Psyllid ID: psy8853

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALIFD
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccEEEEEEEccccccEEEEEEccccccccHHHHHHHHHHcccccccccccEEEccccEEEEEEcccccHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHcccccccEEEEEEEcccEEEcHHHHHHHHHHHHHHHcccccccccccccccc
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHHHHcccEEEEEHHHHccccccccccccEEEEEEEEEcccEEEEEEEEEccHHHHHHHHHHHHHHcccEEccccccHHHEEEEEEEEEcccccHHHHHHHHHHcccccEEEcccccEEEEEcHHHHHHHHHHHHHccccccEEEEEEEcccEEEccHHHHHHHHHHHHHHHccccHHHHEccccccc
maghskwaNIKRKKLIVDAKRGKICTRIMRELRVAInfgnnpdtNIKLRLAIEKALdanipknnIFRAIQKNnsniknenINYIEVRYegysvngaAIIVDcitnnrmrtVSNIRNIFNknggnlskeGSVLFMFKhcgqllflpntkkntLLDLALEKGAEdflidkdnkitiitspsKFIEIKNSlemtgfkaessgivmrpytnivfkdGEAIKLQKLLNELKKLHDVKKVYTNALIFD
maghskwanikrkklivdakrgkICTRIMRELRvainfgnnpdtNIKLRLAIEKALDANIPKNNIFRaiqknnsniknENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAedflidkdnkitiitspskfieiKNSLEMTgfkaessgivmRPYTNIVFKDGEAIKLQKLLNElkklhdvkkvytnalifd
MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANIPKNNIFRAiqknnsnikneninyieVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIklqkllnelkklHDVKKVYTNALIFD
******WANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALIF*
MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALIFD
********NIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALIFD
******************AKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKxxxxxxxxxxxxxxxxxxxxxLIFD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query242 2.2.26 [Sep-21-2011]
A4G2N0242 Probable transcriptional yes N/A 0.983 0.983 0.514 2e-72
A6SVD7241 Probable transcriptional yes N/A 0.983 0.987 0.510 3e-72
Q2Y5G2240 Probable transcriptional yes N/A 0.983 0.991 0.502 4e-72
A9ITM2243 Probable transcriptional yes N/A 0.987 0.983 0.506 5e-72
Q7VWE9243 Probable transcriptional yes N/A 0.987 0.983 0.506 7e-72
Q7W7T8243 Probable transcriptional yes N/A 0.987 0.983 0.502 2e-71
Q7WL78243 Probable transcriptional yes N/A 0.987 0.983 0.502 2e-71
Q46YA0241 Probable transcriptional yes N/A 0.983 0.987 0.531 3e-71
Q2KYW0243 Probable transcriptional yes N/A 0.987 0.983 0.497 4e-71
B3R3E4241 Probable transcriptional yes N/A 0.991 0.995 0.530 4e-71
>sp|A4G2N0|Y561_HERAR Probable transcriptional regulatory protein HEAR0561 OS=Herminiimonas arsenicoxydans GN=HEAR0561 PE=3 SV=1 Back     alignment and function desciption
 Score =  272 bits (696), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/241 (51%), Positives = 175/241 (72%), Gaps = 3/241 (1%)

Query: 1   MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
           MAGHSKWANI+ +K   D KRGKI TR+++E+ VA   G      N +LRLA++KA DAN
Sbjct: 1   MAGHSKWANIQHRKGRQDEKRGKIWTRLIKEITVAARMGGGDIAANPRLRLAVDKAADAN 60

Query: 60  IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
           +PK+N+ RAIQ+ +  +  E +NY E+RYEGY +NGAAI+VDC+T+NR+RTV+ +R+ F+
Sbjct: 61  MPKDNVTRAIQRGSGGL--EGVNYEEIRYEGYGINGAAILVDCMTDNRVRTVAEVRHAFS 118

Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
           K GGN+  EGSV F+FKHCGQ  F P T ++ L++ ALE GAED   D++  I +I  P 
Sbjct: 119 KFGGNMGTEGSVAFLFKHCGQFFFAPGTDEDKLMEAALEAGAEDVTTDEEGGIEVICPPH 178

Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
            F  +K++L   GFKAE + +VM+P T  VF+  +A+K+QKLL+ L+ L DV++V+TNA+
Sbjct: 179 DFSAVKDALAAAGFKAELAEVVMKPATETVFEGDDAVKMQKLLDALENLDDVQEVFTNAV 238

Query: 240 I 240
           I
Sbjct: 239 I 239

Herminiimonas arsenicoxydans (taxid: 204773)
>sp|A6SVD7|Y544_JANMA Probable transcriptional regulatory protein mma_0544 OS=Janthinobacterium sp. (strain Marseille) GN=mma_0544 PE=3 SV=1 Back     alignment and function description
>sp|Q2Y5G2|Y2722_NITMU Probable transcriptional regulatory protein Nmul_A2722 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A2722 PE=3 SV=1 Back     alignment and function description
>sp|A9ITM2|Y3099_BORPD Probable transcriptional regulatory protein Bpet3099 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=Bpet3099 PE=3 SV=1 Back     alignment and function description
>sp|Q7VWE9|Y2308_BORPE Probable transcriptional regulatory protein BP2308 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=BP2308 PE=3 SV=1 Back     alignment and function description
>sp|Q7W7T8|Y2422_BORPA Probable transcriptional regulatory protein BPP2422 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=BPP2422 PE=3 SV=1 Back     alignment and function description
>sp|Q7WL78|Y1871_BORBR Probable transcriptional regulatory protein BB1871 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=BB1871 PE=3 SV=1 Back     alignment and function description
>sp|Q46YA0|Y2522_CUPPJ Probable transcriptional regulatory protein Reut_A2522 OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=Reut_A2522 PE=3 SV=1 Back     alignment and function description
>sp|Q2KYW0|Y2207_BORA1 Probable transcriptional regulatory protein BAV2207 OS=Bordetella avium (strain 197N) GN=BAV2207 PE=3 SV=1 Back     alignment and function description
>sp|B3R3E4|Y859_CUPTR Probable transcriptional regulatory protein RALTA_A0859 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=RALTA_A0859 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
340786243241 hypothetical protein CFU_1053 [Collimona 0.991 0.995 0.555 6e-77
445499047241 YebC-like DNA-binding protein [Janthinob 0.991 0.995 0.534 4e-73
409407305241 hypothetical protein GWL_29100 [Herbaspi 0.983 0.987 0.506 4e-73
300312851241 hypothetical protein Hsero_3556 [Herbasp 0.983 0.987 0.506 8e-73
399017851241 DNA-binding regulatory protein, YebC/Pmp 0.983 0.987 0.514 1e-72
374366982241 hypothetical protein OR16_13789 [Cupriav 0.983 0.987 0.518 1e-72
427400808241 UPF0082 protein [Massilia timonae CCUG 4 0.983 0.987 0.522 6e-72
395763770241 hypothetical protein JPAM2_18739 [Janthi 0.983 0.987 0.526 8e-72
398835766241 DNA-binding regulatory protein, YebC/Pmp 0.983 0.987 0.502 1e-71
134093819242 hypothetical protein HEAR0561 [Herminiim 0.983 0.983 0.514 9e-71
>gi|340786243|ref|YP_004751708.1| hypothetical protein CFU_1053 [Collimonas fungivorans Ter331] gi|340551510|gb|AEK60885.1| hypothetical protein CFU_1053 [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 135/243 (55%), Positives = 182/243 (74%), Gaps = 3/243 (1%)

Query: 1   MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDAN 59
           MAGHSKWANIK KK   DAKRGKI TR+++E+ VA   G    D N +LRLA++KA DAN
Sbjct: 1   MAGHSKWANIKHKKAATDAKRGKIWTRLIKEITVAARMGGGDIDANPRLRLAVDKASDAN 60

Query: 60  IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
           +PK+N+ RAIQ+ +  +  E +NY EVRYEGY +NGAAIIVDC+T+NR+RTV+ +R+ F+
Sbjct: 61  MPKDNVTRAIQRGSGGL--EGVNYEEVRYEGYGINGAAIIVDCMTDNRIRTVAEVRHAFS 118

Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
           K GGN+  EGSV FMFKHCGQLLF P T ++ L++ ALE GAED + D +  I +I++P 
Sbjct: 119 KFGGNMGTEGSVAFMFKHCGQLLFAPGTNEDALMEAALEAGAEDVITDDEGGIEVISAPH 178

Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
            F  +K +LE +GFKAE + I+M+P T  VF   +AIK+QKLL+ L+ L DV+++Y+NA+
Sbjct: 179 DFAALKGALEKSGFKAEMAEIIMKPATETVFAGDDAIKMQKLLDALENLDDVQEIYSNAV 238

Query: 240 IFD 242
           I D
Sbjct: 239 IED 241

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|445499047|ref|ZP_21465902.1| YebC-like DNA-binding protein [Janthinobacterium sp. HH01] gi|444789042|gb|ELX10590.1| YebC-like DNA-binding protein [Janthinobacterium sp. HH01] Back     alignment and taxonomy information
>gi|409407305|ref|ZP_11255756.1| hypothetical protein GWL_29100 [Herbaspirillum sp. GW103] gi|386433056|gb|EIJ45882.1| hypothetical protein GWL_29100 [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|300312851|ref|YP_003776943.1| hypothetical protein Hsero_3556 [Herbaspirillum seropedicae SmR1] gi|124483624|emb|CAM32685.1| Conserved Hypothetical [Herbaspirillum seropedicae] gi|300075636|gb|ADJ65035.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|399017851|ref|ZP_10720040.1| DNA-binding regulatory protein, YebC/PmpR family [Herbaspirillum sp. CF444] gi|398102618|gb|EJL92798.1| DNA-binding regulatory protein, YebC/PmpR family [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|374366982|ref|ZP_09625053.1| hypothetical protein OR16_13789 [Cupriavidus basilensis OR16] gi|373101429|gb|EHP42479.1| hypothetical protein OR16_13789 [Cupriavidus basilensis OR16] Back     alignment and taxonomy information
>gi|427400808|ref|ZP_18892046.1| UPF0082 protein [Massilia timonae CCUG 45783] gi|425720321|gb|EKU83244.1| UPF0082 protein [Massilia timonae CCUG 45783] Back     alignment and taxonomy information
>gi|395763770|ref|ZP_10444439.1| hypothetical protein JPAM2_18739 [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information
>gi|398835766|ref|ZP_10593123.1| DNA-binding regulatory protein, YebC/PmpR family [Herbaspirillum sp. YR522] gi|398215204|gb|EJN01769.1| DNA-binding regulatory protein, YebC/PmpR family [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|134093819|ref|YP_001098894.1| hypothetical protein HEAR0561 [Herminiimonas arsenicoxydans] gi|166227331|sp|A4G2N0.1|Y561_HERAR RecName: Full=Probable transcriptional regulatory protein HEAR0561 gi|133737722|emb|CAL60767.1| conserved hypothetical protein [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
UNIPROTKB|Q8EEF0248 SO_2432 "Probable transcriptio 0.987 0.963 0.418 1.7e-43
TIGR_CMR|SO_2432248 SO_2432 "conserved hypothetica 0.987 0.963 0.418 1.7e-43
UNIPROTKB|Q609L3248 MCA1220 "Probable transcriptio 0.975 0.951 0.384 5.2e-42
UNIPROTKB|Q4K7D6248 PFL_4766 "Probable transcripti 0.975 0.951 0.401 9.6e-41
UNIPROTKB|Q83BE4244 CBU_1566 "Probable transcripti 0.975 0.967 0.380 9.6e-41
TIGR_CMR|CBU_1566244 CBU_1566 "conserved hypothetic 0.975 0.967 0.380 9.6e-41
UNIPROTKB|Q48FC2248 PSPPH_3775 "Probable transcrip 0.991 0.967 0.407 2.6e-40
UNIPROTKB|Q87Y32248 PSPTO_3980 "Probable transcrip 0.991 0.967 0.399 1.4e-39
UNIPROTKB|P0A8A0246 yebC "conserved protein" [Esch 0.987 0.971 0.370 4.9e-37
UNIPROTKB|P62036247 GSU1074 "Probable transcriptio 0.966 0.947 0.357 6.3e-37
UNIPROTKB|Q8EEF0 SO_2432 "Probable transcriptional regulatory protein SO_2432" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 102/244 (41%), Positives = 144/244 (59%)

