Psyllid ID: psy8831

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MILTFGIREQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMISRNGDALSVITSTPNIHHSDD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccHHHccccEEEcccccccccEcccccccccccccHHHEHcccccccccccccccccEEcccccHcccccccccccccc
Coil and Loop (DISEMBL)
miltfgireqtgnkrsgvscancsttcttlwrrnnngepvcnacglimntvdinapekimppiesmisrngdalsvitstpnihhsdd
Flexible Loop (DISEMBL)
miltfgireqtgnkrsgvscanCSTTCttlwrrnnnGEPVCNACGLIMNTVDINAPEKIMPPIESMISRNGDALSVItstpnihhsdd
Low Complexity Region (SEG)
MILTFGIREQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMISRNGDALSVITSTPNIHHSDD
Disordered region (IsUnstruct)
****************GVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKI*****************************
Disordered Region (DISOPRED)
**********************CSTTCTTLWRRNNNGEPVCNACGLIMNTVDI***********************************
Disordered Region (DISEMBL)
MILTFGIREQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMISRNGDALSVITSTPNIHHSDD
Disordered Region (DISPRO)
********EQT***R*GVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKI*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILTFGIREQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMISRNGDALSVITSTPNIHHSDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q91428	438	Transcription factor GATA	yes	N/A	0.556	0.111	0.612	4e-12
P23773	435	GATA-binding factor 3 OS=	N/A	N/A	0.556	0.112	0.612	4e-12
P23825	444	GATA-binding factor 3 OS=	yes	N/A	0.534	0.105	0.612	5e-12
P91623	486	GATA-binding factor C OS=	yes	N/A	0.534	0.096	0.638	5e-12
Q08DV0	443	Trans-acting T-cell-speci	yes	N/A	0.545	0.108	0.612	2e-11
P23772	443	Trans-acting T-cell-speci	yes	N/A	0.556	0.110	0.612	2e-11
P23771	443	Trans-acting T-cell-speci	yes	N/A	0.545	0.108	0.612	3e-11
P43691	380	Transcription factor GATA	no	N/A	0.556	0.128	0.591	3e-11
Q91677	392	Transcription factor GATA	N/A	N/A	0.556	0.125	0.591	3e-11
O09100	480	Endothelial transcription	no	N/A	0.556	0.102	0.571	5e-11

>sp|Q91428|GATA3_DANRE Transcription factor GATA-3 OS=Danio rerio GN=gata3 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P
Sbjct: 298 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRP 346

Danio rerio (taxid: 7955)

>sp|P23773|GATA3_XENLA GATA-binding factor 3 OS=Xenopus laevis GN=gata3 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P
Sbjct: 298 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRP 346

Xenopus laevis (taxid: 8355)

>sp|P23825|GATA3_CHICK GATA-binding factor 3 OS=Gallus gallus GN=GATA3 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P
Sbjct: 306 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRP 354

Transcriptional activator which probably serves as a general switch factor for cell-specific development. It binds to DNA sites with the consensus sequence 5'-[AT]GATA[AG]-3' within regulatory regions of genes.

Gallus gallus (taxid: 9031)

>sp|P91623|GATAC_DROME GATA-binding factor C OS=Drosophila melanogaster GN=grn PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 35/47 (74%)

Query: 10  QTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           Q+  KR+G SCANC TT TTLWRRN +GEPVCNACGL     ++N P
Sbjct: 311 QSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRP 357

Transcription factor that is vital to the development of multiple organ systems. Binds to the core consensus sequence 5'-WGATAR-3'.

Drosophila melanogaster (taxid: 7227)

>sp|Q08DV0|GATA3_BOVIN Trans-acting T-cell-specific transcription factor GATA-3 OS=Bos taurus GN=GATA3 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P
Sbjct: 305 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRP 353

Transcriptional activator which binds to the enhancer of the T-cell receptor alpha and delta genes. Binds to the consensus sequence 5'-AGATAG-3'.

Bos taurus (taxid: 9913)

>sp|P23772|GATA3_MOUSE Trans-acting T-cell-specific transcription factor GATA-3 OS=Mus musculus GN=Gata3 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P
Sbjct: 305 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRP 353

Transcriptional activator which binds to the enhancer of the T-cell receptor alpha and delta genes. Binds to the consensus sequence 5'-AGATAG-3'.

Mus musculus (taxid: 10090)

>sp|P23771|GATA3_HUMAN Trans-acting T-cell-specific transcription factor GATA-3 OS=Homo sapiens GN=GATA3 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P
Sbjct: 305 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRP 353

Transcriptional activator which binds to the enhancer of the T-cell receptor alpha and delta genes. Binds to the consensus sequence 5'-AGATAG-3'.

Homo sapiens (taxid: 9606)

>sp|P43691|GATA4_CHICK Transcription factor GATA-4 (Fragment) OS=Gallus gallus GN=GATA4 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 34/49 (69%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R  + ++R G+SCANC TT TTLWRRN  GEPVCNACGL M    +  P
Sbjct: 199 RRLSASRRVGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRP 247

Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'.

Gallus gallus (taxid: 9031)

>sp|Q91677|GATA4_XENLA Transcription factor GATA-4 OS=Xenopus laevis GN=gata4 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 34/49 (69%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R  + ++R G+SCANC TT TTLWRRN  GEPVCNACGL M    +  P
Sbjct: 226 RRLSASRRVGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRP 274

Associated with cardiac specification and can regulate cardiac-specific transcription during embryogenesis. Activates the expression of cardiac MHC-alpha in vivo.

Xenopus laevis (taxid: 8355)

>sp|O09100|GATA2_MOUSE Endothelial transcription factor GATA-2 OS=Mus musculus GN=Gata2 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 34/49 (69%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R  +  +R+G  CANC TT TTLWRRN NG+PVCNACGL     ++N P
Sbjct: 337 RRLSAARRAGTCCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNVNRP 385

Transcriptional activator which regulates endothelin-1 gene expression in endothelial cells. Binds to the consensus sequence 5'-AGATAG-3'.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
328721860	637	PREDICTED: hypothetical protein LOC10016	0.545	0.075	0.75	1e-14
345491204	737	PREDICTED: hypothetical protein LOC10012	0.511	0.061	0.717	2e-12
357609511	633	GATA transcription factor GATAc [Danaus	0.488	0.067	0.739	6e-12
157125526	719	transcription factor GATA-4 (GATA bindin	0.511	0.062	0.688	8e-12
56900908	719	GATA transcription factor GATAc [Aedes a	0.511	0.062	0.688	9e-12
170043916	578	GATA transcription factor GATAc [Culex q	0.511	0.077	0.666	1e-11
383863207	703	PREDICTED: uncharacterized protein LOC10	0.522	0.065	0.695	1e-11
54262117	567	GATA transcription factor e [Strongyloce	0.556	0.086	0.591	3e-11
37781291	644	GATA transcription factor alpha [Patiria	0.556	0.076	0.612	3e-11
347967441	747	AGAP002236-PA [Anopheles gambiae str. PE	0.511	0.060	0.688	4e-11

>gi|328721860|ref|XP_001943307.2| PREDICTED: hypothetical protein LOC100166174 isoform 1 [Acyrthosiphon pisum] gi|328721862|ref|XP_003247419.1| PREDICTED: hypothetical protein LOC100166174 isoform 2 [Acyrthosiphon pisum]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 40/48 (83%)

Query: 9   EQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           +QTGNKRSGV+CANCST  TTLWRRNNNGEPVCNACGL     ++N P
Sbjct: 464 QQTGNKRSGVACANCSTNTTTLWRRNNNGEPVCNACGLYFKLHNVNRP 511

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491204|ref|XP_001607832.2| PREDICTED: hypothetical protein LOC100124020 [Nasonia vitripennis]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 35/46 (76%)

Query: 11  TGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           TG +R GV CANCSTT TTLWRRNNNGEPVCNACGL      +N P
Sbjct: 560 TGGRRLGVRCANCSTTTTTLWRRNNNGEPVCNACGLYFKLHGVNRP 605

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357609511|gb|EHJ66491.1| GATA transcription factor GATAc [Danaus plexippus]

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 38/46 (82%), Gaps = 3/46 (6%)

Query: 12  GNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGL---IMNTVDIN 54
           GN+R GV+CANC T+ TTLWRRNNNGEPVCNACGL   + N VDIN
Sbjct: 505 GNRRVGVTCANCRTSNTTLWRRNNNGEPVCNACGLYYKLHNIVDIN 550

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125526|ref|XP_001654370.1| transcription factor GATA-4 (GATA binding factor-4) [Aedes aegypti] gi|108873605|gb|EAT37830.1| AAEL010224-PA [Aedes aegypti]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 12  GNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           GN+R+GV CANCSTT TTLWRRNN GEPVCNACGL     +++ P
Sbjct: 531 GNRRTGVVCANCSTTTTTLWRRNNRGEPVCNACGLYHKLHNVDRP 575

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56900908|gb|AAW31747.1| GATA transcription factor GATAc [Aedes aegypti]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 12  GNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           GN+R+GV CANCSTT TTLWRRNN GEPVCNACGL     +++ P
Sbjct: 530 GNRRTGVVCANCSTTTTTLWRRNNRGEPVCNACGLYHKLHNVDRP 574

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043916|ref|XP_001849613.1| GATA transcription factor GATAc [Culex quinquefasciatus] gi|167867188|gb|EDS30571.1| GATA transcription factor GATAc [Culex quinquefasciatus]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query: 12  GNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           GN+R+GV+CANC TT TTLWRRNN GEPVCNACGL     +++ P
Sbjct: 505 GNRRTGVTCANCQTTTTTLWRRNNRGEPVCNACGLYHKLHNVDRP 549

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863207|ref|XP_003707073.1| PREDICTED: uncharacterized protein LOC100875315 [Megachile rotundata]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 36/46 (78%)

