Psyllid ID: psy8827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYLVCAL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHcccccEEEEEEccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHEHHHHcccccEEEEEEccccEEEEEccHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mhayedkgsfgeLALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYLVCAL
Flexible Loop (DISEMBL)
mhayedkgsfgELALLYNMPRAATIKATstgslwamdRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYLVCAL
Low Complexity Region (SEG)
MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYLVCAL
Disordered region (IsUnstruct)
*********FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYLVCA*
Disordered Region (DISOPRED)
******KGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK********YEKLIDAVPMLKSLQVMVFFLYLVCAL
Disordered Region (DISEMBL)
********SFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYLVCAL
Disordered Region (DISPRO)
***YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYLVCAL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLYLVCAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
P81900	377	cAMP-dependent protein ki	no	N/A	0.682	0.148	0.671	2e-23
P13861	404	cAMP-dependent protein ki	yes	N/A	0.829	0.168	0.647	8e-22
P12369	416	cAMP-dependent protein ki	yes	N/A	0.829	0.163	0.632	2e-21
P31324	416	cAMP-dependent protein ki	yes	N/A	0.829	0.163	0.632	2e-21
P31322	418	cAMP-dependent protein ki	yes	N/A	0.829	0.162	0.632	2e-21
P00515	401	cAMP-dependent protein ki	no	N/A	0.829	0.169	0.647	2e-21
P31323	418	cAMP-dependent protein ki	no	N/A	0.817	0.160	0.626	5e-21
P12368	401	cAMP-dependent protein ki	no	N/A	0.829	0.169	0.617	5e-21
P12367	401	cAMP-dependent protein ki	no	N/A	0.829	0.169	0.617	6e-21
Q26619	369	cAMP-dependent protein ki	yes	N/A	0.829	0.184	0.632	2e-20

>sp|P81900|KAPR2_DROME cAMP-dependent protein kinase type II regulatory subunit OS=Drosophila melanogaster GN=Pka-R2 PE=1 SV=2

 Score =  107 bits (267), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/70 (67%), Positives = 63/70 (90%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           ++ Y   G FGELALLYNMPRAAT++A ++G LWAMDR+TF++I+LKSAF+KRKMYE+L+
Sbjct: 178 INTYNHTGLFGELALLYNMPRAATVQAETSGLLWAMDRQTFRRILLKSAFRKRKMYEELL 237

Query: 61  DAVPMLKSLQ 70
           ++VPMLK+LQ
Sbjct: 238 NSVPMLKALQ 247

Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase. The regulatory subunit may play an essential role in the regulation of neuronal activity in the brain. Has a role in circadian locomotor rhythm, and behavioral response to cocaine and ethanol.
Drosophila melanogaster (taxid: 7227)

>sp|P13861|KAP2_HUMAN cAMP-dependent protein kinase type II-alpha regulatory subunit OS=Homo sapiens GN=PRKAR2A PE=1 SV=2

 Score =  102 bits (254), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 59/68 (86%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct: 200 YDNRGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 259

Query: 64  PMLKSLQV 71
           P+LKSL+V
Sbjct: 260 PLLKSLEV 267

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.

Homo sapiens (taxid: 9606)

>sp|P12369|KAP3_RAT cAMP-dependent protein kinase type II-beta regulatory subunit OS=Rattus norvegicus GN=Prkar2b PE=1 SV=3

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 58/68 (85%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct: 213 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272

Query: 64  PMLKSLQV 71
           P LKSL+V
Sbjct: 273 PFLKSLEV 280

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.

Rattus norvegicus (taxid: 10116)

>sp|P31324|KAP3_MOUSE cAMP-dependent protein kinase type II-beta regulatory subunit OS=Mus musculus GN=Prkar2b PE=1 SV=3

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 58/68 (85%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct: 213 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272

Query: 64  PMLKSLQV 71
           P LKSL+V
Sbjct: 273 PFLKSLEV 280

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.

Mus musculus (taxid: 10090)

>sp|P31322|KAP3_BOVIN cAMP-dependent protein kinase type II-beta regulatory subunit OS=Bos taurus GN=PRKAR2B PE=2 SV=2

 Score =  101 bits (251), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 58/68 (85%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct: 215 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 274

Query: 64  PMLKSLQV 71
           P LKSL+V
Sbjct: 275 PFLKSLEV 282

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.

Bos taurus (taxid: 9913)

>sp|P00515|KAP2_BOVIN cAMP-dependent protein kinase type II-alpha regulatory subunit OS=Bos taurus GN=PRKAR2A PE=1 SV=2

 Score =  100 bits (250), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 58/68 (85%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y++ GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct: 197 YDNHGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 256

Query: 64  PMLKSLQV 71
           P+LKSL+V
Sbjct: 257 PLLKSLEV 264

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.

Bos taurus (taxid: 9913)

>sp|P31323|KAP3_HUMAN cAMP-dependent protein kinase type II-beta regulatory subunit OS=Homo sapiens GN=PRKAR2B PE=1 SV=3

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 57/67 (85%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct: 215 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 274

Query: 64  PMLKSLQ 70
           P LKSL+
Sbjct: 275 PFLKSLE 281

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.

Homo sapiens (taxid: 9606)

>sp|P12368|KAP2_RAT cAMP-dependent protein kinase type II-alpha regulatory subunit OS=Rattus norvegicus GN=Prkar2a PE=1 SV=3

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 58/68 (85%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct: 197 YDNRGSFGELALMYNTPRAATIVATSDGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 256

Query: 64  PMLKSLQV 71
           P+ KSL++
Sbjct: 257 PLFKSLEM 264

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.

Rattus norvegicus (taxid: 10116)

>sp|P12367|KAP2_MOUSE cAMP-dependent protein kinase type II-alpha regulatory subunit OS=Mus musculus GN=Prkar2a PE=1 SV=2

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 58/68 (85%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct: 197 YDNRGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 256

Query: 64  PMLKSLQV 71
           P+ KSL++
Sbjct: 257 PLFKSLEM 264

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells. Type II regulatory chains mediate membrane association by binding to anchoring proteins, including the MAP2 kinase.

Mus musculus (taxid: 10090)

>sp|Q26619|KAPR_STRPU cAMP-dependent protein kinase type II regulatory subunit OS=Strongylocentrotus purpuratus PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 58/68 (85%)

Query: 3   AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDA 62
           AY+D GSFGELAL+YN PRAATI AT+ G LWA+DR +F++IVLK+A KKR++YE+L++ 
Sbjct: 177 AYKDSGSFGELALMYNTPRAATIAATTDGILWALDRVSFRRIVLKNAAKKRRIYEELLEK 236

Query: 63  VPMLKSLQ 70
           V + KSL+
Sbjct: 237 VSIFKSLE 244

Strongylocentrotus purpuratus (taxid: 7668)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
270009933	411	hypothetical protein TcasGA2_TC009259 [T	0.853	0.170	0.785	1e-26
91085999	383	PREDICTED: similar to cAMP-dependent pro	0.853	0.182	0.785	2e-26
193688312	385	PREDICTED: cAMP-dependent protein kinase	0.853	0.181	0.8	3e-26
242016510	234	cAMP-dependent protein kinase type II-al	0.890	0.311	0.739	4e-26
118785974	381	AGAP004940-PA [Anopheles gambiae str. PE	0.853	0.183	0.742	2e-25
357603513	382	cAMP-dependent protein kinase R2 [Danaus	0.853	0.183	0.728	2e-25
157121145	306	camp-dependent protein kinase type ii re	0.853	0.228	0.742	2e-25
157121147	311	camp-dependent protein kinase type ii re	0.853	0.225	0.742	3e-25
322791145	281	hypothetical protein SINV_12675 [Solenop	0.853	0.249	0.728	3e-25
157141984	203	camp-dependent protein kinase type ii re	0.853	0.344	0.742	4e-25

>gi|270009933|gb|EFA06381.1| hypothetical protein TcasGA2_TC009259 [Tribolium castaneum]

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/70 (78%), Positives = 65/70 (92%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H YE+ GSFGELALLYNMPRAATIKA + GSLWAMDR+TF++I+LKSAFKKRKMYE LI
Sbjct: 212 IHTYENSGSFGELALLYNMPRAATIKAQTDGSLWAMDRQTFRRILLKSAFKKRKMYETLI 271

Query: 61  DAVPMLKSLQ 70
           ++VPMLK+LQ
Sbjct: 272 ESVPMLKTLQ 281

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085999|ref|XP_972435.1| PREDICTED: similar to cAMP-dependent protein kinase R2 [Tribolium castaneum]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/70 (78%), Positives = 65/70 (92%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H YE+ GSFGELALLYNMPRAATIKA + GSLWAMDR+TF++I+LKSAFKKRKMYE LI
Sbjct: 184 IHTYENSGSFGELALLYNMPRAATIKAQTDGSLWAMDRQTFRRILLKSAFKKRKMYETLI 243

Query: 61  DAVPMLKSLQ 70
           ++VPMLK+LQ
Sbjct: 244 ESVPMLKTLQ 253

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193688312|ref|XP_001944873.1| PREDICTED: cAMP-dependent protein kinase type II regulatory subunit-like [Acyrthosiphon pisum]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/70 (80%), Positives = 63/70 (90%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H YE KGSFGELALLYNMPRAATIKA S G LWAMDR+ F++IVLKSAFKKRKMYE+LI
Sbjct: 186 VHTYEHKGSFGELALLYNMPRAATIKAKSDGLLWAMDRQIFRRIVLKSAFKKRKMYEELI 245

Query: 61  DAVPMLKSLQ 70
           + VPMLK+LQ
Sbjct: 246 EVVPMLKTLQ 255

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016510|ref|XP_002428830.1| cAMP-dependent protein kinase type II-alpha regulatory subunit, putative [Pediculus humanus corporis] gi|212513566|gb|EEB16092.1| cAMP-dependent protein kinase type II-alpha regulatory subunit, putative [Pediculus humanus corporis]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 67/73 (91%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H YED GSFGELALLYNMPRAA++KA + GSLWAMDR TF++I+LKSAFKKRKMYE+L+
Sbjct: 117 VHTYEDFGSFGELALLYNMPRAASVKAVTEGSLWAMDRLTFRRIILKSAFKKRKMYEQLL 176

Query: 61  DAVPMLKSLQVMV 73
           ++VPMLK+LQ +V
Sbjct: 177 ESVPMLKALQTLV 189

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118785974|ref|XP_315029.3| AGAP004940-PA [Anopheles gambiae str. PEST] gi|116127664|gb|EAA10349.4| AGAP004940-PA [Anopheles gambiae str. PEST]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/70 (74%), Positives = 65/70 (92%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H Y+++GSFGELALLYNMPRAATI+A + G LWAMDR+TF++I+LKSAF+KRKMYE L+
Sbjct: 183 IHTYDNRGSFGELALLYNMPRAATIQAETDGKLWAMDRQTFRRILLKSAFRKRKMYEALL 242

Query: 61  DAVPMLKSLQ 70
           DAVPMLK+LQ
Sbjct: 243 DAVPMLKTLQ 252

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603513|gb|EHJ63809.1| cAMP-dependent protein kinase R2 [Danaus plexippus]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/70 (72%), Positives = 64/70 (91%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H YE  GSFGELAL+YNMPRAA+++ATS G+LWAMDR TF++I+LKSAFKKRK+YE+L+
Sbjct: 183 VHTYEGSGSFGELALMYNMPRAASVRATSPGALWAMDRHTFRRILLKSAFKKRKLYEELL 242

Query: 61  DAVPMLKSLQ 70
           D VPMLK+LQ
Sbjct: 243 DKVPMLKALQ 252

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121145|ref|XP_001659847.1| camp-dependent protein kinase type ii regulatory subunit [Aedes aegypti] gi|108874711|gb|EAT38936.1| AAEL009216-PB, partial [Aedes aegypti]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 64/70 (91%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H Y++ GSFGELALLYNMPRAATI+A + G LWAMDR+TF++I+LKSAF+KRKMYE L+
Sbjct: 108 IHTYDNSGSFGELALLYNMPRAATIQAETDGQLWAMDRQTFRRILLKSAFRKRKMYEALL 167

Query: 61  DAVPMLKSLQ 70
           DAVPMLK+LQ
Sbjct: 168 DAVPMLKTLQ 177

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157121147|ref|XP_001659848.1| camp-dependent protein kinase type ii regulatory subunit [Aedes aegypti] gi|108874712|gb|EAT38937.1| AAEL009216-PA, partial [Aedes aegypti]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 64/70 (91%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H Y++ GSFGELALLYNMPRAATI+A + G LWAMDR+TF++I+LKSAF+KRKMYE L+
Sbjct: 108 IHTYDNSGSFGELALLYNMPRAATIQAETDGQLWAMDRQTFRRILLKSAFRKRKMYEALL 167

Query: 61  DAVPMLKSLQ 70
           DAVPMLK+LQ
Sbjct: 168 DAVPMLKTLQ 177

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791145|gb|EFZ15707.1| hypothetical protein SINV_12675 [Solenopsis invicta]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/70 (72%), Positives = 67/70 (95%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H Y+++G+FGELALLYNMPRAAT+KA +TG+LWAMDR+TF++I+LKSA+KKRKMYE+LI
Sbjct: 82  IHTYDNRGAFGELALLYNMPRAATVKAITTGTLWAMDRQTFRRILLKSAYKKRKMYEQLI 141