Query:     1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRV-AINFGNNPDTNIKLRLAIEKALDAN 59
             MAGHSKWANIK +K   DAKRGK+ T+ +REL V A   G++PD+N +LR+AI+KAL  N
Sbjct:     1 MAGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVSAREGGSDPDSNPRLRIAIDKALGGN 60

Query:    60 IPKNNIFRAXXXXXXXXXXXXXXXXXVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
             + ++ I RA                 + YEGY   G A++V+ +T+NR RTVS +RN F+
Sbjct:    61 MTRDTIERAIKRGAGELEGQQLET--IIYEGYGPGGTAVMVETMTDNRNRTVSGVRNAFS 118

Query:   120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
             K+GGNL  +GSV ++F   G L + P T ++ L+D ALE GAED +   D  I + T P+
Sbjct:   119 KSGGNLGTDGSVAYLFTKRGVLSYAPGTDEDALMDAALEAGAEDVVSYDDGAIDVFTEPT 178

Query:   180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIXXXXXXXXXXXXHD-VKKVYTNA 238
              F E+K++L+  GF ++++ I M   T     D E              HD V++VY NA
Sbjct:   179 AFYEVKDALDAAGFVSDNAEIAMIASTKAEL-DAETAEKFMRLIDTLEEHDDVQEVYHNA 237

