSEEEEEEEEECTGGGG--S
T ss_pred CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeE--ccCCEEccceecCCCeEEEEEEEEEecccCC--C
Confidence 455444333 3345567889999999986444 7999999887 3322222111122223334566666554442 3
Q ss_pred EEEEEEEcCCCceeeEEE
Q psy8823 302 SYICRAANKLGTSEKTVE 319 (386)
Q Consensus 302 ~Y~C~a~n~~g~~~~~~~ 319 (386)
.|+|.+.+..........
T Consensus 84 ~ytC~V~H~s~~~~i~~~ 101 (107)
T d1hxmb2 84 EHRCIVRHENNKNGVDQE 101 (107)
T ss_dssp CEEEEEEETTSGGGSCEE
T ss_pred eEEEEEEECCCCCCCceE
Confidence 599999998766544333
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.4e-06 Score=56.90 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=54.2
Q ss_pred cCCeeecCCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCCCCCeEEEEEEecCC--
Q psy8823 133 RPPVISDNSTRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITKEDRGTYYCVAENGV-- 210 (386)
Q Consensus 133 ~~p~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-- 210 (386)
.+|.+...+. ..+..|++|+|.|.... ....+.|+|+|...............+.|.+++..|+|.|+|......
T Consensus 3 pkPsLsa~P~--~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~ 79 (93)
T d1olla2 3 DTPTLSVHPG--PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHA 79 (93)
T ss_dssp CCCEEEEESC--SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTE
T ss_pred CCCEEEEeCC--CcccCCCcEEEEECCCC-CCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeECCCCC
Confidence 3455544332 24788999999998742 456799999875432111111134579999999999999999754321
Q ss_pred CCceeeeEEEEE
Q psy8823 211 GKGTRRNIAVEV 222 (386)
Q Consensus 211 ~~~~~~~~~l~v 222 (386)
.+..+..+.|.|
T Consensus 80 wS~~SdpLeL~V 91 (93)
T d1olla2 80 WSFPSEPVKLLV 91 (93)
T ss_dssp ECCCCCCEEEEE
T ss_pred cCCCCCCEEEEe
Confidence 122344555544
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.19 E-value=2.4e-06 Score=57.91 Aligned_cols=69 Identities=20% Similarity=0.378 Sum_probs=46.8
Q ss_pred CCCceEEEeCCccEEEEEEeeee-CCCeEEEEEcCee-----eC--------CC-CceE----EeeeEEEECCCCCCCCe
Q psy8823 140 NSTRSLVVSEGQPVQLECFAGGH-PTPRISWRRENNA-----IL--------PT-GGSI----YRGSILKIPQITKEDRG 200 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~-----~~--------~~-~~~~----~~~~~l~i~~~~~~d~g 200 (386)
+.+..+.+.+|++++|.|..... ....+.||+.... +. .. .... .....|.|.++..+|+|
T Consensus 6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa 85 (108)
T d2fx7l1 6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA 85 (108)
T ss_dssp CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence 44667789999999999987543 2346889985311 10 00 0001 12357999999999999
Q ss_pred EEEEEEec
Q psy8823 201 TYYCVAEN 208 (386)
Q Consensus 201 ~y~C~~~~ 208 (386)
.|.|.+..
T Consensus 86 ~YyCa~~~ 93 (108)
T d2fx7l1 86 VYYCQQYG 93 (108)
T ss_dssp EEEEEECS
T ss_pred EEeeecCC
Confidence 99998754
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.19 E-value=6.4e-06 Score=56.21 Aligned_cols=78 Identities=12% Similarity=0.225 Sum_probs=50.4
Q ss_pred eCCCcccccCCCcEEEEEEEEec--CCCeeEEEeC--Cee--eeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAY--PPPAIVWIKE--DTQ--QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
..|......+|++++|.|...+. ....+.|++. +.. ..+....++...... ......|+|.+++.+|+|.|
T Consensus 5 Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~l~~~Dsa~Y 81 (113)
T d1vesa_ 5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNK---GSKSFSLRISDLRVEDSGTY 81 (113)
T ss_dssp EECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEET---TTTEEEEEECSCCGGGCEEE
T ss_pred eeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeEC---CCCceeeeecccccCCcceE
Confidence 34555667799999999998753 3346889863 221 112233333322211 12356899999999999999
Q ss_pred EEEEEcC
Q psy8823 304 ICRAANK 310 (386)
Q Consensus 304 ~C~a~n~ 310 (386)
.|.+...
T Consensus 82 yCa~~~~ 88 (113)
T d1vesa_ 82 KCQAFYS 88 (113)
T ss_dssp EEEEEEE
T ss_pred eeeeecc
Confidence 9998643
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.17 E-value=1.6e-05 Score=52.07 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=50.2
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+ ...+..|++|+|.|... .....+.++|++......... ...........+.|.+++..|+|+|+
T Consensus 2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~------~~~~~~~~~a~F~l~~v~~~~~G~Y~ 73 (96)
T d1nkra1 2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLI------GEHHDGVSKANFSISRMTQDLAGTYR 73 (96)
T ss_dssp CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEE------CEEETTEEEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeee------eeecCCceEEEEEEcccCcccCeEEE
Confidence 35555443 45677899999999963 334478898887642111100 00111124577999999999999999
Q ss_pred EEEEcC
Q psy8823 305 CRAANK 310 (386)
Q Consensus 305 C~a~n~ 310 (386)
|.....
T Consensus 74 C~y~~~ 79 (96)
T d1nkra1 74 CYGSVT 79 (96)
T ss_dssp EEEEBT
T ss_pred EEEEcC
Confidence 987644
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.17 E-value=7.5e-06 Score=56.15 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=50.3
Q ss_pred eCCCcccccCCCcEEEEEEEEecCCCeeEEEeCC--ee-e-eeecCceeEEee------eeecCceeeeEEEEeecccCC
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED--TQ-Q-VLTNNQHYSISH------FATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~-~-~~~~~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d 299 (386)
..+....+.+|+.++|.|.........+.|++-. .. . .+.......... ...........|+|.+++.+|
T Consensus 5 Q~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 84 (115)
T d1j8hd1 5 QLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSD 84 (115)
T ss_dssp CSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGG
T ss_pred cCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccC
Confidence 3455567789999999999876656679999732 11 1 111110000000 000111234579999999999
Q ss_pred CeEEEEEEEcCC
Q psy8823 300 YGSYICRAANKL 311 (386)
Q Consensus 300 ~G~Y~C~a~n~~ 311 (386)
+|.|.|.+....
T Consensus 85 sa~YyCa~~~~~ 96 (115)
T d1j8hd1 85 AAEYFCAVSESP 96 (115)
T ss_dssp CEEEEEEEESST
T ss_pred CccceeeecCCC
Confidence 999999997653
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=98.17 E-value=1.9e-05 Score=52.29 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=47.8
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCe
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
+|.+.+.+.. ....|+.++|.|.+.|+ |.. .++|.+||.. +..+... ......+..+...+.|.+.. .+..
T Consensus 5 ~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~--~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~ 78 (101)
T d1fnga1 5 APEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRP--VTEGVSETVFLPRDDHLFRKFHYLTFLP---STDD 78 (101)
T ss_dssp CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEE--ECSSEEECCCEECSSSCEEEEEEEEECC---CTTC
T ss_pred CCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCee--cCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCC
Confidence 4554443222 23457788999999986 433 8999999987 4332111 11111222233445555543 4455
Q ss_pred EEEEEEEcCCC
Q psy8823 302 SYICRAANKLG 312 (386)
Q Consensus 302 ~Y~C~a~n~~g 312 (386)
.|+|.+.+..-
T Consensus 79 ~ytC~V~H~sl 89 (101)
T d1fnga1 79 FYDCEVDHWGL 89 (101)
T ss_dssp CEEEEEECTTC
T ss_pred EEEEEEEECCC
Confidence 79999999754
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.16 E-value=5.3e-06 Score=56.89 Aligned_cols=85 Identities=15% Similarity=0.264 Sum_probs=50.9
Q ss_pred eeCCCcccccCCCcEEEEEEEEec-CCCeeEEEeC--Cee-eeee---cCc-eeEEe---eeeecCceeeeEEEEeeccc
Q psy8823 229 TVPKPRLGQALQYDMDLECHVEAY-PPPAIVWIKE--DTQ-QVLT---NNQ-HYSIS---HFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 229 ~~~~~~~~~~~g~~~~l~C~~~g~-p~~~~~W~~~--~~~-~~~~---~~~-~~~~~---~~~~~~~~~~~~L~i~~~~~ 297 (386)
...+....+.+|++|+|.|..... ....+.|++- +.. ..+. ... ..... ............|.|.+++.
T Consensus 4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 83 (114)
T d2ak4d1 4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV 83 (114)
T ss_dssp ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence 334556667899999999987543 3446889872 222 1111 100 00000 01111122456899999999
Q ss_pred CCCeEEEEEEEcCCCc
Q psy8823 298 RQYGSYICRAANKLGT 313 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~g~ 313 (386)
+|+|.|.|.+....+.
T Consensus 84 ~Dsg~YyCa~~~~~~~ 99 (114)
T d2ak4d1 84 VDSAVYFCALSGFYNT 99 (114)
T ss_dssp GGCEEEEEEEECSBTT
T ss_pred ccCCCceEeCCCCCCC
Confidence 9999999988766543
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.15 E-value=1.3e-05 Score=52.70 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=44.8
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCce-eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQH-YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
...++.++|.|.+.|+.+. .++|.+||.. +..... .......+..+...+.|.+ ..++...|+|.+.+....
T Consensus 14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~--~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~ytC~V~H~sl~ 88 (98)
T d1hdmb1 14 FNTREPVMLACYVWGFYPAEVTITWRKNGKL--VMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTYTCVVEHIGAP 88 (98)
T ss_dssp CSSSCSEEEEEEEEEEBSSCCEEEEEETTEE--CCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTTSS
T ss_pred ccCCCcEEEEEEEEEEECCCCEEEEEECCEe--ccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEEEEEEEeCCCC
Confidence 3456789999999996443 8999999987 432221 1111122222233444554 455566799999998654
Q ss_pred e
Q psy8823 314 S 314 (386)
Q Consensus 314 ~ 314 (386)
.
T Consensus 89 ~ 89 (98)
T d1hdmb1 89 E 89 (98)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.14 E-value=6.1e-06 Score=56.07 Aligned_cols=79 Identities=13% Similarity=0.288 Sum_probs=47.8
Q ss_pred CcccccCCCcEEEEEEEEecC-CCeeEEEeC--Cee-eee-ec-Cce--eEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 233 PRLGQALQYDMDLECHVEAYP-PPAIVWIKE--DTQ-QVL-TN-NQH--YSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~--~~~-~~~-~~-~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+.+.+.+|++++|.|...+.. ...+.|++. +.. ..+ .. ... ................|.|.+++.+|+|.|.
T Consensus 6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 85 (110)
T d2esvd1 6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY 85 (110)
T ss_dssp SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence 456678899999999975433 346889973 221 111 10 000 0000111112235678999999999999999
Q ss_pred EEEEcCC
Q psy8823 305 CRAANKL 311 (386)
Q Consensus 305 C~a~n~~ 311 (386)
|.+....
T Consensus 86 Ca~~~~~ 92 (110)
T d2esvd1 86 CIVVRSS 92 (110)
T ss_dssp EEEEESC
T ss_pred EEEeCCC
Confidence 9986543
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.13 E-value=2.9e-06 Score=58.36 Aligned_cols=67 Identities=24% Similarity=0.435 Sum_probs=46.0
Q ss_pred CceEEEeCCccEEEEEEeeee-CCCeEEEEEcC-----eee------CCC----------Cce-EE------eeeEEEEC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH-PTPRISWRREN-----NAI------LPT----------GGS-IY------RGSILKIP 192 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~-----~~~------~~~----------~~~-~~------~~~~l~i~ 192 (386)
+..+.+.+|++++|.|.+.+. ....+.|++.. +.+ ... ... .. ....|.|.
T Consensus 5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 84 (115)
T d2atpb1 5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM 84 (115)
T ss_dssp CSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence 456779999999999998653 34568999742 111 000 000 00 13479999
Q ss_pred CCCCCCCeEEEEEEec
Q psy8823 193 QITKEDRGTYYCVAEN 208 (386)
Q Consensus 193 ~~~~~d~g~y~C~~~~ 208 (386)
+++.+|+|.|.|.+..
T Consensus 85 ~~~~~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 85 NVKPEDSDFYFCATVG 100 (115)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred ccCCCCCcEEEEeEcC
Confidence 9999999999998764
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.12 E-value=3.6e-06 Score=56.93 Aligned_cols=67 Identities=25% Similarity=0.403 Sum_probs=46.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee-----eCCC---------Cce----EEeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA-----ILPT---------GGS----IYRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-----~~~~---------~~~----~~~~~~l~i~~~~~~d~g~y~ 203 (386)
|..+.+.+|++++|.|.........+.||+.... +... ... ......|.|.+++.+|+|.|.
T Consensus 8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Yy 87 (109)
T d1mqkl_ 8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY 87 (109)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEE
Confidence 5667788999999999986554556999983211 1000 000 112457999999999999999
Q ss_pred EEEec
Q psy8823 204 CVAEN 208 (386)
Q Consensus 204 C~~~~ 208 (386)
|.+..
T Consensus 88 CA~~~ 92 (109)
T d1mqkl_ 88 CQHHY 92 (109)
T ss_dssp EEECS
T ss_pred EeeeC
Confidence 98764
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.12 E-value=4.5e-06 Score=55.64 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=46.4
Q ss_pred cCCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 238 ALQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
..++.++|.|.+.|+ |.. .|.|.+++........... ..++.+...+.|+|..-... .|.|+|.+.+......
T Consensus 18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~----~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~ 92 (101)
T d1kcvh2 18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV----LQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTA 92 (101)
T ss_dssp TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE----EETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEE
T ss_pred cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee----cCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCee
Confidence 457899999999985 433 8999887754211111111 11222334567777666654 5789999999866544
Q ss_pred e
Q psy8823 316 K 316 (386)
Q Consensus 316 ~ 316 (386)
.
T Consensus 93 v 93 (101)
T d1kcvh2 93 A 93 (101)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.12 E-value=6.2e-06 Score=56.58 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=49.4
Q ss_pred eCCCcccccCCCcEEEEEEEEecCCCeeEEEeC--Cee--eeee-cCceeEEe-----eeeecCceeeeEEEEeecccCC
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKE--DTQ--QVLT-NNQHYSIS-----HFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~--~~~~-~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d 299 (386)
.++..+.+.+|++++|.|.........+.|++- +.. ..+. ........ ............|.|.+++.+|
T Consensus 5 Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 84 (115)
T d1i9ea_ 5 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSD 84 (115)
T ss_dssp CCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGG
T ss_pred cCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccc
Confidence 344556778999999999987665667889862 221 1111 00100000 0011112235679999999999
Q ss_pred CeEEEEEEEcC
Q psy8823 300 YGSYICRAANK 310 (386)
Q Consensus 300 ~G~Y~C~a~n~ 310 (386)
+|.|.|.+...
T Consensus 85 sg~YyCa~~~~ 95 (115)
T d1i9ea_ 85 SAVYFCAVSGF 95 (115)
T ss_dssp CEEEEEEEEET
T ss_pred cceecccccCC
Confidence 99999987643
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=2.8e-06 Score=58.22 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=49.8
Q ss_pred EeeCCCcccccCCCcEEEEEEEEecC-CCeeEEEeCCee-----e-eee-cCceeEE-e-----eeeecCceeeeEEEEe
Q psy8823 228 ITVPKPRLGQALQYDMDLECHVEAYP-PPAIVWIKEDTQ-----Q-VLT-NNQHYSI-S-----HFATADEFTDTTIRVI 293 (386)
Q Consensus 228 ~~~~~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~~~~-----~-~~~-~~~~~~~-~-----~~~~~~~~~~~~L~i~ 293 (386)
+...|....+.+|++|+|.|.+.+.. ...+.|++-... + .+. ....... . .+..........|+|.
T Consensus 3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~ 82 (114)
T d1akjd_ 3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS 82 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence 34456677888999999999986543 346899873311 1 111 0100000 0 0000011124679999
Q ss_pred ecccCCCeEEEEEEEc
Q psy8823 294 TIEKRQYGSYICRAAN 309 (386)
Q Consensus 294 ~~~~~d~G~Y~C~a~n 309 (386)
+++.+|+|.|.|.+..
T Consensus 83 ~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 83 DFRRENEGYYFCSALS 98 (114)
T ss_dssp SCCGGGCEEEEEEEEE
T ss_pred cCCCCCCEEEeEeEcC
Confidence 9999999999999864
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.11 E-value=5.8e-06 Score=56.96 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=49.7
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeC--Ceee-eee---cCceeEEe------ee-eecCceeeeEEEEeeccc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKE--DTQQ-VLT---NNQHYSIS------HF-ATADEFTDTTIRVITIEK 297 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~~-~~~---~~~~~~~~------~~-~~~~~~~~~~L~i~~~~~ 297 (386)
.+....+.+|++++|.|...+.....+.|++- +... .+. ........ .+ ..........|.|.+++.
T Consensus 7 ~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~ 86 (118)
T d2ij0c1 7 HPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHP 86 (118)
T ss_dssp ECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCG
T ss_pred cCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccc
Confidence 34455677899999999987665668999973 2221 110 00000000 00 111122346799999999
Q ss_pred CCCeEEEEEEEcCC
Q psy8823 298 RQYGSYICRAANKL 311 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~ 311 (386)
+|+|.|.|.+....
T Consensus 87 ~Dsa~YyCa~~~~~ 100 (118)
T d2ij0c1 87 EDSGFYVCSALAGS 100 (118)
T ss_dssp GGCEEEEEEEECSS
T ss_pred ccCceEEEEEecCC
Confidence 99999999986543
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=98.10 E-value=3.5e-05 Score=50.77 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=43.1
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...|+..+|.|.+.|+.+. .++|.+||.. +..+... ......+..+...+.|.+. ..+...|+|.+.+..-
T Consensus 16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~--~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl 89 (99)
T d1uvqa1 16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQS--VTEGVSETSFLSKSDHSFFKISYLTFL---PSADEIYDCKVEHWGL 89 (99)
T ss_dssp CCTTSCEEEEEEEEEECSSCCEEEEEETTEE--ECTTEEECCCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECTTS
T ss_pred ccCCCcEEEEEEEEEEECCCCEEEEEECCEe--ccCCcEecceEECCCCCEEEEEEEEEc---CCCCCEEEEEEEeCCC
Confidence 3457789999999997444 7999999987 4332211 1111112222234445544 4455679999998753
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.10 E-value=8e-06 Score=53.06 Aligned_cols=70 Identities=11% Similarity=0.177 Sum_probs=43.8
Q ss_pred CCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 240 QYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 240 g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
+..++|.|.+.|+ |.. .++|.++|.. .... ........+..+...+.|.+. .++...|+|.+.+..-...
T Consensus 15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~--~~~~-~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~sL~~p 86 (91)
T d3frua1 15 SGSSVLTCAAFSFYPPELKFRFLRNGLA--SGSG-NCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEGLAQP 86 (91)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEE--CCCC-EEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTSSSC
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEe--CCcc-CccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCCCCCC
Confidence 4578999999996 443 8999999977 3322 222222233333344555554 4455679999998754433
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.10 E-value=1.1e-05 Score=54.79 Aligned_cols=78 Identities=9% Similarity=0.223 Sum_probs=50.0
Q ss_pred CCCcccccCCCcEEEEEEEEec--CCCeeEEEeCC---ee-eeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAY--PPPAIVWIKED---TQ-QVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~--p~~~~~W~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
.|..+....|+.++|.|...+. ....+.|++.. .+ ..+....++..... .......|+|.+++.+|+|.|.
T Consensus 5 ~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~---~~~~~~~L~I~~l~~~Dsa~Yy 81 (112)
T d1sq2n_ 5 TPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVN---SGSKSFSLRINDLTVEDGGTYR 81 (112)
T ss_dssp ECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEE---TTTTEEEEEECSCCGGGCEEEE
T ss_pred cCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEe---cCCceeeeEecCCcCccCEEEe
Confidence 3445567789999999998543 34578999732 11 11222333322211 1123568999999999999999
Q ss_pred EEEEcCC
Q psy8823 305 CRAANKL 311 (386)
Q Consensus 305 C~a~n~~ 311 (386)
|.+....
T Consensus 82 CA~~~~~ 88 (112)
T d1sq2n_ 82 CGLGVAG 88 (112)
T ss_dssp EEECBTT
T ss_pred EEEecCC
Confidence 9876543
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=98.10 E-value=3.7e-06 Score=55.32 Aligned_cols=69 Identities=20% Similarity=0.347 Sum_probs=43.1
Q ss_pred CCCcEEEEEEEEec-CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 239 LQYDMDLECHVEAY-PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
.++.++|.|.+.|+ |.. .++|.+++.. .............++.+...+.|.+.. ++...|+|.+.+..-
T Consensus 15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~--~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sL 85 (96)
T d2h26a1 15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQE--QQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSSL 85 (96)
T ss_dssp STTEEEEEEEEEEEBSSCEEEEEEETTEE--CTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGGG
T ss_pred CCCeEEEEEEEEEEECCCcEEEEEECccc--CCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCCC
Confidence 45689999999985 444 7999999876 333222222222233333455566654 455579999998753
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.10 E-value=7.1e-06 Score=55.69 Aligned_cols=68 Identities=26% Similarity=0.416 Sum_probs=45.0
Q ss_pred CceEEEeCCccEEEEEEeeee----CCCeEEEEEcC--eee---C--------C-CCceEE----eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH----PTPRISWRREN--NAI---L--------P-TGGSIY----RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~~--~~~---~--------~-~~~~~~----~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++|+|.|..... ....+.||+.. ... . . ..+... ....|.|.+++.+|+
T Consensus 8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~Ds 87 (111)
T d2gsia1 8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDA 87 (111)
T ss_dssp CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCC
Confidence 456788999999999987432 12348999842 111 0 0 001111 135799999999999
Q ss_pred eEEEEEEecC
Q psy8823 200 GTYYCVAENG 209 (386)
Q Consensus 200 g~y~C~~~~~ 209 (386)
+.|.|.+...
T Consensus 88 A~YyCa~~~~ 97 (111)
T d2gsia1 88 ATYYCSHIRE 97 (111)
T ss_dssp EEEEEEECSS
T ss_pred ceEEEEECCC
Confidence 9999987643
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.09 E-value=2e-05 Score=53.57 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=48.0
Q ss_pred CCCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeC------CC------CceEE------eeeEEEECCCCCCCC
Q psy8823 140 NSTRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAIL------PT------GGSIY------RGSILKIPQITKEDR 199 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~------~~------~~~~~------~~~~l~i~~~~~~d~ 199 (386)
..+..+.+.+|++++|.|.........+.||+.. +... .. ..... ....|.|.++..+|+
T Consensus 5 Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 84 (111)
T d1bd2d1 5 QNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDS 84 (111)
T ss_dssp CCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred ccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccccc
Confidence 3456677899999999998866555678999842 1110 00 00000 145899999999999
Q ss_pred eEEEEEEec
Q psy8823 200 GTYYCVAEN 208 (386)
Q Consensus 200 g~y~C~~~~ 208 (386)
|.|.|.+..