Query: 11  TGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           TG +R+GV CANC TT TTLWRRNNNGEPVCNACGL     ++N P
Sbjct: 492 TGVRRTGVQCANCRTTNTTLWRRNNNGEPVCNACGLYYKLHNVNRP 537

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|54262117|ref|NP_001005725.1| GATA transcription factor e [Strongylocentrotus purpuratus] gi|52001519|gb|AAU21562.1| GATA transcription factor [Strongylocentrotus purpuratus]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 37/49 (75%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R Q+G++R G++CANC T+ TTLWRRN +GEPVCNACGL      +N P
Sbjct: 305 RLQSGSRREGITCANCHTSTTTLWRRNKDGEPVCNACGLYFKLHGVNRP 353

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|37781291|gb|AAP35028.1| GATA transcription factor alpha [Patiria miniata]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 35/49 (71%)

Query: 8   REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           R Q+G++R G+ CANC TT TTLWRRN  GEPVCNACGL      +N P
Sbjct: 403 RLQSGSRREGIVCANCHTTTTTLWRRNKEGEPVCNACGLYYKLHSVNRP 451

Source: Patiria miniata

Species: Patiria miniata

Genus: Patiria

Family: Asterinidae

Order: Valvatida

Class: Asteroidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|347967441|ref|XP_001230593.3| AGAP002236-PA [Anopheles gambiae str. PEST] gi|333466294|gb|EAU77738.3| AGAP002236-PA [Anopheles gambiae str. PEST]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/45 (68%), Positives = 35/45 (77%)

Query: 12  GNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           GN+RSGV+CANC TT TTLWRRNN G+PVCNACGL      +N P
Sbjct: 551 GNRRSGVTCANCQTTTTTLWRRNNQGDPVCNACGLYYKLHSVNRP 595

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
UNIPROTKB|P43695	390	gata5-a "GATA-binding factor 5	0.522	0.117	0.543	4.3e-13
UNIPROTKB|P23771	443	GATA3 "Trans-acting T-cell-spe	0.875	0.173	0.455	1.7e-12
UNIPROTKB|D4A2N9	438	Gata4 "Transcription factor GA	0.556	0.111	0.591	2.4e-12
RGD|2665	440	Gata4 "GATA binding protein 4"	0.556	0.111	0.591	2.5e-12
UNIPROTKB|P46152	440	Gata4 "Transcription factor GA	0.556	0.111	0.591	2.5e-12
UNIPROTKB|D2HDE5	412	PANDA_008702 "Putative unchara	0.852	0.182	0.454	3e-12
FB|FBgn0001138	486	grn "grain" [Drosophila melano	0.534	0.096	0.638	3.3e-12
ZFIN|ZDB-GENE-990415-82	438	gata3 "GATA-binding protein 3"	0.875	0.175	0.455	3.5e-12
UNIPROTKB|F1RUM8	442	GATA3 "Uncharacterized protein	0.852	0.169	0.454	3.5e-12
UNIPROTKB|Q08DV0	443	GATA3 "Trans-acting T-cell-spe	0.852	0.169	0.454	3.5e-12

UNIPROTKB|P43695 gata5-a "GATA-binding factor 5-A" [Xenopus laevis (taxid:8355)]

 Score = 152 (58.6 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query:    11 TGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
             + ++R+G+ C NC T+ TTLWRRN+ GEPVCNACGL M    +  P
Sbjct:   228 SSSRRAGLCCTNCHTSTTTLWRRNSEGEPVCNACGLYMKLHGVPRP 273

GO:0005634 "nucleus" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|P23771 GATA3 "Trans-acting T-cell-specific transcription factor GATA-3" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 36/79 (45%), Positives = 45/79 (56%)

Query:     8 REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMI 67
             R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P  +    E + 
Sbjct:   305 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKK--EGIQ 362

Query:    68 SRNGDALSVITSTPNIHHS 86
             +RN    S       +H S
Sbjct:   363 TRNRKMSSKSKKCKKVHDS 381

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035799 "ureter maturation" evidence=IEA

GO:0035898 "parathyroid hormone secretion" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043370 "regulation of CD4-positive, alpha-beta T cell differentiation" evidence=IEA

GO:0043523 "regulation of neuron apoptotic process" evidence=IEA

GO:0045061 "thymic T cell selection" evidence=IEA

GO:0045064 "T-helper 2 cell differentiation" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048589 "developmental growth" evidence=IEA

GO:0051569 "regulation of histone H3-K4 methylation" evidence=IEA

GO:0060017 "parathyroid gland development" evidence=IEA

GO:0060374 "mast cell differentiation" evidence=IEA

GO:0061085 "regulation of histone H3-K27 methylation" evidence=IEA

GO:0071599 "otic vesicle development" evidence=IEA

GO:0071773 "cellular response to BMP stimulus" evidence=IEA

GO:0072602 "interleukin-4 secretion" evidence=IEA

GO:0072643 "interferon-gamma secretion" evidence=IEA

GO:2000114 "regulation of establishment of cell polarity" evidence=IEA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001806 "type IV hypersensitivity" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0002572 "pro-T cell differentiation" evidence=IEA

GO:0005134 "interleukin-2 receptor binding" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0010332 "response to gamma radiation" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=IEA

GO:0032689 "negative regulation of interferon-gamma production" evidence=IEA

GO:0032703 "negative regulation of interleukin-2 production" evidence=IEA

GO:0032736 "positive regulation of interleukin-13 production" evidence=IEA

GO:0032754 "positive regulation of interleukin-5 production" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEP

GO:0071837 "HMG box domain binding" evidence=IPI

GO:0007165 "signal transduction" evidence=ISS

GO:0060676 "ureteric bud formation" evidence=ISS

GO:0032753 "positive regulation of interleukin-4 production" evidence=ISS

GO:0042421 "norepinephrine biosynthetic process" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS;IMP;IDA

GO:2000607 "negative regulation of cell proliferation involved in mesonephros development" evidence=ISS

GO:0045786 "negative regulation of cell cycle" evidence=IMP

GO:2000146 "negative regulation of cell motility" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA;IMP

GO:0072179 "nephric duct formation" evidence=ISS

GO:0001709 "cell fate determination" evidence=ISS

GO:0042035 "regulation of cytokine biosynthetic process" evidence=ISS

GO:0001823 "mesonephros development" evidence=ISS

GO:0048485 "sympathetic nervous system development" evidence=ISS

GO:0048646 "anatomical structure formation involved in morphogenesis" evidence=ISS

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=ISS

GO:0031929 "TOR signaling cascade" evidence=ISS

GO:0045582 "positive regulation of T cell differentiation" evidence=ISS

GO:0050852 "T cell receptor signaling pathway" evidence=ISS

GO:0008584 "male gonad development" evidence=ISS

GO:0060065 "uterus development" evidence=ISS

GO:0035457 "cellular response to interferon-alpha" evidence=IEP

GO:0071353 "cellular response to interleukin-4" evidence=IEP

GO:2000664 "positive regulation of interleukin-5 secretion" evidence=IDA

GO:2000667 "positive regulation of interleukin-13 secretion" evidence=IMP;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0009615 "response to virus" evidence=IEP

GO:0001071 "nucleic acid binding transcription factor activity" evidence=IMP;IDA

GO:2000734 "negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation" evidence=ISS

GO:2000703 "negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IMP

GO:0001046 "core promoter sequence-specific DNA binding" evidence=IDA

GO:0009967 "positive regulation of signal transduction" evidence=IMP

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IMP

GO:0010595 "positive regulation of endothelial cell migration" evidence=IMP

GO:2000679 "positive regulation of transcription regulatory region DNA binding" evidence=IMP

GO:0060231 "mesenchymal to epithelial transition" evidence=IDA

GO:0072676 "lymphocyte migration" evidence=IDA

GO:2000683 "regulation of cellular response to X-ray" evidence=IMP

GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:2000352 "negative regulation of endothelial cell apoptotic process" evidence=IMP

GO:0071356 "cellular response to tumor necrosis factor" evidence=IEP

GO:0050728 "negative regulation of inflammatory response" evidence=IMP

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IDA

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IDA

GO:0001822 "kidney development" evidence=IMP

GO:2000611 "positive regulation of thyroid hormone generation" evidence=IMP

GO:0043583 "ear development" evidence=IMP

GO:0072182 "regulation of nephron tubule epithelial cell differentiation" evidence=ISS

GO:0072107 "positive regulation of ureteric bud formation" evidence=ISS

GO:0072178 "nephric duct morphogenesis" evidence=ISS

GO:0003281 "ventricular septum development" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS

GO:0045599 "negative regulation of fat cell differentiation" evidence=IMP

GO:0061290 "canonical Wnt receptor signaling pathway involved in metanephric kidney development" evidence=ISS

GO:0003180 "aortic valve morphogenesis" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0003677 "DNA binding" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006952 "defense response" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0008134 "transcription factor binding" evidence=IPI

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0070888 "E-box binding" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|D4A2N9 Gata4 "Transcription factor GATA-4" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
 Identities = 29/49 (59%), Positives = 34/49 (69%)

Query:     8 REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
             R  + ++R G+SCANC TT TTLWRRN  GEPVCNACGL M    +  P
Sbjct:   258 RRLSASRRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRP 306

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

RGD|2665 Gata4 "GATA binding protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
 Identities = 29/49 (59%), Positives = 34/49 (69%)

Query:     8 REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
             R  + ++R G+SCANC TT TTLWRRN  GEPVCNACGL M    +  P
Sbjct:   258 RRLSASRRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRP 306

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA;ISO

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISO;IDA

GO:0001076 "RNA polymerase II transcription factor binding transcription factor activity" evidence=ISO

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0001702 "gastrulation with mouth forming second" evidence=IEA;ISO

GO:0001706 "endoderm formation" evidence=IEA;ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=ISO