Query: 61  DAVPMLKSLQ 70
           + VPMLKSL+
Sbjct: 142 NKVPMLKSLE 151

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157141984|ref|XP_001647777.1| camp-dependent protein kinase type ii regulatory subunit [Aedes aegypti] gi|108868166|gb|EAT32445.1| AAEL015314-PA, partial [Aedes aegypti]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 64/70 (91%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
           +H Y++ GSFGELALLYNMPRAATI+A + G LWAMDR+TF++I+LKSAF+KRKMYE L+
Sbjct: 108 IHTYDNSGSFGELALLYNMPRAATIQAETDGQLWAMDRQTFRRILLKSAFRKRKMYEALL 167

Query: 61  DAVPMLKSLQ 70
           DAVPMLK+LQ
Sbjct: 168 DAVPMLKTLQ 177

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
FB|FBgn0022382	377	Pka-R2 "cAMP-dependent protein	0.853	0.185	0.671	5.5e-22
UNIPROTKB|Q9BUB1	382	PRKAR2A "Protein kinase, cAMP-	0.829	0.178	0.647	4.6e-20
UNIPROTKB|P13861	404	PRKAR2A "cAMP-dependent protei	0.829	0.168	0.647	6.4e-20
UNIPROTKB|H7C1L0	200	PRKAR2A "cAMP-dependent protei	0.817	0.335	0.641	7.2e-20
UNIPROTKB|P00515	401	PRKAR2A "cAMP-dependent protei	0.829	0.169	0.647	1.3e-19
UNIPROTKB|C1PIG4	401	PRKAR2A "cAMP-dependent protei	0.829	0.169	0.647	1.3e-19
MGI|MGI:97760	416	Prkar2b "protein kinase, cAMP	0.829	0.163	0.632	1.6e-19
RGD|3394	416	Prkar2b "protein kinase, cAMP	0.829	0.163	0.632	1.6e-19
UNIPROTKB|E2RRA1	417	PRKAR2B "Uncharacterized prote	0.829	0.163	0.632	1.6e-19
UNIPROTKB|F6Q9S4	418	PRKAR2B "cAMP-dependent protei	0.829	0.162	0.632	1.6e-19

FB|FBgn0022382 Pka-R2 "cAMP-dependent protein kinase R2" [Drosophila melanogaster (taxid:7227)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 47/70 (67%), Positives = 63/70 (90%)

Query:     1 MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
             ++ Y   G FGELALLYNMPRAAT++A ++G LWAMDR+TF++I+LKSAF+KRKMYE+L+
Sbjct:   178 INTYNHTGLFGELALLYNMPRAATVQAETSGLLWAMDRQTFRRILLKSAFRKRKMYEELL 237

Query:    61 DAVPMLKSLQ 70
             ++VPMLK+LQ
Sbjct:   238 NSVPMLKALQ 247

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISS;NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA;ISS;NAS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048148 "behavioral response to cocaine" evidence=NAS;IMP

GO:0048149 "behavioral response to ethanol" evidence=NAS;IMP;TAS

GO:0007623 "circadian rhythm" evidence=NAS;IMP

GO:0045475 "locomotor rhythm" evidence=NAS;IMP

GO:0007622 "rhythmic behavior" evidence=TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0007411 "axon guidance" evidence=IMP

UNIPROTKB|Q9BUB1 PRKAR2A "Protein kinase, cAMP-dependent, regulatory, type II, alpha" [Homo sapiens (taxid:9606)]

 Score = 240 (89.5 bits), Expect = 4.6e-20, P = 4.6e-20
 Identities = 44/68 (64%), Positives = 59/68 (86%)

Query:     4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             Y+++GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct:   200 YDNRGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 259

Query:    64 PMLKSLQV 71
             P+LKSL+V
Sbjct:   260 PLLKSLEV 267

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|P13861 PRKAR2A "cAMP-dependent protein kinase type II-alpha regulatory subunit" [Homo sapiens (taxid:9606)]

 Score = 240 (89.5 bits), Expect = 6.4e-20, P = 6.4e-20
 Identities = 44/68 (64%), Positives = 59/68 (86%)

Query:     4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             Y+++GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct:   200 YDNRGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 259

Query:    64 PMLKSLQV 71
             P+LKSL+V
Sbjct:   260 PLLKSLEV 267

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=NAS

GO:0031625 "ubiquitin protein ligase binding" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=TAS

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006833 "water transport" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007202 "activation of phospholipase C activity" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0034199 "activation of protein kinase A activity" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

UNIPROTKB|H7C1L0 PRKAR2A "cAMP-dependent protein kinase type II-alpha regulatory subunit" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 43/67 (64%), Positives = 58/67 (86%)

Query:     4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             Y+++GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct:    89 YDNRGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 148

Query:    64 PMLKSLQ 70
             P+LKSL+
Sbjct:   149 PLLKSLE 155

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

UNIPROTKB|P00515 PRKAR2A "cAMP-dependent protein kinase type II-alpha regulatory subunit" [Bos taurus (taxid:9913)]

 Score = 237 (88.5 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 44/68 (64%), Positives = 58/68 (85%)

Query:     4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             Y++ GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct:   197 YDNHGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 256

Query:    64 PMLKSLQV 71
             P+LKSL+V
Sbjct:   257 PLLKSLEV 264

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

UNIPROTKB|C1PIG4 PRKAR2A "cAMP-dependent protein kinase regulatory subunit type II alpha" [Sus scrofa (taxid:9823)]

 Score = 237 (88.5 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 44/68 (64%), Positives = 58/68 (85%)

Query:     4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             Y++ GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct:   197 YDNHGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 256

Query:    64 PMLKSLQV 71
             P+LKSL+V
Sbjct:   257 PLLKSLEV 264

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

MGI|MGI:97760 Prkar2b "protein kinase, cAMP dependent regulatory, type II beta" [Mus musculus (taxid:10090)]

 Score = 237 (88.5 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 43/68 (63%), Positives = 58/68 (85%)

Query:     4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct:   213 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272

Query:    64 PMLKSLQV 71
             P LKSL+V
Sbjct:   273 PFLKSLEV 280

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005952 "cAMP-dependent protein kinase complex" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0007612 "learning" evidence=IMP

GO:0008283 "cell proliferation" evidence=TAS

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO;IDA

GO:0009887 "organ morphogenesis" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030552 "cAMP binding" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045859 "regulation of protein kinase activity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|3394 Prkar2b "protein kinase, cAMP dependent regulatory, type II beta" [Rattus norvegicus (taxid:10116)]

 Score = 237 (88.5 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 43/68 (63%), Positives = 58/68 (85%)

Query:     4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct:   213 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272

Query:    64 PMLKSLQV 71
             P LKSL+V
Sbjct:   273 PFLKSLEV 280

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA;IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0007612 "learning" evidence=IEA;ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA;ISO;IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IMP

GO:0030552 "cAMP binding" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0034236 "protein kinase A catalytic subunit binding" evidence=IC

GO:0045121 "membrane raft" evidence=IDA

GO:0045859 "regulation of protein kinase activity" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0097332 "response to antipsychotic drug" evidence=IEP

GO:0097338 "response to clozapine" evidence=IEP

UNIPROTKB|E2RRA1 PRKAR2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 237 (88.5 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 43/68 (63%), Positives = 58/68 (85%)

Query:     4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct:   214 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 273

Query:    64 PMLKSLQV 71
             P LKSL+V
Sbjct:   274 PFLKSLEV 281

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

UNIPROTKB|F6Q9S4 PRKAR2B "cAMP-dependent protein kinase type II-beta regulatory subunit" [Bos taurus (taxid:9913)]

 Score = 237 (88.5 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 43/68 (63%), Positives = 58/68 (85%)

Query:     4 YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct:   215 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 274

Query:    64 PMLKSLQV 71
             P LKSL+V
Sbjct:   275 PFLKSLEV 282

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P31324	KAP3_MOUSE	No assigned EC number	0.6323	0.8292	0.1634	yes	N/A
P31322	KAP3_BOVIN	No assigned EC number	0.6323	0.8292	0.1626	yes	N/A
Q26619	KAPR_STRPU	No assigned EC number	0.6323	0.8292	0.1842	yes	N/A
P07278	KAPR_YEAST	No assigned EC number	0.6393	0.7439	0.1466	yes	N/A
Q6CPK7	KAPR_KLULA	No assigned EC number	0.5737	0.7439	0.1309	yes	N/A
Q6FQL6	KAPR_CANGA	No assigned EC number	0.5901	0.7439	0.1509	yes	N/A
Q6BZG7	KAPR_DEBHA	No assigned EC number	0.5396	0.7439	0.1349	yes	N/A
O59922	KAPR_EMENI	No assigned EC number	0.5937	0.7682	0.1529	yes	N/A
Q9C196	KAPR_ASPNG	No assigned EC number	0.5625	0.7682	0.1532	yes	N/A
P13861	KAP2_HUMAN	No assigned EC number	0.6470	0.8292	0.1683	yes	N/A
Q96UX3	KAPR_ASPFU	No assigned EC number	0.5781	0.7682	0.1525	yes	N/A
Q6C2X0	KAPR_YARLI	No assigned EC number	0.5081	0.7439	0.1626	yes	N/A
P12369	KAP3_RAT	No assigned EC number	0.6323	0.8292	0.1634	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	2e-09
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	4e-08
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	1e-05
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	1e-04

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 50.0 bits (120), Expect = 2e-09
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 9   SFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
            FGELALL N PR+AT++A +   L  + R  F++++ +     R++ 
Sbjct: 68  LFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRLL 115

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 45.8 bits (109), Expect = 4e-08
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 10 FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKS 48
          FGELALL   PR+AT+ A +   L  + R+ F +++ + 
Sbjct: 51 FGELALLGGEPRSATVVALTDSELLVIPREDFLELLEQD 89

Length = 91

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 9   SFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
            FGELALL N  RAA+  A +   L  + R  F+  +       + + E L+
Sbjct: 68  FFGELALLTNSRRAASAAAVAL-ELATLLRIDFRDFLQLLPELPQLLLELLL 118

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 10  FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKS 48
           FGELALL   PR+A+  A +   +  + RK F +++ +S
Sbjct: 75  FGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAES 113

Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG0614|consensus	732		99.65
KOG1113|consensus	368		99.61
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.11
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.1
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.08
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.08
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.04
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.03
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.01
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	98.74
cd00038	115	CAP_ED effector domain of the CAP family of transc	98.63
PRK09391	230	fixK transcriptional regulator FixK; Provisional	98.61
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	98.57
KOG0499|consensus	815		98.51
KOG0498|consensus	727		98.46
KOG1113|consensus	368		98.46
KOG0500|consensus	536		98.39
KOG0614|consensus	732		98.36
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	98.33
PLN02868	413	acyl-CoA thioesterase family protein	97.8
KOG2968|consensus	1158		97.49
KOG2968|consensus	1158		97.36
KOG2378|consensus	573		97.3
COG2905	610	Predicted signal-transduction protein containing c	97.16
KOG0501|consensus	971		94.79
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	91.41
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	86.93

>KOG0614|consensus

Probab=99.65  E-value=5.5e-17  Score=116.19  Aligned_cols=76  Identities=29%  Similarity=0.648  Sum_probs=71.5

Q ss_pred             CcccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHH
Q psy8827           1 MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFL   76 (82)
Q Consensus         1 v~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~   76 (82)
                      ++.+++|..|||+|++++++|+|||+|+++|++|.|+|+.|+.|++.....++.++.+||+++|+|++++++-...
T Consensus       215 l~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~K  290 (732)
T KOG0614|consen  215 LGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLK  290 (732)
T ss_pred             eeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999876543

>KOG1113|consensus

Probab=99.61  E-value=7.1e-17  Score=110.49  Aligned_cols=77  Identities=49%  Similarity=0.846  Sum_probs=72.7

Q ss_pred             CcccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827           1 MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY   77 (82)
Q Consensus         1 v~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~   77 (82)
                      +..++||++|||++|+++.||.|||+|.+++.+|.+++-.|++++......+++++..+++++|+++++...+|...
T Consensus       183 v~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~~l~k~er~kv  259 (368)
T KOG1113|consen  183 VTTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILESLEKLERAKV  259 (368)
T ss_pred             EeeeCCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhHHHHHHHHHhh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999888653

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=99.11  E-value=3.9e-10  Score=71.00  Aligned_cols=79  Identities=11%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             cccCCCCeeehhhhcCCCC--ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHH-------HHHhhCccccCCCHH
Q psy8827           2 HAYEDKGSFGELALLYNMP--RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE-------KLIDAVPMLKSLQVM   72 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~--r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~-------~~l~~~~~~~~l~~~   72 (82)
                      ..++||++||+.+++.+.+  +..+++|.++|+++.+++++|..++.+++........       .....+..+...+..
T Consensus        37 ~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~l~~~~~~~l~~~l~~~~~~~~~l~~~~~~  116 (193)
T TIGR03697        37 ALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEKAIEEDPDLSMLLLQGLSSRILQTEMMIETLAHRDMG  116 (193)
T ss_pred             EEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            5689999999999998875  5688999999999999999999999888766543333       233334455667788


Q ss_pred             HHHHHHHh
Q psy8827          73 VFFLYLVC   80 (82)
Q Consensus        73 ~~~~~~~~   80 (82)
                      +|++.+++
T Consensus       117 ~Rla~~L~  124 (193)
T TIGR03697       117 SRLVSFLL  124 (193)
T ss_pred             HHHHHHHH
Confidence            88776554