T Consensus 85 a~YyCa~~~ 93 (111)
T d1bd2d1 85 AVYFCAAME 93 (111)
T ss_dssp EEEEEEEES
T ss_pred EEEEeeccC
Confidence 999998874
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=5.4e-06 Score=56.53 Aligned_cols=77 Identities=14% Similarity=0.236 Sum_probs=42.7
Q ss_pred ccccCCCcEEEEEEEEecCCC---ee--EEEeCCeeeeee--cCceeEEee---eee--cCceeeeEEEEeecccCCCeE
Q psy8823 235 LGQALQYDMDLECHVEAYPPP---AI--VWIKEDTQQVLT--NNQHYSISH---FAT--ADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~---~~--~W~~~~~~~~~~--~~~~~~~~~---~~~--~~~~~~~~L~i~~~~~~d~G~ 302 (386)
+.+..|++++|.|.....+.. .+ .|.++....... .+....... +.. .....+.+|.|.+++.+|+|.
T Consensus 4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~ 83 (110)
T d1ncna_ 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL 83 (110)
T ss_dssp EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence 346689999999998543322 23 344443332111 110000000 000 001134679999999999999
Q ss_pred EEEEEEcCC
Q psy8823 303 YICRAANKL 311 (386)
Q Consensus 303 Y~C~a~n~~ 311 (386)
|.|.+....
T Consensus 84 Y~C~V~~~~ 92 (110)
T d1ncna_ 84 YQCIIHHKK 92 (110)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 999997544
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.09 E-value=2.7e-06 Score=57.46 Aligned_cols=67 Identities=25% Similarity=0.419 Sum_probs=46.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--ee---C--------CC-----CceEEeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--AI---L--------PT-----GGSIYRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~---~--------~~-----~~~~~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++|+|.|.........+.||+... .. . .. .........|.|.+++.+|+|.|.
T Consensus 8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (107)
T d3cx5k1 8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYF 87 (107)
T ss_dssp STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEE
T ss_pred CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEE
Confidence 445568899999999988665555699997431 10 0 00 001112458999999999999999
Q ss_pred EEEec
Q psy8823 204 CVAEN 208 (386)
Q Consensus 204 C~~~~ 208 (386)
|....
T Consensus 88 Ca~~~ 92 (107)
T d3cx5k1 88 CQHHI 92 (107)
T ss_dssp EEECS
T ss_pred eeeCC
Confidence 97653
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.08 E-value=1.7e-06 Score=59.07 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=46.4
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eeeC------CCC------ceE------EeeeEEEECCCCCCCCe
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAIL------PTG------GSI------YRGSILKIPQITKEDRG 200 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~------~~~------~~~------~~~~~l~i~~~~~~d~g 200 (386)
.+..+.+.+|++++|.|.........+.||+.. .... ... ... .....|.|.++..+|+|
T Consensus 5 ~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 84 (110)
T d1u3ha1 5 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA 84 (110)
T ss_dssp SCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCS
T ss_pred cCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCce
Confidence 355677899999999998865444569999842 1110 000 000 01347999999999999
Q ss_pred EEEEEEec
Q psy8823 201 TYYCVAEN 208 (386)
Q Consensus 201 ~y~C~~~~ 208 (386)
.|.|.+..
T Consensus 85 ~YyCa~~~ 92 (110)
T d1u3ha1 85 TYFCAASA 92 (110)
T ss_dssp EEEECCEE
T ss_pred eEeeeecC
Confidence 99998764
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=98.08 E-value=2.4e-05 Score=51.48 Aligned_cols=73 Identities=19% Similarity=0.328 Sum_probs=40.6
Q ss_pred cCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 238 ALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
..++..+|.|.+.|+.+. .++|.++|.. +..+.... ....+.+ ..........+..++...|+|.+.+..-..
T Consensus 14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~--~~~~~~~~-~~~~~~d-gty~~~s~l~v~~~~~~~ytC~V~H~sl~~ 88 (97)
T d1uvqb1 14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQE--ETAGVVST-PLIRNGD-WTFQILVMLEMTPQRGDVYTCHVEHPSLQS 88 (97)
T ss_dssp -----CEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEEC-CCEECSS-SCEEEEEEEECCSCTTCCEEEEEECTTCSS
T ss_pred cCCCCEEEEEEEeeeECCCeEEEEEECCEE--cCCCcEec-eeecCCC-ceEEEEEEeccCCCCCCEEEEEEEeCCCCC
Confidence 346778999999986544 7999999976 33322111 1111111 122233333445677788999999985443
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.07 E-value=5.1e-06 Score=55.45 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=44.2
Q ss_pred cCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 238 ALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
..++.++|.|.+.|+.+. .|+|..++......... ....++.+...+.|.|..-... .+.|+|.|.+..+...
T Consensus 18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~----~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~ 92 (102)
T d1mjuh2 18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFP----AVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTK 92 (102)
T ss_dssp ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC----CEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEE
T ss_pred cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecc----cccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEE
Confidence 356789999999986433 79997766432111111 1112223344567777777664 5689999999876544
Q ss_pred eE
Q psy8823 316 KT 317 (386)
Q Consensus 316 ~~ 317 (386)
..
T Consensus 93 v~ 94 (102)
T d1mjuh2 93 VD 94 (102)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.06 E-value=1.1e-05 Score=53.47 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=48.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.+.+.+... +..|+.++|.|.+.+. ....|+|.+++........ .......++.|.. ...|.+
T Consensus 3 ~~P~V~v~~~~~-~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~----~~~~~~~dgtf~~-------~s~l~v 70 (99)
T d1lk2b_ 3 KTPQIQVYSRHP-PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEM----SDMSFSKDWSFYI-------LAHTEF 70 (99)
T ss_dssp BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEE----EEEEECTTCCEEE-------EEEEEE
T ss_pred CCCEEEEEcCCC-ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEE----CceeECCCCCEEE-------EEEeEe
Confidence 467777754332 4578899999999865 3456999999876532110 0111111222222 124444
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
..++.+.|+|++.+..
T Consensus 71 ---~~~~~~~ytC~V~H~s 86 (99)
T d1lk2b_ 71 ---TPTETDTYACRVKHDS 86 (99)
T ss_dssp ---CCCSSCCEEEEEECTT
T ss_pred ---cCcCCCEEEEEEEeCC
Confidence 4556778999998653
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.05 E-value=1.5e-05 Score=54.37 Aligned_cols=82 Identities=15% Similarity=0.271 Sum_probs=50.0
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeC--Ce-eeeee--cCceeE---EeeeeecCceeeeEEEEeecccCCCeE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKE--DT-QQVLT--NNQHYS---ISHFATADEFTDTTIRVITIEKRQYGS 302 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~-~~~~~--~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~ 302 (386)
.+....+.+|++++|.|...+. ...+.|++- +. ...+. ...... ..............|.|.+++.+|+|.
T Consensus 7 ~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~ 85 (113)
T d1h5ba_ 7 SPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGT 85 (113)
T ss_dssp ECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEE
T ss_pred CCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEE
Confidence 3445566789999999997643 457899872 22 21111 111100 001111222345689999999999999
Q ss_pred EEEEEEcCCCc
Q psy8823 303 YICRAANKLGT 313 (386)
Q Consensus 303 Y~C~a~n~~g~ 313 (386)
|.|.+....+.
T Consensus 86 YyCa~~~~~~~ 96 (113)
T d1h5ba_ 86 YFCAAEASSGS 96 (113)
T ss_dssp EEEEEECSSSS
T ss_pred EEEEecCCCCC
Confidence 99998765543
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.04 E-value=1.1e-05 Score=54.96 Aligned_cols=67 Identities=22% Similarity=0.390 Sum_probs=46.2
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCee-----eCC---------CCceE----EeeeEEEECCCCCCCCeEE
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRRENNA-----ILP---------TGGSI----YRGSILKIPQITKEDRGTY 202 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~-----~~~---------~~~~~----~~~~~l~i~~~~~~d~g~y 202 (386)
..+.+.+|++++|.|.+.+.. ...+.||+.... +.. ..... .....|.|.+++.+|++.|
T Consensus 8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y 87 (114)
T d2rhea_ 8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY 87 (114)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence 367899999999999886543 456899974311 000 00111 1245899999999999999
Q ss_pred EEEEecC
Q psy8823 203 YCVAENG 209 (386)
Q Consensus 203 ~C~~~~~ 209 (386)
.|.....
T Consensus 88 yCA~~~~ 94 (114)
T d2rhea_ 88 YCAAWND 94 (114)
T ss_dssp EEEEEET
T ss_pred EEeecCC
Confidence 9998653
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.3e-05 Score=53.11 Aligned_cols=83 Identities=24% Similarity=0.227 Sum_probs=49.7
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
..+|.+.+.+.. .+..|+.++|.|.+.+. +...|+|.+++..+..... .......++.|... ..|.
T Consensus 3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~----~~~~~~~dgty~~~-------s~l~ 70 (100)
T d1k5nb_ 3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH----SDLSFSKDWSFYLL-------YYTE 70 (100)
T ss_dssp CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEE----CCCEECTTSCEEEE-------EEEE
T ss_pred cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccc----cceecCCCCcEEEE-------EEeE
Confidence 356777775433 25679999999999974 4457999999876532110 11111222233221 1344
Q ss_pred EcccCCCCCeEEEEEeEEcc
Q psy8823 100 VKDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~ 119 (386)
+ ..+|.+.|+|++.+..
T Consensus 71 v---~~~~~~~ytC~V~H~s 87 (100)
T d1k5nb_ 71 F---TPTEKDEYACRVNHVT 87 (100)
T ss_dssp E---CCCSSCCEEEEEECTT
T ss_pred E---CCCCCCEEEEEEEeCC
Confidence 4 4566779999998753
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.03 E-value=1.2e-05 Score=54.65 Aligned_cols=68 Identities=21% Similarity=0.413 Sum_probs=45.0
Q ss_pred CCCceEEEeCCccEEEEEEeeee-----CCCeEEEEEcCe--ee-----------CCCCceE-----EeeeEEEECCCCC
Q psy8823 140 NSTRSLVVSEGQPVQLECFAGGH-----PTPRISWRRENN--AI-----------LPTGGSI-----YRGSILKIPQITK 196 (386)
Q Consensus 140 ~~~~~~~~~~g~~v~l~C~~~~~-----~~~~v~W~~~~~--~~-----------~~~~~~~-----~~~~~l~i~~~~~ 196 (386)
..+..+.+.+|++|+|.|...+. ....+.|++... .. ....... .....|.|.+++.
T Consensus 6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~ 85 (112)
T d1mjul1 6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA 85 (112)
T ss_dssp CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence 34567788999999999987542 134689997431 10 0000011 1235799999999
Q ss_pred CCCeEEEEEEe
Q psy8823 197 EDRGTYYCVAE 207 (386)
Q Consensus 197 ~d~g~y~C~~~ 207 (386)
+|++.|.|...
T Consensus 86 ~DsAvYyCa~~ 96 (112)
T d1mjul1 86 EDVGVYYCLQH 96 (112)
T ss_dssp GGCEEEEEEEC
T ss_pred cCCceEEEEeC
Confidence 99999999644
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.03 E-value=1.7e-05 Score=51.98 Aligned_cols=71 Identities=10% Similarity=0.263 Sum_probs=43.7
Q ss_pred CCcEEEEEEEEecCCCeeEEEeCCe--e-e-ee--ecCceeEEeeee--ecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 240 QYDMDLECHVEAYPPPAIVWIKEDT--Q-Q-VL--TNNQHYSISHFA--TADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~~~~W~~~~~--~-~-~~--~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
|++|+|.|.........+.|++... . . .+ ..........+. .........|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~ 79 (94)
T d2gj6d1 1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD 79 (94)
T ss_dssp TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence 7899999998776667899987321 1 1 11 111111000011 011123568999999999999999988754
|
| >d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1e-05 Score=54.41 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=49.7
Q ss_pred ccCCCcEEEEEEEEecCC----CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 237 QALQYDMDLECHVEAYPP----PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...++.++|.|.+.|+.+ ..+.|.+++.. +............+..+...+.|.|..-..+..-.|+|.+.+...
T Consensus 15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~--~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l 92 (105)
T d1l6xa1 15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVE--VHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL 92 (105)
T ss_dssp HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEE--ECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeE--CCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence 456789999999998533 36789999887 433322222222233334566777777666666789999999765
Q ss_pred ce
Q psy8823 313 TS 314 (386)
Q Consensus 313 ~~ 314 (386)
..
T Consensus 93 ~~ 94 (105)
T d1l6xa1 93 PA 94 (105)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.00 E-value=1.4e-05 Score=54.15 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=44.1
Q ss_pred CceEEEeCCccEEEEEEeeeeC-----CCeEEEEEcC--eee-----------CCC-CceEE----eeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-----TPRISWRREN--NAI-----------LPT-GGSIY----RGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~-----------~~~-~~~~~----~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++|+|.|...+.. ...+.|++.. ... ... ..... ....|.|.++..+|
T Consensus 8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD 87 (112)
T d1ncwl1 8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED 87 (112)
T ss_dssp CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence 4667899999999999864321 2358899742 110 000 11111 23479999999999
Q ss_pred CeEEEEEEec
Q psy8823 199 RGTYYCVAEN 208 (386)
Q Consensus 199 ~g~y~C~~~~ 208 (386)
+|.|.|...+
T Consensus 88 sAvYYC~~~~ 97 (112)
T d1ncwl1 88 LGVYYCWQGT 97 (112)
T ss_dssp CEEEEEEECS
T ss_pred CEeEEEEcCC
Confidence 9999996543
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.00 E-value=5.2e-06 Score=56.00 Aligned_cols=68 Identities=19% Similarity=0.369 Sum_probs=46.4
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e---eCC---------CCceE----EeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A---ILP---------TGGSI----YRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~~---------~~~~~----~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.........+.||+... . +.. ..... .....|.|.+++.+|+|.|.
T Consensus 7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYy 86 (109)
T d1w72l1 7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYY 86 (109)
T ss_dssp CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEE
Confidence 346789999999999987544445699997421 1 100 00111 12457999999999999999
Q ss_pred EEEecC
Q psy8823 204 CVAENG 209 (386)
Q Consensus 204 C~~~~~ 209 (386)
|.+...
T Consensus 87 CA~~~~ 92 (109)
T d1w72l1 87 CQVWDS 92 (109)
T ss_dssp EEEEET
T ss_pred EEecCC
Confidence 998654
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.00 E-value=6.3e-06 Score=56.02 Aligned_cols=68 Identities=26% Similarity=0.392 Sum_probs=44.9
Q ss_pred CceEEEeCCccEEEEEEeeee----CCCeEEEEEcC--eee---C--------CCC-ceE----EeeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH----PTPRISWRREN--NAI---L--------PTG-GSI----YRGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~~--~~~---~--------~~~-~~~----~~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++|+|.|..... ....+.||+.. ... . ... ... .....|.|.+++.+|+
T Consensus 8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 87 (111)
T d1j05a_ 8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV 87 (111)
T ss_dssp CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence 456678899999999987421 22349999842 111 0 000 000 1245899999999999
Q ss_pred eEEEEEEecC
Q psy8823 200 GTYYCVAENG 209 (386)
Q Consensus 200 g~y~C~~~~~ 209 (386)
|.|.|.+.+.
T Consensus 88 a~YyCa~~~~ 97 (111)
T d1j05a_ 88 ATYYCQQTNE 97 (111)
T ss_dssp EEEEEEECSS
T ss_pred ccEEEeecCC
Confidence 9999987643
|
| >d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.99 E-value=1.8e-05 Score=54.45 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=50.2
Q ss_pred cCCCcEEEEEEEEec-CC---CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 238 ALQYDMDLECHVEAY-PP---PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~-p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..++.++|.|.+.|+ |. ..++|++++.. .............+..+...+.|.|..-++.....|+|.|.+..-.
T Consensus 30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~--~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l~ 107 (119)
T d1igtb3 30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVE--VHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP 107 (119)
T ss_dssp CTTSCCEEEEEEEEECTTCCCCEEEEEETTEE--CSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCS
T ss_pred ccCCceEEEEEeecccCCCCcEEEEEeeCCcc--cCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCCC
Confidence 457889999999985 42 37889999987 3332222222233334445677887777777778899999987643
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.99 E-value=8.9e-06 Score=55.41 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=46.9
Q ss_pred CceEEEeCCccEEEEEEeeeeC---CCeEEEEEcCe--ee---C--------CC-Cc----eEEeeeEEEECCCCCCCCe
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP---TPRISWRRENN--AI---L--------PT-GG----SIYRGSILKIPQITKEDRG 200 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~---~~~v~W~~~~~--~~---~--------~~-~~----~~~~~~~l~i~~~~~~d~g 200 (386)
+..+.+.+|++++|.|...+.. ...+.||+... .. . .. .. .......|.|.+++.+|+|
T Consensus 7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 86 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA 86 (112)
T ss_dssp CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence 4578899999999999876532 23589998431 10 0 00 00 0112457999999999999
Q ss_pred EEEEEEecCC
Q psy8823 201 TYYCVAENGV 210 (386)
Q Consensus 201 ~y~C~~~~~~ 210 (386)
.|.|...+..
T Consensus 87 ~YyCa~~~~~ 96 (112)
T d1lgva1 87 DYYCSSYDGS 96 (112)
T ss_dssp EEEEEEECSS
T ss_pred EEEEeeecCC
Confidence 9999886543
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.99 E-value=1.3e-05 Score=55.05 Aligned_cols=84 Identities=11% Similarity=0.247 Sum_probs=49.9
Q ss_pred eeCCCcccccCCCcEEEEEEEEe-cCCCeeEEEeCC---eeeeee---cCce--eEEe--eeeecCceeeeEEEEeeccc
Q psy8823 229 TVPKPRLGQALQYDMDLECHVEA-YPPPAIVWIKED---TQQVLT---NNQH--YSIS--HFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 229 ~~~~~~~~~~~g~~~~l~C~~~g-~p~~~~~W~~~~---~~~~~~---~~~~--~~~~--~~~~~~~~~~~~L~i~~~~~ 297 (386)
...+..+.+.+|++|+|.|.... .....+.|++.. ....+. .... .... ............|.|.+++.
T Consensus 3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1fo0a_ 3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI 82 (115)
T ss_dssp ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence 33455667889999999998754 334468899732 211111 0000 0000 00011112356799999999
Q ss_pred CCCeEEEEEEEcCCC
Q psy8823 298 RQYGSYICRAANKLG 312 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~g 312 (386)
+|+|.|.|.+....+
T Consensus 83 ~Dsa~YyCa~~~~~~ 97 (115)
T d1fo0a_ 83 EDSAVYFCAMRGDYG 97 (115)
T ss_dssp GGCEEEEEEEECCCT
T ss_pred cccccccceeecCCC
Confidence 999999999875543
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.98 E-value=1.3e-05 Score=54.17 Aligned_cols=76 Identities=11% Similarity=0.168 Sum_probs=46.0
Q ss_pred cccccCCCcEEEEEEEEecCCC---eeEEEe---CCeeeeeecCceeEE----eeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 234 RLGQALQYDMDLECHVEAYPPP---AIVWIK---EDTQQVLTNNQHYSI----SHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 234 ~~~~~~g~~~~l~C~~~g~p~~---~~~W~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
...+.+|++++|.|...+.... .+.|++ +..+..+........ ..+..........|.|.+++.+|+|.|
T Consensus 9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y 88 (110)
T d1oaql_ 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY 88 (110)
T ss_dssp EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence 4557789999999998654322 388986 223322211111000 000101112457899999999999999
Q ss_pred EEEEEc
Q psy8823 304 ICRAAN 309 (386)
Q Consensus 304 ~C~a~n 309 (386)
.|.+..
T Consensus 89 yCa~~~ 94 (110)
T d1oaql_ 89 FCALWY 94 (110)
T ss_dssp EEEEEE
T ss_pred EEEccc
Confidence 999764
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=5.8e-06 Score=57.46 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=45.5
Q ss_pred CceEEEeCCccEEEEEEeeee-------CCCeEEEEEcCeeeCC-----------------CCceE------EeeeEEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH-------PTPRISWRRENNAILP-----------------TGGSI------YRGSILKI 191 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~~-----------------~~~~~------~~~~~l~i 191 (386)
+..+++.+|+.|+|.|..... ....+.|++....-.. .++.. ....+|.|
T Consensus 8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (121)
T d2g5ra1 8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI 87 (121)
T ss_dssp CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence 456789999999999987421 1135789885422100 00111 12457999
Q ss_pred CCCCCCCCeEEEEEEecCC
Q psy8823 192 PQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 192 ~~~~~~d~g~y~C~~~~~~ 210 (386)
.+++.+|+|.|.|.+..+.
T Consensus 88 ~~v~~~DsG~Y~C~v~~~~ 106 (121)
T d2g5ra1 88 RDARMSDAGRYFFRMEKGN 106 (121)
T ss_dssp CSCCGGGCEEEEEEEEETT
T ss_pred CCCChHHCEEEEEEEEeCC
Confidence 9999999999999997643
|
| >d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=1.3e-05 Score=53.58 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=48.5
Q ss_pred ccccCCCcEEEEEEEEecCCC----eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcC
Q psy8823 235 LGQALQYDMDLECHVEAYPPP----AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANK 310 (386)
Q Consensus 235 ~~~~~g~~~~l~C~~~g~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 310 (386)
.....+..++|.|.+.|..+. .+.|.+++.. .............+..+...+.|.|..-..+.+..|+|.+.+.
T Consensus 11 ~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~--~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~ 88 (103)
T d1fp5a1 11 FDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGK--PVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHP 88 (103)
T ss_dssp HHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCC--CCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECS
T ss_pred HHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCce--ecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEEC
Confidence 335567889999999985433 5678888776 3332222222222333345667777766666677899999997
Q ss_pred CC
Q psy8823 311 LG 312 (386)
Q Consensus 311 ~g 312 (386)
..
T Consensus 89 ~l 90 (103)
T d1fp5a1 89 HL 90 (103)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=9.6e-06 Score=54.42 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+.......++.++|.|.+.+. ....|+|.+++..+...... ........++.|... ..|.|.
T Consensus 4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~--~~~~~~~~~gtys~~-------S~L~v~ 74 (105)
T d1fp5a2 4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHS--TTQPRKTKGSGFFVF-------SRLEVT 74 (105)
T ss_dssp CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEE--ECCCEECSSSCEEEE-------EEEEEC
T ss_pred CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeE--eeeeEecCCCCEEEE-------EEEEEC
Confidence 4666665544444567889999999863 34679999988765332111 111111122333332 267777
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
.-...+...|+|++.+..
T Consensus 75 ~~~W~~g~~ytC~V~H~~ 92 (105)
T d1fp5a2 75 RAEWEQKDEFICRAVHEA 92 (105)
T ss_dssp HHHHTTGGGEEEEEECTT
T ss_pred HHHcCCCCEEEEEEEECC
Confidence 666666678999998743
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=97.94 E-value=1e-05 Score=54.95 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=46.1
Q ss_pred CceEEEeCCccEEEEEEeeeeC--CCeEEEEEcCee-----eCC---------CCce----EEeeeEEEECCCCCCCCeE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--TPRISWRRENNA-----ILP---------TGGS----IYRGSILKIPQITKEDRGT 201 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~~~-----~~~---------~~~~----~~~~~~l~i~~~~~~d~g~ 201 (386)
+..+.+.+|++++|.|...+.. ...+.||+.... +.. .... ......|.|.+++.+|+|.