GO:0003181 "atrioventricular valve morphogenesis" evidence=IEA;ISO

GO:0003197 "endocardial cushion development" evidence=IEA;ISO

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISO

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IEA;ISO

GO:0003281 "ventricular septum development" evidence=ISO

GO:0003289 "atrial septum primum morphogenesis" evidence=ISO

GO:0003290 "atrial septum secundum morphogenesis" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;IDA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0007267 "cell-cell signaling" evidence=IEA;ISO

GO:0007283 "spermatogenesis" evidence=IEA;ISO

GO:0007507 "heart development" evidence=ISO;TAS

GO:0008134 "transcription factor binding" evidence=IEA;ISO;IDA;IPI

GO:0008270 "zinc ion binding" evidence=IEA;TAS

GO:0008584 "male gonad development" evidence=ISO

GO:0009612 "response to mechanical stimulus" evidence=IDA

GO:0010468 "regulation of gene expression" evidence=ISO

GO:0010507 "negative regulation of autophagy" evidence=IMP

GO:0010575 "positive regulation vascular endothelial growth factor production" evidence=ISO

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA;ISO

GO:0030509 "BMP signaling pathway" evidence=IEA;ISO

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IDA

GO:0032526 "response to retinoic acid" evidence=ISO

GO:0033613 "activating transcription factor binding" evidence=IPI

GO:0035050 "embryonic heart tube development" evidence=ISO

GO:0035054 "embryonic heart tube anterior/posterior pattern specification" evidence=IEA;ISO

GO:0035239 "tube morphogenesis" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEA;ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO;IMP

GO:0043627 "response to estrogen stimulus" evidence=IEA;ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0045766 "positive regulation of angiogenesis" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO;IDA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA;ISO

GO:0048598 "embryonic morphogenesis" evidence=ISO

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA;ISO

GO:0051525 "NFAT protein binding" evidence=IPI

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA;IEP;ISO

GO:0060008 "Sertoli cell differentiation" evidence=IEA;ISO

GO:0060043 "regulation of cardiac muscle cell proliferation" evidence=ISO

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA;ISO

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA;ISO

GO:0060395 "SMAD protein signal transduction" evidence=IEA;ISO

GO:0060413 "atrial septum morphogenesis" evidence=ISO

GO:0060464 "lung lobe formation" evidence=IEA;ISO

GO:0060575 "intestinal epithelial cell differentiation" evidence=IEA;ISO

GO:0061049 "cell growth involved in cardiac muscle cell development" evidence=IDA

GO:0070410 "co-SMAD binding" evidence=ISO

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0071371 "cellular response to gonadotropin stimulus" evidence=ISO

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA;ISO

GO:0072148 "epithelial cell fate commitment" evidence=IEA;ISO

GO:0072520 "seminiferous tubule development" evidence=IEA;ISO

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=IMP

UNIPROTKB|P46152 Gata4 "Transcription factor GATA-4" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
 Identities = 29/49 (59%), Positives = 34/49 (69%)

Query:     8 REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
             R  + ++R G+SCANC TT TTLWRRN  GEPVCNACGL M    +  P
Sbjct:   258 RRLSASRRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRP 306

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0001706 "endoderm formation" evidence=IEA

GO:0003181 "atrioventricular valve morphogenesis" evidence=IEA

GO:0003197 "endocardial cushion development" evidence=IEA

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IEA

GO:0003290 "atrial septum secundum morphogenesis" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0035054 "embryonic heart tube anterior/posterior pattern specification" evidence=IEA

GO:0035239 "tube morphogenesis" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0060008 "Sertoli cell differentiation" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060395 "SMAD protein signal transduction" evidence=IEA

GO:0060464 "lung lobe formation" evidence=IEA

GO:0060575 "intestinal epithelial cell differentiation" evidence=IEA

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA

GO:0072148 "epithelial cell fate commitment" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

UNIPROTKB|D2HDE5 PANDA_008702 "Putative uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 171 (65.3 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 35/77 (45%), Positives = 44/77 (57%)

Query:     8 REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMI 67
             R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P  +    E + 
Sbjct:   274 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKK--EGIQ 331

Query:    68 SRNGDALSVITSTPNIH 84
             +RN    S       +H
Sbjct:   332 TRNRKMSSKSKKCKKVH 348

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=ISS

GO:0001071 "nucleic acid binding transcription factor activity" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0001709 "cell fate determination" evidence=ISS

GO:0001822 "kidney development" evidence=ISS

GO:0001823 "mesonephros development" evidence=ISS

GO:0003180 "aortic valve morphogenesis" evidence=ISS

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS

GO:0003281 "ventricular septum development" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0008584 "male gonad development" evidence=ISS

GO:0009967 "positive regulation of signal transduction" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=ISS

GO:0031929 "TOR signaling cascade" evidence=ISS

GO:0032753 "positive regulation of interleukin-4 production" evidence=ISS

GO:0042035 "regulation of cytokine biosynthetic process" evidence=ISS

GO:0042421 "norepinephrine biosynthetic process" evidence=ISS

GO:0043583 "ear development" evidence=ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

GO:0045582 "positive regulation of T cell differentiation" evidence=ISS

GO:0045599 "negative regulation of fat cell differentiation" evidence=ISS

GO:0045786 "negative regulation of cell cycle" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0048485 "sympathetic nervous system development" evidence=ISS

GO:0048646 "anatomical structure formation involved in morphogenesis" evidence=ISS

GO:0050728 "negative regulation of inflammatory response" evidence=ISS

GO:0050852 "T cell receptor signaling pathway" evidence=ISS

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0060065 "uterus development" evidence=ISS

GO:0060231 "mesenchymal to epithelial transition" evidence=ISS

GO:0060676 "ureteric bud formation" evidence=ISS

GO:0061290 "canonical Wnt receptor signaling pathway involved in metanephric kidney development" evidence=ISS

GO:0070888 "E-box binding" evidence=ISS

GO:0072107 "positive regulation of ureteric bud formation" evidence=ISS

GO:0072178 "nephric duct morphogenesis" evidence=ISS

GO:0072179 "nephric duct formation" evidence=ISS

GO:0072182 "regulation of nephron tubule epithelial cell differentiation" evidence=ISS

GO:0072676 "lymphocyte migration" evidence=ISS

GO:2000146 "negative regulation of cell motility" evidence=ISS

GO:2000352 "negative regulation of endothelial cell apoptotic process" evidence=ISS

GO:2000607 "negative regulation of cell proliferation involved in mesonephros development" evidence=ISS

GO:2000611 "positive regulation of thyroid hormone generation" evidence=ISS

GO:2000664 "positive regulation of interleukin-5 secretion" evidence=ISS

GO:2000667 "positive regulation of interleukin-13 secretion" evidence=ISS

GO:2000679 "positive regulation of transcription regulatory region DNA binding" evidence=ISS

GO:2000683 "regulation of cellular response to X-ray" evidence=ISS

GO:2000703 "negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation" evidence=ISS

GO:2000734 "negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation" evidence=ISS

FB|FBgn0001138 grn "grain" [Drosophila melanogaster (taxid:7227)]

 Score = 172 (65.6 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 30/47 (63%), Positives = 35/47 (74%)

Query:    10 QTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
             Q+  KR+G SCANC TT TTLWRRN +GEPVCNACGL     ++N P
Sbjct:   311 QSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRP 357

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;NAS

GO:0009887 "organ morphogenesis" evidence=IMP;NAS

GO:0009888 "tissue development" evidence=IMP;NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IMP

ZFIN|ZDB-GENE-990415-82 gata3 "GATA-binding protein 3" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 36/79 (45%), Positives = 45/79 (56%)

Query:     8 REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMI 67
             R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P  +    E + 
Sbjct:   298 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKK--EGIQ 355

Query:    68 SRNGDALSVITSTPNIHHS 86
             +RN    S    +   H S
Sbjct:   356 TRNRKMSSKSKKSKKSHDS 374

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0021514 "ventral spinal cord interneuron differentiation" evidence=IMP

GO:0060788 "ectodermal placode formation" evidence=IGI

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RUM8 GATA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 171 (65.3 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 35/77 (45%), Positives = 44/77 (57%)

Query:     8 REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMI 67
             R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P  +    E + 
Sbjct:   304 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKK--EGIQ 361

Query:    68 SRNGDALSVITSTPNIH 84
             +RN    S       +H
Sbjct:   362 TRNRKMSSKSKKCKKVH 378

GO:2000734 "negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation" evidence=IEA

GO:2000703 "negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation" evidence=IEA

GO:2000683 "regulation of cellular response to X-ray" evidence=IEA

GO:2000679 "positive regulation of transcription regulatory region DNA binding" evidence=IEA

GO:2000667 "positive regulation of interleukin-13 secretion" evidence=IEA

GO:2000664 "positive regulation of interleukin-5 secretion" evidence=IEA

GO:2000611 "positive regulation of thyroid hormone generation" evidence=IEA

GO:2000607 "negative regulation of cell proliferation involved in mesonephros development" evidence=IEA

GO:2000352 "negative regulation of endothelial cell apoptotic process" evidence=IEA

GO:2000146 "negative regulation of cell motility" evidence=IEA

GO:2000114 "regulation of establishment of cell polarity" evidence=IEA

GO:0072676 "lymphocyte migration" evidence=IEA

GO:0072643 "interferon-gamma secretion" evidence=IEA

GO:0072602 "interleukin-4 secretion" evidence=IEA

GO:0072182 "regulation of nephron tubule epithelial cell differentiation" evidence=IEA

GO:0072179 "nephric duct formation" evidence=IEA

GO:0072107 "positive regulation of ureteric bud formation" evidence=IEA

GO:0071837 "HMG box domain binding" evidence=IEA

GO:0071773 "cellular response to BMP stimulus" evidence=IEA

GO:0071599 "otic vesicle development" evidence=IEA

GO:0071356 "cellular response to tumor necrosis factor" evidence=IEA

GO:0071353 "cellular response to interleukin-4" evidence=IEA

GO:0070888 "E-box binding" evidence=IEA

GO:0061290 "canonical Wnt receptor signaling pathway involved in metanephric kidney development" evidence=IEA