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.10  E-value=3.9e-10  Score=84.78  Aligned_cols=69  Identities=14%  Similarity=0.212  Sum_probs=62.7

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCC
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQ   70 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~   70 (82)
                      +.+++||+|||++++.+.|+++|++|.++|+++.+++++|.+++++++........++++...-++.+.
T Consensus       440 ~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~  508 (823)
T PLN03192        440 GTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLN  508 (823)
T ss_pred             EEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccc
Confidence            568999999999999999999999999999999999999999999999988888888888776666654

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.08  E-value=7.5e-10  Score=72.02  Aligned_cols=79  Identities=8%  Similarity=0.050  Sum_probs=63.8

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH-------HHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY-------EKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~-------~~~l~~~~~~~~l~~~~~   74 (82)
                      ..+++|++||+.+++.+.|+.++++|.++|+++.+++++|.+++.+++.......       ....+.+..+...+..+|
T Consensus        73 ~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~R  152 (236)
T PRK09392         73 AILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSSAER  152 (236)
T ss_pred             EEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence            4678999999999999999999999999999999999999999988876654432       333444445566788888


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.++.
T Consensus       153 la~~Ll  158 (236)
T PRK09392        153 LANYLL  158 (236)
T ss_pred             HHHHHH
Confidence            886654

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.08  E-value=9.2e-10  Score=71.56  Aligned_cols=79  Identities=15%  Similarity=0.155  Sum_probs=60.2

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHH-------HHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK-------LIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~-------~l~~~~~~~~l~~~~~   74 (82)
                      ..+.||++|||.+++.+.++++++.|.++|.++.+++++|..++..++.........       ....+.....++..+|
T Consensus        75 ~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~R  154 (226)
T PRK10402         75 DFFAAPCFIGEIELIDKDHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRNIVSLTQNQSFPLENR  154 (226)
T ss_pred             eecCCCCeEEeehhhcCCCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHH
Confidence            467899999999999999999999999999999999999999998887554432222       2222222334577888


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.+++
T Consensus       155 la~~L~  160 (226)
T PRK10402        155 LAAFIL  160 (226)
T ss_pred             HHHHHH
Confidence            886654

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.04  E-value=3.2e-10  Score=62.98  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=45.5

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSA   49 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~   49 (82)
                      ..+++|++||+.+++.+.++..+++|.++|+++.+++++|.+++.++|
T Consensus        43 ~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~p   90 (91)
T PF00027_consen   43 FFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPREDFLQLLQQDP   90 (91)
T ss_dssp             EEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHHHHHHHHHSH
T ss_pred             cceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHHHHHHHHhCc
Confidence            467899999999999999999999999999999999999999998876

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.03  E-value=1.8e-09  Score=68.87  Aligned_cols=78  Identities=18%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             cccCCCCeeehhhhcCCC-CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHHH
Q psy8827           2 HAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVMV   73 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~-~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~~   73 (82)
                      ..+++|++||+.+++.+. +++++++|.++|+++.+++++|.+++..++......       .....+.+.-+...+..+
T Consensus        64 ~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  143 (211)
T PRK11753         64 SYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTG  143 (211)
T ss_pred             EEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence            467999999999999865 688999999999999999999999998877654322       233334444456677778


Q ss_pred             HHHHHH
Q psy8827          74 FFLYLV   79 (82)
Q Consensus        74 ~~~~~~   79 (82)
                      |++..+
T Consensus       144 Rl~~~L  149 (211)
T PRK11753        144 RIAQTL  149 (211)
T ss_pred             HHHHHH
Confidence            876543

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.01  E-value=1.3e-09  Score=68.60  Aligned_cols=78  Identities=22%  Similarity=0.244  Sum_probs=56.2

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~   74 (82)
                      ..++|||+|||.+++.+.||+++++|.++|++|.+++++|..++.+.|...+.       ........+......+..+|
T Consensus        67 ~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~r  146 (214)
T COG0664          67 GFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERLSLLARKDVEER  146 (214)
T ss_pred             EEecCCchhhhHHHhcCCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            45789999999999999999999999999999999999999998773333222       22222333333344555666


Q ss_pred             HHHHH
Q psy8827          75 FLYLV   79 (82)
Q Consensus        75 ~~~~~   79 (82)
                      ++..+
T Consensus       147 ~~~~l  151 (214)
T COG0664         147 LARFL  151 (214)
T ss_pred             HHHHH
Confidence            55443

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=98.74  E-value=4e-08  Score=62.34  Aligned_cols=78  Identities=12%  Similarity=0.024  Sum_probs=51.2

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHH-HHHHHHHHhhCccccCCCHHHHHHHHHh
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKK-RKMYEKLIDAVPMLKSLQVMVFFLYLVC   80 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~   80 (82)
                      ..++|||+|||.+++ +.+++.++.|.++|+++.++++.|..-+....... .+......+.+..+...+..+|++.+++
T Consensus        52 ~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll  130 (202)
T PRK13918         52 RYVRPGEYFGEEALA-GAERAYFAEAVTDSRIDVLNPALMSAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALL  130 (202)
T ss_pred             EEecCCCeechHHhc-CCCCCceEEEcCceEEEEEEHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            457999999998765 57899999999999999999887733221111111 1122233344444555677888886654

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=98.63  E-value=6.9e-08  Score=54.76  Aligned_cols=51  Identities=31%  Similarity=0.423  Sum_probs=46.3

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKK   52 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~   52 (82)
                      ..+.+|++||+.+++.+.++..+++|.++|.+|.+++++|..++.+.+...
T Consensus        61 ~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~  111 (115)
T cd00038          61 GFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELA  111 (115)
T ss_pred             EecCCccCcChHHHhcCCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhH
Confidence            457899999999999889999999999999999999999999998887543

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=98.61  E-value=2.8e-07  Score=60.12  Aligned_cols=76  Identities=13%  Similarity=0.056  Sum_probs=57.4

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHH-------HHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK-------LIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~-------~l~~~~~~~~l~~~~~   74 (82)
                      ..+.|||+||+.   .+.+++.+++|+++|.++.++.++|.+++.+++...+.....       ....+..+...+..+|
T Consensus        82 ~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~R  158 (230)
T PRK09391         82 AFHLPGDVFGLE---SGSTHRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMER  158 (230)
T ss_pred             EEecCCceeccc---CCCcCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            346899999974   466788999999999999999999999998887665433222       2334445666788888


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.++.
T Consensus       159 la~~Ll  164 (230)
T PRK09391        159 VAAFLL  164 (230)
T ss_pred             HHHHHH
Confidence            886654

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=98.57  E-value=3.9e-07  Score=59.14  Aligned_cols=78  Identities=9%  Similarity=-0.031  Sum_probs=56.9

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~~~   74 (82)
                      ..+.|||+||+.+++. .+.+.+++|.++++++.++++.|.+++.+++......       .......+..+...+..+|
T Consensus        81 ~~~~~gd~~g~~~~~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~R  159 (235)
T PRK11161         81 GFHLAGDLVGFDAIGS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILLLSKKNAEER  159 (235)
T ss_pred             EeccCCceeccccccC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            3468999999987754 4556789999999999999999999998887654322       2223344445666788888


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.++.
T Consensus       160 la~~L~  165 (235)
T PRK11161        160 LAAFIY  165 (235)
T ss_pred             HHHHHH
Confidence            775543

>KOG0499|consensus

Probab=98.51  E-value=1.1e-07  Score=69.78  Aligned_cols=64  Identities=23%  Similarity=0.363  Sum_probs=52.1

Q ss_pred             cccCCCCeeehhhhcC---CCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHH---HHHHHHHHhhCcc
Q psy8827           2 HAYEDKGSFGELALLY---NMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKK---RKMYEKLIDAVPM   65 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~---~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~---~~~~~~~l~~~~~   65 (82)
                      ..|..|..|||++|+.   +..|||+|+|.+.|.+++++++|++.++..+|..+   ++..+.++++-.-
T Consensus       592 ~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~nak  661 (815)
T KOG0499|consen  592 VTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQNAK  661 (815)
T ss_pred             EEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHhccc
Confidence            4688999999999984   56899999999999999999999999998776543   3455566665443

>KOG0498|consensus

Probab=98.46  E-value=1.1e-07  Score=71.02  Aligned_cols=57  Identities=18%  Similarity=0.269  Sum_probs=51.0

Q ss_pred             cccCCCCeee-hhhhcCC-CCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHH
Q psy8827           2 HAYEDKGSFG-ELALLYN-MPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK   58 (82)
Q Consensus         2 ~~l~~G~~FG-E~al~~~-~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~   58 (82)
                      ..|+|||+|| |+..... .|.++||+|.|.|++..|++++|..+++.++....++.+.
T Consensus       485 ~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~  543 (727)
T KOG0498|consen  485 AILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQH  543 (727)
T ss_pred             EEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHh
Confidence            5799999999 9999988 8999999999999999999999999999988766666553

>KOG1113|consensus

Probab=98.46  E-value=1.5e-07  Score=65.10  Aligned_cols=48  Identities=33%  Similarity=0.435  Sum_probs=45.0

Q ss_pred             ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHH
Q psy8827           3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAF   50 (82)
Q Consensus         3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~   50 (82)
                      .+++||+|||++++.+.||.|||.|.++..|..++++.|++++.....
T Consensus       304 kl~~~dyfge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~d  351 (368)
T KOG1113|consen  304 KLKKGDYFGELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQD  351 (368)
T ss_pred             EechhhhcchHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence            678999999999999999999999999999999999999999976654

>KOG0500|consensus

Probab=98.39  E-value=5.9e-07  Score=64.50  Aligned_cols=52  Identities=13%  Similarity=0.319  Sum_probs=46.6

Q ss_pred             cccCCCCeeehhhhcC------CCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827           2 HAYEDKGSFGELALLY------NMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR   53 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~------~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~   53 (82)
                      ..+..|++|||++++.      +..|+|+|++++.+.+.+++++|+-+.|.++|..+.
T Consensus       371 ~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~  428 (536)
T KOG0500|consen  371 VTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARK  428 (536)
T ss_pred             EEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHH
Confidence            4688999999999984      568999999999999999999999999999987643

>KOG0614|consensus

Probab=98.36  E-value=2.5e-07  Score=67.33  Aligned_cols=49  Identities=29%  Similarity=0.379  Sum_probs=44.2

Q ss_pred             CcccCCCCeeehhhhcCCCCceeEEEEcCc-EEEEEEcHHHHHHHHHhhH
Q psy8827           1 MHAYEDKGSFGELALLYNMPRAATIKATST-GSLWAMDRKTFKQIVLKSA   49 (82)
Q Consensus         1 v~~l~~G~~FGE~al~~~~~r~atv~a~~~-~~~~~l~~~~f~~ll~~~~   49 (82)
                      ++.++.||+|||-+|+....|+|+++|..+ +.|+.|+|+.|.+++....
T Consensus       339 lr~l~kGd~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~  388 (732)
T KOG0614|consen  339 LRTLNKGDYFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLE  388 (732)
T ss_pred             HhhccccchhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHH
Confidence            357899999999999999999999999988 9999999999999995443

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=98.33  E-value=2e-06  Score=48.81  Aligned_cols=52  Identities=27%  Similarity=0.254  Sum_probs=44.6

Q ss_pred             cccCCCCeeehhhhc--CCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827           2 HAYEDKGSFGELALL--YNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR   53 (82)
Q Consensus         2 ~~l~~G~~FGE~al~--~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~   53 (82)
                      ..+++|++||+.+++  ...+.+.++.+.++|.++.++.++|...+...+....
T Consensus        61 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  114 (120)
T smart00100       61 GILGPGDFFGELALLTNSRRAASATAVALELATLLRIDFRDFLQLLQENPQLLL  114 (120)
T ss_pred             EeecCCceechhhhccCCCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHH
Confidence            457899999999999  3467888999999999999999999999988876533

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>PLN02868 acyl-CoA thioesterase family protein

Probab=97.80  E-value=3.6e-05  Score=54.35  Aligned_cols=45  Identities=18%  Similarity=0.100  Sum_probs=39.7

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhh
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKS   48 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~   48 (82)
                      ..+++|++||+.  +.+.+++++++|.++|+++.++++.|+.+....
T Consensus        74 ~~l~~Gd~fG~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~  118 (413)
T PLN02868         74 FLLKRYDYFGYG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKS  118 (413)
T ss_pred             EEeCCCCEeehh--hCCCCcccEEEECCCEEEEEEcHHHHhhhcccc
Confidence            467999999985  688999999999999999999999999887433

>KOG2968|consensus

Probab=97.49  E-value=7.9e-05  Score=57.22  Aligned_cols=49  Identities=22%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHH
Q psy8827           3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFK   51 (82)
Q Consensus         3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~   51 (82)
                      ..+||+.+|-++++.|.|-..+++|.++|.+..+++++|.+++.+++..
T Consensus       437 ~v~pG~ivgyla~lt~e~S~~tirArsdt~v~~isrs~l~~~~~~~p~I  485 (1158)
T KOG2968|consen  437 VVGPGEIVGYLAILTNEPSFITIRARSDTRVLFISRSDLERFLDAEPLI  485 (1158)
T ss_pred             EecCCceechhhhhcCCcceEEEEEecceEEEEeeHHHHHHHHHhCceE
Confidence            5789999999999999999999999999999999999999999988743