T Consensus 7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~ 86 (111)
T d1rzfl1 7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (111)
T ss_dssp CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence 3468899999999999875432 345999974211 000 0000 1124589999999999999
Q ss_pred EEEEEecC
Q psy8823 202 YYCVAENG 209 (386)
Q Consensus 202 y~C~~~~~ 209 (386)
|.|.+...
T Consensus 87 YyCA~~~~ 94 (111)
T d1rzfl1 87 YYCGTWDS 94 (111)
T ss_dssp EEEEEEET
T ss_pred eEEeecCC
Confidence 99988654
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=4.2e-05 Score=49.80 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.||.+.+.. ...++.++|.|.+.+. +...|+|.++|..+.... ..........+..|... ..|.+
T Consensus 3 vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~--~~~~~~~~~~~~t~~~~-------s~l~v 69 (94)
T d1de4a1 3 VPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKE--FEPKDVLPNGDGTYQGW-------ITLAV 69 (94)
T ss_dssp BCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGG--SCCCEEEECTTSCEEEE-------EEEEE
T ss_pred CCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCc--ccccceEeCCCceEEEE-------EEEEE
Confidence 356666532 2357789999999973 456799999987753221 11111111112222221 13444
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
...|...|+|++.+..
T Consensus 70 ---~~~~~~~ytC~V~H~s 85 (94)
T d1de4a1 70 ---PPGEEQRYTCQVEHPG 85 (94)
T ss_dssp ---CTTCGGGEEEEEECTT
T ss_pred ---CCCCCCEEEEEEEeCC
Confidence 4456678999998753
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=4e-06 Score=55.20 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=49.1
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+. ..+..|++|+|.|... .+...+.+++++........... .......+.|.+++.+|+|.|+
T Consensus 4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~--------~~~~~a~F~i~~v~~~~~G~Y~ 73 (96)
T d1ugna1 4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQ--------ELVKKGQFPIPSITWEHTGRYR 73 (96)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCH--------HHHTTTEEEESSCCGGGCEEEE
T ss_pred CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccC--------CCCCEEEEEEEecCHHHCCeEE
Confidence 455554433 4577899999999963 33447888888764111110000 0013467999999999999999
Q ss_pred EEEEcC
Q psy8823 305 CRAANK 310 (386)
Q Consensus 305 C~a~n~ 310 (386)
|.....
T Consensus 74 C~y~~~ 79 (96)
T d1ugna1 74 CYYGSD 79 (96)
T ss_dssp EEEEET
T ss_pred EEEeCC
Confidence 987643
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=3.6e-05 Score=50.34 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=46.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.||.+.+.... ..|+.++|.|.+.+. | ...|+|.+++........ .......++.|. ....
T Consensus 2 ~PP~V~v~~~~---~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~----~~~~~~~~~t~~----------~~s~ 64 (94)
T d1t7va1 2 DPPSVVVTSHQ---APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELR----GDVLHNGNGTYQ----------SWVV 64 (94)
T ss_dssp BCCEEEEEEEE---CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEE----EEEEETTTTEEE----------EEEE
T ss_pred cCCEeEEeccC---CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEE----eeeecCCCCeEE----------EEEE
Confidence 46777764332 358899999999974 3 456999998865422100 000000111222 2223
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
..+...|...|+|++.+..
T Consensus 65 l~~~~~~~~~ytC~V~H~s 83 (94)
T d1t7va1 65 VAVPPQDTAPYSCHVQHSS 83 (94)
T ss_dssp EEECTTCCSCEEEEEEETT
T ss_pred eEeCCCCCCEEEEEEEECC
Confidence 3344566678999998754
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=4.2e-05 Score=50.31 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=46.9
Q ss_pred cceEeeCCCcccccCCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEE
Q psy8823 225 APVITVPKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYI 304 (386)
Q Consensus 225 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 304 (386)
+|.+...+ ...+..|++|+|.|... .....+.++|++.......... ...........+.|.+++.+|+|+|+
T Consensus 4 kPsLsa~P-~~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~-----~~~~~~~~~a~F~l~~v~~~~~G~Y~ 76 (98)
T d1ugna2 4 KPTLSAQP-SPVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNS-----QPHARGSSRAIFSVGPVSPSRRWWYR 76 (98)
T ss_dssp CCEEEEES-CSEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC-----------CCEEEEEECCCCTTSCEEEE
T ss_pred CCEEEeeC-CCccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeee-----EEcCCCceEEEEEeeecccCCCeEEE
Confidence 45555544 34578899999999863 2234788888876521110000 00001113567999999999999999
Q ss_pred EEEEcCC
Q psy8823 305 CRAANKL 311 (386)
Q Consensus 305 C~a~n~~ 311 (386)
|......
T Consensus 77 C~y~~~~ 83 (98)
T d1ugna2 77 CYAYDSN 83 (98)
T ss_dssp EEEECTT
T ss_pred EeeEcCC
Confidence 9876443
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.91 E-value=2.1e-05 Score=53.28 Aligned_cols=66 Identities=20% Similarity=0.402 Sum_probs=45.2
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee---C---CC---------CceE-----EeeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI---L---PT---------GGSI-----YRGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~---~---~~---------~~~~-----~~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|...+. ...+.||+.. ... . .. .... .....|.|.++..+|+
T Consensus 8 P~~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 86 (110)
T d2aq2a1 8 PRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQT 86 (110)
T ss_dssp CSEEEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGC
T ss_pred CCeEEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhC
Confidence 456678899999999987542 4579999832 111 0 00 0000 1245799999999999
Q ss_pred eEEEEEEec
Q psy8823 200 GTYYCVAEN 208 (386)
Q Consensus 200 g~y~C~~~~ 208 (386)
|.|.|.+..
T Consensus 87 a~YyCa~~~ 95 (110)
T d2aq2a1 87 SVYFCASGG 95 (110)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEeeCC
Confidence 999998764
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.90 E-value=5.3e-06 Score=56.97 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=45.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCe--e---eCC--------CC-ce----EEeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENN--A---ILP--------TG-GS----IYRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~~--------~~-~~----~~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|...+.....+.||+... . +.. .. .. ......|.|.+++.+|+|.|.
T Consensus 8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy 87 (119)
T d1f3rb2 8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF 87 (119)
T ss_dssp TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence 456668899999999988655445699998421 1 100 00 00 111347999999999999999
Q ss_pred EEEec
Q psy8823 204 CVAEN 208 (386)
Q Consensus 204 C~~~~ 208 (386)
|....
T Consensus 88 Ca~~~ 92 (119)
T d1f3rb2 88 CYQYN 92 (119)
T ss_dssp EEEES
T ss_pred eeccC
Confidence 97653
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=4.4e-06 Score=57.20 Aligned_cols=68 Identities=18% Similarity=0.298 Sum_probs=44.8
Q ss_pred eEEEeCCccEEEEEEeee--eCCCeEEEEEcCee-----eC---C----CC-----ceEE------eeeEEEECCCCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGG--HPTPRISWRRENNA-----IL---P----TG-----GSIY------RGSILKIPQITKED 198 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~~~-----~~---~----~~-----~~~~------~~~~l~i~~~~~~d 198 (386)
...+.+|++++|.|...+ .....+.|++.... +. . .. +... ....|+|.+++.+|
T Consensus 8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D 87 (113)
T d1smoa_ 8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED 87 (113)
T ss_dssp EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence 456778999999998753 23456889984211 10 0 00 0001 12469999999999
Q ss_pred CeEEEEEEecCCC
Q psy8823 199 RGTYYCVAENGVG 211 (386)
Q Consensus 199 ~g~y~C~~~~~~~ 211 (386)
+|.|.|.+.....
T Consensus 88 sg~Y~Cav~~~~~ 100 (113)
T d1smoa_ 88 SGLYQCVIYQPPK 100 (113)
T ss_dssp CEEEEEEECCTTS
T ss_pred CceEEEEEECCCC
Confidence 9999999866443
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.89 E-value=1.9e-05 Score=53.73 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=44.8
Q ss_pred CceEEEeCCccEEEEEEeeee-----CCCeEEEEEcCee-----e--------CCCC-ceE----EeeeEEEECCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH-----PTPRISWRRENNA-----I--------LPTG-GSI----YRGSILKIPQITKED 198 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~-----~--------~~~~-~~~----~~~~~l~i~~~~~~d 198 (386)
+..+.+.+|++|+|.|...+. ....+.||+.... + .... ... .....|.|.++..+|
T Consensus 9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D 88 (113)
T d1n4xl_ 9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED 88 (113)
T ss_dssp CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGG
T ss_pred CCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCccc
Confidence 456778999999999987532 1246899974311 0 0000 000 123589999999999
Q ss_pred CeEEEEEEec
Q psy8823 199 RGTYYCVAEN 208 (386)
Q Consensus 199 ~g~y~C~~~~ 208 (386)
+|.|.|...+
T Consensus 89 savYyCa~~~ 98 (113)
T d1n4xl_ 89 LGIYYCFQGS 98 (113)
T ss_dssp CEEEEEEECS
T ss_pred CEEEEEEECC
Confidence 9999996554
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.89 E-value=1.4e-05 Score=55.70 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=53.3
Q ss_pred ecceEeeCCC-cccccCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEe------eeeecCceeeeEEEEee
Q psy8823 224 FAPVITVPKP-RLGQALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSIS------HFATADEFTDTTIRVIT 294 (386)
Q Consensus 224 ~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~L~i~~ 294 (386)
++|.+.+..+ ......+..++|.|.+.|+.+. .|+|+++|.. +......... ...+..+...+.|.|..
T Consensus 3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~--~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~ 80 (127)
T d1ogae2 3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE--VHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSA 80 (127)
T ss_dssp BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE--ECSSEEECSSCEESCTTSTTCCEEEEEEEEEEH
T ss_pred cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEE--ccCcEEecceeeeecccCCCCeEEEEEEEEECH
Confidence 3565554333 2334456789999999986433 7999999987 3322211100 01122233467788877
Q ss_pred cccCCCe-EEEEEEEcCCC
Q psy8823 295 IEKRQYG-SYICRAANKLG 312 (386)
Q Consensus 295 ~~~~d~G-~Y~C~a~n~~g 312 (386)
....+.| .|+|.+.+...
T Consensus 81 ~~W~~~g~~ytC~V~H~~l 99 (127)
T d1ogae2 81 TFWQNPRNHFRCQVQFYGL 99 (127)
T ss_dssp HHHTCTTCEEEEEEEECCB
T ss_pred HHhCCCCCEEEEEEEECCC
Confidence 7777755 69999998754
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=6.8e-05 Score=48.32 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=42.4
Q ss_pred CCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCcee-EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCC
Q psy8823 239 LQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHY-SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKL 311 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 311 (386)
.++.++|.|.+.|+.+. .++|.++|.. +...... ......+..+...+.|.+.. .+...|+|.+.+..
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~--~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~~ 84 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEE--LIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQG 84 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEE--ECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECSS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEE--eCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEECC
Confidence 35689999999996544 7899999987 4333222 12222233333445555543 33446999998875
|
| >d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.89 E-value=1.6e-05 Score=53.09 Aligned_cols=73 Identities=8% Similarity=0.135 Sum_probs=47.2
Q ss_pred cCCCcEEEEEEEEec-CC---CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 238 ALQYDMDLECHVEAY-PP---PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~-p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
..+..++|.|.+.++ |. ..++|.+++.. .............++.+...+.|.|..-.+..+-.|+|.|.+..-
T Consensus 14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~--~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l 90 (103)
T d1i1ca1 14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVE--VHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF 90 (103)
T ss_dssp TSSSCCEEEEEEEEECTTCCCCEEEEEESSCE--ECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred ccCCCcEEEEEEEeeECCCCCEEEEEEECCcc--ccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCC
Confidence 356779999999885 43 37889999987 333322222222223334566777766666666679999998753
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.88 E-value=9e-06 Score=54.54 Aligned_cols=67 Identities=22% Similarity=0.342 Sum_probs=44.7
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCeee------------C-C-CCceE----EeeeEEEECCCCCCCCeEE
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNAI------------L-P-TGGSI----YRGSILKIPQITKEDRGTY 202 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~------------~-~-~~~~~----~~~~~l~i~~~~~~d~g~y 202 (386)
.+..+.+.+|++++|.|..... ...+.||+....- . . ..... .....|.|.++..+|+|.|
T Consensus 6 sP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y 84 (104)
T d1yqvl1 6 SPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATY 84 (104)
T ss_dssp ESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred cCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeE
Confidence 3566778999999999987433 3458899843110 0 0 00001 1235799999999999999
Q ss_pred EEEEec
Q psy8823 203 YCVAEN 208 (386)
Q Consensus 203 ~C~~~~ 208 (386)
.|....
T Consensus 85 yCa~~~ 90 (104)
T d1yqvl1 85 YCQQWG 90 (104)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 997643
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.88 E-value=1.9e-05 Score=54.41 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=44.8
Q ss_pred CceEEEeCCccEEEEEEeeee---C---CCeEEEEEcCeeeC--------------C-CCceE------EeeeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGH---P---TPRISWRRENNAIL--------------P-TGGSI------YRGSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~---~---~~~v~W~~~~~~~~--------------~-~~~~~------~~~~~l~i~~~ 194 (386)
|..+.+.+|+.|+|.|.+... + ...+.|++...... . ..+.. ....+|.|.++
T Consensus 7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 86 (118)
T d1qfoa_ 7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL 86 (118)
T ss_dssp CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence 456788999999999987421 1 22466777432110 0 00111 12447999999
Q ss_pred CCCCCeEEEEEEecCC
Q psy8823 195 TKEDRGTYYCVAENGV 210 (386)
Q Consensus 195 ~~~d~g~y~C~~~~~~ 210 (386)
+.+|+|.|.|.+....
T Consensus 87 ~~~DsG~Y~C~v~~~~ 102 (118)
T d1qfoa_ 87 KPEDSGTYNFRFEISD 102 (118)
T ss_dssp CGGGCEEEEEEEECC-
T ss_pred ChhHCEEEEEEEEeCC
Confidence 9999999999997653
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=97.86 E-value=5.8e-05 Score=49.25 Aligned_cols=69 Identities=10% Similarity=0.261 Sum_probs=40.3
Q ss_pred CCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCcee--EEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 240 QYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHY--SISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
+..++|.|.+.|+.+. .++|.++|.. +...... ......+..+...+.|.+. .++...|+|.+.+....
T Consensus 15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~--~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~ytC~V~H~~~~ 87 (94)
T d1hyrc1 15 EGNITVTCRASGFYPWNITLSWRQDGVS--LSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQRFTCYMEHSGNH 87 (94)
T ss_dssp SSEEEEEEEEEEEBSSCCEEEEEETTEE--CCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEEETTEE
T ss_pred CCCEEEEEEEEEEECCCcEEEEeECCeE--cCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEECCCC
Confidence 4578999999996433 7999999987 3322211 1111111122233344443 34445699999987543
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.86 E-value=9.1e-06 Score=55.28 Aligned_cols=67 Identities=21% Similarity=0.388 Sum_probs=45.5
Q ss_pred CceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eee-----------CCC-CceEE------eeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAI-----------LPT-GGSIY------RGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~-----------~~~-~~~~~------~~~~l~i~~~~~~d~ 199 (386)
+..+.+.+|++++|.|...+.. ...+.|++.. +.. ... .+... ....|.|.+++.+|+
T Consensus 7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds 86 (111)
T d1cd0a_ 7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE 86 (111)
T ss_dssp CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence 4567899999999999885532 2358999842 110 000 11111 145799999999999
Q ss_pred eEEEEEEec
Q psy8823 200 GTYYCVAEN 208 (386)
Q Consensus 200 g~y~C~~~~ 208 (386)
|.|.|....
T Consensus 87 a~YyCA~~~ 95 (111)
T d1cd0a_ 87 ADYYCQSYD 95 (111)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEeecc
Confidence 999998754
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.86 E-value=1.8e-05 Score=53.85 Aligned_cols=79 Identities=13% Similarity=0.246 Sum_probs=47.7
Q ss_pred CCcccccCCCcEEEEEEEEecC-CCeeEEEeC--Cee-eeee-c-C--ceeEEeeeeecCceeeeEEEEeecccCCCeEE
Q psy8823 232 KPRLGQALQYDMDLECHVEAYP-PPAIVWIKE--DTQ-QVLT-N-N--QHYSISHFATADEFTDTTIRVITIEKRQYGSY 303 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p-~~~~~W~~~--~~~-~~~~-~-~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 303 (386)
+....+.+|++|+|.|...+.. ...+.|++- +.. ..+. . . .......+..........|.|.++..+|+|.|
T Consensus 5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y 84 (112)
T d1kgcd1 5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY 84 (112)
T ss_dssp CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence 3345677899999999986544 345899973 221 1111 0 0 00000111112223456899999999999999
Q ss_pred EEEEEcC
Q psy8823 304 ICRAANK 310 (386)
Q Consensus 304 ~C~a~n~ 310 (386)
.|.+...
T Consensus 85 yCa~~~~ 91 (112)
T d1kgcd1 85 YCILPLA 91 (112)
T ss_dssp EEECCCC
T ss_pred eeeEecC
Confidence 9987543
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.85 E-value=3.8e-05 Score=51.97 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=49.6
Q ss_pred eCCCcccccCCCcEEEEEEEEecCCCeeEEEeCC---eeeeee--cCc--eeEEeeee--ecCceeeeEEEEeecccCCC
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYPPPAIVWIKED---TQQVLT--NNQ--HYSISHFA--TADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~---~~~~~~--~~~--~~~~~~~~--~~~~~~~~~L~i~~~~~~d~ 300 (386)
..+....+.+|++++|.|.........+.|++-. .+..+. ... ......+. .........|.|.++..+|+
T Consensus 5 Q~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Ds 84 (110)
T d1ac6a_ 5 QTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS 84 (110)
T ss_dssp ECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGC
T ss_pred eCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCC
Confidence 3455566789999999999766555579998732 221111 000 00001111 11122356899999999999
Q ss_pred eEEEEEEEcC
Q psy8823 301 GSYICRAANK 310 (386)
Q Consensus 301 G~Y~C~a~n~ 310 (386)
|.|.|.+...
T Consensus 85 a~YyCA~~~~ 94 (110)
T d1ac6a_ 85 AVYYCALSGG 94 (110)
T ss_dssp EEEEEEEEET
T ss_pred cccceeecCC
Confidence 9999988653
|
| >d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunomodulatory protein m144, alpha-3 domain species: Murine cytomegalovirus [TaxId: 10366]
Probab=97.85 E-value=1.7e-05 Score=52.19 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=39.9
Q ss_pred CcEEEEEEEEecCCC--eeEEEeCCeeeeeecCce---eEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 241 YDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQH---YSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 241 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
..++|.|.+.|+.+. .++|.+|+.......... .......++.+...+.|.+ .+.+...|+|.+.+....
T Consensus 15 ~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~s~~ 89 (98)
T d1u58a1 15 GGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYV---DGGLEHVYSCRVKGIATG 89 (98)
T ss_dssp SCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEE---CTTCGGGEEEEEEEGGGT
T ss_pred CcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEE---CCCCCCEEEEEEEeCCCC
Confidence 478999999997555 799999987522111111 1111112222223444544 445556799999876543
|
| >d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=2e-05 Score=52.64 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=46.0
Q ss_pred cCCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCcee
Q psy8823 238 ALQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTSE 315 (386)
Q Consensus 238 ~~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 315 (386)
..+..++|.|.+.++.+. .|+|.+++...... ........++.+...+.|.|..-... ...|+|.+.+..+...
T Consensus 18 ~~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~---t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~ 93 (103)
T d1c5ch2 18 TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH---TFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNTK 93 (103)
T ss_dssp EETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE---ECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTEE
T ss_pred cCCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEE---ECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCEE
Confidence 346789999999886433 79997776542111 11111122333345567777666553 4579999999876654
Q ss_pred e
Q psy8823 316 K 316 (386)
Q Consensus 316 ~ 316 (386)
.
T Consensus 94 v 94 (103)
T d1c5ch2 94 V 94 (103)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.82 E-value=9.3e-05 Score=48.49 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=49.6
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.||.+.+.+... +..++.++|.|.+.+. +...|+|.+++..+..... ........++.|... ..|.+
T Consensus 2 ~PP~V~v~~~~~-~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~---~~~~~~~~dgty~~~-------s~L~v 70 (98)
T d1hdmb1 2 RPPSVQVAKTTP-FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSA---HKTAQPNGDWTYQTL-------SHLAL 70 (98)
T ss_dssp BCCEEEEEECCC-CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCS---BCCCEECSSSCEEEE-------EEEEE
T ss_pred CCCEEEEEcCCC-ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeE---eCceEECCCCCEEEE-------EEeEc
Confidence 367777764332 5678899999999964 4567999998876532111 111111223333332 14554
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
..++...|+|++.+..
T Consensus 71 ---~~~~~~~ytC~V~H~s 86 (98)
T d1hdmb1 71 ---TPSYGDTYTCVVEHIG 86 (98)
T ss_dssp ---CCCTTCCEEEEEECTT
T ss_pred ---CCCCCCEEEEEEEeCC
Confidence 3455668999998753
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00012 Score=47.78 Aligned_cols=61 Identities=16% Similarity=0.380 Sum_probs=42.9
Q ss_pred CCccEEEEEEeee-eCCCeEEEEEcCeeeCCCCce---------EEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 149 EGQPVQLECFAGG-HPTPRISWRRENNAILPTGGS---------IYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 149 ~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
.++.++|.|.+.| +|.+.++|++++..+...... ....+.|.+.. .+...|+|.+.+....
T Consensus 15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~ 85 (95)
T d1dr9a2 15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLR 85 (95)
T ss_dssp STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCC
T ss_pred CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCC
Confidence 4677899999976 588899999999877543221 22234566643 4567999999987554
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.81 E-value=1.1e-05 Score=54.41 Aligned_cols=68 Identities=24% Similarity=0.421 Sum_probs=46.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcC--eee---C--------CCC-ceE----EeeeEEEECCCCCCCCeEEE
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRREN--NAI---L--------PTG-GSI----YRGSILKIPQITKEDRGTYY 203 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~---~--------~~~-~~~----~~~~~l~i~~~~~~d~g~y~ 203 (386)
+..+.+.+|++++|.|.........+.||+.. ..+ . ... +.. .....|.|.+++.+|+|.|.
T Consensus 6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy 85 (108)
T d1nfde1 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (108)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence 45678899999999998754444468899732 111 0 000 001 12457999999999999999
Q ss_pred EEEecC
Q psy8823 204 CVAENG 209 (386)
Q Consensus 204 C~~~~~ 209 (386)
|.+...