GO:0061085 "regulation of histone H3-K27 methylation" evidence=IEA

GO:0060676 "ureteric bud formation" evidence=IEA

GO:0060374 "mast cell differentiation" evidence=IEA

GO:0060231 "mesenchymal to epithelial transition" evidence=IEA

GO:0060065 "uterus development" evidence=IEA

GO:0060037 "pharyngeal system development" evidence=IEA

GO:0060017 "parathyroid gland development" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0051569 "regulation of histone H3-K4 methylation" evidence=IEA

GO:0050852 "T cell receptor signaling pathway" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0048589 "developmental growth" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048485 "sympathetic nervous system development" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045786 "negative regulation of cell cycle" evidence=IEA

GO:0045599 "negative regulation of fat cell differentiation" evidence=IEA

GO:0045582 "positive regulation of T cell differentiation" evidence=IEA

GO:0045064 "T-helper 2 cell differentiation" evidence=IEA

GO:0045061 "thymic T cell selection" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0043523 "regulation of neuron apoptotic process" evidence=IEA

GO:0043370 "regulation of CD4-positive, alpha-beta T cell differentiation" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042421 "norepinephrine biosynthetic process" evidence=IEA

GO:0042035 "regulation of cytokine biosynthetic process" evidence=IEA

GO:0035898 "parathyroid hormone secretion" evidence=IEA

GO:0035799 "ureter maturation" evidence=IEA

GO:0035457 "cellular response to interferon-alpha" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IEA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0032754 "positive regulation of interleukin-5 production" evidence=IEA

GO:0032753 "positive regulation of interleukin-4 production" evidence=IEA

GO:0032736 "positive regulation of interleukin-13 production" evidence=IEA

GO:0032703 "negative regulation of interleukin-2 production" evidence=IEA

GO:0032689 "negative regulation of interferon-gamma production" evidence=IEA

GO:0031929 "TOR signaling cascade" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=IEA

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IEA

GO:0010595 "positive regulation of endothelial cell migration" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005134 "interleukin-2 receptor binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003281 "ventricular septum development" evidence=IEA

GO:0003215 "cardiac right ventricle morphogenesis" evidence=IEA

GO:0003180 "aortic valve morphogenesis" evidence=IEA

GO:0002572 "pro-T cell differentiation" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0001823 "mesonephros development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001709 "cell fate determination" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=IEA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q08DV0 GATA3 "Trans-acting T-cell-specific transcription factor GATA-3" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 35/77 (45%), Positives = 44/77 (57%)

Query:     8 REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMI 67
             R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P  +    E + 
Sbjct:   305 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKK--EGIQ 362

Query:    68 SRNGDALSVITSTPNIH 84
             +RN    S       +H
Sbjct:   363 TRNRKMSSKSKKCKKVH 379

GO:2000607 "negative regulation of cell proliferation involved in mesonephros development" evidence=ISS

GO:2000352 "negative regulation of endothelial cell apoptotic process" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045582 "positive regulation of T cell differentiation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:2000703 "negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation" evidence=ISS

GO:2000734 "negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0042421 "norepinephrine biosynthetic process" evidence=ISS

GO:0032753 "positive regulation of interleukin-4 production" evidence=ISS

GO:0001071 "nucleic acid binding transcription factor activity" evidence=ISS

GO:0060676 "ureteric bud formation" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0045599 "negative regulation of fat cell differentiation" evidence=ISS

GO:0003180 "aortic valve morphogenesis" evidence=ISS

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0003281 "ventricular septum development" evidence=ISS

GO:0072178 "nephric duct morphogenesis" evidence=ISS

GO:0072107 "positive regulation of ureteric bud formation" evidence=ISS

GO:0072182 "regulation of nephron tubule epithelial cell differentiation" evidence=ISS

GO:2000611 "positive regulation of thyroid hormone generation" evidence=ISS

GO:0043583 "ear development" evidence=ISS

GO:0001822 "kidney development" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0050728 "negative regulation of inflammatory response" evidence=ISS

GO:2000679 "positive regulation of transcription regulatory region DNA binding" evidence=ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:2000146 "negative regulation of cell motility" evidence=ISS

GO:2000667 "positive regulation of interleukin-13 secretion" evidence=ISS

GO:2000664 "positive regulation of interleukin-5 secretion" evidence=ISS

GO:0060231 "mesenchymal to epithelial transition" evidence=ISS

GO:0045786 "negative regulation of cell cycle" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=ISS

GO:0009967 "positive regulation of signal transduction" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=ISS

GO:2000683 "regulation of cellular response to X-ray" evidence=ISS

GO:0072676 "lymphocyte migration" evidence=ISS

GO:0061290 "canonical Wnt receptor signaling pathway involved in metanephric kidney development" evidence=ISS

GO:0060065 "uterus development" evidence=ISS

GO:0008584 "male gonad development" evidence=ISS

GO:0050852 "T cell receptor signaling pathway" evidence=ISS

GO:0031929 "TOR signaling cascade" evidence=ISS

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=ISS

GO:0048646 "anatomical structure formation involved in morphogenesis" evidence=ISS

GO:0048485 "sympathetic nervous system development" evidence=ISS

GO:0001823 "mesonephros development" evidence=ISS

GO:0042035 "regulation of cytokine biosynthetic process" evidence=ISS

GO:0001709 "cell fate determination" evidence=ISS

GO:0072179 "nephric duct formation" evidence=ISS

GO:0070888 "E-box binding" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=IEA

GO:0072643 "interferon-gamma secretion" evidence=IEA

GO:0072602 "interleukin-4 secretion" evidence=IEA

GO:0071837 "HMG box domain binding" evidence=IEA

GO:0071773 "cellular response to BMP stimulus" evidence=IEA

GO:0071599 "otic vesicle development" evidence=IEA

GO:0071356 "cellular response to tumor necrosis factor" evidence=IEA

GO:0071353 "cellular response to interleukin-4" evidence=IEA

GO:0061085 "regulation of histone H3-K27 methylation" evidence=IEA

GO:0060374 "mast cell differentiation" evidence=IEA

GO:0060017 "parathyroid gland development" evidence=IEA

GO:0051569 "regulation of histone H3-K4 methylation" evidence=IEA

GO:0048589 "developmental growth" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045064 "T-helper 2 cell differentiation" evidence=IEA

GO:0045061 "thymic T cell selection" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0043523 "regulation of neuron apoptotic process" evidence=IEA

GO:0043370 "regulation of CD4-positive, alpha-beta T cell differentiation" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0035898 "parathyroid hormone secretion" evidence=IEA

GO:0035799 "ureter maturation" evidence=IEA

GO:0035457 "cellular response to interferon-alpha" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IEA

GO:0033600 "negative regulation of mammary gland epithelial cell proliferation" evidence=IEA

GO:0032754 "positive regulation of interleukin-5 production" evidence=IEA

GO:0032736 "positive regulation of interleukin-13 production" evidence=IEA

GO:0032703 "negative regulation of interleukin-2 production" evidence=IEA

GO:0032689 "negative regulation of interferon-gamma production" evidence=IEA

GO:0030218 "erythrocyte differentiation" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0009615 "response to virus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0006959 "humoral immune response" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005134 "interleukin-2 receptor binding" evidence=IEA

GO:0002572 "pro-T cell differentiation" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P91623	GATAC_DROME	No assigned EC number	0.6382	0.5340	0.0967	yes	N/A
P23772	GATA3_MOUSE	No assigned EC number	0.6122	0.5568	0.1106	yes	N/A
P23771	GATA3_HUMAN	No assigned EC number	0.6122	0.5454	0.1083	yes	N/A
Q91428	GATA3_DANRE	No assigned EC number	0.6122	0.5568	0.1118	yes	N/A
Q08DV0	GATA3_BOVIN	No assigned EC number	0.6122	0.5454	0.1083	yes	N/A
P23825	GATA3_CHICK	No assigned EC number	0.6122	0.5340	0.1058	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	8e-10
pfam00320	36	pfam00320, GATA, GATA zinc finger	6e-09
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	1e-08

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 49.3 bits (118), Expect = 8e-10
 Identities = 20/33 (60%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 15 RSGVSCANCSTTCTTLWRRNNNGE-PVCNACGL 46
           SG SC+NC TT T LWRR  +G   +CNACGL
Sbjct: 1  GSGRSCSNCGTTETPLWRRGPSGNKTLCNACGL 33

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 46.5 bits (111), Expect = 6e-09
 Identities = 17/28 (60%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 20 CANCSTTCTTLWRRNNNGEP-VCNACGL 46
          C+NC TT T LWRR  +G   +CNACGL
Sbjct: 1  CSNCGTTKTPLWRRGPDGNRTLCNACGL 28

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 46.2 bits (110), Expect = 1e-08
 Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 19 SCANCSTTCTTLWRRN-NNGEPVCNACGL 46
          +C+NC TT T LWRR  + G  +CNACGL
Sbjct: 1  ACSNCGTTTTPLWRRGPSGGSTLCNACGL 29

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.71
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.67
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.62
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.98
KOG1601|consensus	340		98.95
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	94.5
KOG3554|consensus	693		93.87
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	88.68
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	88.19
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	86.72
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	85.77
PRK03988	138	translation initiation factor IF-2 subunit beta; V	82.23
TIGR00311	133	aIF-2beta translation initiation factor aIF-2, bet	81.62
smart00653	110	eIF2B_5 domain present in translation initiation f	81.62
KOG3740|consensus	706		81.45

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.71  E-value=6.3e-18  Score=101.84  Aligned_cols=43  Identities=42%  Similarity=0.853  Sum_probs=39.2