>KOG2968|consensus

Probab=97.36  E-value=0.00026  Score=54.52  Aligned_cols=53  Identities=23%  Similarity=0.283  Sum_probs=48.5

Q ss_pred             CcccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827           1 MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR   53 (82)
Q Consensus         1 v~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~   53 (82)
                      ++.++.||.+|+...+.+.||..|+.|+.++++..|+..-|..+..++|..-.
T Consensus       551 ~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~  603 (1158)
T KOG2968|consen  551 VGEYGRGDLIGEVEMLTKQPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVT  603 (1158)
T ss_pred             hhhccCcceeehhHHhhcCCccceEEEEeehhhhhccHHHHHHHHHhccHHHH
Confidence            46789999999999999999999999999999999999999999988886543

>KOG2378|consensus

Probab=97.30  E-value=0.00023  Score=51.28  Aligned_cols=44  Identities=32%  Similarity=0.544  Sum_probs=38.8

Q ss_pred             CCCeeehhhhcCCCCceeEEEE-cCcEEEEEEcHHHHHHHHHhhH
Q psy8827           6 DKGSFGELALLYNMPRAATIKA-TSTGSLWAMDRKTFKQIVLKSA   49 (82)
Q Consensus         6 ~G~~FGE~al~~~~~r~atv~a-~~~~~~~~l~~~~f~~ll~~~~   49 (82)
                      .||-||.+++..+.||.||++. ..+|.++++++.+|.+|+.+..
T Consensus         1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~vE   45 (573)
T KOG2378|consen    1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVE   45 (573)
T ss_pred             CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhhh
Confidence            4999999999999999999775 4569999999999999996543

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.16  E-value=0.0011  Score=48.86  Aligned_cols=50  Identities=12%  Similarity=0.177  Sum_probs=44.6

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFK   51 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~   51 (82)
                      ..+..||.||-.+++.+.+-.-.+.|.+|+-++.|+++.|.++..+++..
T Consensus        70 ~~~~~gdlFg~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f  119 (610)
T COG2905          70 DRLAAGDLFGFSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEF  119 (610)
T ss_pred             eeeccCccccchhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHH
Confidence            56889999999999999888888889999999999999999999776543

>KOG0501|consensus

Probab=94.79  E-value=0.0098  Score=44.67  Aligned_cols=50  Identities=16%  Similarity=0.153  Sum_probs=40.6

Q ss_pred             CcccCCCCeeehhhhcCCC--CceeEEEEcCcEEEEEEcHHHHHHHHHhhHH
Q psy8827           1 MHAYEDKGSFGELALLYNM--PRAATIKATSTGSLWAMDRKTFKQIVLKSAF   50 (82)
Q Consensus         1 v~~l~~G~~FGE~al~~~~--~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~   50 (82)
                      |++|++||.||..-.-.+.  ...|.|+|+|.|.+-.|.|+.+.+++.-+..
T Consensus       609 VAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtA  660 (971)
T KOG0501|consen  609 VAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTA  660 (971)
T ss_pred             EEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHH
Confidence            4789999999987555443  3457899999999999999999999976544

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=91.41  E-value=0.66  Score=30.46  Aligned_cols=46  Identities=7%  Similarity=0.008  Sum_probs=35.7

Q ss_pred             CCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHH
Q psy8827           5 EDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAF   50 (82)
Q Consensus         5 ~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~   50 (82)
                      ...-.||=...+.+.......+|.++|+...++.++|.+++.+...
T Consensus        66 ~aP~IlGl~~~~~~~~~~~~l~ae~~c~~~~i~~~~~~~iie~~~L  111 (207)
T PRK11832         66 QAPYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQTITLIEQNQL  111 (207)
T ss_pred             cCCeEeecccccCCCCceEEEEEcCccEEEEeeHHHHHHHHHHhch
Confidence            3445566655556666667899999999999999999999987653

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=86.93  E-value=2.3  Score=26.70  Aligned_cols=35  Identities=17%  Similarity=0.159  Sum_probs=29.7

Q ss_pred             CCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHH
Q psy8827          18 NMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKK   52 (82)
Q Consensus        18 ~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~   52 (82)
                      ++.-..|++|.++|+.+..+|+.+..++.+.+..+
T Consensus        89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~  123 (153)
T PF04831_consen   89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA  123 (153)
T ss_pred             CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH
Confidence            34557899999999999999999999998876543

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
1cx4_A	305	Crystal Structure Of A Deletion Mutant Of The Type		1e-22
3tnq_A	416	Structure And Allostery Of The Pka Riib Tetrameric		4e-22
3tnp_B	416	Structure And Allostery Of The Pka Riib Tetrameric		4e-22
2qvs_B	310	Crystal Structure Of Type Iia Holoenzyme Of Camp-De		4e-22
3idb_B	161	Crystal Structure Of (108-268)riib:c Holoenzyme Of		8e-18
3idc_B	164	Crystal Structure Of (102-265)riib:c Holoenzyme Of		3e-17
3of1_A	246	Crystal Structure Of Bcy1, The Yeast Regulatory Sub		5e-17
4din_B	381	Novel Localization And Quaternary Structure Of The		2e-15
1ne4_A	283	Crystal Structure Of Rp-Camp Binding R1a Subunit Of		2e-15
1rl3_A	288	Crystal Structure Of Camp-free R1a Subunit Of Pka L		2e-15
2qcs_B	291	A Complex Structure Between The Catalytic And Regul		3e-15
3fhi_B	154	Crystal Structure Of A Complex Between The Catalyti		3e-12
3pvb_B	160	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		2e-11
3shr_A	299	Crystal Structure Of Cgmp-Dependent Protein Kinase		1e-09
3ocp_A	139	Crystal Structure Of Camp Bound Cgmp-Dependent Prot		3e-07

>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta Regulatory Subunit Of Camp-Dependent Protein Kinase Length = 305

Iteration: 1
 Score =  101 bits (251), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 58/68 (85%)
Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct: 102 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 161
Query: 64  PMLKSLQV 71
           P LKSL+V
Sbjct: 162 PFLKSLEV 169

>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric Holoenzyme Length = 416

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 58/68 (85%)
Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN P+AATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct: 213 YDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272
Query: 64  PMLKSLQV 71
           P LKSL+V
Sbjct: 273 PFLKSLEV 280

>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric Holoenzyme Length = 416

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 58/68 (85%)
Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN P+AATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct: 213 YDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272
Query: 64  PMLKSLQV 71
           P LKSL+V
Sbjct: 273 PFLKSLEV 280

>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent Protein Kinase Length = 310

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 58/68 (85%)
Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN PRAATI ATS GSLW +DR TF++I++K+  KKRKM+E  I++V
Sbjct: 106 YDNRGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESV 165
Query: 64  PMLKSLQV 71
           P+ KSL++
Sbjct: 166 PLFKSLEM 173

>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp- Dependent Protein Kinase Length = 161

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 47/54 (87%)
Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE 57
           Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE
Sbjct: 106 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159

>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp- Dependent Protein Kinase Length = 164

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 46/53 (86%)
Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
           Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMY
Sbjct: 112 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 164

>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of Pka Length = 246

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 9   SFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKS 68
           SFGELAL+YN PRAAT+ ATS   LWA+DR TF++I+L S+FKKR MY+ L+ ++P+LKS
Sbjct: 76  SFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKS 135
Query: 69  L 69
           L
Sbjct: 136 L 136

>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri Beta Holoenzyme Length = 381

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 8   GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLK 67
           GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMYE+ +  V +L+
Sbjct: 198 GSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 257
Query: 68  SLQ 70
           SL+
Sbjct: 258 SLE 260

>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp- Dependent Protein Kinase Length = 283

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 8   GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLK 67
           GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMYE+ +  V +L+
Sbjct: 103 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 162
Query: 68  SL 69
           SL
Sbjct: 163 SL 164

>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka Length = 288

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 8   GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLK 67
           GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMYE+ +  V +L+
Sbjct: 105 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 164
Query: 68  SL 69
           SL
Sbjct: 165 SL 166

>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 291

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 47/62 (75%)
Query: 8   GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLK 67
           GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMYE+ +  V +L+
Sbjct: 107 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILE 166
Query: 68  SL 69
           SL
Sbjct: 167 SL 168

>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 154

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 8   GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
           GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMY
Sbjct: 106 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 154

>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 160

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 37/48 (77%)
Query: 8   GSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM 55
           GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKM
Sbjct: 113 GSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 160

>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals Novel Site Of Interchain Communication Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 10  FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSL 69
           FGELA+LYN  R AT+K      LWA+DR+ F+ I++++   K   Y + + +VP  +SL
Sbjct: 109 FGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSL 168

>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein Kinase(92-227) Length = 139

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 10  FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
           FGELA+LYN  R AT+K      LWA+DR+ F+ I++++   K   Y
Sbjct: 93  FGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	4e-25
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	1e-24
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	1e-24
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	6e-20
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	3e-11
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	2e-18
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	1e-11
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	3e-18
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	2e-06
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	1e-17
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	4e-13
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	7e-16
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	4e-11
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	1e-15
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	9e-12
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	9e-12
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	3e-09
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	1e-06
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	1e-05
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	3e-05
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	6e-05
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	2e-04
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	3e-04
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	4e-04

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score = 90.5 bits (225), Expect = 4e-25
 Identities = 36/56 (64%), Positives = 47/56 (83%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
           Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMYE  
Sbjct: 106 YDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESF 161

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 88.5 bits (220), Expect = 1e-24
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
                 FGELA+LYN  R AT+K      LWA+DR+ F+ I++++   K   Y
Sbjct: 87  MGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY 139

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 89.0 bits (221), Expect = 1e-24
 Identities = 27/53 (50%), Positives = 39/53 (73%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
             + GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMY
Sbjct: 102 VGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 154

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 80.9 bits (199), Expect = 6e-20
 Identities = 41/66 (62%), Positives = 56/66 (84%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
           Y+++GSFGELAL+YN P+AATI ATS G+LW +DR TF++I++K+  KKRKMYE  I+++
Sbjct: 213 YDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL 272

Query: 64  PMLKSL 69
           P LKSL
Sbjct: 273 PFLKSL 278

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 56.3 bits (135), Expect = 3e-11
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
                 FGELAL+ N PRAA+  A  T    AMD + F++++       ++     
Sbjct: 342 CFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 397

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 74.9 bits (184), Expect = 2e-18
 Identities = 39/66 (59%), Positives = 51/66 (77%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
                SFGELAL+YN PRAAT+ ATS   LWA+DR TF++I+L S+FKKR MY+ L+ ++
Sbjct: 71  SGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSM 130

Query: 64  PMLKSL 69
           P+LKSL
Sbjct: 131 PVLKSL 136

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
            +D   FGE+ALL ++PR AT+ AT    +  + +  F++++
Sbjct: 190 LKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 76.1 bits (186), Expect = 3e-18
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 8   GSFGELALLYNMPRAATIKATS-TGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPML 66
             FG+LAL+ + PRAA+I           +D++ F +I+        ++ E     V +L
Sbjct: 407 DDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEHD-QDVLVL 465

Query: 67  KSL 69
           + +
Sbjct: 466 EKV 468

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 42.6 bits (99), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
                +FGE ++L N PR ATI    +  L  ++++ FK +  K       + 
Sbjct: 113 LGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 73.8 bits (181), Expect = 1e-17
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
                 FGELA+LYN  R AT+K      LWA+DR+ F+ I++++   K   Y + + +V
Sbjct: 103 MGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSV 162

Query: 64  PMLKSL 69
           P  +SL
Sbjct: 163 PTFQSL 168

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 61.1 bits (148), Expect = 4e-13
 Identities = 15/66 (22%), Positives = 21/66 (31%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
                 FGE AL     R A + A    +   +DR +FK ++        K YE      
Sbjct: 227 LGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKA 286

Query: 64  PMLKSL 69
                 
Sbjct: 287 KYEAEA 292

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 68.9 bits (168), Expect = 7e-16
 Identities = 32/66 (48%), Positives = 48/66 (72%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             + GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMYE+ +  V
Sbjct: 103 VGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKV 162

Query: 64  PMLKSL 69
            +L+SL
Sbjct: 163 SILESL 168

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 55.4 bits (133), Expect = 4e-11
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV--LKSAFKKR-KMYEKLI 60
                 FGE+ALL N P+AAT+ A        +DR  F++++       K+  + Y   +
Sbjct: 227 LGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNSFV 286

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 69.0 bits (168), Expect = 1e-15
 Identities = 32/66 (48%), Positives = 48/66 (72%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV 63
             + GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMYE+ +  V
Sbjct: 194 ISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKV 253

Query: 64  PMLKSL 69
            +L+SL
Sbjct: 254 SILESL 259

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 57.8 bits (139), Expect = 9e-12
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV--LKSAFKKR-KMYEKLI 60
                 FGE+ALL N PRAAT+ A        +DR  F++++       K+  + Y   I
Sbjct: 318 LGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 55.5 bits (134), Expect = 9e-12
 Identities = 5/43 (11%), Positives = 13/43 (30%), Gaps = 1/43 (2%)

Query: 4   YEDKGSFGELALLYNMPRAATIKATSTGS-LWAMDRKTFKQIV 45
                SFG    L        ++          + ++ + +I+
Sbjct: 81  LFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRIL 123