T Consensus 86 CA~~~~ 91 (108)
T d1nfde1 86 CLSSYG 91 (108)
T ss_dssp EEEEET
T ss_pred EEeecC
Confidence 988643
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=6e-05 Score=49.30 Aligned_cols=68 Identities=12% Similarity=0.236 Sum_probs=39.9
Q ss_pred CCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeE-EeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 240 QYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYS-ISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 240 g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
+..++|.|.+.|+.+. .++|.++|.. ........ ............+.|.+ ...+...|+|.+.+..-
T Consensus 15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~--~~~~~~~~~~~~~~~~~~~~~s~l~v---~~~~~~~ytC~V~H~~L 85 (95)
T d1k5na1 15 DHEATLRCWALGFYPAEITLTWQRDGED--QTQDTELVETRPAGDRTFQKWAAVVV---PSGEEQRYTCHVQHEGL 85 (95)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEE--CGGGCEECCCEECSSSCEEEEEEEEE---ETTCGGGEEEEEECTTC
T ss_pred CCCEEEEEEEEeEeCCCCEEEEEECCEE--cCCCceeccEEcCCCCeEEEEEEEEE---EcCCCCEEEEEEEECcC
Confidence 4578999999997555 7899999987 33322111 11111111222333433 34444579999998753
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.80 E-value=4.9e-05 Score=51.80 Aligned_cols=81 Identities=14% Similarity=0.320 Sum_probs=49.1
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCe--e-e-ee--ecCceeEEe---eeeecCceeeeEEEEeecccCCCe
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDT--Q-Q-VL--TNNQHYSIS---HFATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~--~-~-~~--~~~~~~~~~---~~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
.+....+.+|++++|.|...+. ...+.|++-.. . . .+ ......... ............|.|.+++.+|+|
T Consensus 6 ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 84 (115)
T d1ogad1 6 SPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTG 84 (115)
T ss_dssp ECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred CCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcccee
Confidence 3445667889999999997553 34789987321 1 0 00 111111100 011122235678999999999999
Q ss_pred EEEEEEEcCCC
Q psy8823 302 SYICRAANKLG 312 (386)
Q Consensus 302 ~Y~C~a~n~~g 312 (386)
.|.|.+....+
T Consensus 85 ~YyCa~~~~~~ 95 (115)
T d1ogad1 85 LYLCAGAGSQG 95 (115)
T ss_dssp EEEEEEECTTS
T ss_pred eEcccccCCCC
Confidence 99998875443
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=3.1e-05 Score=51.58 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=51.5
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.+.+.++...-..++.++|.|.+.+. ....|+|.++|..+..... ........++.|... ..|.|
T Consensus 4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~---t~~~~~~~dgtys~~-------S~L~v 73 (102)
T d1q0xl2 4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGME---TTQPSKQSNNKYMAS-------SYLTL 73 (102)
T ss_dssp BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE---ECCCEECTTSCEEEE-------EEEEE
T ss_pred CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeE---ecccEEcCCCCEEEE-------EEEEE
Confidence 35667665443332346779999999865 3457999998865422110 111111123334332 26777
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
..-.......|+|++.+..
T Consensus 74 ~~~~w~~~~~ytC~V~H~~ 92 (102)
T d1q0xl2 74 TARAWERHSSYSCQVTHEG 92 (102)
T ss_dssp EHHHHTTCCEEEEEEEETT
T ss_pred CHHHhCCCCEEEEEEEECC
Confidence 7666666779999998753
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=97.79 E-value=6.3e-05 Score=49.69 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=49.0
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
-+|.+.+.+... +..|+.++|.|.+.+. ....|+|.++|..+.... .........++.|... ..|.+
T Consensus 4 v~P~V~v~~~~~-~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~---~~~~~~~~~dgty~~~-------S~L~v 72 (101)
T d1fnga1 4 VAPEVTVLSRSP-VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGV---SETVFLPRDDHLFRKF-------HYLTF 72 (101)
T ss_dssp BCCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSE---EECCCEECSSSCEEEE-------EEEEE
T ss_pred cCCeEEEeCCCc-ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCc---EeCeEEECCCCcEEEE-------EEeEE
Confidence 467777764433 4568889999999864 345799999887553211 0111111222333322 25555
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
.. .+...|+|++.+..
T Consensus 73 ~~---~~~~~ytC~V~H~s 88 (101)
T d1fnga1 73 LP---STDDFYDCEVDHWG 88 (101)
T ss_dssp CC---CTTCCEEEEEECTT
T ss_pred cC---CCCCEEEEEEEECC
Confidence 43 45568999998653
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.79 E-value=7.9e-05 Score=45.47 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=54.5
Q ss_pred ceEEEeCCccEEEEEEeee-eCCCeEEEEEcCeee----CCCCceE--------EeeeEEEECCCCCCCCeEEEEEEecC
Q psy8823 143 RSLVVSEGQPVQLECFAGG-HPTPRISWRRENNAI----LPTGGSI--------YRGSILKIPQITKEDRGTYYCVAENG 209 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~----~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~~~ 209 (386)
....+..|+...|.|.+.. ...|+++|-|-++.. ....... ..-..|.+.++-.+|.|.|+|.+.-.
T Consensus 11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~ 90 (104)
T d1xaua_ 11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 90 (104)
T ss_dssp EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence 3446778999999999853 457899998854321 1111111 12346889999999999999999876
Q ss_pred CCCceeeeEEEEE
Q psy8823 210 VGKGTRRNIAVEV 222 (386)
Q Consensus 210 ~~~~~~~~~~l~v 222 (386)
.+...+.++++.|
T Consensus 91 s~vieSHSvti~V 103 (104)
T d1xaua_ 91 SQVINSHSVTIHV 103 (104)
T ss_dssp TEEEECCCEEEEE
T ss_pred hhheecceEEEEe
Confidence 6655555566554
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.79 E-value=6.4e-05 Score=51.56 Aligned_cols=81 Identities=12% Similarity=0.288 Sum_probs=47.6
Q ss_pred eCCCcccccCCCcEEEEEEEEecC--CCeeEEEeCC---eeeeee---c-CceeEEe------eeeecCceeeeEEEEee
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAYP--PPAIVWIKED---TQQVLT---N-NQHYSIS------HFATADEFTDTTIRVIT 294 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~---~~~~~~---~-~~~~~~~------~~~~~~~~~~~~L~i~~ 294 (386)
.++..+....|++++|.|.+.+.. ...+.|++-. .+..+. . ....... ............|.|.+
T Consensus 6 Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~ 85 (120)
T d1ypzf1 6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYS 85 (120)
T ss_dssp CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECS
T ss_pred cCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccc
Confidence 344455667899999999986542 3468998732 211111 1 1110000 01111122356799999
Q ss_pred cccCCCeEEEEEEEcC
Q psy8823 295 IEKRQYGSYICRAANK 310 (386)
Q Consensus 295 ~~~~d~G~Y~C~a~n~ 310 (386)
++.+|+|.|.|.+...
T Consensus 86 l~~~Dsa~YyCA~~~~ 101 (120)
T d1ypzf1 86 LEEEDEAIYYCSYGEG 101 (120)
T ss_dssp CCGGGCSEEEEEECCT
T ss_pred cccccceeEEEEEcCC
Confidence 9999999999987543
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.79 E-value=0.00011 Score=49.96 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=46.1
Q ss_pred CCceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee--e------CCC---------CceE-----EeeeEEEECCCCCCC
Q psy8823 141 STRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA--I------LPT---------GGSI-----YRGSILKIPQITKED 198 (386)
Q Consensus 141 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~------~~~---------~~~~-----~~~~~l~i~~~~~~d 198 (386)
.+..+.+.+|++++|.|.... ....+.||+.... + ... .... .....|.|.++..+|
T Consensus 5 sP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 83 (114)
T d1ogae1 5 SPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP 83 (114)
T ss_dssp SCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred cCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence 356678999999999998752 3457999974311 0 000 0000 013479999999999
Q ss_pred CeEEEEEEecC
Q psy8823 199 RGTYYCVAENG 209 (386)
Q Consensus 199 ~g~y~C~~~~~ 209 (386)
+|.|.|.....
T Consensus 84 Sa~YyCa~~~~ 94 (114)
T d1ogae1 84 TAFYLCASSSR 94 (114)
T ss_dssp CEEEEEEEESS
T ss_pred ceeEEEeeccC
Confidence 99999987653
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.77 E-value=6.8e-05 Score=49.28 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=43.6
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+... ...|+..+|.|.+.+. +...|+|.+++........ ........++.|. .+...
T Consensus 4 ~P~V~l~~~~~-~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~---~~~~~~~~dgtf~----------~~s~l 69 (98)
T d1d5mb1 4 YPEVTVYPAKT-QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVV---STGLIQNGDWTFQ----------TLVML 69 (98)
T ss_dssp CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEE---ECCCEECSSSCEE----------EEEEE
T ss_pred CCEEEEECCCc-cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCE---ECeEEeCCCcEEE----------EEEEe
Confidence 46666654432 4457778999999863 4457999998876532211 1111111222232 22233
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
.+...+...|+|++.+..
T Consensus 70 ~~~~~~~~~ytC~V~H~s 87 (98)
T d1d5mb1 70 ETVPRSGEVYTCQVEHPS 87 (98)
T ss_dssp ECCCCTTCEEEEEEECTT
T ss_pred eEcCCCCCEEEEEEEECC
Confidence 456677889999998753
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.76 E-value=4.5e-05 Score=51.25 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=46.2
Q ss_pred ceEEEeCCccEEEEEEeeee--CCCeEEEEEc--Cee---eC-CC-----------CceEE------eeeEEEECCCCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGH--PTPRISWRRE--NNA---IL-PT-----------GGSIY------RGSILKIPQITKE 197 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~---~~-~~-----------~~~~~------~~~~l~i~~~~~~ 197 (386)
....+.+|++++|.|...+. ....+.|++. ++. +. .. ++... ....|+|.+++.+
T Consensus 3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e 82 (110)
T d1u9ka_ 3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT 82 (110)
T ss_dssp EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence 45678899999999998653 3456889984 221 10 00 00011 1246999999999
Q ss_pred CCeEEEEEEecCCC
Q psy8823 198 DRGTYYCVAENGVG 211 (386)
Q Consensus 198 d~g~y~C~~~~~~~ 211 (386)
|+|.|.|...+...
T Consensus 83 Dsa~YyCa~~~~~~ 96 (110)
T d1u9ka_ 83 DSGLYRCVIYHPPN 96 (110)
T ss_dssp GCEEEEEEEECTTS
T ss_pred CCEEEEEEEeCCCC
Confidence 99999999866443
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.76 E-value=3.9e-05 Score=51.08 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=50.8
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.+.+.++......++.++|.|.+.+. ....|+|.++|...... ... ......++.|... ..|.|
T Consensus 3 ~~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~---~~~-~~~~~~dgtys~~-------S~L~v 71 (102)
T d1igtb4 3 RAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNY---KNT-EPVLDSDGSYFMY-------SKLRV 71 (102)
T ss_dssp BCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE---EEC-CCEECTTSCEEEE-------EEEEE
T ss_pred CCCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCc---EEc-cceeCCCCcEEEE-------EEEEE
Confidence 34667665443333357889999999863 34679999988643211 111 1111223334332 26777
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
..-..+....|+|++.+..
T Consensus 72 ~~~~W~~~~~ytC~V~H~~ 90 (102)
T d1igtb4 72 EKKNWVERNSYSCSVVHEG 90 (102)
T ss_dssp EHHHHHTCCCEEEEEECTT
T ss_pred CHHHcCCCCEEEEEEEeCC
Confidence 6655455668999998754
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.74 E-value=4.8e-05 Score=51.66 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=45.6
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCC--e-eeeee---cCceeEEe------eeeecCceeeeEEEEeecccCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKED--T-QQVLT---NNQHYSIS------HFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~-~~~~~---~~~~~~~~------~~~~~~~~~~~~L~i~~~~~~d 299 (386)
|....+.+|++++|.|...+ ....+.|++-. . +..+. ........ ............|+|.+++++|
T Consensus 6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 84 (112)
T d1kgce1 6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED 84 (112)
T ss_dssp CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence 34455678999999998643 34578998732 1 11111 11100000 0111112235689999999999
Q ss_pred CeEEEEEEEc
Q psy8823 300 YGSYICRAAN 309 (386)
Q Consensus 300 ~G~Y~C~a~n 309 (386)
+|.|.|.+..
T Consensus 85 sa~YyCa~~~ 94 (112)
T d1kgce1 85 SAVYLCASSL 94 (112)
T ss_dssp CEEEEEEEES
T ss_pred CEEEEEeeeC
Confidence 9999998753
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=3.3e-05 Score=51.45 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=49.5
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.|.+.+.++...-..++.++|.|.+.+. ....|+|.+++....... . .......++.|.. ...|.|.
T Consensus 4 ~P~V~i~~ps~~~~~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~---~-~~~~~~~dgtys~-------~S~L~v~ 72 (102)
T d1l6xa2 4 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK---T-TPPVLDSDGSFFL-------YSKLTVD 72 (102)
T ss_dssp CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE---E-CCCEECTTSCEEE-------EEEEEEE
T ss_pred CCEEEEECcCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEECCCeE---E-cceEECCCCCEEE-------EEEEEEC
Confidence 4566655433322357889999999864 346799999886542210 0 1111122333333 2267776
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
.-.....-.|+|++.+..
T Consensus 73 ~~~w~~g~~ytC~V~H~~ 90 (102)
T d1l6xa2 73 KSRWQQGNVFSCSVMHEA 90 (102)
T ss_dssp HHHHHTTCCEEEEEECTT
T ss_pred HHHcCCCCEEEEEEEeCC
Confidence 655555558999999754
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.74 E-value=9.4e-05 Score=50.73 Aligned_cols=77 Identities=13% Similarity=0.273 Sum_probs=48.5
Q ss_pred CCCcccccCCCcEEEEEEEEecC--CCeeEEEeC--C-eeeeee-cC--------ceeEEeeeeecCceeeeEEEEeecc
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYP--PPAIVWIKE--D-TQQVLT-NN--------QHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~--~-~~~~~~-~~--------~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.+....+..|++++|.|...+.. ...+.|++. + ....+. .. .++.... ........|.|.+++
T Consensus 7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~---~~~~~~~~L~i~~~~ 83 (120)
T d1hxma1 7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDI---DIAKNLAVLKILAPS 83 (120)
T ss_dssp SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEE---EGGGTEEEEEESSCC
T ss_pred cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeec---cccccceeccccccc
Confidence 44455677899999999987643 346899872 2 121111 11 1111111 111235789999999
Q ss_pred cCCCeEEEEEEEcC
Q psy8823 297 KRQYGSYICRAANK 310 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~ 310 (386)
.+|+|.|.|.....
T Consensus 84 ~~Dsa~YyCA~~~~ 97 (120)
T d1hxma1 84 ERDEGSYYCACDTL 97 (120)
T ss_dssp GGGCEEEEEEEECC
T ss_pred ccCCceeecCcccC
Confidence 99999999987654
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.73 E-value=8.6e-05 Score=48.83 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=48.8
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
..+|.+.+.+... +..|+.++|.|.+.+. +...|+|.++|..+.... .........++.|... ..|.
T Consensus 3 ~~~P~V~v~~~~~-~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~---~~~~~~~~~dgtf~~~-------s~l~ 71 (99)
T d1uvqa1 3 NEVPEVTVFSKSP-VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGV---SETSFLSKSDHSFFKI-------SYLT 71 (99)
T ss_dssp CCCCEEEEEESSC-CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTE---EECCCEECTTSCEEEE-------EEEE
T ss_pred CcCCEEEEEcCCc-ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCc---EecceEECCCCCEEEE-------EEEE
Confidence 4567777754432 5578899999999875 446699999887653211 0111111122233221 2455
Q ss_pred EcccCCCCCeEEEEEeEEc
Q psy8823 100 VKDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~ 118 (386)
+. .+|...|+|++.+.
T Consensus 72 v~---~~~~~~ytC~V~H~ 87 (99)
T d1uvqa1 72 FL---PSADEIYDCKVEHW 87 (99)
T ss_dssp EC---CCTTCCEEEEEECT
T ss_pred Ec---CCCCCEEEEEEEeC
Confidence 44 34556899999865
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=2.9e-05 Score=53.34 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=43.8
Q ss_pred CceEEEeCCccEEEEEEeeeeC-CC--eEEEEEcC--eee--C----C-C------Cc-e-----EEeeeEEEECCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHP-TP--RISWRREN--NAI--L----P-T------GG-S-----IYRGSILKIPQITKE 197 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~-~~--~v~W~~~~--~~~--~----~-~------~~-~-----~~~~~~l~i~~~~~~ 197 (386)
+..+.+.+|++++|.|...... .. .+.|++.. +.. . . . .. . ......|.|.+++.+
T Consensus 6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (117)
T d1dqta_ 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV 85 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence 3456678899999999985332 22 47899842 111 0 0 0 00 0 011357999999999
Q ss_pred CCeEEEEEEec
Q psy8823 198 DRGTYYCVAEN 208 (386)
Q Consensus 198 d~g~y~C~~~~ 208 (386)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (117)
T d1dqta_ 86 DTGLYLCKVEL 96 (117)
T ss_dssp GCEEEEEEEEE
T ss_pred cCEeEEEEEec
Confidence 99999998864
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=97.72 E-value=5.2e-05 Score=51.48 Aligned_cols=80 Identities=14% Similarity=0.295 Sum_probs=45.6
Q ss_pred eCCCcccccCCCcEEEEEEEEec---CC---CeeEEEeC--Cee-eeeecCceeEEe----eeeecCceeeeEEEEeecc
Q psy8823 230 VPKPRLGQALQYDMDLECHVEAY---PP---PAIVWIKE--DTQ-QVLTNNQHYSIS----HFATADEFTDTTIRVITIE 296 (386)
Q Consensus 230 ~~~~~~~~~~g~~~~l~C~~~g~---p~---~~~~W~~~--~~~-~~~~~~~~~~~~----~~~~~~~~~~~~L~i~~~~ 296 (386)
..|....+.+|++++|.|...+. .. ..+.|++. +.. ..+......... .+..........|.|.+++
T Consensus 6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~ 85 (113)
T d1q9ra1 6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ 85 (113)
T ss_dssp EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc
Confidence 34455667789999999987532 11 24889873 221 111110000000 0000111234579999999
Q ss_pred cCCCeEEEEEEEc
Q psy8823 297 KRQYGSYICRAAN 309 (386)
Q Consensus 297 ~~d~G~Y~C~a~n 309 (386)
.+|+|.|.|.+.+
T Consensus 86 ~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 86 AEDLAVYYCKQSY 98 (113)
T ss_dssp GGGCEEEEEEECS
T ss_pred cCCCeEEEecccC
Confidence 9999999998654
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=5e-05 Score=52.11 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=44.5
Q ss_pred CceEEEeCCccEEEEEEeeeeCCC---eEEEEEcCeeeC---------------CC------CceEEeeeEEEECCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTP---RISWRRENNAIL---------------PT------GGSIYRGSILKIPQITKE 197 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~---------------~~------~~~~~~~~~l~i~~~~~~ 197 (386)
+..+.+.+|+.++|.|........ .+.|++....-. .. .........|.|.+++.+
T Consensus 6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (118)
T d1i8lc_ 6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM 85 (118)
T ss_dssp CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence 445667889999999998433222 588998532100 00 001112457999999999
Q ss_pred CCeEEEEEEec
Q psy8823 198 DRGTYYCVAEN 208 (386)
Q Consensus 198 d~g~y~C~~~~ 208 (386)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 86 DTGLYICKVEL 96 (118)
T ss_dssp GCEEEEEEEEE
T ss_pred CCEEEEEeEec
Confidence 99999998865
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.72 E-value=6.4e-05 Score=50.91 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=45.0
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeCC--ee-eeee---cCceeEEe-----ee-eecCceeeeEEEEeecccCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKED--TQ-QVLT---NNQHYSIS-----HF-ATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~-~~~~---~~~~~~~~-----~~-~~~~~~~~~~L~i~~~~~~d 299 (386)
|....+.+|++++|.|...+. ...+.|++-. .. ..+. ........ .+ ..........|+|.++..+|
T Consensus 6 P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D 84 (111)
T d2esve1 6 PSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED 84 (111)
T ss_dssp CSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred CCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence 444556789999999985432 4478998632 21 1111 11000000 00 11111234689999999999
Q ss_pred CeEEEEEEEc
Q psy8823 300 YGSYICRAAN 309 (386)
Q Consensus 300 ~G~Y~C~a~n 309 (386)
+|.|.|.+..
T Consensus 85 sa~YyCa~~~ 94 (111)
T d2esve1 85 SGVYFCASSQ 94 (111)
T ss_dssp CEEEEEEEES
T ss_pred CceEEEeeeC
Confidence 9999998654
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.69 E-value=0.00014 Score=50.09 Aligned_cols=76 Identities=21% Similarity=0.447 Sum_probs=46.6
Q ss_pred CCCcccccCCCcEEEEEEEEecC--CCeeEEEeCC--e-eeeee---cC-----------ceeEEeeeeecCceeeeEEE
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYP--PPAIVWIKED--T-QQVLT---NN-----------QHYSISHFATADEFTDTTIR 291 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p--~~~~~W~~~~--~-~~~~~---~~-----------~~~~~~~~~~~~~~~~~~L~ 291 (386)
++.......|++++|.|.+.|.. ...+.|++-. + +..+. .. .++.... ........|.
T Consensus 7 p~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L~ 83 (123)
T d1hxmb1 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDR---IPETSTSTLT 83 (123)
T ss_dssp CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEE---ETTTTEEEEE
T ss_pred CCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEee---eccccceeec
Confidence 33445567799999999998753 3368898732 1 11111 11 1111110 0112345799
Q ss_pred EeecccCCCeEEEEEEEc
Q psy8823 292 VITIEKRQYGSYICRAAN 309 (386)
Q Consensus 292 i~~~~~~d~G~Y~C~a~n 309 (386)
|.+++.+|+|.|.|.+..
T Consensus 84 i~~l~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 84 IHNVEKQDIATYYCALWE 101 (123)
T ss_dssp ECSCCGGGCEEEEEEEEE
T ss_pred ccccccccCcEEEEeeeC
Confidence 999999999999998754
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.69 E-value=0.00011 Score=47.51 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=45.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.||.+.+.... ..++.++|.|.+.+. ....|+|.+++........ ......++.|... ..|.+
T Consensus 2 ~PP~V~v~~~~---~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~-----~~~~~~dgty~~~-------S~l~v 66 (91)
T d3frua1 2 EPPSMRLKARP---GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNC-----STGPNGDGSFHAW-------SLLEV 66 (91)
T ss_dssp BCCEEEEEEEE---CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEE-----EEEECSSSCEEEE-------EEEEE
T ss_pred CCCEEEEEecC---CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCc-----cceecCCCCEeEE-------EEEEE
Confidence 36777764322 245689999999864 3457999998865422110 1111122233222 24555
Q ss_pred cccCCCCCeEEEEEeEEc
Q psy8823 101 KDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~ 118 (386)
. .+|...|+|++.+.
T Consensus 67 ~---~~~~~~ytC~V~H~ 81 (91)
T d3frua1 67 K---RGDEHHYQCQVEHE 81 (91)
T ss_dssp E---TTCGGGEEEEEECT
T ss_pred C---CCCCCEEEEEEEeC
Confidence 3 35667899999864
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=1e-05 Score=54.72 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=44.3
Q ss_pred EeCCccEEEEEEeeeeCC--CeEEEEEcCeeeCCCC--------------ceEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 147 VSEGQPVQLECFAGGHPT--PRISWRRENNAILPTG--------------GSIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~--------------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
+..++.++|.|.+.++.+ ..|+|+++|..+.... +.....+.|.|..-.......|+|.+.+..