Q ss_pred             ccccCCCCCCCccccCCCCC-CccchhHHHHhhhCCCCCCccCC
Q psy8831          19 SCANCSTTCTTLWRRNNNGE-PVCNACGLIMNTVDINAPEKIMP   61 (88)
Q Consensus        19 ~C~nC~tt~Tp~WRrg~~G~-~lCNaCgl~~~~~~~~Rp~~~~~   61 (88)
                      .|+||++++||+||++++|. .|||||||||++++..||.....
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCc
Confidence            59999999999999999544 99999999999999999998864

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.67  E-value=3.8e-17  Score=97.53  Aligned_cols=45  Identities=47%  Similarity=0.854  Sum_probs=41.2

Q ss_pred             CCcccccCCCCCCCccccCCCCC-CccchhHHHHhhhCCC-CCCccC
Q psy8831          16 SGVSCANCSTTCTTLWRRNNNGE-PVCNACGLIMNTVDIN-APEKIM   60 (88)
Q Consensus        16 ~~~~C~nC~tt~Tp~WRrg~~G~-~lCNaCgl~~~~~~~~-Rp~~~~   60 (88)
                      ....|+||++++||+||+++.|. .|||||||||++++.. ||..+.
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~   48 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLK   48 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCCCCccccc
Confidence            46789999999999999999998 9999999999999998 887764

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.62  E-value=1.2e-16  Score=89.09  Aligned_cols=34  Identities=50%  Similarity=1.012  Sum_probs=28.4

Q ss_pred             cccCCCCCCCccccCCCCCC-ccchhHHHHhhhCC
Q psy8831          20 CANCSTTCTTLWRRNNNGEP-VCNACGLIMNTVDI   53 (88)
Q Consensus        20 C~nC~tt~Tp~WRrg~~G~~-lCNaCgl~~~~~~~   53 (88)
                      |++|++++||+||++++|.. |||||||||++++.
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999995 99999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.98  E-value=2.2e-10  Score=93.82  Aligned_cols=49  Identities=37%  Similarity=0.725  Sum_probs=43.7

Q ss_pred             CcccccCCCCCCCccccCCC-----CCCccchhHHHHhhhCCCC-CCccCCCchh
Q psy8831          17 GVSCANCSTTCTTLWRRNNN-----GEPVCNACGLIMNTVDINA-PEKIMPPIES   65 (88)
Q Consensus        17 ~~~C~nC~tt~Tp~WRrg~~-----G~~lCNaCgl~~~~~~~~R-p~~~~~~~~~   65 (88)
                      ..+|.||.|+.||+|||+..     |.+||||||||++.||.+| |..++....+
T Consensus       158 ~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~P~t~ks~~~k  212 (498)
T COG5641         158 PHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPISLKSDSIK  212 (498)
T ss_pred             cchhccccccCCccccccccccccCCccccccccccccccCCcCCCccccccccc
Confidence            34999999999999999998     8899999999999999999 9988755443

>KOG1601|consensus

Probab=98.95  E-value=5.3e-10  Score=78.23  Aligned_cols=46  Identities=41%  Similarity=0.793  Sum_probs=40.2

Q ss_pred             CcccccCCCCCCCccccCCCC-CCccchhHHHHhhhCCCCCCccCCC
Q psy8831          17 GVSCANCSTTCTTLWRRNNNG-EPVCNACGLIMNTVDINAPEKIMPP   62 (88)
Q Consensus        17 ~~~C~nC~tt~Tp~WRrg~~G-~~lCNaCgl~~~~~~~~Rp~~~~~~   62 (88)
                      ...|++|++++||+||+++.| ..+|||||||++.++..|++.....
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~  245 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRP  245 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCc
Confidence            589999999999999999999 5999999999999986676665433

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=94.50  E-value=0.02  Score=47.56  Aligned_cols=49  Identities=29%  Similarity=0.407  Sum_probs=38.8

Q ss_pred             CCcccccCCC-CCCCccccCC-CCCCccchhHHHHhhhCCCCCCccCCCch
Q psy8831          16 SGVSCANCST-TCTTLWRRNN-NGEPVCNACGLIMNTVDINAPEKIMPPIE   64 (88)
Q Consensus        16 ~~~~C~nC~t-t~Tp~WRrg~-~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~   64 (88)
                      ....+.+|.+ +.||.||+.. .+-++||+|+++.+.++..+|+..+...-
T Consensus       296 s~~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n  346 (498)
T COG5641         296 SDKKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPN  346 (498)
T ss_pred             hhcCcccccccccCcccccccccccccccccccccCCcccccccCCCCChh
Confidence            3667888887 6789888775 44489999999999999999988754433

>KOG3554|consensus

Probab=93.87  E-value=0.16  Score=42.93  Aligned_cols=37  Identities=24%  Similarity=0.539  Sum_probs=30.5

Q ss_pred             CcccccCCCCCCCcccc-C-CCCC-CccchhHHHHhhhCC
Q psy8831          17 GVSCANCSTTCTTLWRR-N-NNGE-PVCNACGLIMNTVDI   53 (88)
Q Consensus        17 ~~~C~nC~tt~Tp~WRr-g-~~G~-~lCNaCgl~~~~~~~   53 (88)
                      .+-|.+|+|+++-.|=. | ++.+ .||-.|-+||+++|-
T Consensus       386 g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygG  425 (693)
T KOG3554|consen  386 GRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGG  425 (693)
T ss_pred             CCcccccccccccceeccCCCCccchhhHHHHHHHHHhcC
Confidence            67899999999999843 3 4444 799999999999875

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=88.68  E-value=0.39  Score=31.99  Aligned_cols=39  Identities=26%  Similarity=0.588  Sum_probs=27.5

Q ss_pred             CCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831          14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI   53 (88)
Q Consensus        14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~   53 (88)
                      ......|++|+.. -|.|-.-.-|-.||-.|.-..+..|.
T Consensus        10 ~~~N~~CaDCg~~-~p~w~s~~~GiflC~~Cag~HR~lg~   48 (116)
T PF01412_consen   10 KPGNKVCADCGAP-NPTWASLNYGIFLCLECAGIHRSLGV   48 (116)
T ss_dssp             STTCTB-TTT-SB-S--EEETTTTEEE-HHHHHHHHHHTT
T ss_pred             CcCcCcCCCCCCC-CCCEEEeecChhhhHHHHHHHHHhcc
Confidence            3467899999944 46999999999999999888887774

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.19  E-value=0.13  Score=28.81  Aligned_cols=28  Identities=36%  Similarity=0.959  Sum_probs=19.9

Q ss_pred             ccccCCCCCCCccccCCCCCCccchhHHHH
Q psy8831          19 SCANCSTTCTTLWRRNNNGEPVCNACGLIM   48 (88)
Q Consensus        19 ~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~   48 (88)
                      .|.+|+.+. .++ ....|..+|..||+-.
T Consensus         2 ~Cp~Cg~~~-~~~-D~~~g~~vC~~CG~Vl   29 (43)
T PF08271_consen    2 KCPNCGSKE-IVF-DPERGELVCPNCGLVL   29 (43)
T ss_dssp             SBTTTSSSE-EEE-ETTTTEEEETTT-BBE
T ss_pred             CCcCCcCCc-eEE-cCCCCeEECCCCCCEe
Confidence            699999876 343 3456778999999843

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=86.72  E-value=0.39  Score=37.92  Aligned_cols=40  Identities=23%  Similarity=0.526  Sum_probs=32.6

Q ss_pred             CCCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhC
Q psy8831          12 GNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVD   52 (88)
Q Consensus        12 ~~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~   52 (88)
                      ........|+.|++.. |.|-.-.-|..||-.|.=..|.-|
T Consensus        15 ~~~~~Nk~CaDCga~~-P~W~S~nlGvfiCi~CagvHRsLG   54 (319)
T COG5347          15 KSDSSNKKCADCGAPN-PTWASVNLGVFLCIDCAGVHRSLG   54 (319)
T ss_pred             hhccccCccccCCCCC-CceEecccCeEEEeecchhhhccc
Confidence            3556788999999999 999999999999999965444433

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=85.77  E-value=0.72  Score=30.61  Aligned_cols=38  Identities=21%  Similarity=0.535  Sum_probs=31.8

Q ss_pred             CCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831          16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN   54 (88)
Q Consensus        16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~   54 (88)
                      ....|++|+. .-|.|-.-.-|..||-.|.-..+..|.+
T Consensus         2 ~N~~CaDC~~-~~p~w~s~~~GifvC~~CsgiHR~lg~h   39 (112)
T smart00105        2 GNKKCFDCGA-PNPTWASVNLGVFLCIECSGIHRSLGVH   39 (112)
T ss_pred             CCCcccCCCC-CCCCcEEeccceeEhHHhHHHHHhcCCC
Confidence            3578999998 5599999999999999998888877654

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>PRK03988 translation initiation factor IF-2 subunit beta; Validated

Probab=82.23  E-value=0.35  Score=33.91  Aligned_cols=29  Identities=31%  Similarity=0.600  Sum_probs=21.3

Q ss_pred             cccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          18 VSCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      ..|..|+..+|-+=+.+..=...|+|||-
T Consensus       103 VlC~~C~spdT~l~k~~r~~~l~C~ACGa  131 (138)
T PRK03988        103 VICPECGSPDTKLIKEGRIWVLKCEACGA  131 (138)
T ss_pred             EECCCCCCCCcEEEEcCCeEEEEcccCCC
Confidence            47999999999996643221245999985

>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative

Probab=81.62  E-value=0.39  Score=33.47  Aligned_cols=29  Identities=28%  Similarity=0.606  Sum_probs=21.2