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 48.8 bits (117), Expect = 3e-09
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 10  FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
           FGE+AL+   PR+AT+ A +T SL ++    F+ +   S        +  
Sbjct: 79  FGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTA 128

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 10  FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLI 60
            GE++++  MPR+A+  A+       + R    Q++        K+  +L+
Sbjct: 114 IGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLL 164

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 10  FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
            GE+ALL + PR+AT+      + W   R  F  +V      +R + 
Sbjct: 87  VGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLR 133

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 38.4 bits (90), Expect = 3e-05
 Identities = 5/36 (13%), Positives = 16/36 (44%)

Query: 10  FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV 45
           FG  +L+      ++ +AT    +  ++    +++ 
Sbjct: 84  FGVSSLIKPYHYTSSARATKPVRVVDINGARLREMS 119

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 37.6 bits (88), Expect = 6e-05
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 10  FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK 47
            GEL+L    PR AT  A +   L A+     +  +  
Sbjct: 80  IGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNV 117

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 7   KGS-FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQI 44
            GS FGE+ LL    R A+++A +   L+++    F ++
Sbjct: 138 DGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEV 176

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 7   KGS-FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIV-----LKSAFKK--RKMYEK 58
            GS FGE+ LL    R A++K  +  +L+++  + F Q++     ++   ++   +   +
Sbjct: 138 DGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLTR 197

Query: 59  L 59
           +
Sbjct: 198 I 198

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 10  FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLK 47
            GE A+L +  R+A+++A +      + R+ F+ I+ +
Sbjct: 81  VGETAVLAHQERSASVRALTPVRTLMLHREHFELILRR 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.6
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.58
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.57
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.57
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.53
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.37
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.33
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.33
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.32
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.32
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.29
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.28
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.28
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.28
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.28
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.27
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.26
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.26
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.25
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.24
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.23
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.22
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.22
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.22
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.21
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.21
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.21
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.21
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.2
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.18
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.18
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.18
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.17
3b02_A	195	Transcriptional regulator, CRP family; structural	99.17
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.16
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.16
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.15
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.14
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.14
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.14
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.12
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.05
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.02
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.0
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	98.98
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	98.92
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	98.9
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	98.9
1ft9_A	222	Carbon monoxide oxidation system transcription reg	98.84
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	98.81
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	98.8
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	98.58
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	92.09

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.60  E-value=2.8e-15  Score=98.48  Aligned_cols=76  Identities=33%  Similarity=0.589  Sum_probs=71.3

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY   77 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~   77 (82)
                      ..+++|++|||++++.+.||++||+|.++|++|.|++++|..++.+.+..++..+..+++++++|+.+++.++...
T Consensus       101 ~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l  176 (299)
T 3shr_A          101 CTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKL  176 (299)
T ss_dssp             EEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHH
T ss_pred             EEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHH
Confidence            5689999999999999999999999999999999999999999999998888899999999999999999887543

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.58  E-value=3.2e-15  Score=95.11  Aligned_cols=77  Identities=51%  Similarity=0.763  Sum_probs=71.0

Q ss_pred             CcccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827           1 MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY   77 (82)
Q Consensus         1 v~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~   77 (82)
                      +..+++|++|||++++.+.||++|++|.++|++|.+++++|..++.+.+..++.....++++++.|+.|++.++...
T Consensus        68 ~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l  144 (246)
T 3of1_A           68 VNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKL  144 (246)
T ss_dssp             CEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHH
T ss_pred             EEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHH
Confidence            35689999999999999999999999999999999999999999999988888888999999999999999876443

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.57  E-value=6.7e-15  Score=100.65  Aligned_cols=76  Identities=42%  Similarity=0.763  Sum_probs=71.3

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY   77 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~   77 (82)
                      ..+++|++|||++++.+.||++|++|.++|++|.|++++|++++.+.+..+++.+..++++++.|..+++.++...
T Consensus       192 ~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l  267 (381)
T 4din_B          192 TNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTV  267 (381)
T ss_dssp             EEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHH
T ss_pred             eeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999989999999999999999998877543

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.57  E-value=2.3e-14  Score=93.52  Aligned_cols=76  Identities=42%  Similarity=0.766  Sum_probs=71.1

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY   77 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~   77 (82)
                      ..+++|++|||.+++.+.||++|++|.++|++|.+++++|..++.+++.........+++++++|..|++.++...
T Consensus       101 ~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l  176 (291)
T 2qcs_B          101 TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTV  176 (291)
T ss_dssp             EEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHH
T ss_pred             EEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHH
Confidence            5689999999999999999999999999999999999999999999998888899999999999999999877543

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.53  E-value=8.5e-15  Score=101.33  Aligned_cols=76  Identities=55%  Similarity=0.944  Sum_probs=71.0

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY   77 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~   77 (82)
                      ..+++|++|||++++.+.||++||+|.++|++|.|++++|.+++.+.+..++..+..+++++++|..|++.++...
T Consensus       211 ~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L  286 (416)
T 3tnp_B          211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKV  286 (416)
T ss_dssp             EEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHH
T ss_pred             EEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHH
Confidence            4689999999999999999999999999999999999999999999998888888899999999999999887554

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.37  E-value=1.6e-12  Score=76.40  Aligned_cols=60  Identities=8%  Similarity=0.112  Sum_probs=53.3

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHh
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLID   61 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~   61 (82)
                      ..+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++.........+.+
T Consensus        76 ~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~  135 (142)
T 3mdp_A           76 CSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA  135 (142)
T ss_dssp             EEECTTCEECGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             EEecCCCEechHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999999999998877655555543

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.33  E-value=6e-13  Score=80.47  Aligned_cols=56  Identities=64%  Similarity=1.105  Sum_probs=49.8

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE   57 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~   57 (82)
                      ..+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++..+++.+.
T Consensus       104 ~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~  159 (161)
T 3idb_B          104 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE  159 (161)
T ss_dssp             EEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred             EEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence            46889999999999999999999999999999999999999999999876654443

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.33  E-value=1.1e-12  Score=77.54  Aligned_cols=54  Identities=37%  Similarity=0.646  Sum_probs=44.5

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM   55 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~   55 (82)
                      ..+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++..+++.
T Consensus        85 ~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~  138 (139)
T 3ocp_A           85 CTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE  138 (139)
T ss_dssp             EEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred             EEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence            468999999999999999999999999999999999999999999998876654

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.32  E-value=4e-12  Score=79.25  Aligned_cols=61  Identities=23%  Similarity=0.377  Sum_probs=53.7

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDA   62 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~   62 (82)
                      ..+++|++|||.+++.+.||+++++|.++|+++.+++++|..++.++|............+
T Consensus       134 ~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r  194 (198)
T 2ptm_A          134 TSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR  194 (198)
T ss_dssp             EEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred             EEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999998766555544443

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.32  E-value=4.3e-12  Score=79.84  Aligned_cols=62  Identities=13%  Similarity=0.100  Sum_probs=55.4

Q ss_pred             cccCCCCeeehhhhcCCC--CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhC
Q psy8827           2 HAYEDKGSFGELALLYNM--PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV   63 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~--~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~   63 (82)
                      ..+++|++|||.+++.+.  +|+++|+|.++|+++.+++++|..++.++|.........+.+.+
T Consensus       137 ~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l  200 (212)
T 3ukn_A          137 AILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL  200 (212)
T ss_dssp             EEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred             EEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence            568999999999999998  99999999999999999999999999999988776666665544

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.29  E-value=1.5e-11  Score=78.33  Aligned_cols=80  Identities=8%  Similarity=-0.041  Sum_probs=66.4

Q ss_pred             cccCCCCeeehhhhcCCCC-ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH-------HHHHHHHhhCccccCCCHHH
Q psy8827           2 HAYEDKGSFGELALLYNMP-RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR-------KMYEKLIDAVPMLKSLQVMV   73 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~-r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~-------~~~~~~l~~~~~~~~l~~~~   73 (82)
                      ..+++|++|||.+++.+.+ ++++++|.++|+++.+++++|..++.+++....       +........+..+...+..+
T Consensus        87 ~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~  166 (232)
T 1zyb_A           87 EQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKS  166 (232)
T ss_dssp             EEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHH
T ss_pred             EEccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence            4678999999999999998 999999999999999999999999988875543       23444566677788889999


Q ss_pred             HHHHHHhh
Q psy8827          74 FFLYLVCA   81 (82)
Q Consensus        74 ~~~~~~~~   81 (82)
                      |++.++..
T Consensus       167 Rl~~~L~~  174 (232)
T 1zyb_A          167 KIIRFFLS  174 (232)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            98866543

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.28  E-value=3.5e-12  Score=80.54  Aligned_cols=79  Identities=14%  Similarity=0.126  Sum_probs=62.9

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~   74 (82)
                      ..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.++|.....       ......+.+..+...+..+|
T Consensus        73 ~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R  152 (227)
T 3d0s_A           73 TIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGR  152 (227)
T ss_dssp             EEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             EEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            46889999999999999999999999999999999999999999887755432       22333344455666788888


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.+++
T Consensus       153 l~~~L~  158 (227)
T 3d0s_A          153 VAKQLL  158 (227)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876554

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.28  E-value=6.7e-12  Score=79.47  Aligned_cols=79  Identities=10%  Similarity=-0.026  Sum_probs=63.1

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~   74 (82)
                      ..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.++|.....       ......+.+..+...+..+|
T Consensus        77 ~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R  156 (232)
T 2gau_A           77 RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGR  156 (232)
T ss_dssp             EEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             EEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            46899999999999999999999999999999999999999999888765432       22333444455666788888


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.+++
T Consensus       157 l~~~L~  162 (232)
T 2gau_A          157 LAETLL  162 (232)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876554

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.28  E-value=8.6e-12  Score=79.20  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~   74 (82)
                      ..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.+++.....       ......+.+..+...+..+|
T Consensus        78 ~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R  157 (237)
T 3fx3_A           78 SVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQR  157 (237)
T ss_dssp             EEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred             EEeCCCCEechHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            46789999999999999999999999999999999999999999888765432       33344555666778889999


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.+++
T Consensus       158 l~~~L~  163 (237)
T 3fx3_A          158 VAEFLL  163 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            886654

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.28  E-value=2.9e-12  Score=76.99  Aligned_cols=54  Identities=48%  Similarity=0.906  Sum_probs=48.2

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM   55 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~   55 (82)
                      ..+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++..++++
T Consensus       100 ~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~  153 (154)
T 3pna_A          100 TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM  153 (154)
T ss_dssp             EEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred             EEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence            468999999999999999999999999999999999999999999988765543

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.27  E-value=1.9e-11  Score=72.61  Aligned_cols=64  Identities=16%  Similarity=0.273  Sum_probs=55.5

Q ss_pred             cccCCCCeeehhhhcCCCC-ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCcc
Q psy8827           2 HAYEDKGSFGELALLYNMP-RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPM   65 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~-r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~   65 (82)
                      ..+++|++|||.+++.+.+ ++++++|.++|+++.+++++|..++.+++.........+.+++..
T Consensus        79 ~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~  143 (154)
T 2z69_A           79 EVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQ  143 (154)
T ss_dssp             EEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTC
T ss_pred             EEccCCCeeccHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence            5688999999999999998 999999999999999999999999999988776666655554433

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.26  E-value=1.7e-11  Score=71.94  Aligned_cols=61  Identities=25%  Similarity=0.333  Sum_probs=53.9

Q ss_pred             ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhC
Q psy8827           3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAV   63 (82)
Q Consensus         3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~   63 (82)
                      .+++|++|||.+++.+.+++++++|.++|+++.+++++|.+++.+++...........+++
T Consensus        72 ~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~  132 (138)
T 1vp6_A           72 ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR  132 (138)
T ss_dssp             EECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred             eECCCCEeeehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence            5789999999999999999999999999999999999999999999887766655555543

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.26  E-value=9.9e-12  Score=77.28  Aligned_cols=79  Identities=18%  Similarity=0.137  Sum_probs=60.4

Q ss_pred             cccCCCCeeehhhhcCCC----CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCC
Q psy8827           2 HAYEDKGSFGELALLYNM----PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQ   70 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~----~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~   70 (82)
                      ..++||++|||.+++.+.    |++++++|.++|+++.+++++|..++.++|......       .......+..+...+
T Consensus        57 ~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~l~~~~  136 (207)
T 2oz6_A           57 GYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLD  136 (207)
T ss_dssp             EEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            467899999999999998    899999999999999999999999998887654322       223333444556678


Q ss_pred             HHHHHHHHHh
Q psy8827          71 VMVFFLYLVC   80 (82)
Q Consensus        71 ~~~~~~~~~~   80 (82)
                      ..+|++.+++
T Consensus       137 ~~~Rl~~~L~  146 (207)
T 2oz6_A          137 VTGRVARTLL  146 (207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888776553

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.25  E-value=6.7e-12  Score=78.50  Aligned_cols=79  Identities=16%  Similarity=0.168  Sum_probs=60.1

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH-------HHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY-------EKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~-------~~~l~~~~~~~~l~~~~~   74 (82)
                      ..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.+++.......       ....+.+..+...+..+|
T Consensus        66 ~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~R  145 (216)
T 4ev0_A           66 ALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNR  145 (216)
T ss_dssp             EEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            4689999999999999999999999999999999999999999988876543322       222333334444556677