T Consensus 17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s 96 (108)
T d1ow0a2 17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA 96 (108)
T ss_dssp TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence 345788999999988643 3799999988764321 122234556666655555669999999865
Q ss_pred C
Q psy8823 211 G 211 (386)
Q Consensus 211 ~ 211 (386)
.
T Consensus 97 l 97 (108)
T d1ow0a2 97 L 97 (108)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.69 E-value=2.2e-05 Score=52.82 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=50.6
Q ss_pred ccCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 22 QRTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 22 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
..+|.+.+.++...-..++.++|.|.+.+. ....|+|.+++.......... .......++.|.. ...|.
T Consensus 3 ~~~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~--~~~~~~~dgtys~-------~S~L~ 73 (107)
T d1mjul2 3 DAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS--WTDQDSKDSTYSM-------SSTLT 73 (107)
T ss_dssp CBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEE--ECCCCTTTCCEEE-------EEEEE
T ss_pred CcCCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEec--cccEecCCCCEEE-------EEEEE
Confidence 456777776543333356789999999864 345799999886543211100 0000011222322 22577
Q ss_pred EcccCCCCCeEEEEEeEEcc
Q psy8823 100 VKDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~ 119 (386)
|..-.......|+|.+.+..
T Consensus 74 v~~~~W~~g~~ytC~V~H~~ 93 (107)
T d1mjul2 74 LTKDEYERHNSYTCEATHKT 93 (107)
T ss_dssp EEHHHHHTCCEEEEEEECTT
T ss_pred ECHHHhCCCCEEEEEEEECC
Confidence 76665555668999998643
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.68 E-value=8e-05 Score=49.35 Aligned_cols=85 Identities=15% Similarity=0.204 Sum_probs=49.8
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.++.......+.++|.|.+.+. ....|+|.+++....... . .......++.|... ..|.|.
T Consensus 3 ~P~V~i~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~---~-~~~~~~~dgtys~~-------S~L~v~ 71 (101)
T d1cqka_ 3 APQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYK---N-TQPIMDTDGSYFVY-------SKLNVQ 71 (101)
T ss_dssp CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEE---E-CCCEECTTSCEEEE-------EEEEEE
T ss_pred CCEEEEECCCHHHHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcE---E-eeeecCCCCcEEEE-------EEEEEC
Confidence 4566665443333356789999999864 346699999886542211 0 11112223333332 267776
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
.-.......|+|++.+..
T Consensus 72 ~~~w~~~~~ytC~V~H~~ 89 (101)
T d1cqka_ 72 KSNWEAGNTFTCSVLHEG 89 (101)
T ss_dssp HHHHHTTCCEEEEEECTT
T ss_pred HHHhCCCCEEEEEEEECC
Confidence 655555678999998753
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00024 Score=42.80 Aligned_cols=58 Identities=19% Similarity=0.388 Sum_probs=38.3
Q ss_pred eecCCcEEEEEEEeeCCC--CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEE
Q psy8823 36 KDIGGTVELKCSVQYAQD--YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRC 113 (386)
Q Consensus 36 v~~G~~v~L~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 113 (386)
...|..+.|.|....+.. ..-.|.|++..+.+. +. ....-.+.|.. .+|+|.|.|
T Consensus 9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed---------------~~------~~~~tey~V~~--~D~SGeY~C 65 (80)
T d3b5ha2 9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED---------------AL------PGQKTEFKVDS--DDQWGEYSC 65 (80)
T ss_dssp EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECT---------------TC------CCSEEEEEECG--GGCCEEEEE
T ss_pred ccCCCCEEEEEECCCCCCceeeeEEeeCCEEcccc---------------CC------CCCceEEEEec--CCCCceEEE
Confidence 457899999999985533 236899988765321 10 01122556654 789999999
Q ss_pred EeE
Q psy8823 114 QVI 116 (386)
Q Consensus 114 ~~~ 116 (386)
.+.
T Consensus 66 VFl 68 (80)
T d3b5ha2 66 VFL 68 (80)
T ss_dssp EEE
T ss_pred EEc
Confidence 975
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.67 E-value=8.6e-05 Score=49.34 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=50.4
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.|.+.+.++......++.++|.|.+.+. ....|+|.+++...... .. .......++.|... ..|.|.
T Consensus 4 ~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~---~~-~~~~~~~dgt~s~~-------S~L~v~ 72 (102)
T d1i1ca2 4 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENY---KN-TPPTMDTDGSYFLY-------SKLNVK 72 (102)
T ss_dssp CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE---EE-CCCEECTTSCEEEE-------EEEEEE
T ss_pred CCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCc---EE-cccEeCCCCCEEEE-------EEEEEC
Confidence 4566665443333346789999999864 34579999998654211 01 11111223333332 257777
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
.....+...|+|++.+..
T Consensus 73 ~~~w~~~~~ytC~V~H~~ 90 (102)
T d1i1ca2 73 KETWQQGNTFTCSVLHEG 90 (102)
T ss_dssp HHHHHTTCCEEEEEECTT
T ss_pred HHHhCCCCEEEEEEEeCC
Confidence 766566668999998754
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.66 E-value=8.2e-05 Score=50.56 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=46.5
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCC--e-eeeee---cCceeEEe-----eeeecCceeeeEEEEeecccCC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKED--T-QQVLT---NNQHYSIS-----HFATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~-~~~~~---~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d 299 (386)
.+....+.+|++++|.|... .....+.|++-. . +..+. ........ ............|.|.+++.+|
T Consensus 6 sP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D 84 (113)
T d1j8he1 6 SSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQ 84 (113)
T ss_dssp SCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGG
T ss_pred cCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCC
Confidence 44455667899999999864 334578898732 1 11111 01100100 0011111234679999999999
Q ss_pred CeEEEEEEEcC
Q psy8823 300 YGSYICRAANK 310 (386)
Q Consensus 300 ~G~Y~C~a~n~ 310 (386)
+|.|.|.+...
T Consensus 85 sa~YyCa~~~~ 95 (113)
T d1j8he1 85 TSMYLCASSST 95 (113)
T ss_dssp CEEEEEEEECT
T ss_pred cccEEeeEccC
Confidence 99999988753
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.64 E-value=1.8e-06 Score=56.97 Aligned_cols=66 Identities=21% Similarity=0.492 Sum_probs=43.7
Q ss_pred EEEeCCccEEEEEEeeeeCCCeEEEEEc--CeeeC------------CCCceE------EeeeEEEECCCCCCCCeEEEE
Q psy8823 145 LVVSEGQPVQLECFAGGHPTPRISWRRE--NNAIL------------PTGGSI------YRGSILKIPQITKEDRGTYYC 204 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------------~~~~~~------~~~~~l~i~~~~~~d~g~y~C 204 (386)
+.|.+|++++|.|..... ...+.||+. +.... ...+.. .....|.|.+++.+|+|.|.|
T Consensus 3 lsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC 81 (96)
T d1ymmd1 3 LSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC 81 (96)
T ss_dssp CCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred ceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence 357899999999987542 346999973 22110 000000 013469999999999999999
Q ss_pred EEecCCC
Q psy8823 205 VAENGVG 211 (386)
Q Consensus 205 ~~~~~~~ 211 (386)
.+....+
T Consensus 82 A~~~~~g 88 (96)
T d1ymmd1 82 ATDTTSG 88 (96)
T ss_dssp EEEETTS
T ss_pred eEecCCC
Confidence 8876544
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.61 E-value=0.00015 Score=49.26 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=45.9
Q ss_pred CcccccCCCcEEEEEEEEecCCCeeEEEe--CCeee-eee--cCceeEEe-e-----eeecCceeeeEEEEeecccCCCe
Q psy8823 233 PRLGQALQYDMDLECHVEAYPPPAIVWIK--EDTQQ-VLT--NNQHYSIS-H-----FATADEFTDTTIRVITIEKRQYG 301 (386)
Q Consensus 233 ~~~~~~~g~~~~l~C~~~g~p~~~~~W~~--~~~~~-~~~--~~~~~~~~-~-----~~~~~~~~~~~L~i~~~~~~d~G 301 (386)
....+.+|++++|.|...+. ...+.|++ .+... .+. ........ . ...........|+|.+++++|+|
T Consensus 7 ~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 85 (113)
T d2ntsp1 7 RYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSA 85 (113)
T ss_dssp SEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCE
T ss_pred CeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccce
Confidence 34556789999999986443 35789997 23221 111 00000000 0 01111123568999999999999
Q ss_pred EEEEEEEcC
Q psy8823 302 SYICRAANK 310 (386)
Q Consensus 302 ~Y~C~a~n~ 310 (386)
.|.|.+...
T Consensus 86 ~YyCA~~~~ 94 (113)
T d2ntsp1 86 LYLCASSLA 94 (113)
T ss_dssp EEEEEEESS
T ss_pred eeeeeeeCC
Confidence 999988654
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=3.7e-05 Score=51.20 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=50.2
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.+.+.++...-..++.++|.|.+.+. ....|+|.+++..+..... ........++.|... ..|.|
T Consensus 4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~---~~~~~~~~dgtys~~-------S~L~v 73 (102)
T d1rzfl2 4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVE---TTTPSKQSNNKYAAS-------SYLSL 73 (102)
T ss_dssp BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEE---ECCCEECTTSCEEEE-------EEEEE
T ss_pred CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEE---eCCcEECCCCEEEEE-------EEEEE
Confidence 35677765444333357789999999864 3456999998865532111 011111123333332 26777
Q ss_pred cccCCCCCeEEEEEeEEc
Q psy8823 101 KDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~ 118 (386)
..........|+|++.+.
T Consensus 74 ~~~~w~~~~~ytC~V~H~ 91 (102)
T d1rzfl2 74 TPEQWKSHRSYSCQVTHE 91 (102)
T ss_dssp CHHHHHHSSCEEEEEEET
T ss_pred CHHHhCCCCEEEEEEEEC
Confidence 665544456899999875
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00052 Score=41.32 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=38.3
Q ss_pred CCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEE
Q psy8823 239 LQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAA 308 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 308 (386)
.|..+.|.|.....+.+ .-.|.|+|.. +.....- .....+.|.. .+++|.|.|...
T Consensus 11 ~~sk~~LtCnLt~s~~~i~ghrW~K~gkv--l~ed~~~----------~~~tey~V~~--~D~SGeY~CVFl 68 (80)
T d3b5ha2 11 LGSKILLTCSLNDSATEVTGHRWLKGGVV--LKEDALP----------GQKTEFKVDS--DDQWGEYSCVFL 68 (80)
T ss_dssp ETTEEEEEEEEESCSSCCCEEEEESSSEE--EECTTCC----------CSEEEEEECG--GGCCEEEEEEEE
T ss_pred CCCCEEEEEECCCCCCceeeeEEeeCCEE--ccccCCC----------CCceEEEEec--CCCCceEEEEEc
Confidence 46788999999765444 5789999998 4432211 1234455553 789999999964
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00042 Score=46.03 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=42.7
Q ss_pred eCCccEEEEEEeeeeCC--CeEEEEEcCeeeCCC---------CceEEeeeEEEECCCCCC--CCeEEEEEEecCCCC
Q psy8823 148 SEGQPVQLECFAGGHPT--PRISWRRENNAILPT---------GGSIYRGSILKIPQITKE--DRGTYYCVAENGVGK 212 (386)
Q Consensus 148 ~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~--d~g~y~C~~~~~~~~ 212 (386)
...+.++|.|.+.|+.+ ..|+|.+++...... ++.....+.|.+...... ....|+|.+.+....
T Consensus 19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~ 96 (105)
T d1dn0b2 19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN 96 (105)
T ss_dssp --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence 34678999999988643 479999988765321 112223456777776654 234899999987654
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00012 Score=47.41 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=43.6
Q ss_pred cceeeecCCcEEEEEEEeeCCCCcEE-EEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEcccCCCCCeE
Q psy8823 32 QEQIKDIGGTVELKCSVQYAQDYPVI-WMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGY 110 (386)
Q Consensus 32 ~~~~v~~G~~v~L~C~~~~~~~~~v~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 110 (386)
+-..+.+|+++.|+|.++ .|...++ |...+..... .+ ..+ ..+... -+.|.+.+..|+|.
T Consensus 13 ~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p------~g-------~~v--~~Dpk~---Gf~I~~~~~~~~g~ 73 (95)
T d1fltx_ 13 EIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIP------DG-------KRI--IWDSRK---GFIISNATYKEIGL 73 (95)
T ss_dssp EEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECC------CS-------SSE--EEETTT---EEEESSCCGGGCEE
T ss_pred CEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCC------CC-------CEE--EECCCC---CEEEeCCCcccCeE
Confidence 335588999999999998 4555554 4434332210 01 111 111111 48899999999999
Q ss_pred EEEEeEEcc
Q psy8823 111 YRCQVIIGI 119 (386)
Q Consensus 111 Y~C~~~~~~ 119 (386)
|.|.+..+.
T Consensus 74 y~C~a~~~g 82 (95)
T d1fltx_ 74 LTCEATVNG 82 (95)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEECC
Confidence 999998653
|
| >d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.55 E-value=2.8e-05 Score=52.66 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCCcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCc
Q psy8823 239 LQYDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGT 313 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 313 (386)
.+..++|.|.+.|+.+. .|.|.+++..... ........++.+...+.|.+..-.+..+-.|+|.|.+....
T Consensus 26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~----~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l~ 98 (111)
T d1pfca_ 26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYK----NTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEALP 98 (111)
T ss_dssp CTTSCCEEEEEESCCSSCCEEESSSCCTTTEE----EEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETTTT
T ss_pred cCCceEEEEEEEeeECCCcEEEEeeCCCCCcE----EcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence 45678999999986443 7999887743111 11111112223334555655554444455699999997543
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.53 E-value=0.00086 Score=45.17 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=47.6
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCC--ee-eeee---cCceeEEeeee----ecCceeeeEEEEeecccCCC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKED--TQ-QVLT---NNQHYSISHFA----TADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~--~~-~~~~---~~~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~ 300 (386)
.|....+.+|++++|.|.........+.|++-. .. ..+. ........... .........|.|..+..+|+
T Consensus 7 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~ds 86 (112)
T d1fo0b_ 7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG 86 (112)
T ss_dssp ECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC
T ss_pred CCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCC
Confidence 344556778999999999866555678999742 22 1111 01111111000 00112345788999999999
Q ss_pred eEEEEEEEcC
Q psy8823 301 GSYICRAANK 310 (386)
Q Consensus 301 G~Y~C~a~n~ 310 (386)
+.|.|.+...
T Consensus 87 a~Y~Ca~~~~ 96 (112)
T d1fo0b_ 87 RTLYCTCSAD 96 (112)
T ss_dssp EEEEEEEESS
T ss_pred ccEEEEEecC
Confidence 9999997543
|
| >d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.53 E-value=0.00055 Score=45.20 Aligned_cols=73 Identities=12% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCCcEEEEEEEEec-CCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCCce
Q psy8823 239 LQYDMDLECHVEAY-PPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLGTS 314 (386)
Q Consensus 239 ~g~~~~l~C~~~g~-p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 314 (386)
.++.++|.|.+.|+ |+. .+.|.+++....... ........+.+...+.|.|..........|+|.|.+.....
T Consensus 18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~---~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~~ 93 (102)
T d2fbjh2 18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN---FPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV 93 (102)
T ss_dssp CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE---CCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeE---eeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCCC
Confidence 46789999999995 543 466777765522111 11112223334466788888888777778999999875543
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.52 E-value=3.2e-05 Score=53.85 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=43.8
Q ss_pred eCCccEEEEEEeeeeCC--CeEEEEEcCeeeCCC---------------CceEEeeeEEEECCCCCCCCe-EEEEEEecC
Q psy8823 148 SEGQPVQLECFAGGHPT--PRISWRRENNAILPT---------------GGSIYRGSILKIPQITKEDRG-TYYCVAENG 209 (386)
Q Consensus 148 ~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~ 209 (386)
..+..++|.|.+.++.+ ..|+|+++|..+... +......+.|.+......+.| .|+|.+.+.
T Consensus 18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~ 97 (127)
T d1ogae2 18 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY 97 (127)
T ss_dssp HHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred ccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence 34677899999988654 369999999876432 112233457887776666655 799999885
Q ss_pred C
Q psy8823 210 V 210 (386)
Q Consensus 210 ~ 210 (386)
.
T Consensus 98 ~ 98 (127)
T d1ogae2 98 G 98 (127)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.50 E-value=0.00013 Score=48.90 Aligned_cols=64 Identities=13% Similarity=0.236 Sum_probs=42.7
Q ss_pred EeCCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCCC
Q psy8823 147 VSEGQPVQLECFAGGHPTP--RISWRRENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVGK 212 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 212 (386)
+..+..++|.|.+.++.+. .++|.++|..+.... +.....+.|.+..... ...|+|.+.+....
T Consensus 21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~ 95 (107)
T d1hxmb2 21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNK 95 (107)
T ss_dssp GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSG
T ss_pred HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCC
Confidence 4557789999999886543 699999987654321 1122345677765543 23799999986554
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.50 E-value=6.1e-05 Score=51.12 Aligned_cols=67 Identities=18% Similarity=0.379 Sum_probs=45.0
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEEEEEcCee--e------CCC---------CceE-----EeeeEEEECCCCCCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRISWRRENNA--I------LPT---------GGSI-----YRGSILKIPQITKEDR 199 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~------~~~---------~~~~-----~~~~~l~i~~~~~~d~ 199 (386)
|..+.+.+|++++|.|..... ...+.||+.... . ... .... .....|.|.++..+|+
T Consensus 5 P~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds 83 (112)
T d2cdeb1 5 PRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHT 83 (112)
T ss_dssp CSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTC
T ss_pred CCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccc
Confidence 455678899999999987432 346999984311 0 000 0000 1134699999999999
Q ss_pred eEEEEEEecC
Q psy8823 200 GTYYCVAENG 209 (386)
Q Consensus 200 g~y~C~~~~~ 209 (386)
|.|.|.+...
T Consensus 84 a~YyCA~~~~ 93 (112)
T d2cdeb1 84 SQYLCASSEN 93 (112)
T ss_dssp SEEEEEEECS
T ss_pred ccEEEEEecC
Confidence 9999988654
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.49 E-value=7.5e-05 Score=50.65 Aligned_cols=77 Identities=12% Similarity=0.224 Sum_probs=45.5
Q ss_pred CCcccccCCCcEEEEEEEEecCCCeeEEEeC--Cee-eee---ecCceeEEee-----eeecCceeeeEEEEeecccCCC
Q psy8823 232 KPRLGQALQYDMDLECHVEAYPPPAIVWIKE--DTQ-QVL---TNNQHYSISH-----FATADEFTDTTIRVITIEKRQY 300 (386)
Q Consensus 232 ~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~--~~~-~~~---~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~ 300 (386)
|....+.+|++++|.|.... ....+.|++- +.. ..+ .......... ...........|.|.++.++|+
T Consensus 6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 84 (112)
T d2bnub1 6 PKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQT 84 (112)
T ss_dssp CSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGC
T ss_pred CCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHC
Confidence 33445678999999998753 3457999873 221 111 1111111110 1111122345799999999999
Q ss_pred eEEEEEEEc
Q psy8823 301 GSYICRAAN 309 (386)
Q Consensus 301 G~Y~C~a~n 309 (386)
|.|.|.+..
T Consensus 85 avYyCA~~~ 93 (112)
T d2bnub1 85 SVYFCASSY 93 (112)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEeecC
Confidence 999998764
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=97.47 E-value=0.0002 Score=46.67 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=45.7
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+...+ ...++.++|.|.+.+. | ...|+|++++....... ........++.|... ..|.|.
T Consensus 3 ~P~V~l~~~~--~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~----~~~~~~~~dgty~~~-------S~L~v~ 69 (96)
T d2h26a1 3 KPEAWLSSGP--SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQ----LGDILPNANWTWYLR-------ATLDVA 69 (96)
T ss_dssp CCEEEEEEES--CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCE----ECCCEECTTSCEEEE-------EEEEEE
T ss_pred CCEEEEEcCC--CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCce----eCccEeCCCCcEEEE-------EEEEEe
Confidence 4566654433 2346689999999864 3 34699999876542211 011112223333332 246554
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
. +|...|+|++.+..
T Consensus 70 ~---~~~~~ytC~V~H~s 84 (96)
T d2h26a1 70 D---GEAAGLSCRVKHSS 84 (96)
T ss_dssp G---GGCTTEEEEEEEGG
T ss_pred C---ccCCEEEEEEEeCC
Confidence 4 45568999998754
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.45 E-value=0.00024 Score=48.10 Aligned_cols=80 Identities=10% Similarity=0.136 Sum_probs=47.4
Q ss_pred CCCcccccCCCcEEEEEEEEecCCCeeEEEeCCee---eee---ecCceeEEee-----eeecCceeeeEEEEeecccCC
Q psy8823 231 PKPRLGQALQYDMDLECHVEAYPPPAIVWIKEDTQ---QVL---TNNQHYSISH-----FATADEFTDTTIRVITIEKRQ 299 (386)
Q Consensus 231 ~~~~~~~~~g~~~~l~C~~~g~p~~~~~W~~~~~~---~~~---~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d 299 (386)
.|....+.+|+.++|.|..... ...+.|++-... ..+ .......... ...........|+|.+++.+|
T Consensus 7 ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 85 (113)
T d1nfdb1 7 SPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED 85 (113)
T ss_dssp ECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred cCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence 3445567789999999986433 357999974322 111 1111111000 001111234689999999999
Q ss_pred CeEEEEEEEcCC
Q psy8823 300 YGSYICRAANKL 311 (386)
Q Consensus 300 ~G~Y~C~a~n~~ 311 (386)
+|.|.|.+....
T Consensus 86 sa~YyCa~~~~~ 97 (113)
T d1nfdb1 86 SAMYFCASSLRW 97 (113)
T ss_dssp CEEECEEEESSS
T ss_pred ceeEEEEeecCC
Confidence 999999876443
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00017 Score=47.93 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=49.8
Q ss_pred cCCeeeeeccc--eeeecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEE
Q psy8823 23 RTPTISYISQE--QIKDIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTL 98 (386)
Q Consensus 23 ~~p~i~~~~~~--~~v~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 98 (386)
.+|.+.+.... .....+..++|.|.+.+. | ...|+|.+++........ .......++.|.. ...|
T Consensus 3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~----~~~~~~~~~~y~~-------~S~L 71 (104)
T d1o0va1 3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLS----TASTTQEGELAST-------QSEL 71 (104)
T ss_dssp CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGE----EEEEEEETTEEEE-------EEEE
T ss_pred CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCce----eeeEeCCCCeEEE-------EEEE
Confidence 35666654322 223456679999999863 3 346999998876532211 1111222333333 2267
Q ss_pred EEcccCCCCCeEEEEEeEEcc
Q psy8823 99 LVKDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 99 ~i~~~~~~d~G~Y~C~~~~~~ 119 (386)
.|..-.......|+|++.+..
T Consensus 72 ~v~~~~w~~~~~ytC~V~H~~ 92 (104)
T d1o0va1 72 TLSQKHWLSDRTYTCQVTYQG 92 (104)
T ss_dssp EEEHHHHHTTCCEEEEEEETT
T ss_pred EECHHHcCCCCEEEEEEEECC
Confidence 776655555678999999753
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.43 E-value=0.001 Score=43.81 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=46.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.|.+.+.+... +..|+..+|.|.+.+. +...|.|.+++...... .........++.|... ..|.|.