Q ss_pred             cccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          18 VSCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      ..|..|+..+|-+-+.+.--...|+|||-
T Consensus        98 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa  126 (133)
T TIGR00311        98 VICRECNRPDTRIIKEGRVSLLKCEACGA  126 (133)
T ss_pred             EECCCCCCCCcEEEEeCCeEEEecccCCC
Confidence            47999999999987643221135999985

>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5

Probab=81.62  E-value=0.39  Score=32.44  Aligned_cols=29  Identities=34%  Similarity=0.595  Sum_probs=21.1

Q ss_pred             cccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          18 VSCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      ..|..|+..+|-+=+.+..=...|+|||-
T Consensus        81 VlC~~C~spdT~l~k~~r~~~l~C~aCGa  109 (110)
T smart00653       81 VLCPECGSPDTELIKENRLFFLKCEACGA  109 (110)
T ss_pred             EECCCCCCCCcEEEEeCCeEEEEccccCC
Confidence            47999999999997652211134999984

>KOG3740|consensus

Probab=81.45  E-value=0.59  Score=40.33  Aligned_cols=31  Identities=29%  Similarity=0.740  Sum_probs=27.3

Q ss_pred             CCcccccCCCCCCCccccCCCC----CCccchhHH
Q psy8831          16 SGVSCANCSTTCTTLWRRNNNG----EPVCNACGL   46 (88)
Q Consensus        16 ~~~~C~nC~tt~Tp~WRrg~~G----~~lCNaCgl   46 (88)
                      ..-.|..|.|.-||.|+.-+.+    .++|.+|..
T Consensus       461 ~P~~caqcktdftp~wk~ekstq~d~~i~cE~cvt  495 (706)
T KOG3740|consen  461 EPYACAQCKTDFTPAWKKEKSTQADAAIVCENCVT  495 (706)
T ss_pred             CchhhhhcccccccccccccccCcchHHHHHhhhh
Confidence            3679999999999999998888    588999954

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
4hc7_A	115	Crystal Structure Of The Full Dna Binding Domain Of		5e-12
3dfv_D	63	Adjacent Gata Dna Binding Length = 63		6e-12
3gat_A	66	Solution Nmr Structure Of The C-Terminal Domain Of		3e-09
1gat_A	60	Solution Structure Of The Specific Dna Complex Of T		4e-09
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		2e-06
7gat_A	66	Solution Nmr Structure Of The L22v Mutant Dna Bindi		4e-06
2vus_I	43	Crystal Structure Of Unliganded Nmra-Area Zinc Fing		5e-06
3vd6_C	119	Both Zn Fingers Of Gata1 Bound To Palindromic Dna R		1e-05
1y0j_A	46	Zinc Fingers As Protein Recognition Motifs: Structu		2e-04
1gnf_A	46	Solution Structure Of The N-Terminal Zinc Finger Of		2e-04
2l6y_A	39	Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid Length =		7e-04

>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of Gata3-Complex 2 Length = 115

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 35/49 (71%)
Query: 8  REQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          R  +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P
Sbjct: 50 RRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRP 98

>pdb|3DFV|D Chain D, Adjacent Gata Dna Binding Length = 63

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 33/43 (76%)
Query: 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P
Sbjct: 4  RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRP 46

>pdb|3GAT|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of Chicken Gata-1 Bound To Dna, 34 Structures Length = 66

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          KR+G  C+NC T+ TTLWRR+  G+PVCNACGL      +N P
Sbjct: 1  KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRP 43

>pdb|1GAT|A Chain A, Solution Structure Of The Specific Dna Complex Of The Zinc Containing Dna Binding Domain Of The Erythroid Transcription Factor Gata-1 By Multidimensional Nmr Length = 60

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          KR+G  C+NC T+ TTLWRR+  G+PVCNACGL      +N P
Sbjct: 1  KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRP 43

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 10 QTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMISR 69
          + G +    +C NC T  T LWRRN  G+P+CNACGL +    +  P  +   +    +R
Sbjct: 2  KNGEQNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNR 61
Query: 70 N 70
          N
Sbjct: 62 N 62

>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, 34 Structures Length = 66

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 10 QTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMISR 69
          + G +    +C NC T  T +WRRN  G+P+CNACGL +    +  P  +   +    +R
Sbjct: 2  KNGEQNGPTTCTNCFTQTTPVWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNR 61
Query: 70 N 70
          N
Sbjct: 62 N 62

>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger Complex Length = 43

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 19 SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKI 59
          +C NC T  T LWRRN  G+P+CNACGL +    +  P  +
Sbjct: 3  TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL 43

>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna Recognition Site, P21 Crystal Form Length = 119

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 19 SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMI 67
           C NC  T T LWRR+  G  +CNACGL       N P  ++ P + MI
Sbjct: 4  ECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRP--LIRPKKRMI 50

>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural Basis For The Gata-1FRIEND OF GATA INTERACTION Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 19 SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           C NC  T T LWRR+  G  +CNACGL       N P
Sbjct: 6  ECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRP 43

>pdb|1GNF|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Of Murine Gata-1, Nmr, 25 Structures Length = 46

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 19 SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
           C NC  T T LWRR+  G  +CNACGL       N P
Sbjct: 6  ECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRP 43

>pdb|2L6Y|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid Length = 39

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 19 SCANCSTTCTTLWRRNNNGEPVCNACGLI 47
           C NC  T T LWRR+  G  +CNACGL 
Sbjct: 4  ECVNCGATATPLWRRDRTGHYLCNACGLY 32

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	9e-13
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	1e-12
3dfx_A	63	Trans-acting T-cell-specific transcription factor	2e-12
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	1e-11
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	5e-10
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	4e-07

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 55.9 bits (135), Expect = 9e-13
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGL 46
              C NC  T T LWRR+  G  +CNACGL
Sbjct: 3  EARECVNCGATATPLWRRDRTGHYLCNACGL 33

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 56.6 bits (136), Expect = 1e-12
 Identities = 20/47 (42%), Positives = 27/47 (57%)

Query: 10 QTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          + G +    +C NC T  T LWRRN  G+P+CNACGL +    +  P
Sbjct: 2  KNGEQNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRP 48

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 55.8 bits (134), Expect = 2e-12
 Identities = 29/46 (63%), Positives = 34/46 (73%)

Query: 11 TGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          +  +R+G SCANC TT TTLWRRN NG+PVCNACGL     +IN P
Sbjct: 1  SAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRP 46

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 53.2 bits (128), Expect = 1e-11
 Identities = 18/28 (64%), Positives = 21/28 (75%)

Query: 19 SCANCSTTCTTLWRRNNNGEPVCNACGL 46
          +C NC T  T LWRRN  G+P+CNACGL
Sbjct: 3  TCTNCFTQTTPLWRRNPEGQPLCNACGL 30

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 49.5 bits (118), Expect = 5e-10
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 14 KRSGVSCANCSTTCTTLWRRNNNGEPV-CNACGL 46
           +    C+NCS T T  WR   + E + CNAC +
Sbjct: 5  NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFI 38

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 44.3 bits (104), Expect = 4e-07
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 9  EQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIM--NTVDINAPE 57
           +  N    ++C  C      +  R + G+ VC  CGL++    VD    E
Sbjct: 13 RRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR-SE 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.85
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.85
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.84
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.83
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.78
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.77
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.7
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	89.66
3k7a_M	345	Transcription initiation factor IIB; RNA polymeras	87.09
2owa_A	138	Arfgap-like finger domain containing protein; zinc	86.6
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	86.31
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	85.53
1k81_A	36	EIF-2-beta, probable translation initiation factor	84.61
3cw2_K	139	Translation initiation factor 2 subunit beta; AIF2	84.44
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	84.04
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	83.97
2d74_B	148	Translation initiation factor 2 beta subunit; prot	83.04
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	81.15
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	81.15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	80.09
1nee_A	138	EIF-2-beta, probable translation initiation factor	80.02

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.85  E-value=4.4e-22  Score=122.84  Aligned_cols=56  Identities=52%  Similarity=0.908  Sum_probs=48.9

Q ss_pred             CCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCccCCCchhhcc
Q psy8831          13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMIS   68 (88)
Q Consensus        13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~~~~~   68 (88)
                      .......|++|++++||+||+|++|++|||||||||++++..||+.+.....+...
T Consensus         3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~~~i~~R~   58 (63)
T 3dfx_A            3 ARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRN   58 (63)
T ss_dssp             CCCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCSSCCCCC
T ss_pred             CCCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCCCcccccc
Confidence            45678899999999999999999999999999999999999999998755444333

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.85  E-value=4.8e-22  Score=123.54  Aligned_cols=58  Identities=36%  Similarity=0.771  Sum_probs=50.7

Q ss_pred             CCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCccCCCchhhcccCC
Q psy8831          14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESMISRNG   71 (88)
Q Consensus        14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~~~~~r~g   71 (88)
                      ......|++|++++||+||+|++|.+|||||||||++|++.||+.++...++..+|.+
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~   63 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS   63 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence            3568999999999999999999999999999999999999999999866655555543

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.84  E-value=7.9e-22  Score=113.64  Aligned_cols=42  Identities=45%  Similarity=1.023  Sum_probs=40.0

Q ss_pred             cccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCcc
Q psy8831          18 VSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKI   59 (88)
Q Consensus        18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~   59 (88)
                      ..|++|++++||+||+|++|++|||||||||++|++.||+.+
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred             CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCCC
Confidence            579999999999999999999999999999999999999864

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.83  E-value=3.1e-21  Score=112.57  Aligned_cols=43  Identities=42%  Similarity=0.841  Sum_probs=40.7

Q ss_pred             CCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCc
Q psy8831          16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEK   58 (88)
Q Consensus        16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~   58 (88)
                      ....|++|++++||+||++++|.+|||||||||++++++||+.
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~   45 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLI   45 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCC
Confidence            4678999999999999999999999999999999999999974

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.78  E-value=1.1e-19  Score=122.78  Aligned_cols=60  Identities=50%  Similarity=0.875  Sum_probs=51.2