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.++.
T Consensus       146 l~~~L~  151 (216)
T 4ev0_A          146 VAYALL  151 (216)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.24  E-value=1.4e-11  Score=76.73  Aligned_cols=79  Identities=18%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             cccCCCCeeehhhhcCCC-CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHHH
Q psy8827           2 HAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVMV   73 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~-~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~~   73 (82)
                      ..++||++|||.+++.+. |++++++|.++|+++.+++++|..++.+++......       .......+..+...+..+
T Consensus        63 ~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  142 (210)
T 3ryp_A           63 SYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTG  142 (210)
T ss_dssp             EEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             EEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence            457899999999999988 899999999999999999999999998877554322       223334445556677888


Q ss_pred             HHHHHHh
Q psy8827          74 FFLYLVC   80 (82)
Q Consensus        74 ~~~~~~~   80 (82)
                      |++.++.
T Consensus       143 Rl~~~L~  149 (210)
T 3ryp_A          143 RIAQTLL  149 (210)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8775554

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.23  E-value=1.6e-11  Score=72.52  Aligned_cols=55  Identities=20%  Similarity=0.152  Sum_probs=49.2

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY   56 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~   56 (82)
                      ..+++|++|||.+++.+.|++++++|.++|+++.+++++|.+++.+++.......
T Consensus        72 ~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~  126 (149)
T 2pqq_A           72 AVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL  126 (149)
T ss_dssp             EEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHH
T ss_pred             EEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHH
Confidence            4688999999999999999999999999999999999999999998876654433

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.22  E-value=1.3e-11  Score=76.66  Aligned_cols=55  Identities=18%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY   56 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~   56 (82)
                      ..++||++|||.+++.+.|++++++|.++|+++.+++++|.+++.+++.......
T Consensus       106 ~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~  160 (187)
T 3gyd_A          106 AKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL  160 (187)
T ss_dssp             EEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred             EEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence            4689999999999999999999999999999999999999999998887665444

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.22  E-value=3.9e-11  Score=75.60  Aligned_cols=79  Identities=13%  Similarity=0.098  Sum_probs=62.8

Q ss_pred             cccCCCCeeehhhhcCCC-CceeEEEEcCcEEEEEEcHHHHHHHHHhh-----HHHHHH-------HHHHHHhhCccccC
Q psy8827           2 HAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAMDRKTFKQIVLKS-----AFKKRK-------MYEKLIDAVPMLKS   68 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~-~r~atv~a~~~~~~~~l~~~~f~~ll~~~-----~~~~~~-------~~~~~l~~~~~~~~   68 (82)
                      ..++||++|||.+++.+. |++++++|.++|+++.+++++|.+++.++     +.....       ......+.+..+..
T Consensus        78 ~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~  157 (230)
T 3iwz_A           78 GYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASRLAF  157 (230)
T ss_dssp             EEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            468999999999999985 79999999999999999999999999988     765432       23334455556667


Q ss_pred             CCHHHHHHHHHh
Q psy8827          69 LQVMVFFLYLVC   80 (82)
Q Consensus        69 l~~~~~~~~~~~   80 (82)
                      .+..+|++.++.
T Consensus       158 ~~~~~Rl~~~L~  169 (230)
T 3iwz_A          158 LDVTDRIVRTLH  169 (230)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            788888775544

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.22  E-value=1.3e-11  Score=77.29  Aligned_cols=56  Identities=21%  Similarity=0.395  Sum_probs=49.7

Q ss_pred             ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHH
Q psy8827           3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK   58 (82)
Q Consensus         3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~   58 (82)
                      .+++|++|||.+++.+.+|+++|+|.++|+++.+++++|..++.++|.........
T Consensus       135 ~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~  190 (202)
T 3bpz_A          135 KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV  190 (202)
T ss_dssp             EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred             EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999888665444333

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.21  E-value=2.1e-11  Score=76.69  Aligned_cols=79  Identities=5%  Similarity=0.077  Sum_probs=54.4

Q ss_pred             cccCCCCeeehhhhcCCC-CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHHH
Q psy8827           2 HAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVMV   73 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~-~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~~   73 (82)
                      ..+++|++|||.+++.+. +++++++|.++|+++.+++++|.+++.+++......       .......+..+...+..+
T Consensus        66 ~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~  145 (213)
T 1o5l_A           66 DEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTKTLRE  145 (213)
T ss_dssp             EEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred             EEecCCCEeeeHHHhcCCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence            468999999999999886 999999999999999999999999998887654322       223334445566677777


Q ss_pred             HHHHHHh
Q psy8827          74 FFLYLVC   80 (82)
Q Consensus        74 ~~~~~~~   80 (82)
                      |++.+++
T Consensus       146 Rl~~~L~  152 (213)
T 1o5l_A          146 KLMNFLV  152 (213)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            7776554

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.21  E-value=1.6e-11  Score=83.83  Aligned_cols=52  Identities=31%  Similarity=0.379  Sum_probs=48.0

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR   53 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~   53 (82)
                      ..+++|++|||.+++.+.||++||+|.++|.++.|++++|.+++...+....
T Consensus       316 ~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~  367 (381)
T 4din_B          316 GRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILK  367 (381)
T ss_dssp             EEECTTCEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHH
T ss_pred             EEeCCCCEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHH
Confidence            4689999999999999999999999999999999999999999998876543

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.21  E-value=2.3e-11  Score=78.87  Aligned_cols=79  Identities=18%  Similarity=0.127  Sum_probs=62.6

Q ss_pred             cccCCCCeeehhhhcCCC-CceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHH
Q psy8827           2 HAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMV   73 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~-~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~   73 (82)
                      ..++||++|||.+++.+. |++++++|.++|+++.+++++|..++.+++.....       ........+..+...+..+
T Consensus       113 ~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~  192 (260)
T 3kcc_A          113 SYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLLVTG  192 (260)
T ss_dssp             EEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             EEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            467899999999999998 89999999999999999999999999887655432       2333444455566678888


Q ss_pred             HHHHHHh
Q psy8827          74 FFLYLVC   80 (82)
Q Consensus        74 ~~~~~~~   80 (82)
                      |++.+++
T Consensus       193 Rla~~Ll  199 (260)
T 3kcc_A          193 RIAQTLL  199 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8876554

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.21  E-value=3.5e-11  Score=72.00  Aligned_cols=55  Identities=11%  Similarity=0.141  Sum_probs=49.5

Q ss_pred             cccCCCCeeehhhhcCC--CCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYN--MPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY   56 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~--~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~   56 (82)
                      ..+++|++|||.+++.+  .+++++++|.++|+++.+++++|.+++.+++.......
T Consensus        89 ~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~  145 (160)
T 4f8a_A           89 AILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFS  145 (160)
T ss_dssp             EEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred             EEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999998  79999999999999999999999999999987655433

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.20  E-value=1.3e-11  Score=80.44  Aligned_cols=52  Identities=29%  Similarity=0.361  Sum_probs=48.3

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR   53 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~   53 (82)
                      ..+++|++|||.+++.+.||++|++|.++|.++.|++++|.+++.+++....
T Consensus       225 ~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~  276 (291)
T 2qcs_B          225 GRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILK  276 (291)
T ss_dssp             EEECTTCEECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred             EEeCCCCEecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHH
Confidence            4689999999999999999999999999999999999999999998887543

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.18  E-value=1.8e-11  Score=77.63  Aligned_cols=50  Identities=28%  Similarity=0.471  Sum_probs=46.9

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFK   51 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~   51 (82)
                      ..+++|++|||.+++.+.||+++|+|.++|+++.|++++|.+++...+..
T Consensus       188 ~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~  237 (246)
T 3of1_A          188 NKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDV  237 (246)
T ss_dssp             EEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHH
T ss_pred             EEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHH
Confidence            46899999999999999999999999999999999999999999887754

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.18  E-value=2.1e-11  Score=91.42  Aligned_cols=46  Identities=26%  Similarity=0.426  Sum_probs=43.1

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCc-EEEEEEcHHHHHHHHHh
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATST-GSLWAMDRKTFKQIVLK   47 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~-~~~~~l~~~~f~~ll~~   47 (82)
                      ..+++||+|||++++.+.||.|||+|.++ |+++++++++|.+++.+
T Consensus       401 ~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~  447 (999)
T 4f7z_A          401 CTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD  447 (999)
T ss_dssp             EEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred             EEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence            56899999999999999999999999885 99999999999999954

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.18  E-value=1.1e-11  Score=78.02  Aligned_cols=78  Identities=14%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             cccCCCCeeehhhhcCCCC-ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHH-------HHHhhCccccCCCHHH
Q psy8827           2 HAYEDKGSFGELALLYNMP-RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE-------KLIDAVPMLKSLQVMV   73 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~-r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~-------~~l~~~~~~~~l~~~~   73 (82)
                      ..++||++|||.+++.+.| ++++++|.++|+++.+++++|..++.+++........       .....+..+...+..+
T Consensus        76 ~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  155 (227)
T 3dkw_A           76 EVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATH  155 (227)
T ss_dssp             CEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            5688999999999999999 9999999999999999999999999877655433222       2223333344456667


Q ss_pred             HHHHHH
Q psy8827          74 FFLYLV   79 (82)
Q Consensus        74 ~~~~~~   79 (82)
                      |++.++
T Consensus       156 Rl~~~L  161 (227)
T 3dkw_A          156 RVVRYL  161 (227)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776544

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.17  E-value=1.4e-11  Score=76.08  Aligned_cols=78  Identities=8%  Similarity=0.011  Sum_probs=52.7

Q ss_pred             cccCCCCeeehh-hhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH-------HHHHHHHhhCccccCCCHHH
Q psy8827           2 HAYEDKGSFGEL-ALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR-------KMYEKLIDAVPMLKSLQVMV   73 (82)
Q Consensus         2 ~~l~~G~~FGE~-al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~-------~~~~~~l~~~~~~~~l~~~~   73 (82)
                      ..++||++|||+ +++.+.|++++++|.++|+++.+++++|.+++.+++....       +......+.+..+...+..+
T Consensus        74 ~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~  153 (194)
T 3dn7_A           74 QFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKFQHMYSKEE  153 (194)
T ss_dssp             EEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             EEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            457899999998 7889999999999999999999999999999987764432       12223334444555566667


Q ss_pred             HHHHHH
Q psy8827          74 FFLYLV   79 (82)
Q Consensus        74 ~~~~~~   79 (82)
                      |++.++
T Consensus       154 Rl~~~L  159 (194)
T 3dn7_A          154 QYHNFS  159 (194)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            766544

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.17  E-value=1.1e-10  Score=72.49  Aligned_cols=78  Identities=10%  Similarity=0.071  Sum_probs=57.5

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhH-HHHHHHHHHHHhhCccccCCCHHHHHHHHHh
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSA-FKKRKMYEKLIDAVPMLKSLQVMVFFLYLVC   80 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~   80 (82)
                      ..++||++||| +++.+.|++++++|.++|+++.+++++|..-+.... ..-..........+..+...+..+|++.+++
T Consensus        43 ~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~  121 (195)
T 3b02_A           43 RHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRAMDHEALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLL  121 (195)
T ss_dssp             EEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             EEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            46889999999 999999999999999999999999999972221111 1111234445555666777888888876654

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.16  E-value=1.6e-10  Score=86.65  Aligned_cols=46  Identities=30%  Similarity=0.434  Sum_probs=42.9

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhh
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKS   48 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~   48 (82)
                      +.+++|++||| +++++.||+|||+|.++|++|++++++|+.++.++
T Consensus       111 ~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~  156 (999)
T 4f7z_A          111 CTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY  156 (999)
T ss_dssp             EEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHH
T ss_pred             EEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhC
Confidence            56899999999 99999999999999999999999999999998654

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.16  E-value=7.9e-12  Score=81.95  Aligned_cols=51  Identities=24%  Similarity=0.230  Sum_probs=46.6

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKK   52 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~   52 (82)
                      ..+++|++|||.+++.+.||++||+|.++|.++.|++++|.+++.+++...
T Consensus       225 ~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~  275 (299)
T 3shr_A          225 RTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVS  275 (299)
T ss_dssp             EEEETTCEECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCC
T ss_pred             EEcCCCCEeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHH
Confidence            468899999999999999999999999999999999999999998766443

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.15  E-value=1.2e-10  Score=72.88  Aligned_cols=79  Identities=13%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             cccCCCCe--eehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHH
Q psy8827           2 HAYEDKGS--FGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVM   72 (82)
Q Consensus         2 ~~l~~G~~--FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~   72 (82)
                      ..++||++  |||.+++.+.|++++++|.++|+++.+++++|.+++.+++......       .......+..+...+..
T Consensus        70 ~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  149 (220)
T 3dv8_A           70 YRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLD  149 (220)
T ss_dssp             EEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             EecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            46789999  8999999999999999999999999999999999998887654322       22333444556667788


Q ss_pred             HHHHHHHh
Q psy8827          73 VFFLYLVC   80 (82)
Q Consensus        73 ~~~~~~~~   80 (82)
                      +|++.++.
T Consensus       150 ~Rl~~~L~  157 (220)
T 3dv8_A          150 KRVASFLL  157 (220)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776554

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.14  E-value=8.8e-11  Score=74.23  Aligned_cols=52  Identities=21%  Similarity=0.255  Sum_probs=47.7

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR   53 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~   53 (82)
                      ..++||++|||.+++.+.|++++++|.++|+++.+++++|..++.+++....
T Consensus        73 ~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~  124 (231)
T 3e97_A           73 GDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLW  124 (231)
T ss_dssp             EEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHH
T ss_pred             EecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence            4678999999999999999999999999999999999999999988776543