T Consensus 4 ~P~v~v~~~~p-~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~----~~~~~~~~~dgty~~~-------S~L~v~ 71 (103)
T d1hdma1 4 FPIAEVFTLKP-LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGF----GPTFVSAVDGLSFQAF-------SYLNFT 71 (103)
T ss_dssp CCEEEEEESSC-CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSC----CCEEEEEETTTEEEEE-------EEEEEC
T ss_pred CCeEEEECCCc-hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCc----EeceEEeCCCCcEEEE-------EEEEEe
Confidence 35565544332 4679999999999864 34569999988654211 1111111223333332 245554
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
.+|...|+|++.+..
T Consensus 72 ---~~~~~~ytC~V~H~~ 86 (103)
T d1hdma1 72 ---PEPSDIFSCIVTHEP 86 (103)
T ss_dssp ---CCTTCCEEEEEEETT
T ss_pred ---cCCCCEEEEEEEeCC
Confidence 445567999999764
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=9.9e-05 Score=49.52 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=49.7
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..|.+.+.++......++.++|.|.+.+. | ...|+|.+++............. ....++.|.. ...|.|
T Consensus 4 ~~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~--~~~~dgtys~-------~S~L~v 74 (107)
T d1c5cl2 4 AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE--QDSKDSTYSL-------SSTLTL 74 (107)
T ss_dssp BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECC--CCTTTCCEEE-------EEEEEE
T ss_pred cCCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEeccc--ccCCCCcEEE-------EEEEEE
Confidence 35667765443333346789999999864 3 45799999886553211100000 0001222332 226777
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
..-.......|+|++.+..
T Consensus 75 ~~~~W~~~~~ytC~V~H~~ 93 (107)
T d1c5cl2 75 SKADYEKHKVYACEVTHQG 93 (107)
T ss_dssp EHHHHTTCCEEEEEEECTT
T ss_pred CHHHhCCCCEEEEEEEECC
Confidence 6655455568999998754
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.43 E-value=0.00054 Score=45.13 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=47.9
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
.|.+.+.++...-..++.++|.|.+.+. ....|.|.+++.... .... .....++.|... ..|.|.
T Consensus 5 aP~V~~l~p~~~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~----~~~~--~~~~~~g~~s~~-------S~L~v~ 71 (101)
T d1kcvh2 5 APSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSG----VLTV--SAVLQSGLYTLS-------SNTTVA 71 (101)
T ss_dssp CCEEEEECCCSCCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTT----EEEC--CCEEETTEEEEE-------EEEEEE
T ss_pred CCEEEeECCCccccCCCeEEEEEEEEEEeCCCCEEEEecCCCccc----ceee--eeecCCCCEEEE-------EEEEEc
Confidence 4555554332223468899999999863 346799977664321 0011 112234444332 267776
Q ss_pred ccCCCCCeEEEEEeEEccc
Q psy8823 102 DIQETDAGYYRCQVIIGIN 120 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~~ 120 (386)
.-.. +.|.|+|.+.+...
T Consensus 72 ~~~w-~~~~ytC~V~H~~~ 89 (101)
T d1kcvh2 72 SGTW-PSASVTCLVAHPKS 89 (101)
T ss_dssp TTTT-TTSCCEEEEEEGGG
T ss_pred hhhc-CCCeEEEEEEeCCC
Confidence 5554 46789999987543
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.42 E-value=0.00045 Score=45.62 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=44.5
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.+.+.++...-..++.++|.|.+.+. ....|+|.+++.... ..... ....++.|... ..|.|
T Consensus 4 s~PsV~~l~p~~~~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~-----~~~~~-~~~~~g~ys~~-------S~L~v 70 (102)
T d1mjuh2 4 TAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG-----VHTFP-AVLQSDLYTLS-------SSVTV 70 (102)
T ss_dssp BCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTT-----EEECC-CEEETTEEEEE-------EEEEE
T ss_pred cCCEEEEECCCccccCCCcEEEEEEEeeeeCCCeEEEECcCCccCC-----eEecc-cccCCCCEEEE-------EEEEE
Confidence 34666543332223467899999999864 355799966553211 11111 12234444332 26777
Q ss_pred cccCCCCCeEEEEEeEEccc
Q psy8823 101 KDIQETDAGYYRCQVIIGIN 120 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~ 120 (386)
..-.. +.+.|+|++.+...
T Consensus 71 ~~~~w-~~~~ytC~V~H~~~ 89 (102)
T d1mjuh2 71 TSSTW-PSQSITCNVAHPAS 89 (102)
T ss_dssp CTTTT-TTSCCEEEEEEGGG
T ss_pred ehhHc-CCceEEEEEEECCC
Confidence 66655 45789999997543
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.41 E-value=0.00034 Score=45.67 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=42.3
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.+... ...|+.++|.|.+.+. ....|+|.+++........ ........++.|... ..|.
T Consensus 2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~---~~~~~~~~dgty~~~-------s~l~-- 68 (97)
T d1uvqb1 2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVV---STPLIRNGDWTFQIL-------VMLE-- 68 (97)
T ss_dssp CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEE---ECCCEECSSSCEEEE-------EEEE--
T ss_pred CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcE---eceeecCCCceEEEE-------EEec--
Confidence 46666654333 3457888999999864 3567999998865422111 111111122233321 1333
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
+..++...|+|++.+..
T Consensus 69 -v~~~~~~~ytC~V~H~s 85 (97)
T d1uvqb1 69 -MTPQRGDVYTCHVEHPS 85 (97)
T ss_dssp -CCSCTTCCEEEEEECTT
T ss_pred -cCCCCCCEEEEEEEeCC
Confidence 35666779999998653
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0004 Score=45.21 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=44.3
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.||.+.+.... ..++.++|.|.+.+. ....|+|.+++........ ........++.+.. ...|.+
T Consensus 2 ~PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~---~~~~~~~~~~~~~~-------~s~l~v 68 (95)
T d1k5na1 2 DPPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTE---LVETRPAGDRTFQK-------WAAVVV 68 (95)
T ss_dssp BCCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCE---ECCCEECSSSCEEE-------EEEEEE
T ss_pred cCCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCce---eccEEcCCCCeEEE-------EEEEEE
Confidence 35666664322 245689999999864 4456899999876532211 11111111222222 114444
Q ss_pred cccCCCCCeEEEEEeEEc
Q psy8823 101 KDIQETDAGYYRCQVIIG 118 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~ 118 (386)
...+...|+|++.+.
T Consensus 69 ---~~~~~~~ytC~V~H~ 83 (95)
T d1k5na1 69 ---PSGEEQRYTCHVQHE 83 (95)
T ss_dssp ---ETTCGGGEEEEEECT
T ss_pred ---EcCCCCEEEEEEEEC
Confidence 344556899999864
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00038 Score=42.86 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=44.5
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCc---eEEeeeEEEECCCCC-CCCeEEEEEEecCC
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGG---SIYRGSILKIPQITK-EDRGTYYCVAENGV 210 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~ 210 (386)
.|.+|+|+|.- .....+.|.+++..+..... .......|.+.+.+. +++|.|.|.+....
T Consensus 9 SGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~~ 72 (91)
T d1xiwa_ 9 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 72 (91)
T ss_dssp ETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTSC
T ss_pred eCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCCC
Confidence 59999999963 34567999999988765432 223445688888877 79999999996543
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=97.36 E-value=0.00064 Score=44.08 Aligned_cols=81 Identities=10% Similarity=0.183 Sum_probs=44.2
Q ss_pred CCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEEc
Q psy8823 24 TPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLVK 101 (386)
Q Consensus 24 ~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 101 (386)
+|.+.+.... ..++.++|.|.+.+. ....|+|.+++.......... .......++.|... ..|.+.
T Consensus 3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~--~~~~~~~~~ty~~~-------s~l~v~ 70 (94)
T d1hyrc1 3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQW--GDVLPDGNGTYQTW-------VATRIC 70 (94)
T ss_dssp CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEE--CCCEECSSSCEEEE-------EEEEEE
T ss_pred CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEc--CceEECCCCcEEEE-------EEEEEc
Confidence 4566654332 245679999999864 445799999987653221111 01111112222221 134443
Q ss_pred ccCCCCCeEEEEEeEEcc
Q psy8823 102 DIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 102 ~~~~~d~G~Y~C~~~~~~ 119 (386)
.+|...|+|++.+..
T Consensus 71 ---~~~~~~ytC~V~H~~ 85 (94)
T d1hyrc1 71 ---QGEEQRFTCYMEHSG 85 (94)
T ss_dssp ---TTCGGGEEEEEEETT
T ss_pred ---CCCCCEEEEEEEECC
Confidence 345557999998753
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.36 E-value=0.00071 Score=43.31 Aligned_cols=59 Identities=15% Similarity=0.317 Sum_probs=39.5
Q ss_pred CCccEEEEEEeeeeCCC--eEEEEEcCeeeCCCCc----------eEEeeeEEEECCCCCCCCeEEEEEEecCC
Q psy8823 149 EGQPVQLECFAGGHPTP--RISWRRENNAILPTGG----------SIYRGSILKIPQITKEDRGTYYCVAENGV 210 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~----------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 210 (386)
.++.++|.|.+.|+.+. .++|.++|..+..... .....+.|.+..- +...|+|.+.+..
T Consensus 14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~~ 84 (89)
T d2mhaa1 14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQG 84 (89)
T ss_dssp CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECSS
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEECC
Confidence 45689999999886543 6899999987653321 1122345666543 3347999998864
|
| >d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.34 E-value=0.0018 Score=42.64 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=47.9
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC-CC--CcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA-QD--YPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLL 99 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 99 (386)
..|.+...... ....++.++|.|.+.+. |. ..+.|.+++...... ........++.|... ..|.
T Consensus 4 ~~PsV~pl~~~-~~~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~-----~~~~~~~~~gtys~~-------S~L~ 70 (102)
T d2fbjh2 4 RNPTIYPLTLP-PALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTV-----NFPPALASGGRYTMS-------NQLT 70 (102)
T ss_dssp BCCEEEEECCC-SSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEE-----ECCCEECSSSCEEEE-------EEEE
T ss_pred CCCEEeeeCCC-cccCCCcEEEEEEEEcccCCCcEEEEEccCCCcCcee-----EeeeEecCCCCEEEE-------EEEE
Confidence 34555433221 13457889999999974 43 346777766544211 011112223334332 2677
Q ss_pred EcccCCCCCeEEEEEeEEccc
Q psy8823 100 VKDIQETDAGYYRCQVIIGIN 120 (386)
Q Consensus 100 i~~~~~~d~G~Y~C~~~~~~~ 120 (386)
|..........|+|++.+...
T Consensus 71 v~~~~W~~~~~ytC~V~H~s~ 91 (102)
T d2fbjh2 71 LPAVECPEGESVKCSVQHDSN 91 (102)
T ss_dssp ECGGGSCTTCEEEEEEEETTS
T ss_pred EeHHHccCCCEEEEEEEECCC
Confidence 777766666689999987543
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.28 E-value=0.00019 Score=45.63 Aligned_cols=63 Identities=13% Similarity=0.211 Sum_probs=37.9
Q ss_pred CcEEEEEEEEecCCC--eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 241 YDMDLECHVEAYPPP--AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 241 ~~~~l~C~~~g~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
+.++|.|.+.|+.+. .+.|.++|.. ......... ..++ ....+.+..+. .+..|+|.+.+...
T Consensus 14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~--~~~~~~~~~--~~~g---tys~~s~~~~~--~~~~yTC~V~H~~~ 78 (86)
T d1hxma2 14 NGTNVACLVKEFYPKDIRINLVSSKKI--TEFDPAIVI--SPSG---KYNAVKLGKYE--DSNSVTCSVQHDNK 78 (86)
T ss_dssp ETTEEEEEEESCBSSCCEEEEECSSEE--EECCCEEEE--CTTS---SEEEEEEEEET--TTTTCEEEEEETTE
T ss_pred CCCEEEEEEeeEECCCCEEEEEECCEE--ccCcEEeee--ccCC---cEEEEEEEecC--CCCEEEEEEEECCc
Confidence 457899999996544 7899999876 333322211 1111 22333444443 34469999998753
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.27 E-value=4.8e-05 Score=50.81 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=49.8
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC-C-CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA-Q-DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
.+|.+.+.++...-..++.++|.|.+.+. | ...|.|++++..+...... .. ....++.|... ..|.|
T Consensus 4 ~~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~---~~-~~~~~~tys~~-------S~l~v 72 (104)
T d1nfde2 4 SSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKT---TK-PSKQGQNYMTS-------SYLSL 72 (104)
T ss_dssp BCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC---CC-CBCSSSCEEEE-------EBCCE
T ss_pred cCCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEe---cc-ccCCCceEEEE-------EEEEE
Confidence 35666665433222246779999999864 3 4579999988765322111 11 11123333332 24566
Q ss_pred cccCCCCCeEEEEEeEEcc
Q psy8823 101 KDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~ 119 (386)
..-...+...|+|++.+..
T Consensus 73 ~~~~w~~~~~ytC~V~H~~ 91 (104)
T d1nfde2 73 TADQWKSHNRVSCQVTHEG 91 (104)
T ss_dssp EHHHHHTCSCEEEEEECTT
T ss_pred cHHHcCCCCEEEEEEEECC
Confidence 5555556678999998754
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.24 E-value=0.00015 Score=48.29 Aligned_cols=66 Identities=18% Similarity=0.465 Sum_probs=43.7
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEc--Ceee------CCCC-c----------eEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRE--NNAI------LPTG-G----------SIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~------~~~~-~----------~~~------~~~~l~i~~~~~ 196 (386)
...+++|++++|.|.+.|.. .-.+.|++. |+.+ .... . ... +...|.|.+++.
T Consensus 9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~ 88 (117)
T d1iqdb1 9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS 88 (117)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence 34578899999999998753 235788873 2211 1111 0 011 123599999999
Q ss_pred CCCeEEEEEEecC
Q psy8823 197 EDRGTYYCVAENG 209 (386)
Q Consensus 197 ~d~g~y~C~~~~~ 209 (386)
+|++.|.|.....
T Consensus 89 eDtAvYYCA~~~~ 101 (117)
T d1iqdb1 89 DDTAVYYCAVPDP 101 (117)
T ss_dssp GGCEEEEEEECSS
T ss_pred CcceEEEEeEcCC
Confidence 9999999987653
|
| >d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=1.3e-05 Score=53.43 Aligned_cols=75 Identities=9% Similarity=0.143 Sum_probs=45.9
Q ss_pred cccCCCcEEEEEEEEec--CCC-eeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 236 GQALQYDMDLECHVEAY--PPP-AIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~--p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
....++.++|.|.+.|+ |.. .|+|.+++......... ....++.+...+.|.|..-..+.+-.|+|.|.+...
T Consensus 14 ~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~----~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~~ 89 (101)
T d1ow0a1 14 DLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPP----ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES 89 (101)
T ss_dssp HHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCC----CCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSC
T ss_pred HHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecce----EECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCCC
Confidence 34567899999999885 333 79999887642221111 111122223345565655555567789999998764
Q ss_pred ce
Q psy8823 313 TS 314 (386)
Q Consensus 313 ~~ 314 (386)
..
T Consensus 90 ~~ 91 (101)
T d1ow0a1 90 KT 91 (101)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.20 E-value=0.00016 Score=48.13 Aligned_cols=63 Identities=21% Similarity=0.483 Sum_probs=41.6
Q ss_pred eEEEeCCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCCC-c---------eE-E------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPT--PRISWRREN--NA------ILPTG-G---------SI-Y------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~~-~---------~~-~------~~~~l~i~~~~~ 196 (386)
...+++|++++|.|.+.|... ..+.|++.. +. +.... . +. . +...|.|.+++.
T Consensus 9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~ 88 (118)
T d1nlbh1 9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN 88 (118)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence 345789999999999987542 358888742 11 11111 1 11 1 123589999999
Q ss_pred CCCeEEEEEE
Q psy8823 197 EDRGTYYCVA 206 (386)
Q Consensus 197 ~d~g~y~C~~ 206 (386)
+|++.|.|.-
T Consensus 89 eDtAvYYCAr 98 (118)
T d1nlbh1 89 EDTATYFCAR 98 (118)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEee
Confidence 9999999953
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.20 E-value=0.00013 Score=48.61 Aligned_cols=64 Identities=20% Similarity=0.447 Sum_probs=42.2
Q ss_pred ceEEEeCCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCCC-c---------e-EE-e-----eeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPT--PRISWRREN--NA------ILPTG-G---------S-IY-R-----GSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~~-~---------~-~~-~-----~~~l~i~~~~ 195 (386)
....+++|++++|.|.+.|... -.+.|++.. +. +.... . + .. . ...|.|.+++
T Consensus 8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~ 87 (118)
T d2jelh1 8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence 3456889999999999987543 358888732 11 11110 1 1 01 1 2358999999
Q ss_pred CCCCeEEEEEE
Q psy8823 196 KEDRGTYYCVA 206 (386)
Q Consensus 196 ~~d~g~y~C~~ 206 (386)
.+|++.|.|.-
T Consensus 88 ~eDTAvYYCAr 98 (118)
T d2jelh1 88 SEDSAIYYCAR 98 (118)
T ss_dssp GGGCEEEEEEE
T ss_pred cCcceeeeEEE
Confidence 99999999954
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.19 E-value=0.00018 Score=47.68 Aligned_cols=66 Identities=24% Similarity=0.538 Sum_probs=43.6
Q ss_pred CceEEEeCCccEEEEEEeeeeCC--CeEEEEEc--Cee------eCCCC-----------ceEE-e-----eeEEEECCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPT--PRISWRRE--NNA------ILPTG-----------GSIY-R-----GSILKIPQI 194 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~------~~~~~-----------~~~~-~-----~~~l~i~~~ 194 (386)
+....+++|++++|.|.+.|... ..+.|++. |+. +.... +... . ...|.+.++
T Consensus 7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL 86 (116)
T d1mjuh1 7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL 86 (116)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence 44567889999999999987543 35788873 211 11111 1111 1 236889999
Q ss_pred CCCCCeEEEEEEe
Q psy8823 195 TKEDRGTYYCVAE 207 (386)
Q Consensus 195 ~~~d~g~y~C~~~ 207 (386)
+.+|++.|.|.-.
T Consensus 87 ~~eDtAvYYCAr~ 99 (116)
T d1mjuh1 87 TSDDSAVYYCANK 99 (116)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CCCCceEEEEccc
Confidence 9999999999643
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.19 E-value=0.00019 Score=48.42 Aligned_cols=63 Identities=22% Similarity=0.491 Sum_probs=41.2
Q ss_pred EEeCCccEEEEEEeeeeC----CCeEEEEEc--CeeeC------CC---------CceE-E------eeeEEEECCCCCC
Q psy8823 146 VVSEGQPVQLECFAGGHP----TPRISWRRE--NNAIL------PT---------GGSI-Y------RGSILKIPQITKE 197 (386)
Q Consensus 146 ~~~~g~~v~l~C~~~~~~----~~~v~W~~~--~~~~~------~~---------~~~~-~------~~~~l~i~~~~~~ 197 (386)
.+++|++++|.|.+.|.. ...+.|++. ++.+. .. ..+. . ....|.|.+++.+
T Consensus 11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e 90 (120)
T d2agjh1 11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV 90 (120)
T ss_dssp BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence 467899999999987643 235889974 21110 00 0111 1 1246999999999
Q ss_pred CCeEEEEEEec
Q psy8823 198 DRGTYYCVAEN 208 (386)
Q Consensus 198 d~g~y~C~~~~ 208 (386)
|++.|.|....
T Consensus 91 DsAvYyCAr~~ 101 (120)
T d2agjh1 91 DTATYYCARTS 101 (120)
T ss_dssp GCEEEEEEEEC
T ss_pred cceEEeeEecC
Confidence 99999997543
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.18 E-value=0.00019 Score=47.95 Aligned_cols=66 Identities=24% Similarity=0.539 Sum_probs=43.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCCC----------ceE-E-e-----eeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPT--PRISWRREN--NA------ILPTG----------GSI-Y-R-----GSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~~----------~~~-~-~-----~~~l~i~~~~ 195 (386)
....+++|++++|.|.+.|... -.+.|++.. +. +.... .+. . . ...|.|.+++
T Consensus 7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~ 86 (117)
T d1um5h1 7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT 86 (117)
T ss_dssp CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence 3456889999999999987543 358898742 11 11111 011 1 1 2359999999
Q ss_pred CCCCeEEEEEEec
Q psy8823 196 KEDRGTYYCVAEN 208 (386)
Q Consensus 196 ~~d~g~y~C~~~~ 208 (386)
.+|++.|.|....
T Consensus 87 ~eDtAvYYCAr~~ 99 (117)
T d1um5h1 87 SEDSAVYYCARSS 99 (117)
T ss_dssp GGGCEEEEEEEEE
T ss_pred CCcceEEEEeecc
Confidence 9999999997543
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.0015 Score=44.42 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.2
Q ss_pred eeEEEEeecccCCCeEEEEEEEc
Q psy8823 287 DTTIRVITIEKRQYGSYICRAAN 309 (386)
Q Consensus 287 ~~~L~i~~~~~~d~G~Y~C~a~n 309 (386)
...|+|.+++.+|+|.|.|.+..
T Consensus 76 ~~~L~I~~l~~~DsavYyCa~~~ 98 (118)
T d1yjdc1 76 SVTFYLQNLYVNQTDIYFCKIEV 98 (118)
T ss_dssp EEEEEEESCCGGGCEEEEEEEEE
T ss_pred eEEEEECCCCcccCeEEEEEEec
Confidence 45799999999999999998754
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.16 E-value=0.0015 Score=43.60 Aligned_cols=71 Identities=11% Similarity=0.332 Sum_probs=43.5
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeCC--ee-ee---eecC----------ceeEEeeeeecCceeeeEEEEeecccC
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKED--TQ-QV---LTNN----------QHYSISHFATADEFTDTTIRVITIEKR 298 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~--~~-~~---~~~~----------~~~~~~~~~~~~~~~~~~L~i~~~~~~ 298 (386)
+..|+++.|+|.+.|+.-. .+.|++.- +. .. +... .++.+.. ........|.|++++.+
T Consensus 11 vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~---D~s~~~~~L~i~~L~~e 87 (119)
T d1kxvc_ 11 VPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQ---GNAKNTAYLQMDSLKPD 87 (119)
T ss_dssp ECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEE---CSSTTEEEEEECSCCGG
T ss_pred ECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEec---ccCCcceecccccCCcC
Confidence 4568999999999887544 57887642 11 00 1111 1111111 11123457999999999
Q ss_pred CCeEEEEEEEcC
Q psy8823 299 QYGSYICRAANK 310 (386)
Q Consensus 299 d~G~Y~C~a~n~ 310 (386)
|.+.|.|.....
T Consensus 88 DtA~YYCAr~~~ 99 (119)
T d1kxvc_ 88 DTAMYYCKPSLR 99 (119)
T ss_dssp GCEEEEEEEEES
T ss_pred CcceEeeeeccc
Confidence 999999976543
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.15 E-value=0.00015 Score=48.25 Aligned_cols=65 Identities=25% Similarity=0.523 Sum_probs=43.2
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--ee------eCCCC-c---------e-EE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRREN--NA------ILPTG-G---------S-IY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~------~~~~~-~---------~-~~------~~~~l~i~~~~~ 196 (386)
...+++|++++|.|.+.|.. .-.+.|++.. +. +.... . + .. +...|.+.+++.