Q ss_pred             cccccCCCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCccCCCchhh
Q psy8831           7 IREQTGNKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESM   66 (88)
Q Consensus         7 ~r~~~~~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~~~   66 (88)
                      +++..........|+||++++||+||++++|++|||||||||++|++.||+.+....+..
T Consensus        49 KKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~rp~~~~~~~i~~  108 (115)
T 4hc9_A           49 KRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQT  108 (115)
T ss_dssp             CCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCGGGCCSSCCC
T ss_pred             cccccccccccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCCCCccccccchhh
Confidence            344445567789999999999999999999999999999999999999999997554433

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.77  E-value=5e-20  Score=115.88  Aligned_cols=51  Identities=27%  Similarity=0.564  Sum_probs=42.2

Q ss_pred             CCCCCcccccCCCCCCCcccc--CCCCCCccchhHHHHhhhCCCCCCccCCCch
Q psy8831          13 NKRSGVSCANCSTTCTTLWRR--NNNGEPVCNACGLIMNTVDINAPEKIMPPIE   64 (88)
Q Consensus        13 ~~~~~~~C~nC~tt~Tp~WRr--g~~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~   64 (88)
                      .......|+||+|++||+||+  ++.| +|||||||||+++++.||+.++...+
T Consensus         4 ~~~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~~~~~   56 (71)
T 2kae_A            4 MNKKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVNKYQ   56 (71)
T ss_dssp             ----CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHHHHHH
T ss_pred             CCCCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcccchhhh
Confidence            345678999999999999999  5666 89999999999999999999875443

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.70  E-value=7.9e-18  Score=113.58  Aligned_cols=46  Identities=41%  Similarity=0.789  Sum_probs=40.8

Q ss_pred             CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCccC
Q psy8831          15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIM   60 (88)
Q Consensus        15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~~   60 (88)
                      ...++|+||++++||+||++++|++||||||||++.++++||+...
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~Kp   48 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKP   48 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSC
T ss_pred             CCCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccc
Confidence            3578999999999999999999999999999999999999997653

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=89.66  E-value=0.16  Score=29.65  Aligned_cols=34  Identities=26%  Similarity=0.632  Sum_probs=25.0

Q ss_pred             CCcccccCCCCCCCccccCCCCCCccchhHHHHhhh
Q psy8831          16 SGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTV   51 (88)
Q Consensus        16 ~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~   51 (88)
                      ....|.+|+.++  +-.....|.++|..|||-+.-+
T Consensus        10 ~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl~e~   43 (58)
T 1dl6_A           10 PRVTCPNHPDAI--LVEDYRAGDMICPECGLVVGDR   43 (58)
T ss_dssp             SCCSBTTBSSSC--CEECSSSCCEECTTTCCEECCS
T ss_pred             ccccCcCCCCCc--eeEeCCCCeEEeCCCCCEEecc
Confidence            445799998755  5445577889999999966443

>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}

Probab=87.09  E-value=0.25  Score=37.22  Aligned_cols=37  Identities=27%  Similarity=0.662  Sum_probs=26.5

Q ss_pred             CCCCCcccccCCCCCCCccccCCCCCCccchhHHHHh
Q psy8831          13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMN   49 (88)
Q Consensus        13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~   49 (88)
                      .......|.+|+...+-+-.....|.++|..||+-..
T Consensus        17 ~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~   53 (345)
T 3k7a_M           17 NLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS   53 (345)
T ss_dssp             CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred             cccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence            4445678999998753343355688999999999553

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=86.60  E-value=0.32  Score=33.13  Aligned_cols=39  Identities=13%  Similarity=0.400  Sum_probs=32.4

Q ss_pred             CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831          15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN   54 (88)
Q Consensus        15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~   54 (88)
                      .....|++|++. -|.|-.-.-|..+|-.|.-..|..|++
T Consensus        34 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h   72 (138)
T 2owa_A           34 PENRTCFDCESR-NPTWLSLSFAVFICLNCSSDHRKMGVH   72 (138)
T ss_dssp             GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHTTCTT
T ss_pred             cCCCcCCCCcCC-CCCeEEecCCEEEhHhhhHHHhCCCCC
Confidence            357899999976 499999999999999998877776654

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=86.31  E-value=0.35  Score=32.67  Aligned_cols=38  Identities=24%  Similarity=0.545  Sum_probs=32.1

Q ss_pred             CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831          15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI   53 (88)
Q Consensus        15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~   53 (88)
                      .....|++|++. -|.|-.-.-|..+|-.|.-..+..|+
T Consensus        25 p~N~~CaDCg~~-~P~WaS~n~GvfiC~~CsgiHR~lG~   62 (134)
T 2iqj_A           25 EDNKFCADCQSK-GPRWASWNIGVFICIRCAGIHRNLGV   62 (134)
T ss_dssp             GGGGBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred             cCCCcCCcCcCC-CCCeEEecCCEEEhHhhhHHHhcCCC
Confidence            457899999976 59999999999999999877777665

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.53  E-value=0.45  Score=32.34  Aligned_cols=38  Identities=24%  Similarity=0.545  Sum_probs=31.6

Q ss_pred             CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831          15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI   53 (88)
Q Consensus        15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~   53 (88)
                      .....|++|++. -|.|-.-.-|..+|-.|.-..+..|+
T Consensus        27 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~   64 (141)
T 2crr_A           27 EDNKYCADCEAK-GPRWASWNIGVFICIRCAGIHRNLGV   64 (141)
T ss_dssp             GGGSSCSSSCCS-SCCSEETTTTEECCHHHHHHHHHHCT
T ss_pred             ccCCcCCCCCCC-CCCeEEeccCeEEhhhhhHhHhcCCC
Confidence            356799999976 59999999999999999877777664

>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1

Probab=84.61  E-value=0.085  Score=28.31  Aligned_cols=28  Identities=25%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             ccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          19 SCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        19 ~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      .|..|+..+|-+=+++..-..-|+|||-
T Consensus         2 lC~~C~~peT~l~~~~~~~~l~C~aCG~   29 (36)
T 1k81_A            2 ICRECGKPDTKIIKEGRVHLLKCMACGA   29 (36)
T ss_dssp             CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred             CCcCCCCCCcEEEEeCCcEEEEhhcCCC
Confidence            5899999999987743221134999985

>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*

Probab=84.44  E-value=0.46  Score=32.40  Aligned_cols=29  Identities=34%  Similarity=0.635  Sum_probs=19.9

Q ss_pred             cccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          18 VSCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      -.|..|+..+|-+-+.+..=..-|+|||-
T Consensus       104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa  132 (139)
T 3cw2_K          104 VECSTCKSLDTILKKEKKSWYIVCLACGA  132 (139)
T ss_dssp             SSCCSSSSSCCCSCSSCSTTTSSCCC---
T ss_pred             eECCCCCCcCcEEEEeCCeEEEEecCCCC
Confidence            67999999999998754322245999986

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.04  E-value=0.61  Score=32.13  Aligned_cols=40  Identities=15%  Similarity=0.437  Sum_probs=33.1

Q ss_pred             CCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831          14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN   54 (88)
Q Consensus        14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~   54 (88)
                      ......|++|+.. -|.|-.-.-|..+|-.|.-..|..|++
T Consensus        26 ~p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h   65 (149)
T 2crw_A           26 VPTNKVCFDCGAK-NPSWASITYGVFLCIDCSGSHRSLGVH   65 (149)
T ss_dssp             STTTSBCSSSCCB-SCCCEETTTTEECCHHHHHHHHHHCTT
T ss_pred             CcCCCcCCCCcCC-CCCcEEeccCEEEchhcchhhccCCCC
Confidence            3467899999964 699999999999999998877777754

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=83.97  E-value=0.69  Score=31.98  Aligned_cols=40  Identities=15%  Similarity=0.389  Sum_probs=33.2

Q ss_pred             CCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831          14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN   54 (88)
Q Consensus        14 ~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~   54 (88)
                      ......|++|++. -|.|-.-.-|-.+|-.|.-..|..|.+
T Consensus        35 ~p~N~~CaDCga~-~P~WaS~nlGvfiC~~CSgiHR~LG~h   74 (147)
T 3dwd_A           35 QDENNVCFECGAF-NPQWVSVTYGIWICLECSGRHRGLGVH   74 (147)
T ss_dssp             STTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred             CcCCCccCCCCCC-CCCeEEecccEeEhHhhChHHhcCCCC
Confidence            4467899999986 499999999999999998877776654

>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*

Probab=83.04  E-value=0.42  Score=32.94  Aligned_cols=29  Identities=31%  Similarity=0.625  Sum_probs=21.7

Q ss_pred             cccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          18 VSCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      ..|..|+..+|-+-+.+..-..-|+|||-
T Consensus       105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa  133 (148)
T 2d74_B          105 VICPVCGSPDTKIIKRDRFHFLKCEACGA  133 (148)
T ss_dssp             SSCSSSCCTTCCCCBSSSSBCCCCSSSCC
T ss_pred             EECCCCCCcCcEEEEeCCEEEEEecCCCC
Confidence            46999999999998754322245999975

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=81.15  E-value=0.33  Score=26.93  Aligned_cols=32  Identities=28%  Similarity=0.711  Sum_probs=22.6

Q ss_pred             CcccccCCCCCCCccccCCCCCCccchhHHHHhh
Q psy8831          17 GVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNT   50 (88)
Q Consensus        17 ~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~   50 (88)
                      ...|-+|+.+  ++-.....|..+|..||+-+.-
T Consensus         5 ~~~CP~C~~~--~l~~d~~~gelvC~~CG~v~~e   36 (50)
T 1pft_A            5 QKVCPACESA--ELIYDPERGEIVCAKCGYVIEE   36 (50)
T ss_dssp             CCSCTTTSCC--CEEEETTTTEEEESSSCCBCCC
T ss_pred             cEeCcCCCCc--ceEEcCCCCeEECcccCCcccc
Confidence            4579999873  4533445677899999996543