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.14  E-value=4.7e-11  Score=79.36  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=49.1

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK   58 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~   58 (82)
                      ..+++|++|||.+++.+.||++|++|.++|+++.|++++|.+++ +++.........
T Consensus        79 ~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~  134 (333)
T 4ava_A           79 ARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRT  134 (333)
T ss_dssp             EEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHH
T ss_pred             EEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999 777665444333

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.14  E-value=1.4e-10  Score=74.27  Aligned_cols=79  Identities=14%  Similarity=0.053  Sum_probs=61.7

Q ss_pred             cccCCCCeeehhhhcCCCC--ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCHH
Q psy8827           2 HAYEDKGSFGELALLYNMP--RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQVM   72 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~--r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~~   72 (82)
                      ..++||++|||.+++.+.|  ++++++|.++|+++.+++++|.+++.+++......       .......+..+...+..
T Consensus        87 ~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~  166 (243)
T 3la7_A           87 ALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMG  166 (243)
T ss_dssp             EEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred             EEecCCCEEcchHHhCCCCCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            4689999999999999886  56999999999999999999999998887654332       22233344456677888


Q ss_pred             HHHHHHHh
Q psy8827          73 VFFLYLVC   80 (82)
Q Consensus        73 ~~~~~~~~   80 (82)
                      +|++.+++
T Consensus       167 ~Rla~~L~  174 (243)
T 3la7_A          167 SRLVSFLL  174 (243)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88876654

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.12  E-value=3.5e-11  Score=83.23  Aligned_cols=52  Identities=33%  Similarity=0.341  Sum_probs=48.0

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKR   53 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~   53 (82)
                      ..+++|++|||++++.+.||++||+|.++|.++.|++++|.+++...+....
T Consensus       340 ~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~  391 (416)
T 3tnp_B          340 ARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMK  391 (416)
T ss_dssp             EEECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred             EEeCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHH
Confidence            5689999999999999999999999999999999999999999988876543

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.05  E-value=5.9e-10  Score=71.43  Aligned_cols=76  Identities=9%  Similarity=-0.000  Sum_probs=60.1

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~   74 (82)
                      ..++||++|||  ++.+. ++++++|.++|+++.+++++|..++.+++.....       ......+.+..+...+..+|
T Consensus        76 ~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~R  152 (250)
T 3e6c_C           76 YYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIR  152 (250)
T ss_dssp             EEECTTCEECC--CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             EEecCCCEEee--ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            46889999999  77777 9999999999999999999999999887654432       23334445556777888888


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.+++
T Consensus       153 l~~~L~  158 (250)
T 3e6c_C          153 ILRLFY  158 (250)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876654

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.02  E-value=2.3e-10  Score=66.99  Aligned_cols=48  Identities=17%  Similarity=0.120  Sum_probs=43.3

Q ss_pred             ccCCCCeeehhhh---cCCCC------ceeEEEEcCcEEEEEEcHHHHHHHHHhhHH
Q psy8827           3 AYEDKGSFGELAL---LYNMP------RAATIKATSTGSLWAMDRKTFKQIVLKSAF   50 (82)
Q Consensus         3 ~l~~G~~FGE~al---~~~~~------r~atv~a~~~~~~~~l~~~~f~~ll~~~~~   50 (82)
                      .+++|++|||.++   +.+.|      ++++++|.++|+++.+++++|.+++.+++.
T Consensus        75 ~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~  131 (137)
T 1wgp_A           75 LLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRR  131 (137)
T ss_dssp             ECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCC
T ss_pred             eecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHh
Confidence            7899999999996   78775      589999999999999999999999988764

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.00  E-value=2.1e-10  Score=79.25  Aligned_cols=52  Identities=25%  Similarity=0.430  Sum_probs=46.6

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcC-cEEEEEEcHHHHHHHHHhhHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATS-TGSLWAMDRKTFKQIVLKSAFKKR   53 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~-~~~~~~l~~~~f~~ll~~~~~~~~   53 (82)
                      ..+++|++|||.+++.+.||++||+|.+ +|+++.|++++|.+++.+++....
T Consensus       401 ~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~  453 (469)
T 1o7f_A          401 CTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV  453 (469)
T ss_dssp             EEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--
T ss_pred             EEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHH
Confidence            5689999999999999999999999998 799999999999999998876543

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=98.98  E-value=8.7e-11  Score=81.16  Aligned_cols=49  Identities=29%  Similarity=0.326  Sum_probs=45.4

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFK   51 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~   51 (82)
                      ..+++|++|||.+ +.+.||++|++|.++|++|.+++++|..++.+++..
T Consensus       111 ~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~  159 (469)
T 1o7f_A          111 CTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQY  159 (469)
T ss_dssp             EEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGG
T ss_pred             EEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHH
Confidence            4689999999999 999999999999999999999999999999877653

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=98.92  E-value=1.1e-09  Score=68.75  Aligned_cols=72  Identities=14%  Similarity=0.121  Sum_probs=54.4

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~   74 (82)
                      ..++||++|||       |++++++|.++|+++.+++++|.+++.++|.....       ......+.+..+...+..+|
T Consensus        70 ~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~R  142 (220)
T 2fmy_A           70 AILEAGDIFCT-------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLR  142 (220)
T ss_dssp             EEEETTCEEES-------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             EEcCCCCEeCC-------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            46789999999       89999999999999999999999999887655432       22333344445556677777


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.++.
T Consensus       143 l~~~L~  148 (220)
T 2fmy_A          143 LAEFLV  148 (220)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776554

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=98.90  E-value=5.8e-10  Score=65.34  Aligned_cols=46  Identities=11%  Similarity=0.077  Sum_probs=42.8

Q ss_pred             ccCCCCeeehhhhcCCCCceeEE-EEcCcEEEEEEcHHHHHHHHHhh
Q psy8827           3 AYEDKGSFGELALLYNMPRAATI-KATSTGSLWAMDRKTFKQIVLKS   48 (82)
Q Consensus         3 ~l~~G~~FGE~al~~~~~r~atv-~a~~~~~~~~l~~~~f~~ll~~~   48 (82)
                      .+++|++|||.+++.+.++++++ +|.++|+++.+++++|..++.+.
T Consensus        80 ~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~  126 (134)
T 2d93_A           80 NLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHV  126 (134)
T ss_dssp             EECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCC
T ss_pred             EecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHH
Confidence            47899999999999999999999 99999999999999999998654

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=98.90  E-value=2.5e-09  Score=68.11  Aligned_cols=78  Identities=4%  Similarity=-0.053  Sum_probs=57.2

Q ss_pred             cccCCCCeeehhhhcCCCCc--eeEEEEc-CcEEEEEEcHHHHHHHHHhhHHHHHHH-------HHHHHhhCccccCCCH
Q psy8827           2 HAYEDKGSFGELALLYNMPR--AATIKAT-STGSLWAMDRKTFKQIVLKSAFKKRKM-------YEKLIDAVPMLKSLQV   71 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r--~atv~a~-~~~~~~~l~~~~f~~ll~~~~~~~~~~-------~~~~l~~~~~~~~l~~   71 (82)
                      ..+ ||++|||.+++.+.++  +.++.|. ++|+++.+++++|..++.+++......       .......+..+...+.
T Consensus        62 ~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  140 (238)
T 2bgc_A           62 QYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGK  140 (238)
T ss_dssp             EEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             EEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence            346 8999999999999875  6677777 599999999999999998877554322       2233344455566677


Q ss_pred             HHHHHHHHh
Q psy8827          72 MVFFLYLVC   80 (82)
Q Consensus        72 ~~~~~~~~~   80 (82)
                      .+|++.++.
T Consensus       141 ~~Rla~~L~  149 (238)
T 2bgc_A          141 LGSICSQLL  149 (238)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            788776554

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=98.84  E-value=3.7e-09  Score=66.52  Aligned_cols=72  Identities=13%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH-------HHHHHHhhCccccCCCHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK-------MYEKLIDAVPMLKSLQVMVF   74 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~-------~~~~~l~~~~~~~~l~~~~~   74 (82)
                      ..++||++||       .|++++++|.++|+++.+++++|..++.++|.....       ........+..+...+..+|
T Consensus        66 ~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R  138 (222)
T 1ft9_A           66 FYLTSGDMFC-------MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQR  138 (222)
T ss_dssp             EEEETTCEEE-------SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             EEcCCCCEec-------CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            4678999999       789999999999999999999999999877643322       22333444455566677777


Q ss_pred             HHHHHh
Q psy8827          75 FLYLVC   80 (82)
Q Consensus        75 ~~~~~~   80 (82)
                      ++.+++
T Consensus       139 l~~~L~  144 (222)
T 1ft9_A          139 IAGFFI  144 (222)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776554

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=98.81  E-value=4.6e-10  Score=75.80  Aligned_cols=55  Identities=27%  Similarity=0.358  Sum_probs=0.0

Q ss_pred             ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHH
Q psy8827           3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE   57 (82)
Q Consensus         3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~   57 (82)
                      .+++||+|||.+++.+.||+++++|.++|+++.+++++|.++++++|.......+
T Consensus       289 ~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~  343 (355)
T 3beh_A          289 ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK  343 (355)
T ss_dssp             -------------------------------------------------------
T ss_pred             EECCCCEEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999876554433

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=98.80  E-value=4.5e-09  Score=65.27  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=53.2

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHH-HHHHHHHHHHhhCccccCCCHHHHHHHHHh
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAF-KKRKMYEKLIDAVPMLKSLQVMVFFLYLVC   80 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~   80 (82)
                      ..++||++||| +++.+.|++++++|.++|+++.+ +++|..-+..... .-.+........+..+...+..+|++.+++
T Consensus        51 ~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i-~~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~  128 (202)
T 2zcw_A           51 RLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL-PENPDPELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMAAALL  128 (202)
T ss_dssp             EEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC-CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             EEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE-hHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            46899999999 99999999999999999999999 9887621111111 111233334444555666777888776554

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=98.58  E-value=2.2e-08  Score=73.37  Aligned_cols=49  Identities=27%  Similarity=0.464  Sum_probs=44.9

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcC-cEEEEEEcHHHHHHHHHhhHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATS-TGSLWAMDRKTFKQIVLKSAF   50 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~-~~~~~~l~~~~f~~ll~~~~~   50 (82)
                      ..+++|++|||.+++.+.+++++++|.+ +|+++.+++++|.+++.+++.
T Consensus        96 ~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~  145 (694)
T 3cf6_E           96 CTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA  145 (694)
T ss_dssp             EEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCC
T ss_pred             EEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHH
Confidence            5688999999999999999999999999 599999999999999976653

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=92.09  E-value=0.019  Score=33.69  Aligned_cols=56  Identities=13%  Similarity=0.080  Sum_probs=32.7

Q ss_pred             ceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCccccCCCHHHHHHH
Q psy8827          21 RAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPMLKSLQVMVFFLY   77 (82)
Q Consensus        21 r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~   77 (82)
                      |.++|.|.. ...+.....++..++........+.+..+++++|+|+.+++.+....
T Consensus         2 rr~~v~ae~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l   57 (161)
T 3idb_B            2 RRASVCAEA-YNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQV   57 (161)
T ss_dssp             CCCCEECCC-CCTTC--------CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHH
T ss_pred             CceeEEecc-CCccchhcccCCcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHH
Confidence            445554432 22344455666666655555667788899999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	3e-11
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	5e-11
d1ne6a2	132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	5e-06
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	2e-04

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (127), Expect = 3e-11
 Identities = 27/56 (48%), Positives = 40/56 (71%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
             +  + GSFGELAL+Y  PRAAT+KA +   LW +DR ++++I++ S  +KRKMY
Sbjct: 81  ATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 136

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.5 bits (125), Expect = 5e-11
 Identities = 35/56 (62%), Positives = 47/56 (83%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY 56
           +  Y+++GSFGELAL+YN PRAATI ATS G+LW +DR TF++I++K+  KKRKMY
Sbjct: 81  VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 136

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.4 bits (91), Expect = 5e-06
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 1   MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
           +        FGE+ALL N PRAAT+ A        +DR  F++++   +   ++  ++ 
Sbjct: 69  VGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 127

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 9   SFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL 59
            FGELAL+ N PRAA+  A  T    AMD + F++++       ++     
Sbjct: 82  YFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.54
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.45
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.35
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.33
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.32
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.29
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.25
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.25
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.21
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.19
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.12
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.12
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.11
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.1
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.02
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	98.9
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	98.59
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	85.1
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	84.55
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	83.68

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=4.1e-15  Score=87.92  Aligned_cols=55  Identities=49%  Similarity=0.936  Sum_probs=51.1

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY   56 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~   56 (82)
                      ..++||++|||++++.+.||++|++|.++|.++.|++++|.+++.+++..++++|
T Consensus        82 ~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~~~~~r~~y  136 (136)
T d1ne6a1          82 TSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY  136 (136)
T ss_dssp             EEECTTCEECCHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHTHHHHHHHHHHH
T ss_pred             ceeccccccccHHHcCCCcceEEEEEccCEEEEEEEHHHHHHHHhhCHHHHHhhC
Confidence            4689999999999999999999999999999999999999999999998776654

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=6.7e-14  Score=82.08  Aligned_cols=55  Identities=64%  Similarity=1.103  Sum_probs=51.1