T Consensus 9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~ 88 (117)
T d1jpth1 9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA 88 (117)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence 34688999999999998754 3358888742 11 11111 1 0 11 123589999999
Q ss_pred CCCeEEEEEEec
Q psy8823 197 EDRGTYYCVAEN 208 (386)
Q Consensus 197 ~d~g~y~C~~~~ 208 (386)
+|++.|.|....
T Consensus 89 eDTAvYYCAr~~ 100 (117)
T d1jpth1 89 EDTAVYYCARDT 100 (117)
T ss_dssp GGCEEEEEEEEC
T ss_pred CCceEEEEeecC
Confidence 999999996543
|
| >d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.00041 Score=42.70 Aligned_cols=62 Identities=18% Similarity=0.360 Sum_probs=41.2
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc-CCCeEEEEEEEcC
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK-RQYGSYICRAANK 310 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~ 310 (386)
.|.+|+|+|.. .....+.|.+++............ ......|.+.+.+. +++|.|.|.+...
T Consensus 9 SGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~--------~~~~~~l~L~dfSe~e~sGyY~C~~~~~ 71 (91)
T d1xiwa_ 9 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNI--------GSDEDHLSLKEFSELEQSGYYVCYPRGS 71 (91)
T ss_dssp ETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTE--------EEETTEEEETTCCHHHHCEEEEEEETTS
T ss_pred eCCEEEEECCC--CCCCceeeeeccccccCCCccccc--------ccccceEEecccCccccCceEEEEcCCC
Confidence 48899999963 344679999999873322111110 01345688888766 7999999998543
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.14 E-value=0.00021 Score=47.90 Aligned_cols=62 Identities=23% Similarity=0.366 Sum_probs=41.5
Q ss_pred EEEeCCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCC---------Cc-eEE-e-----eeEEEECCCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGHPT--PRISWRREN--NA------ILPT---------GG-SIY-R-----GSILKIPQITKED 198 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~---------~~-~~~-~-----~~~l~i~~~~~~d 198 (386)
..+++|++++|.|.+.|... -.+.|++.. +. +... .. ... . ...|.|.+++.+|
T Consensus 10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD 89 (120)
T d1dn0b1 10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD 89 (120)
T ss_dssp CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence 35788999999999988653 358888742 11 1111 11 111 1 2359999999999
Q ss_pred CeEEEEEE
Q psy8823 199 RGTYYCVA 206 (386)
Q Consensus 199 ~g~y~C~~ 206 (386)
++.|.|..
T Consensus 90 tA~YYCAr 97 (120)
T d1dn0b1 90 TAVYYCAR 97 (120)
T ss_dssp CEEEEEEE
T ss_pred ccEEEEEe
Confidence 99999954
|
| >d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunomodulatory protein m144, alpha-3 domain species: Murine cytomegalovirus [TaxId: 10366]
Probab=97.14 E-value=0.00092 Score=43.60 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=40.0
Q ss_pred CCcEEEEEEEeeC--CCCcEEEEecCCcccccccccc-CCceeEEeccceeeecCCCcceEEEEEcccCCCCCeEEEEEe
Q psy8823 39 GGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPIS-TGSSLIIRDSRFAIRYDTASSTYTLLVKDIQETDAGYYRCQV 115 (386)
Q Consensus 39 G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 115 (386)
...++|.|.+.+. ....|+|.+++........... ........++.|... ..|.| ...+...|+|.+
T Consensus 14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~-------s~l~v---~~~~~~~ytC~V 83 (98)
T d1u58a1 14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKH-------IDVYV---DGGLEHVYSCRV 83 (98)
T ss_dssp SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEE-------EEEEE---CTTCGGGEEEEE
T ss_pred CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEE-------EEEEE---CCCCCCEEEEEE
Confidence 4579999999864 3456999999876532211111 111112223333332 24555 445556899999
Q ss_pred EEcc
Q psy8823 116 IIGI 119 (386)
Q Consensus 116 ~~~~ 119 (386)
.+..
T Consensus 84 ~H~s 87 (98)
T d1u58a1 84 KGIA 87 (98)
T ss_dssp EEGG
T ss_pred EeCC
Confidence 8643
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.12 E-value=0.00029 Score=46.89 Aligned_cols=64 Identities=23% Similarity=0.513 Sum_probs=42.6
Q ss_pred EEEeCCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCCC---------ce-EE------eeeEEEECCCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGHPT--PRISWRREN--NA------ILPTG---------GS-IY------RGSILKIPQITKED 198 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~~---------~~-~~------~~~~l~i~~~~~~d 198 (386)
..+++|++++|.|.+.|... ..+.|++.. +. +.... .+ .. +...|.|.+++.+|
T Consensus 10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD 89 (116)
T d1a2yb_ 10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD 89 (116)
T ss_dssp SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence 35788999999999987643 358888742 11 11111 11 11 12359999999999
Q ss_pred CeEEEEEEec
Q psy8823 199 RGTYYCVAEN 208 (386)
Q Consensus 199 ~g~y~C~~~~ 208 (386)
++.|.|.-..
T Consensus 90 TAvYYCAr~~ 99 (116)
T d1a2yb_ 90 TARYYCARER 99 (116)
T ss_dssp CEEEEEEEES
T ss_pred ceEEEEEEeC
Confidence 9999997543
|
| >d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.0011 Score=43.79 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=46.1
Q ss_pred cCCeeeeeccceeeecCCcEEEEEEEeeC--CCCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceEEEEE
Q psy8823 23 RTPTISYISQEQIKDIGGTVELKCSVQYA--QDYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTYTLLV 100 (386)
Q Consensus 23 ~~p~i~~~~~~~~v~~G~~v~L~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 100 (386)
..|.+.+.++...-..++.++|.|.+.+. ....|+|.+++.... ..........++.|... ..|.|
T Consensus 4 ~~PsV~~l~ps~~~~~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~-----~~t~~~~~~~~gtys~~-------S~L~v 71 (103)
T d1c5ch2 4 KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG-----VHTFPAVLQSSGLYSLS-------SVVTV 71 (103)
T ss_dssp BCCEEEEECCCGGGEETTEEEEEEEEEEEBSSCCEEEEGGGTBCTT-----EEECCCEECTTSCEEEE-------EEEEE
T ss_pred cCCEEEEECCCchhcCCCeEEEEEEEEeEeCCCeEEEECcCCCCCC-----EEECCCeECCCCCEEEE-------EEEEE
Confidence 34566554332222357789999999864 345699976654321 11111112223333332 25666
Q ss_pred cccCCCCCeEEEEEeEEccc
Q psy8823 101 KDIQETDAGYYRCQVIIGIN 120 (386)
Q Consensus 101 ~~~~~~d~G~Y~C~~~~~~~ 120 (386)
..-.. ....|+|++.+...
T Consensus 72 ~~~~w-~~~~ytC~V~H~~~ 90 (103)
T d1c5ch2 72 PSSSL-GTQTYICNVNHKPS 90 (103)
T ss_dssp EGGGG-GTCCCEEEEEEGGG
T ss_pred Ccccc-CCCeEEEEEEeCCC
Confidence 65444 34579999997543
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.11 E-value=0.00016 Score=48.27 Aligned_cols=62 Identities=26% Similarity=0.603 Sum_probs=41.1
Q ss_pred EEEeCCccEEEEEEeeeeC--CCeEEEEEc--Ceee------CCCC-c---------e-EE------eeeEEEECCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGHP--TPRISWRRE--NNAI------LPTG-G---------S-IY------RGSILKIPQITKE 197 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~------~~~~-~---------~-~~------~~~~l~i~~~~~~ 197 (386)
..+++|++++|.|.+.|.. ...+.|++. |+.+ .... . + .. +...|.|.+++.+
T Consensus 10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e 89 (115)
T d1f3dh1 10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE 89 (115)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence 4578899999999998753 335888873 2211 1111 0 1 11 1235999999999
Q ss_pred CCeEEEEEE
Q psy8823 198 DRGTYYCVA 206 (386)
Q Consensus 198 d~g~y~C~~ 206 (386)
|++.|.|..
T Consensus 90 DtAvYYCAr 98 (115)
T d1f3dh1 90 DSAVYYCAN 98 (115)
T ss_dssp GCEEEEEEE
T ss_pred CcEEEEEec
Confidence 999999964
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.10 E-value=0.00018 Score=47.98 Aligned_cols=64 Identities=22% Similarity=0.554 Sum_probs=41.7
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEc--Ceee------CCCC-----------ceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRRE--NNAI------LPTG-----------GSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~------~~~~-----------~~~~------~~~~l~i~~~~ 195 (386)
....+++|++++|.|.+.|.. ...+.|++. |+.+ .... +... +...|.|.+++
T Consensus 8 g~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~ 87 (117)
T d1mfah1 8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLT 87 (117)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccC
Confidence 345678999999999998753 235778763 2211 1000 1111 12358999999
Q ss_pred CCCCeEEEEEE
Q psy8823 196 KEDRGTYYCVA 206 (386)
Q Consensus 196 ~~d~g~y~C~~ 206 (386)
.+|++.|.|.-
T Consensus 88 ~eDtAvYYCAr 98 (117)
T d1mfah1 88 SEDSAVYYCTR 98 (117)
T ss_dssp GGGCEEEEEEE
T ss_pred CCcceEEEEec
Confidence 99999999964
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.10 E-value=0.00016 Score=47.48 Aligned_cols=64 Identities=25% Similarity=0.485 Sum_probs=42.3
Q ss_pred eEEEeCCccEEEEEEeeeeCC--CeEEEEEc--Cee------eCCC------------Cce-EEe------eeEEEECCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPT--PRISWRRE--NNA------ILPT------------GGS-IYR------GSILKIPQI 194 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~------~~~~------------~~~-~~~------~~~l~i~~~ 194 (386)
...+++|++++|.|.+.|... ..+.|++. |+. +... ..+ ... ...|.|.++
T Consensus 9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL 88 (109)
T d2ck0h1 9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL 88 (109)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence 456889999999999987543 35888873 211 1110 011 111 235899999
Q ss_pred CCCCCeEEEEEEe
Q psy8823 195 TKEDRGTYYCVAE 207 (386)
Q Consensus 195 ~~~d~g~y~C~~~ 207 (386)
+.+|++.|.|.-.
T Consensus 89 ~~eDTAvYYCAr~ 101 (109)
T d2ck0h1 89 KTEDTGIYYCVRG 101 (109)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CHhHCEEEEEEEc
Confidence 9999999999754
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.09 E-value=0.00026 Score=47.22 Aligned_cols=66 Identities=26% Similarity=0.618 Sum_probs=42.9
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEc--Cee------eCC-CCc----------eEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRRE--NNA------ILP-TGG----------SIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~------~~~-~~~----------~~~------~~~~l~i~~~~ 195 (386)
....+++|++++|.|.+.|.. .-.+.|++. |+. +.. ... ... +...|.|.+++
T Consensus 8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~ 87 (118)
T d1ct8b1 8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT 87 (118)
T ss_dssp CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence 345688999999999998754 235788763 221 111 100 000 12368999999
Q ss_pred CCCCeEEEEEEec
Q psy8823 196 KEDRGTYYCVAEN 208 (386)
Q Consensus 196 ~~d~g~y~C~~~~ 208 (386)
.+|++.|.|.-..
T Consensus 88 ~eDtAvYYCAr~~ 100 (118)
T d1ct8b1 88 TEDSAIYYCARYR 100 (118)
T ss_dssp GGGCEEEEEEEEC
T ss_pred CCcceEEEEeeec
Confidence 9999999996543
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.08 E-value=0.00045 Score=46.26 Aligned_cols=64 Identities=28% Similarity=0.544 Sum_probs=42.4
Q ss_pred eEEEeCCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCC-Cc---------eE-E------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPT--PRISWRREN--NA------ILPT-GG---------SI-Y------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~-~~---------~~-~------~~~~l~i~~~~~ 196 (386)
...+++|++++|.|.+.|... ..+.|++.. +. +... .. +. . +...|.|.+++.
T Consensus 9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~ 88 (121)
T d2p49b1 9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKP 88 (121)
T ss_dssp CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccc
Confidence 345789999999999987543 357888742 11 1110 00 11 1 123589999999
Q ss_pred CCCeEEEEEEe
Q psy8823 197 EDRGTYYCVAE 207 (386)
Q Consensus 197 ~d~g~y~C~~~ 207 (386)
+|++.|.|...
T Consensus 89 eDtAvYYCAr~ 99 (121)
T d2p49b1 89 EDTATYYCAAG 99 (121)
T ss_dssp GGCEEEEEEES
T ss_pred cceeEEeeecc
Confidence 99999999864
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.08 E-value=0.00019 Score=48.29 Aligned_cols=65 Identities=22% Similarity=0.549 Sum_probs=42.8
Q ss_pred eEEEeCCccEEEEEEeeeeC--CCeEEEEEc--Ceee------CCCC-----------ceEE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHP--TPRISWRRE--NNAI------LPTG-----------GSIY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~------~~~~-----------~~~~------~~~~l~i~~~~~ 196 (386)
...+++|++++|.|.+.|.. ...+.|++. |+.+ .... +... +...|.|.+++.
T Consensus 9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~ 88 (120)
T d1pg7x1 9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS 88 (120)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence 34578999999999997654 335888873 2211 1111 1111 123599999999
Q ss_pred CCCeEEEEEEec
Q psy8823 197 EDRGTYYCVAEN 208 (386)
Q Consensus 197 ~d~g~y~C~~~~ 208 (386)
+|++.|.|....
T Consensus 89 eDtA~YYCAr~~ 100 (120)
T d1pg7x1 89 NDSAVYYCARED 100 (120)
T ss_dssp GGCEEEEEEEEC
T ss_pred CcceEEEeeecC
Confidence 999999998643
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.07 E-value=0.00068 Score=44.24 Aligned_cols=61 Identities=25% Similarity=0.474 Sum_probs=36.4
Q ss_pred CCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCC----------CceE-------EeeeEEEECCCCCCCCeE
Q psy8823 149 EGQPVQLECFAGGHPT--PRISWRREN--NA------ILPT----------GGSI-------YRGSILKIPQITKEDRGT 201 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~----------~~~~-------~~~~~l~i~~~~~~d~g~ 201 (386)
+|++++|.|.+.|... -.+.|++.. +. +... ..+. .+...|.|.+++.+|++.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 4899999999987543 358888732 11 1111 0111 112369999999999999
Q ss_pred EEEEEecC
Q psy8823 202 YYCVAENG 209 (386)
Q Consensus 202 y~C~~~~~ 209 (386)
|.|.....
T Consensus 81 YYCAr~~~ 88 (103)
T d1oari_ 81 YYCARMWY 88 (103)
T ss_dssp EEEEEEEC
T ss_pred EEeEEECC
Confidence 99976543
|
| >d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.06 E-value=0.00045 Score=43.10 Aligned_cols=52 Identities=17% Similarity=0.470 Sum_probs=37.5
Q ss_pred CCCcEEEEEEEEecCCCeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeeccc-CCCeEEEEEEE
Q psy8823 239 LQYDMDLECHVEAYPPPAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEK-RQYGSYICRAA 308 (386)
Q Consensus 239 ~g~~~~l~C~~~g~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~ 308 (386)
.|.+|+|+|...+. -.+.|.+++.. +... .+..|.+.+.+. +++|.|.|...
T Consensus 13 SGTtV~LTCP~~~~--~~I~Wkkn~~~--i~g~--------------~~~~L~L~~FSE~e~SGyY~C~~~ 65 (100)
T d1jbja2 13 SGTSVELTCPLDSD--ENLKWEKNGQE--LPQK--------------HDKHLVLQDFSEVEDSGYYVCYTP 65 (100)
T ss_dssp ETTEEEEECSSCCC--TTCEEEETTEE--ECSC--------------CCSEEEEESCCTTTSCEEEEEECS
T ss_pred eCCEEEEECCCCCC--CceEEeecccc--CCCC--------------CCcEEEEccccccccCcceEEecC
Confidence 48899999986543 46999999877 3322 233577777654 89999999644
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.06 E-value=0.00065 Score=45.99 Aligned_cols=66 Identities=26% Similarity=0.496 Sum_probs=43.0
Q ss_pred ceEEEeCCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCC-C----------ceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPT--PRISWRREN--NA------ILPT-G----------GSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~-~----------~~~~------~~~~l~i~~~~ 195 (386)
....+++|++++|.|.+.|... -.+.|++.. +. +... . +... ....|.|.+++
T Consensus 7 G~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~ 86 (126)
T d1rjca1 7 GGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLK 86 (126)
T ss_dssp CCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccC
Confidence 3456889999999999987543 357888732 11 1111 0 1111 12359999999
Q ss_pred CCCCeEEEEEEec
Q psy8823 196 KEDRGTYYCVAEN 208 (386)
Q Consensus 196 ~~d~g~y~C~~~~ 208 (386)
.+|++.|.|....
T Consensus 87 ~eDTAvYYCAr~~ 99 (126)
T d1rjca1 87 PEDTAMYYCAADT 99 (126)
T ss_dssp GGGCEEEEEEECC
T ss_pred cccCceeEEEeec
Confidence 9999999997653
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.05 E-value=0.00025 Score=47.43 Aligned_cols=64 Identities=23% Similarity=0.540 Sum_probs=42.4
Q ss_pred eEEEeCCccEEEEEEeeeeCC--CeEEEEEc--Cee------eCCCC-c---------e-EE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPT--PRISWRRE--NNA------ILPTG-G---------S-IY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~------~~~~~-~---------~-~~------~~~~l~i~~~~~ 196 (386)
...+++|++++|.|.+.|... ..+.|++. |+. +.... . + .. +...|.|.+++.
T Consensus 9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~ 88 (119)
T d1eapb1 9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS 88 (119)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence 445789999999999987642 35888874 211 11111 0 0 01 123699999999
Q ss_pred CCCeEEEEEEe
Q psy8823 197 EDRGTYYCVAE 207 (386)
Q Consensus 197 ~d~g~y~C~~~ 207 (386)
+|++.|.|...
T Consensus 89 eDTAvYYCAr~ 99 (119)
T d1eapb1 89 EDSAVYFCKRS 99 (119)
T ss_dssp GGCEEEEEEEC
T ss_pred CcceEEEEEEe
Confidence 99999999643
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.02 E-value=0.0032 Score=42.15 Aligned_cols=72 Identities=10% Similarity=0.299 Sum_probs=43.3
Q ss_pred cccCCCcEEEEEEEEecCCC--eeEEEeCC--eee-e---ee-cC----------ceeEEeeeeecCceeeeEEEEeecc
Q psy8823 236 GQALQYDMDLECHVEAYPPP--AIVWIKED--TQQ-V---LT-NN----------QHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~--~~~W~~~~--~~~-~---~~-~~----------~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.+..|+++.|.|.+.|..-. .+.|.+-. +.. . +. .. .++.+.. ........|.|++++
T Consensus 11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~---D~s~nt~~L~i~~L~ 87 (123)
T d1mqkh_ 11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISR---DNAKNTLYLQMSSLK 87 (123)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEE---EGGGTEEEEEECSCC
T ss_pred eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEe---cCcccccccceeeec
Confidence 34569999999999886433 57887632 110 0 11 11 1111111 011234569999999
Q ss_pred cCCCeEEEEEEEcC
Q psy8823 297 KRQYGSYICRAANK 310 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~ 310 (386)
.+|.+.|.|.....
T Consensus 88 ~eDtAvYYCAr~~~ 101 (123)
T d1mqkh_ 88 SEDTAMYYCVRHEY 101 (123)
T ss_dssp GGGCEEEEEEEEET
T ss_pred cCcccceeEEecCC
Confidence 99999999976543
|
| >d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.02 E-value=0.0005 Score=45.54 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=42.4
Q ss_pred CCccEEEEEEeeeeCC----CeEEEEEcCeeeCCCC---------ceEEeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 149 EGQPVQLECFAGGHPT----PRISWRRENNAILPTG---------GSIYRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
.+..++|.|.+.+..+ ..++|.++|....... +.....+.|.|..-.......|+|.+.+...
T Consensus 15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l 90 (103)
T d1i1ca1 15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF 90 (103)
T ss_dssp SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCC
Confidence 4667899999987533 4789999998764331 1222345666666555555689999998653
|
| >d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.01 E-value=0.00065 Score=46.30 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=51.1
Q ss_pred cCCeeeeeccce--eeecCCcEEEEEEEeeC-C---CCcEEEEecCCccccccccccCCceeEEeccceeeecCCCcceE
Q psy8823 23 RTPTISYISQEQ--IKDIGGTVELKCSVQYA-Q---DYPVIWMKVDRNKVTEPLPISTGSSLIIRDSRFAIRYDTASSTY 96 (386)
Q Consensus 23 ~~p~i~~~~~~~--~v~~G~~v~L~C~~~~~-~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (386)
..|.+.+.++.. ....++.++|.|.+.+. | ...++|++++....... ........++.|... .
T Consensus 14 ~~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~----~~~~~~~~~gt~s~~-------S 82 (119)
T d1igtb3 14 GGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ----TQTHREDYNSTLRVV-------S 82 (119)
T ss_dssp CCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTT----CBCCEEECSSSEEEE-------E
T ss_pred cCCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCE----ECccEECCCCcEEEE-------E
Confidence 345666654432 24568899999999863 3 35689999887653221 111122233444432 2
Q ss_pred EEEEcccCCCCCeEEEEEeEEcc
Q psy8823 97 TLLVKDIQETDAGYYRCQVIIGI 119 (386)
Q Consensus 97 ~L~i~~~~~~d~G~Y~C~~~~~~ 119 (386)
.|.|..-.......|+|.+.+..
T Consensus 83 ~L~v~~~eW~~g~~ytC~V~H~~ 105 (119)
T d1igtb3 83 ALPIQHQDWMSGKEFKCKVNNKD 105 (119)
T ss_dssp EEECCHHHHHTTCEEEEEEECTT
T ss_pred EEEEeHHHhCCCCeEEEEEEECC
Confidence 66665555455568999998653
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.01 E-value=0.0022 Score=42.59 Aligned_cols=73 Identities=10% Similarity=0.163 Sum_probs=44.4
Q ss_pred cccCCCcEEEEEEEEecCCC--eeEEEeC--Ceee-e---eecC----------ceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 236 GQALQYDMDLECHVEAYPPP--AIVWIKE--DTQQ-V---LTNN----------QHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~--~~~W~~~--~~~~-~---~~~~----------~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
.+..|+++.|+|.+.|+.-. .+.|.+- ++.. . +... .++.+. .........|.|++++.
T Consensus 11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis---~D~s~~~~~L~i~~L~~ 87 (116)
T d7fabh1 11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTML---VNTSKNQFSLRLSSVTA 87 (116)
T ss_dssp EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEE---EETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceee---cccchhhhhcccccccc
Confidence 34568999999999986544 6788763 2110 0 1111 111111 11112356799999999
Q ss_pred CCCeEEEEEEEcCC
Q psy8823 298 RQYGSYICRAANKL 311 (386)
Q Consensus 298 ~d~G~Y~C~a~n~~ 311 (386)
+|.+.|.|......