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=81.15  E-value=0.53  Score=32.38  Aligned_cols=39  Identities=15%  Similarity=0.522  Sum_probs=32.2

Q ss_pred             CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831          15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN   54 (88)
Q Consensus        15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~   54 (88)
                      .....|++|+.. -|.|-.-.-|..+|-.|.-..+..|++
T Consensus        35 p~N~~CaDCga~-~P~WaS~n~GvfiC~~CsgiHR~LG~h   73 (144)
T 2p57_A           35 PTNKACFDCGAK-NPSWASITYGVFLCIDCSGVHRSLGVH   73 (144)
T ss_dssp             GGGGBCTTTCCB-SCCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred             CCCCcCCCCcCC-CCCeEEeccCEEEhhhchHHHcCCCCC
Confidence            357899999975 599999888999999998877777653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=80.09  E-value=1.1  Score=32.12  Aligned_cols=40  Identities=18%  Similarity=0.535  Sum_probs=32.1

Q ss_pred             CCCCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831          13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI   53 (88)
Q Consensus        13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~   53 (88)
                      .......|+.|+... |.|-.-.-|..+|-.|.-..+.-|.
T Consensus        38 ~~~~n~~c~dc~~~~-p~w~s~~~g~~~c~~cs~~hr~lg~   77 (301)
T 2b0o_E           38 SRPGNSQCCDCGAAD-PTWLSTNLGVLTCIQCSGVHRELGV   77 (301)
T ss_dssp             TSTTTTBCTTTCCBS-CCEEETTTTEEECHHHHHHHHHHCT
T ss_pred             cCCCCCcCCCCCCCC-CCeEEeecCeEEcHHHHHHHHhhCC
Confidence            344678999999864 9999999999999999766665554

>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1

Probab=80.02  E-value=0.48  Score=32.26  Aligned_cols=29  Identities=31%  Similarity=0.620  Sum_probs=21.5

Q ss_pred             cccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          18 VSCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        18 ~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      -.|..|+..+|-+-+.+..=..-|+|||-
T Consensus       103 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa  131 (138)
T 1nee_A          103 VICHECNRPDTRIIREGRISLLKCEACGA  131 (138)
T ss_dssp             HHHTCCSSCSSCCEEETTTTEEECSTTSC
T ss_pred             EECCCCCCcCcEEEEcCCeEEEEccCCCC
Confidence            46999999999998754222245999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	5e-13
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	3e-11
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	5e-11

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.1 bits (135), Expect = 5e-13
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 14 KRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          KR+G  C+NC T+ TTLWRR+  G+PVCNACGL      +N P
Sbjct: 1  KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRP 43

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (122), Expect = 3e-11
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 17 GVSCANCSTTCTTLWRRNNNGEPVCNACGL 46
             C NC  T T LWRR+  G  +CNACGL
Sbjct: 2  ARECVNCGATATPLWRRDRTGHYLCNACGL 31

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 50.2 bits (120), Expect = 5e-11
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 19 SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAP 56
          +C NC T  T LWRRN  G+P+CNACGL +    +  P
Sbjct: 2  TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRP 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.88
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.86
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.82
d1neea2	37	Zinc-binding domain of translation initiation fact	92.73
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	92.67
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	91.54
d1k81a_	36	Zinc-binding domain of translation initiation fact	89.47
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	89.13

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.88  E-value=1e-23  Score=119.77  Aligned_cols=41  Identities=46%  Similarity=1.048  Sum_probs=39.4

Q ss_pred             ccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCcc
Q psy8831          19 SCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKI   59 (88)
Q Consensus        19 ~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~   59 (88)
                      .|+||++++||+||++++|.+|||||||||++|++.||+.+
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G~~lCNACGl~~k~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred             cCCCCCCCCCccceeCCCCCCchhhhhHHHHHcCCCCCCCC
Confidence            69999999999999999999999999999999999999864

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.86  E-value=8.2e-23  Score=125.66  Aligned_cols=52  Identities=44%  Similarity=0.859  Sum_probs=46.0

Q ss_pred             CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCCCCCccCCCchhh
Q psy8831          15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDINAPEKIMPPIESM   66 (88)
Q Consensus        15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~Rp~~~~~~~~~~   66 (88)
                      +...+|+||++++||+||++++|.+|||||||||+++++.||+.+.......
T Consensus         2 r~g~~C~nCgt~~Tp~WRr~~~G~~lCNACGl~~~~~~~~RP~~~~~~~i~~   53 (66)
T d3gata_           2 RAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQT   53 (66)
T ss_dssp             CTTCCCTTTCCCCCSSEEECTTSCEEEHHHHHHHHHHCSCCCGGGCCSSCCC
T ss_pred             CCCCCCCCCCCCCCcccccCCCCCcccchhHHHHHHhCCcCCcccccccccc
Confidence            3567899999999999999999999999999999999999999886554433

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.8e-21  Score=108.93  Aligned_cols=38  Identities=45%  Similarity=0.932  Sum_probs=35.8

Q ss_pred             CcccccCCCCCCCccccCCCCCCccchhHHHHhhhCCC
Q psy8831          17 GVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDIN   54 (88)
Q Consensus        17 ~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~~   54 (88)
                      .+.|+||++++||+||++++|.+|||||||||+.||++
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl~~r~~G~n   39 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN   39 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTSCEECSSHHHHHHHSCCC
T ss_pred             cCCCCCCCCCCCcccccCCCCCEeeHHhHHHHHHhCCC
Confidence            57899999999999999999999999999999999874

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.73  E-value=0.013  Score=30.83  Aligned_cols=28  Identities=29%  Similarity=0.602  Sum_probs=21.7

Q ss_pred             ccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          19 SCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        19 ~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      .|..|+..+|-+-+.+.--...|+|||-
T Consensus         3 ~C~~C~spDT~l~ke~R~~~l~C~aCGa   30 (37)
T d1neea2           3 ICHECNRPDTRIIREGRISLLKCEACGA   30 (37)
T ss_dssp             HHTCCSSCSSCCEEETTTTEEECSTTSC
T ss_pred             ECCCCCCCCCEEEEcCCEEEEEeccCCC
Confidence            5999999999998765433245999985

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.025  Score=32.10  Aligned_cols=33  Identities=27%  Similarity=0.647  Sum_probs=24.1

Q ss_pred             CCCCCcccccCCCCCCCccccCCCCCCccchhHHH
Q psy8831          13 NKRSGVSCANCSTTCTTLWRRNNNGEPVCNACGLI   47 (88)
Q Consensus        13 ~~~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~   47 (88)
                      .......|.+|+.+.  +--....|.++|..||+-
T Consensus         7 ~~~~~~~Cp~Cgs~~--ii~D~~~Ge~vC~~CG~V   39 (58)
T d1dl6a_           7 DALPRVTCPNHPDAI--LVEDYRAGDMICPECGLV   39 (58)
T ss_dssp             CCCSCCSBTTBSSSC--CEECSSSCCEECTTTCCE
T ss_pred             ccccccCCCCCCCCC--EEEECCCCcEecccCCCE
Confidence            445678999999664  222356788999999983

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.54  E-value=0.018  Score=31.78  Aligned_cols=28  Identities=32%  Similarity=0.701  Sum_probs=21.3

Q ss_pred             CcccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          17 GVSCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        17 ~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      ...|.+|+.+.  +-.....|.++|..||+
T Consensus         5 ~~~Cp~Cgs~~--iv~D~~~Ge~vC~~CG~   32 (50)
T d1pfta_           5 QKVCPACESAE--LIYDPERGEIVCAKCGY   32 (50)
T ss_dssp             CCSCTTTSCCC--EEEETTTTEEEESSSCC
T ss_pred             cccCcCCCCCc--EEEECCCCeEecccCCc
Confidence            56799999654  33445678899999998

>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.47  E-value=0.014  Score=30.54  Aligned_cols=28  Identities=25%  Similarity=0.530  Sum_probs=21.0

Q ss_pred             ccccCCCCCCCccccCCCCCCccchhHH
Q psy8831          19 SCANCSTTCTTLWRRNNNGEPVCNACGL   46 (88)
Q Consensus        19 ~C~nC~tt~Tp~WRrg~~G~~lCNaCgl   46 (88)
                      .|..|+..+|-+-+.+.--..-|+|||-
T Consensus         2 ~C~~C~spDT~l~ke~R~~~l~C~aCGa   29 (36)
T d1k81a_           2 ICRECGKPDTKIIKEGRVHLLKCMACGA   29 (36)
T ss_dssp             CCSSSCSCEEEEEEETTEEEEEEETTTE
T ss_pred             CCCCCCCCCCEEEEcCCEEEEEeccCCC
Confidence            5999999999997764322244999985

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.13  E-value=0.1  Score=32.86  Aligned_cols=38  Identities=21%  Similarity=0.537  Sum_probs=32.2

Q ss_pred             CCCcccccCCCCCCCccccCCCCCCccchhHHHHhhhCC
Q psy8831          15 RSGVSCANCSTTCTTLWRRNNNGEPVCNACGLIMNTVDI   53 (88)
Q Consensus        15 ~~~~~C~nC~tt~Tp~WRrg~~G~~lCNaCgl~~~~~~~   53 (88)
                      -....|++|++. -|.|-.-.-|..||-.|.-..+..|.
T Consensus        13 p~N~~CaDC~~~-~p~w~s~n~GvfvC~~CsgiHR~lg~   50 (122)
T d1dcqa2          13 TGNDVCCDCGAP-DPTWLSTNLGILTCIECSGIHRELGV   50 (122)
T ss_dssp             TTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred             CCCCccCCCCCC-CCCeEEecCCEEEchhhhHHHhcCCC
Confidence            356899999966 58999999999999999887887774