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMY   56 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~   56 (82)
                      ..+++|++|||++++.+.||+++++|.++|++|.|++++|++++.+++..++++|
T Consensus        82 ~~l~~g~~fg~~~l~~~~~~~~s~~a~~~~~~~~i~~~~f~~ll~~~~~~~r~~y  136 (136)
T d1cx4a1          82 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY  136 (136)
T ss_dssp             EEEESSCEECHHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             eccCCccccchHHHhCCCcceEEEEECCCEEEEEEeHHHHHHHHHhCHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999988777654

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=4.1e-13  Score=79.26  Aligned_cols=53  Identities=32%  Similarity=0.359  Sum_probs=48.0

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRK   54 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~   54 (82)
                      ..+++|++|||.+++.+.||++|++|.++|+++.+++++|.+++.+.+....+
T Consensus        75 ~~~~~g~~fGe~~~~~~~~~~~t~~a~~~~~~~~i~~~~f~~ll~~~~~i~~~  127 (147)
T d1cx4a2          75 ARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKR  127 (147)
T ss_dssp             EEECTTCEESCHHHHHTCCCSSEEEEEEEEEEEEEEHHHHHHHCGGGHHHHHH
T ss_pred             eeccCCcEeeehhhcCCCCceEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHH
Confidence            46789999999999999999999999999999999999999999988755433

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=6.7e-13  Score=76.69  Aligned_cols=48  Identities=27%  Similarity=0.486  Sum_probs=44.3

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCc-EEEEEEcHHHHHHHHHhhH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATST-GSLWAMDRKTFKQIVLKSA   49 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~-~~~~~l~~~~f~~ll~~~~   49 (82)
                      ..+++|++|||.+++.+.||++|++|.++ |.++.|++++|.+++.+++
T Consensus        74 ~~~~~G~~fGe~~ll~~~~r~~t~~a~~~~~~l~~i~~~~f~~il~~~~  122 (124)
T d1o7fa3          74 CTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVE  122 (124)
T ss_dssp             EEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTT
T ss_pred             ccccCCcchhhhHhhCCCceeeEEEEEeCcEEEEEEcHHHHHHHHhhcc
Confidence            35789999999999999999999999986 8999999999999998765

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=8.4e-13  Score=81.14  Aligned_cols=57  Identities=21%  Similarity=0.381  Sum_probs=50.6

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEK   58 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~   58 (82)
                      ..+++|++|||.+++.+.+|++|++|.++|+++.+++++|..++.++|.........
T Consensus       130 ~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~  186 (193)
T d1q3ea_         130 MKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV  186 (193)
T ss_dssp             EEECTTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred             eeeccceeeeeeeccCCCcccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence            368899999999999999999999999999999999999999999988765544333

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.29  E-value=4.8e-12  Score=73.76  Aligned_cols=60  Identities=25%  Similarity=0.350  Sum_probs=53.6

Q ss_pred             ccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy8827           3 AYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDA   62 (82)
Q Consensus         3 ~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~   62 (82)
                      .+++|++|||.+++.+.|++++++|.++|+++.+++++|.+++.+++.......+.+.++
T Consensus        72 ~l~~G~~~G~~~~l~~~~~~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~~~~~~~~~R  131 (133)
T d1vp6a_          72 ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  131 (133)
T ss_dssp             EECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             eeccCcccccccccCCCcccceEEECCCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999999999999998777665555443

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=4.1e-12  Score=75.86  Aligned_cols=48  Identities=29%  Similarity=0.394  Sum_probs=44.8

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAF   50 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~   50 (82)
                      ..+++|++||| +++.+.||++|++|.++|+++.|++++|++++.+++.
T Consensus        93 ~~l~~g~~fGe-~~l~~~~~~~tv~a~~~~~l~~i~~~~f~~il~~~~~  140 (155)
T d1o7fa2          93 CTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQ  140 (155)
T ss_dssp             EEECTTCEECG-GGGGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred             ccccccccchh-hhhcCCCceEEEEECCCEEEEEEeHHHHHHHHHHCHH
Confidence            46899999999 8999999999999999999999999999999988765

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.25  E-value=2.9e-12  Score=74.50  Aligned_cols=50  Identities=32%  Similarity=0.385  Sum_probs=47.4

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFK   51 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~   51 (82)
                      ..++||++|||.+++.+.||++|++|.++|+++.|++++|.+++.+++..
T Consensus        70 ~~~~~g~~fG~~~~~~~~~~~~t~~a~~~~~~~~i~~~~~~~ll~~~p~~  119 (132)
T d1ne6a2          70 GRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDI  119 (132)
T ss_dssp             EEECTTCEECHHHHHHTSSCSSEEEESSCEEEEEEEHHHHHHHTGGGHHH
T ss_pred             hhccccceeeEeeecCCCceeEEEEEcccEEEEEEEHHHHHHHHHHCHHH
Confidence            46889999999999999999999999999999999999999999998875

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.21  E-value=1.3e-11  Score=72.29  Aligned_cols=60  Identities=12%  Similarity=0.090  Sum_probs=52.6

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHh
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLID   61 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~   61 (82)
                      ..++||++||+.+++.+.|++++++|.++|.++.+++++|.+++.+++...........+
T Consensus        68 ~~~~~G~~~G~~~~~~~~~~~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~~~~~~l~~  127 (142)
T d2gaua2          68 RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK  127 (142)
T ss_dssp             EEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ecccccchhhhhhhhccCCceeEEEecCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            458899999999999999999999999999999999999999999998766555544433

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.19  E-value=9.4e-12  Score=73.18  Aligned_cols=47  Identities=15%  Similarity=0.137  Sum_probs=41.0

Q ss_pred             cccCCCCeeehhhhcC---------CCCceeEEEEcCcEEEEEEcHHHHHHHHHhh
Q psy8827           2 HAYEDKGSFGELALLY---------NMPRAATIKATSTGSLWAMDRKTFKQIVLKS   48 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~---------~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~   48 (82)
                      ..++||++|||++++.         ..+|++||+|+++|++|.|++++|+.++.++
T Consensus        74 ~~l~~G~~fGE~~ll~~~~~~~~~~~~~r~~tv~a~t~~~l~~L~~~dl~~il~~~  129 (137)
T d1wgpa_          74 SLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQF  129 (137)
T ss_dssp             EECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHH
T ss_pred             eeccCCcEEcchhHhccCCCcccccccccCcEEEEeeeEEEEEEEHHHHHHHHHHh
Confidence            3679999999999972         3468899999999999999999999998765

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.12  E-value=6.2e-11  Score=68.84  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=50.2

Q ss_pred             cccCCCCeeehhhhcCC----CCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy8827           2 HAYEDKGSFGELALLYN----MPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDA   62 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~----~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~   62 (82)
                      ..++||++|||++++.+    .|++++++|.++|.++.++++.|.+++.+++.........+.++
T Consensus        56 ~~~~~g~~~G~~~~~~~~~~~~~~~~~~~a~~~~~vl~i~~~~~~~~~~~~~~~~~~~~~~~~~r  120 (134)
T d2oz6a2          56 GYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADR  120 (134)
T ss_dssp             EEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             eeccCCCccchHHHhcCccccccceeEEEECCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            46789999999999964    47899999999999999999999999999887665554444433

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=7.1e-11  Score=68.00  Aligned_cols=61  Identities=16%  Similarity=0.231  Sum_probs=50.9

Q ss_pred             cccCCCCeeehhhhcCC-CCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy8827           2 HAYEDKGSFGELALLYN-MPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDA   62 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~-~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~   62 (82)
                      ..+.+|++||+.+++.+ .|++++++|.++|+++.+++++|.+++.+++.........+.++
T Consensus        57 ~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~r  118 (132)
T d1i5za2          57 SYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR  118 (132)
T ss_dssp             EEECTTCEESCTTTTSSSCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             hhhCcccccchHHHhcCCccceEEEEEccceEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            46789999999999975 67899999999999999999999999998876655554444433

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=6.9e-11  Score=67.81  Aligned_cols=58  Identities=9%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             cccCCCCeeehhhhcCCCCc-eeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPR-AATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL   59 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r-~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~   59 (82)
                      ..+++|++||+.+++.+.++ +++++|.++|+++.+++++|.+++.+++..........
T Consensus        54 ~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l  112 (129)
T d1o5la1          54 DEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDV  112 (129)
T ss_dssp             EEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhcccccccchHHHhccCCCccEEEEeecccEEEEEcHHHHHHHHHhCHHHHHHHHHHH
Confidence            45789999999999998875 68999999999999999999999999887655444433

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.02  E-value=2.9e-10  Score=66.73  Aligned_cols=56  Identities=7%  Similarity=-0.034  Sum_probs=48.9

Q ss_pred             cccCCCCeeehhhhcCCCCc-eeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPR-AATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYE   57 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r-~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~   57 (82)
                      ..+++|++|||.+++.+.++ +++++|.++|+++.++++.|.+++.+++........
T Consensus        75 ~~~~~g~~fGe~~~~~~~~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p~~~~~~~~  131 (147)
T d1zyba2          75 EQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMN  131 (147)
T ss_dssp             EEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHH
T ss_pred             EEcCCCCEeccchhhcccccccceeeecceeeeeehhHHHHHHHHHHCHHHHHHHHH
Confidence            46789999999999988876 799999999999999999999999999876554433

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=98.90  E-value=1.3e-09  Score=63.53  Aligned_cols=61  Identities=8%  Similarity=0.056  Sum_probs=51.8

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHHHhhCcc
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKLIDAVPM   65 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~l~~~~~   65 (82)
                      ..+++|++|||+.   ..+++.+++|.++|+++.++++.|..++.+++.......+.+.+++..
T Consensus        68 ~~~~~g~~~g~~~---~~~~~~~~~a~~~~~v~~i~~~~f~~l~~~~p~l~~~il~~~~~r~~~  128 (139)
T d3e5ua2          68 YYAGGNSLIGKLY---PTGNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAY  128 (139)
T ss_dssp             EEEETTCEECCCS---CCSCEEEEEESSCEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred             eeccccceeehhh---hhcccccccccccceEEEeeHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            4678999999965   457899999999999999999999999999998887777777666543

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.59  E-value=3.1e-08  Score=57.13  Aligned_cols=51  Identities=16%  Similarity=0.104  Sum_probs=42.0

Q ss_pred             cccCCCCeeehhhhcCCCCceeEEEEcCcEEEEEEcHHHHHHHHHhhHHHHHHHHHHH
Q psy8827           2 HAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTFKQIVLKSAFKKRKMYEKL   59 (82)
Q Consensus         2 ~~l~~G~~FGE~al~~~~~r~atv~a~~~~~~~~l~~~~f~~ll~~~~~~~~~~~~~~   59 (82)
                      ..++||++|||.       ++++++|+++|+++.+++++|.+++.+++.........+
T Consensus        65 ~~~~~g~~f~~~-------~~~~v~A~~~s~v~~i~~~~~~~ll~~~p~~~~~l~~~l  115 (132)
T d1ft9a2          65 FYLTSGDMFCMH-------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAIL  115 (132)
T ss_dssp             EEEETTCEEESC-------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             cccccccccccc-------ccccceeccceeeeeehHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999984       578999999999999999999999998876655444433

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.10  E-value=0.81  Score=24.67  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhhCccccCCCHHHHHHHH
Q psy8827          51 KKRKMYEKLIDAVPMLKSLQVMVFFLYL   78 (82)
Q Consensus        51 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~   78 (82)
                      ..++...++++++|+|+.++++++...+
T Consensus         9 ~~~~~l~~~l~~~~~F~~l~~~~~~~l~   36 (136)
T d1cx4a1           9 DQRNRLQEACKDILLFKNLDPEQMSQVL   36 (136)
T ss_dssp             HHHHHHHHHHTTCGGGTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHhhhcCCHHHHHHHh
Confidence            3455677899999999999999875544

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=84.55  E-value=0.69  Score=24.92  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=18.2

Q ss_pred             HHHHHhhCccccCCCHHHHHHH
Q psy8827          56 YEKLIDAVPMLKSLQVMVFFLY   77 (82)
Q Consensus        56 ~~~~l~~~~~~~~l~~~~~~~~   77 (82)
                      ..++++++|+|+.++++++...
T Consensus         9 ~~~~l~~~p~F~~l~~~~l~~l   30 (133)
T d1vp6a_           9 NWQLVAAVPLFQKLGPAVLVEI   30 (133)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHH
T ss_pred             HHHHHHCCCccccCCHHHHHHH
Confidence            4478999999999999986543

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.68  E-value=0.78  Score=24.36  Aligned_cols=25  Identities=12%  Similarity=-0.035  Sum_probs=20.9

Q ss_pred             HHHHHHHHhhCccccCCCHHHHHHH
Q psy8827          53 RKMYEKLIDAVPMLKSLQVMVFFLY   77 (82)
Q Consensus        53 ~~~~~~~l~~~~~~~~l~~~~~~~~   77 (82)
                      .+.+...|+++|+|+.|++..+...
T Consensus         5 ~~~i~~~L~~~~~F~~l~~~~l~~l   29 (124)
T d1o7fa3           5 LEIIYDELLHIKALSHLSTTVKREL   29 (124)
T ss_dssp             HHHHHHHHTTCGGGTTSCHHHHHHH
T ss_pred             HHHHHHHHhCCHhhhcCCHHHHHHH
Confidence            4567889999999999999887653