T Consensus 88 eDtAvYyCAr~~~~ 101 (116)
T d7fabh1 88 ADTAVYYCARNLIA 101 (116)
T ss_dssp GGCEEEEEEEECSS
T ss_pred ccceEEEeeeecCC
Confidence 99999999764443
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.00 E-value=0.00029 Score=47.46 Aligned_cols=66 Identities=24% Similarity=0.540 Sum_probs=43.1
Q ss_pred ceEEEeCCccEEEEEEeeeeC--CCeEEEEEcC--eee------CCCC-----------ceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHP--TPRISWRREN--NAI------LPTG-----------GSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~------~~~~-----------~~~~------~~~~l~i~~~~ 195 (386)
....+++|++++|.|.+.|.. ...+.|++.. +.+ .... +... +...|.|.+++
T Consensus 8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~ 87 (121)
T d1j05b_ 8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT 87 (121)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence 344688999999999987753 3358888742 111 1111 1111 12359999999
Q ss_pred CCCCeEEEEEEec
Q psy8823 196 KEDRGTYYCVAEN 208 (386)
Q Consensus 196 ~~d~g~y~C~~~~ 208 (386)
.+|++.|.|....
T Consensus 88 ~eDtAvYYCAr~~ 100 (121)
T d1j05b_ 88 SEDTAVYYCAPFG 100 (121)
T ss_dssp GGGCEEEEEEEEB
T ss_pred cCcceEEEeEeec
Confidence 9999999997643
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.00 E-value=0.0025 Score=42.88 Aligned_cols=72 Identities=15% Similarity=0.345 Sum_probs=44.3
Q ss_pred cccCCCcEEEEEEEEecCCC--eeEEEeCC--eee----eee-cC----------ceeEEeeeeecCceeeeEEEEeecc
Q psy8823 236 GQALQYDMDLECHVEAYPPP--AIVWIKED--TQQ----VLT-NN----------QHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~--~~~W~~~~--~~~----~~~-~~----------~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.+..|+++.|+|.+.|+.-. .+.|.+.. +.. .+. .. .++.+.. ........|.+++++
T Consensus 10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~---D~s~~t~yLq~~sL~ 86 (124)
T d1zvya1 10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQ---DKAKNMAYLRMDSVK 86 (124)
T ss_dssp ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE---EGGGTEEEEEECSCC
T ss_pred eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEec---ccccceeeceecccc
Confidence 34568999999999986544 67887632 110 011 11 1111111 111234578999999
Q ss_pred cCCCeEEEEEEEcC
Q psy8823 297 KRQYGSYICRAANK 310 (386)
Q Consensus 297 ~~d~G~Y~C~a~n~ 310 (386)
.+|.+.|.|.....
T Consensus 87 ~eDtAvYYCAr~~~ 100 (124)
T d1zvya1 87 SEDTAIYTCGATRK 100 (124)
T ss_dssp GGGCEEEEEEECSS
T ss_pred CCcceEEEEeeccc
Confidence 99999999976543
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=96.98 E-value=0.00076 Score=44.94 Aligned_cols=66 Identities=27% Similarity=0.533 Sum_probs=43.7
Q ss_pred eEEEeCCccEEEEEEeeeeCCC--eEEEEEc--Cee------eCCCC-c---------e-EE------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPTP--RISWRRE--NNA------ILPTG-G---------S-IY------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~~--~v~W~~~--~~~------~~~~~-~---------~-~~------~~~~l~i~~~~~ 196 (386)
...+++|++++|.|.+.|.... .+.|++. |+. +.... . + .. +...|.|.+++.
T Consensus 9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~ 88 (118)
T d2fbjh1 9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS 88 (118)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence 3468899999999999886432 5788863 211 11111 1 1 11 123589999999
Q ss_pred CCCeEEEEEEecC
Q psy8823 197 EDRGTYYCVAENG 209 (386)
Q Consensus 197 ~d~g~y~C~~~~~ 209 (386)
+|++.|.|.....
T Consensus 89 eDtAvYYCAr~~~ 101 (118)
T d2fbjh1 89 EDTALYYCARLHY 101 (118)
T ss_dssp GGCEEEEEEEEET
T ss_pred CcceEEEeeEecC
Confidence 9999999986553
|
| >d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.98 E-value=2.6e-05 Score=53.32 Aligned_cols=74 Identities=8% Similarity=0.126 Sum_probs=48.1
Q ss_pred ccCCCcEEEEEEEEecCC----CeeEEEeCCeeeeeecCceeEEeeeeecCceeeeEEEEeecccCCCeEEEEEEEcCCC
Q psy8823 237 QALQYDMDLECHVEAYPP----PAIVWIKEDTQQVLTNNQHYSISHFATADEFTDTTIRVITIEKRQYGSYICRAANKLG 312 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 312 (386)
...+..++|.|.+.|+.+ ..+.|.+++.. .............+..+...+.|.|..-.++.+-.|+|.|.+...
T Consensus 26 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~--~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ytC~V~H~~l 103 (116)
T d1igyb3 26 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVE--VHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF 103 (116)
T ss_dssp HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCC--BCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred cccCCCcEEEEEEecEeCCCCEEEEEECcCCeE--cCCcEEcccEECCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence 456889999999998543 25678888766 322222222222233344567788877777777779999998753
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.97 E-value=0.00032 Score=47.36 Aligned_cols=64 Identities=23% Similarity=0.487 Sum_probs=42.4
Q ss_pred ceEEEeCCccEEEEEEeeeeCC--CeEEEEEc--Cee------eCCCC-c---------e-EE-e-----eeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPT--PRISWRRE--NNA------ILPTG-G---------S-IY-R-----GSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~------~~~~~-~---------~-~~-~-----~~~l~i~~~~ 195 (386)
....+++|++++|.|.+.|... -.+.|++. |+. +.... . + .. . ...|.+.+++
T Consensus 8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~ 87 (127)
T d1n0xh1 8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR 87 (127)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccC
Confidence 3456889999999999987543 35788873 211 11111 0 1 11 1 2358999999
Q ss_pred CCCCeEEEEEE
Q psy8823 196 KEDRGTYYCVA 206 (386)
Q Consensus 196 ~~d~g~y~C~~ 206 (386)
.+|++.|.|.-
T Consensus 88 ~eDtAvYYCAR 98 (127)
T d1n0xh1 88 SADTAVYYCAR 98 (127)
T ss_dssp GGGCEEEEEEE
T ss_pred CCCceEEEEEe
Confidence 99999999964
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.96 E-value=0.00029 Score=47.78 Aligned_cols=66 Identities=24% Similarity=0.534 Sum_probs=42.8
Q ss_pred ceEEEeCCccEEEEEEeeeeCC--CeEEEEEc--Cee------eCCC-----------CceEE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPT--PRISWRRE--NNA------ILPT-----------GGSIY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~------~~~~-----------~~~~~------~~~~l~i~~~~ 195 (386)
....+++|++++|.|.+.|... -.+.|++. |+. +... .+... +...|.|.+++
T Consensus 8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~ 87 (125)
T d1rihh1 8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLT 87 (125)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccC
Confidence 3446889999999999987542 34788763 211 1101 01111 12358999999
Q ss_pred CCCCeEEEEEEec
Q psy8823 196 KEDRGTYYCVAEN 208 (386)
Q Consensus 196 ~~d~g~y~C~~~~ 208 (386)
.+|++.|.|....
T Consensus 88 ~eDtAvYYCAR~~ 100 (125)
T d1rihh1 88 SEDSAVYYCARES 100 (125)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cccceEEEEeeeC
Confidence 9999999997653
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.93 E-value=0.00032 Score=46.94 Aligned_cols=65 Identities=28% Similarity=0.554 Sum_probs=42.9
Q ss_pred eEEEeCCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCCC----------ceE-E------eeeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPT--PRISWRREN--NA------ILPTG----------GSI-Y------RGSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~~----------~~~-~------~~~~l~i~~~~~ 196 (386)
...+++|++++|.|.+.|... -.+.|++.. +. +.... .+. . +...|.|.+++.
T Consensus 9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~ 88 (119)
T d1rz7h1 9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS 88 (119)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence 345789999999999987543 358888742 11 11111 011 1 123589999999
Q ss_pred CCCeEEEEEEec
Q psy8823 197 EDRGTYYCVAEN 208 (386)
Q Consensus 197 ~d~g~y~C~~~~ 208 (386)
+|++.|.|....
T Consensus 89 eDTAvYYCAr~~ 100 (119)
T d1rz7h1 89 EDTAVYYCAADP 100 (119)
T ss_dssp GGCEEEEEEECT
T ss_pred ccceEEEEeecC
Confidence 999999997643
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0018 Score=41.62 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=49.3
Q ss_pred CceEEEeCCccEEEEEEeeeeCCCeEE-EEEcCeeeCCCCceE--EeeeEEEECCCCCCCCeEEEEEEecCCC
Q psy8823 142 TRSLVVSEGQPVQLECFAGGHPTPRIS-WRRENNAILPTGGSI--YRGSILKIPQITKEDRGTYYCVAENGVG 211 (386)
Q Consensus 142 ~~~~~~~~g~~v~l~C~~~~~~~~~v~-W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 211 (386)
+..+.+.+|+.+.+.|.+.. |..+++ |..++..+...+... ....-++|.++...+.|.|.|.+.....
T Consensus 12 p~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~g~ 83 (95)
T d1fltx_ 12 PEIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVNGH 83 (95)
T ss_dssp CEEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEECCE
Confidence 34577899999999999964 555554 444666665433322 2344589999999999999999987643
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=96.92 E-value=0.00035 Score=47.09 Aligned_cols=64 Identities=22% Similarity=0.478 Sum_probs=42.0
Q ss_pred eEEEeCCccEEEEEEeeeeCC--CeEEEEEc--Cee------eCCC-C---------ce-E-Ee-----eeEEEECCCCC
Q psy8823 144 SLVVSEGQPVQLECFAGGHPT--PRISWRRE--NNA------ILPT-G---------GS-I-YR-----GSILKIPQITK 196 (386)
Q Consensus 144 ~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~------~~~~-~---------~~-~-~~-----~~~l~i~~~~~ 196 (386)
...+++|++++|.|.+.|... -.+.|++. |+. +... . .+ . .+ ...|.+.+++.
T Consensus 9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~ 88 (124)
T d2b1hh1 9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP 88 (124)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence 446789999999999987543 24788873 111 1111 1 00 0 11 23689999999
Q ss_pred CCCeEEEEEEe
Q psy8823 197 EDRGTYYCVAE 207 (386)
Q Consensus 197 ~d~g~y~C~~~ 207 (386)
+|++.|.|...
T Consensus 89 eDTA~YYCAR~ 99 (124)
T d2b1hh1 89 SDTALYYCARL 99 (124)
T ss_dssp GGCEEEEEEEE
T ss_pred ccceEEEEeec
Confidence 99999999543
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=96.91 E-value=0.0002 Score=46.92 Aligned_cols=61 Identities=28% Similarity=0.628 Sum_probs=39.1
Q ss_pred EeCCccEEEEEEeeeeC--CCeEEEEEcC--ee------eCCCC---------ceE-E------eeeEEEECCCCCCCCe
Q psy8823 147 VSEGQPVQLECFAGGHP--TPRISWRREN--NA------ILPTG---------GSI-Y------RGSILKIPQITKEDRG 200 (386)
Q Consensus 147 ~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~------~~~~~---------~~~-~------~~~~l~i~~~~~~d~g 200 (386)
+++|++++|.|.+.|.. ...+.|++.. +. +.... .+. . +...|.|.+++.+|++
T Consensus 5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA 84 (107)
T d1sjva_ 5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA 84 (107)
T ss_dssp CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence 57899999999997753 3357888742 11 11111 111 1 1236999999999999
Q ss_pred EEEEEEe
Q psy8823 201 TYYCVAE 207 (386)
Q Consensus 201 ~y~C~~~ 207 (386)
.|.|...
T Consensus 85 vYyCA~~ 91 (107)
T d1sjva_ 85 VYYCYTH 91 (107)
T ss_dssp EEEEEEC
T ss_pred eeeEecc
Confidence 9999654
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.90 E-value=0.0036 Score=41.41 Aligned_cols=70 Identities=13% Similarity=0.388 Sum_probs=43.0
Q ss_pred cccCCCcEEEEEEEEecCCC--eeEEEeC--Ceee-e---eecC----------ceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 236 GQALQYDMDLECHVEAYPPP--AIVWIKE--DTQQ-V---LTNN----------QHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~~--~~~W~~~--~~~~-~---~~~~----------~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
.+..|+++.|+|.+.|..-. .+.|.+. |+.. . +... .++.+.. ........|.|++++.
T Consensus 11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~---D~s~n~~~L~~~sL~~ 87 (117)
T d1c5db1 11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINR---DTSKSQVFLKMNSLQT 87 (117)
T ss_dssp EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEE---ETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEec---ccccceeecccccccc
Confidence 34578999999999887543 5788763 2210 0 1111 1222111 1112345799999999
Q ss_pred CCCeEEEEEEE
Q psy8823 298 RQYGSYICRAA 308 (386)
Q Consensus 298 ~d~G~Y~C~a~ 308 (386)
+|.+.|.|...
T Consensus 88 eDtAvYYCAr~ 98 (117)
T d1c5db1 88 EDTAIYFCTRE 98 (117)
T ss_dssp GGCEEEEEEEC
T ss_pred CcceEEEEecc
Confidence 99999999643
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=96.90 E-value=0.00041 Score=46.86 Aligned_cols=64 Identities=27% Similarity=0.498 Sum_probs=42.2
Q ss_pred EEEeCCccEEEEEEeeeeCC--CeEEEEEc--Ceee------CCCC-c---------e-EE------eeeEEEECCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGHPT--PRISWRRE--NNAI------LPTG-G---------S-IY------RGSILKIPQITKE 197 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~~------~~~~-~---------~-~~------~~~~l~i~~~~~~ 197 (386)
..+++|++++|.|.+.|... -.+.|++. |+.+ .... . + .. +...|.|.+++.+
T Consensus 10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e 89 (127)
T d2fx7h1 10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE 89 (127)
T ss_dssp EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence 45788999999999987543 34788863 2111 1110 0 0 01 1235899999999
Q ss_pred CCeEEEEEEec
Q psy8823 198 DRGTYYCVAEN 208 (386)
Q Consensus 198 d~g~y~C~~~~ 208 (386)
|++.|.|.-..
T Consensus 90 DTavYYCAR~~ 100 (127)
T d2fx7h1 90 DTAVYYCAREG 100 (127)
T ss_dssp GCEEEEEEEEE
T ss_pred cceEEEEeecc
Confidence 99999997654
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.90 E-value=0.0024 Score=42.84 Aligned_cols=70 Identities=10% Similarity=0.219 Sum_probs=42.3
Q ss_pred cccCCCcEEEEEEEEecCC--CeeEEEeC--Ceee-e---eec-C----------ceeEEeeeeecCceeeeEEEEeecc
Q psy8823 236 GQALQYDMDLECHVEAYPP--PAIVWIKE--DTQQ-V---LTN-N----------QHYSISHFATADEFTDTTIRVITIE 296 (386)
Q Consensus 236 ~~~~g~~~~l~C~~~g~p~--~~~~W~~~--~~~~-~---~~~-~----------~~~~~~~~~~~~~~~~~~L~i~~~~ 296 (386)
.+..|++++|+|.+.|..- ..+.|++. |+.. . +.. . .++.+.. ........|.|++++
T Consensus 11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~---d~s~~~~~L~i~~L~ 87 (119)
T d1qnzh_ 11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTV---EKSSSTVYLEFSRLT 87 (119)
T ss_dssp EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEE---ETTTTEEEEEEEEEC
T ss_pred eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeec---ccccceeeeeecccC
Confidence 3456999999999987542 25788863 2211 0 111 0 1111111 111234579999999
Q ss_pred cCCCeEEEEEEE
Q psy8823 297 KRQYGSYICRAA 308 (386)
Q Consensus 297 ~~d~G~Y~C~a~ 308 (386)
.+|.+.|.|...
T Consensus 88 ~eDsAvYYCA~~ 99 (119)
T d1qnzh_ 88 SDDSAVYYCAIH 99 (119)
T ss_dssp GGGCEEEEEEEC
T ss_pred ccceeEEEEEEe
Confidence 999999999654
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=96.90 E-value=0.0042 Score=42.10 Aligned_cols=70 Identities=13% Similarity=0.340 Sum_probs=43.1
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeCC--ee-eee---e------cC----------ceeEEeeeeecCceeeeEEEE
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKED--TQ-QVL---T------NN----------QHYSISHFATADEFTDTTIRV 292 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~~--~~-~~~---~------~~----------~~~~~~~~~~~~~~~~~~L~i 292 (386)
+..|+++.|+|.+.|+.-. .+.|++.. +. ..+ . .. .++.+.. ........|.|
T Consensus 12 vkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~---d~s~~~~~L~i 88 (127)
T d1i3ua_ 12 VQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSR---DNAKNTVNLQM 88 (127)
T ss_dssp CCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEE---EGGGTEEEEEE
T ss_pred ECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEec---cCCceEEEEee
Confidence 4569999999999886433 67898632 11 011 0 00 1111111 11123557999
Q ss_pred eecccCCCeEEEEEEEc
Q psy8823 293 ITIEKRQYGSYICRAAN 309 (386)
Q Consensus 293 ~~~~~~d~G~Y~C~a~n 309 (386)
++++.+|.+.|.|....
T Consensus 89 ~~l~~eDtAvYYCAr~~ 105 (127)
T d1i3ua_ 89 NSLKPEDTAVYYCAAKT 105 (127)
T ss_dssp CSCCGGGCEEEEEEEES
T ss_pred ecccccceeEEEEEEEe
Confidence 99999999999998653
|
| >d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: CD3 epsilon chain ectodomain fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.89 E-value=0.00099 Score=41.53 Aligned_cols=53 Identities=21% Similarity=0.513 Sum_probs=39.7
Q ss_pred CCccEEEEEEeeeeCCCeEEEEEcCeeeCCCCceEEeeeEEEECCCCC-CCCeEEEEEEec
Q psy8823 149 EGQPVQLECFAGGHPTPRISWRRENNAILPTGGSIYRGSILKIPQITK-EDRGTYYCVAEN 208 (386)
Q Consensus 149 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~ 208 (386)
.|.+|+|+|...+ ...+.|.+++..+..... ..|.+.+.+. +++|.|.|....
T Consensus 13 SGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~~~-----~~L~L~~FSE~e~SGyY~C~~~~ 66 (100)
T d1jbja2 13 SGTSVELTCPLDS--DENLKWEKNGQELPQKHD-----KHLVLQDFSEVEDSGYYVCYTPA 66 (100)
T ss_dssp ETTEEEEECSSCC--CTTCEEEETTEEECSCCC-----SEEEEESCCTTTSCEEEEEECSS
T ss_pred eCCEEEEECCCCC--CCceEEeeccccCCCCCC-----cEEEEccccccccCcceEEecCC
Confidence 5999999998654 346999999988765433 2477777655 799999996543
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.89 E-value=0.0024 Score=42.37 Aligned_cols=69 Identities=9% Similarity=0.263 Sum_probs=42.4
Q ss_pred ccCCCcEEEEEEEEecCCC--eeEEEeC--Ceee-e---ee-cC----------ceeEEeeeeecCceeeeEEEEeeccc
Q psy8823 237 QALQYDMDLECHVEAYPPP--AIVWIKE--DTQQ-V---LT-NN----------QHYSISHFATADEFTDTTIRVITIEK 297 (386)
Q Consensus 237 ~~~g~~~~l~C~~~g~p~~--~~~W~~~--~~~~-~---~~-~~----------~~~~~~~~~~~~~~~~~~L~i~~~~~ 297 (386)
+..|+++.|.|.+.|+.-. .+.|.+- ++.. . +. .. .++.+.. ........|.+++++.
T Consensus 12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~---D~s~~t~yLq~~~L~~ 88 (117)
T d1jnhb1 12 ARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTA---DRSSSIVYLQLNSLTS 88 (117)
T ss_dssp CCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEE---ETTTTEEEEEECSCCG
T ss_pred ECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEec---cCccceeeecccccCC
Confidence 4569999999999987544 5788762 2110 0 11 11 1111111 1112345799999999
Q ss_pred CCCeEEEEEEE
Q psy8823 298 RQYGSYICRAA 308 (386)
Q Consensus 298 ~d~G~Y~C~a~ 308 (386)
+|.+.|.|...
T Consensus 89 eDTAvYYCAr~ 99 (117)
T d1jnhb1 89 EDSAVYSCSRG 99 (117)
T ss_dssp GGCEEEEEEEE
T ss_pred CcceEEEEeec
Confidence 99999999653
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=96.88 E-value=0.00062 Score=46.24 Aligned_cols=64 Identities=25% Similarity=0.540 Sum_probs=42.6
Q ss_pred EEEeCCccEEEEEEeeeeCC--CeEEEEEcC--ee------eCCCC----------ceE-E------eeeEEEECCCCCC
Q psy8823 145 LVVSEGQPVQLECFAGGHPT--PRISWRREN--NA------ILPTG----------GSI-Y------RGSILKIPQITKE 197 (386)
Q Consensus 145 ~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~--~~------~~~~~----------~~~-~------~~~~l~i~~~~~~ 197 (386)
..+++|++++|.|.+.|... ..+.|++.. +. +.... .+. . ....|.|.+++.+
T Consensus 10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e 89 (135)
T d1ieha_ 10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE 89 (135)
T ss_dssp CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence 35789999999999987543 358888742 11 11111 011 1 1235899999999
Q ss_pred CCeEEEEEEec
Q psy8823 198 DRGTYYCVAEN 208 (386)
Q Consensus 198 d~g~y~C~~~~ 208 (386)
|++.|.|....
T Consensus 90 DTAvYYCAr~~ 100 (135)
T d1ieha_ 90 DTAVYYCAKYS 100 (135)
T ss_dssp SCEEEEEEEBS
T ss_pred cceeeEEEEec
Confidence 99999997654
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=96.87 E-value=0.00046 Score=46.56 Aligned_cols=64 Identities=25% Similarity=0.614 Sum_probs=42.5
Q ss_pred ceEEEeCCccEEEEEEeeeeCC--CeEEEEEc--Cee------eCCCC----------ce-EE------eeeEEEECCCC
Q psy8823 143 RSLVVSEGQPVQLECFAGGHPT--PRISWRRE--NNA------ILPTG----------GS-IY------RGSILKIPQIT 195 (386)
Q Consensus 143 ~~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~--~~~------~~~~~----------~~-~~------~~~~l~i~~~~ 195 (386)
....+++|++++|.|.+.|... ..+.|++. |+. +.... .+ .. +...|.|.+++
T Consensus 7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~ 86 (126)
T d1lmka1 7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT 86 (126)
T ss_dssp CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence 3456889999999999988643 34788873 211 11111 11 11 12368999999
Q ss_pred CCCCeEEEEEE
Q psy8823 196 KEDRGTYYCVA 206 (386)
Q Consensus 196 ~~d~g~y~C~~ 206 (386)
.+|++.|.|.-
T Consensus 87 ~eDTAvYYCAr 97 (126)
T d1lmka1 87 SEDSAVYYCAR 97 (126)
T ss_dssp GGGCEEEEEEE
T ss_pred CCcceEEEEee
Confidence 99999999964
|