Query:   239 LIFD 242
              I D
Sbjct:   238 EISD 241
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
TIGR_CMR|SO_2432 SO_2432 "conserved hypothetical protein TIGR01033" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q609L3 MCA1220 "Probable transcriptional regulatory protein MCA1220" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K7D6 PFL_4766 "Probable transcriptional regulatory protein PFL_4766" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|Q83BE4 CBU_1566 "Probable transcriptional regulatory protein CBU_1566" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1566 CBU_1566 "conserved hypothetical protein TIGR01033" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q48FC2 PSPPH_3775 "Probable transcriptional regulatory protein PSPPH_3775" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q87Y32 PSPTO_3980 "Probable transcriptional regulatory protein PSPTO_3980" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8A0 yebC "conserved protein" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|P62036 GSU1074 "Probable transcriptional regulatory protein GSU1074" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B2JE34Y2064_BURP8No assigned EC number0.51440.99170.9917yesN/A
Q3SGS9Y2215_THIDANo assigned EC number0.44080.99170.9876yesN/A
Q46YA0Y2522_CUPPJNo assigned EC number0.53110.98340.9875yesN/A
A6SVD7Y544_JANMANo assigned EC number0.51030.98340.9875yesN/A
Q2SZT0Y1015_BURTANo assigned EC number0.48970.99170.9917yesN/A
Q3JUF8Y1385_BURP1No assigned EC number0.48550.99170.9917yesN/A
Q7W7T8Y2422_BORPANo assigned EC number0.50200.98760.9835yesN/A
A1W753Y1898_ACISJNo assigned EC number0.45600.97520.9874yesN/A
A1K2Y6Y574_AZOSBNo assigned EC number0.45640.98340.9875yesN/A
Q7VWE9Y2308_BORPENo assigned EC number0.50610.98760.9835yesN/A
A1TS27Y3203_ACIACNo assigned EC number0.47710.98340.9958yesN/A
B1JW41Y2317_BURCCNo assigned EC number0.48970.99170.9917yesN/A
Q9JTB0Y1902_NEIMANo assigned EC number0.46880.98340.9834yesN/A
B3R3E4Y859_CUPTRNo assigned EC number0.53080.99170.9958yesN/A
A4G2N0Y561_HERARNo assigned EC number0.51450.98340.9834yesN/A
A3N7F9Y1231_BURP6No assigned EC number0.48550.99170.9917yesN/A
A3NT48Y1240_BURP0No assigned EC number0.48550.99170.9917yesN/A
Q0KD59Y916_CUPNHNo assigned EC number0.52260.99170.9958yesN/A
Q1GYR5Y2355_METFKNo assigned EC number0.45640.98340.9875yesN/A
Q1BUW9Y1682_BURCANo assigned EC number0.48970.99170.9917yesN/A
A9AJK0Y2280_BURM1No assigned EC number0.48970.99170.9917yesN/A
B4E5R6Y2348_BURCJNo assigned EC number0.48970.99170.9917yesN/A
A2S4B3Y3092_BURM9No assigned EC number0.48550.99170.9917yesN/A
A4JGH5Y2379_BURVGNo assigned EC number0.49380.99170.9917yesN/A
Q0BD85Y2332_BURCMNo assigned EC number0.48970.99170.9917yesN/A
Q1LQA5Y785_RALMENo assigned EC number0.52690.98340.9875yesN/A
B1YU49Y2210_BURA4No assigned EC number0.48970.99170.9917yesN/A
B4RMZ8Y1508_NEIG2No assigned EC number0.46470.98340.9834yesN/A
A1V2G2Y2875_BURMSNo assigned EC number0.48550.99170.9917yesN/A
Q2KYW0Y2207_BORA1No assigned EC number0.49790.98760.9835yesN/A
B2T2A5Y1301_BURPPNo assigned EC number0.50610.99170.9917yesN/A
Q142L6Y1185_BURXLNo assigned EC number0.51030.98340.9834yesN/A
A1KV56Y1563_NEIMFNo assigned EC number0.46880.98340.9834yesN/A
Q0AJA6Y281_NITECNo assigned EC number0.48540.98340.9875yesN/A
Q2Y5G2Y2722_NITMUNo assigned EC number0.50200.98340.9916yesN/A
Q39EA1Y5621_BURS3No assigned EC number0.48970.99170.9917yesN/A
Q7WL78Y1871_BORBRNo assigned EC number0.50200.98760.9835yesN/A
Q63VS9Y1165_BURPSNo assigned EC number0.48550.99170.9917yesN/A
Q478D8Y4067_DECARNo assigned EC number0.44850.99170.9958yesN/A
Q62IJ0Y1884_BURMANo assigned EC number0.48550.99170.9917yesN/A
Q5P3B7Y2072_AROAENo assigned EC number0.45640.98340.9875yesN/A
Q82XP6Y210_NITEUNo assigned EC number0.48540.98340.9875yesN/A
B2U8Z2Y2388_RALPJNo assigned EC number0.51860.98340.9875yesN/A
A0K968Y2294_BURCHNo assigned EC number0.48970.99170.9917yesN/A
A4SWH2Y618_POLSQNo assigned EC number0.49370.98340.9958yesN/A
Q9JYC7Y1648_NEIMBNo assigned EC number0.46880.98340.9834yesN/A
A3MI47Y2858_BURM7No assigned EC number0.48550.99170.9917yesN/A
Q5F792Y1291_NEIG1No assigned EC number0.46880.98340.9834yesN/A
Q8XXC5Y2190_RALSONo assigned EC number0.52280.98340.9875yesN/A
A9ITM2Y3099_BORPDNo assigned EC number0.50610.98760.9835yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
PRK00110245 PRK00110, PRK00110, hypothetical protein; Validate 1e-96
COG0217241 COG0217, COG0217, Uncharacterized conserved protei 2e-85
pfam01709234 pfam01709, Transcrip_reg, Transcriptional regulato 5e-85
TIGR01033238 TIGR01033, TIGR01033, DNA-binding regulatory prote 2e-73
PRK12378235 PRK12378, PRK12378, hypothetical protein; Provisio 4e-64
>gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated Back     alignment and domain information 
 Score =  281 bits (723), Expect = 1e-96
 Identities = 114/243 (46%), Positives = 158/243 (65%), Gaps = 5/243 (2%)

Query: 1   MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDAN 59
           MAGHSKWANIK +K   DAKRGKI T+++RE+ VA    G +P+ N +LRLAI+KA  AN
Sbjct: 1   MAGHSKWANIKHRKGAQDAKRGKIFTKLIREITVAAKLGGGDPEGNPRLRLAIDKAKAAN 60

Query: 60  IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
           +PK+NI RAI+K       +  NY E+RYEGY   G AIIV+ +T+NR RT + +R+ F+
Sbjct: 61  MPKDNIERAIKKGTGE--LDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTAAEVRHAFS 118

Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
           KNGGNL + GSV +MF   G ++  P   ++ L++ ALE GAED   D D    +IT+P 
Sbjct: 119 KNGGNLGETGSVSYMFDRKGVIVIEPLD-EDELMEAALEAGAEDVETD-DESFEVITAPE 176

Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
            F  ++++LE  G +AES+ + M P   +   +  A KL KL++ L+ L DV+ VY NA 
Sbjct: 177 DFEAVRDALEAAGLEAESAEVTMIPQNTVELDEETAEKLLKLIDALEDLDDVQNVYHNAE 236

Query: 240 IFD 242
           I D
Sbjct: 237 ISD 239

Length = 245
>gnl|CDD|223295 COG0217, COG0217, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|216656 pfam01709, Transcrip_reg, Transcriptional regulator Back     alignment and domain information
>gnl|CDD|233240 TIGR01033, TIGR01033, DNA-binding regulatory protein, YebC/PmpR family Back     alignment and domain information
>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 242
COG0217241 Uncharacterized conserved protein [Function unknow 100.0
PRK00110245 hypothetical protein; Validated 100.0
TIGR01033238 DNA-binding regulatory protein, YebC/PmpR family. 100.0
PRK12378235 hypothetical protein; Provisional 100.0
PF01709234 Transcrip_reg: Transcriptional regulator; InterPro 100.0
KOG2972|consensus276 100.0
PRK07562 1220 ribonucleotide-diphosphate reductase subunit alpha 98.74
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 93.5
PF0392779 NapD: NapD protein; InterPro: IPR005623 This entry 91.94
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 88.44
PRK1055387 assembly protein for periplasmic nitrate reductase 86.68
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 86.51
PF0918656 DUF1949: Domain of unknown function (DUF1949); Int 86.09
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 85.2
PRK04435147 hypothetical protein; Provisional 83.6
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 80.56
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 80.14
>COG0217 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=8e-98  Score=650.51  Aligned_cols=238  Identities=47%  Similarity=0.752  Sum_probs=232.6

Q ss_pred             CCCcchhHHhHHHhHHhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCC
Q psy8853           1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE   79 (242)
Q Consensus         1 maGHsKW~nIkh~K~~~Da~k~k~f~kl~reI~~Avk~-G~dP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~   79 (242)
                      |||||||+||||+|+++|++|||+|+||+|+|++|||. ||||+.|||||.||++||++|||||+|||||+||+|+  .+
T Consensus         1 MaGHsKw~nIkhrK~a~Dakr~Kif~Kl~keI~vAaK~Gg~dP~~NprLr~aI~kAk~~nmPkd~IerAI~ka~G~--~d   78 (241)
T COG0217           1 MAGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGPDPESNPRLRTAIEKAKAANMPKDNIERAIKKASGG--KD   78 (241)
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHhccCC--CC
Confidence            99999999999999999999999999999999999999 7999999999999999999999999999999999987  47


Q ss_pred             CcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHHhhhcCccccCCCccccccceeeEEEECCC-CChhHHHHHHHh
Q psy8853          80 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALE  158 (242)
Q Consensus        80 ~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~f~K~gg~l~~~gsv~~~F~~kG~i~v~~~-~~~d~~~e~Aie  158 (242)
                      +.+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.+.++ .++|++||.|||
T Consensus        79 ~~~~~ei~YEGygP~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~kGvi~~~~~~~~ed~l~e~~ie  158 (241)
T COG0217          79 GANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIE  158 (241)
T ss_pred             ccceEEEEEEeECCCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEeccEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999999987 599999999999


Q ss_pred             cCCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCcccceecc
Q psy8853         159 KGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNA  238 (242)
Q Consensus       159 ~GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~Ni  238 (242)
                      +|||||+.+ +|.|+|+|+|++|..|+++|+++|+++..+++.|+|+++|++++|+++++++|||+||++||||+||||+
T Consensus       159 agaeDv~~~-~~~~~V~t~p~~~~~V~~~L~~~g~~~~~ael~~iP~~~v~~~~e~a~k~~kLid~LEd~DDVQ~Vy~N~  237 (241)
T COG0217         159 AGAEDVEED-EGSIEVYTEPEDFNKVKEALEAAGYEIESAELTMIPQNTVELDDEDAEKLEKLIDALEDDDDVQNVYHNA  237 (241)
T ss_pred             CCchhhhcC-CCeEEEEEChHHHHHHHHHHHHcCCceeeeeEEEecCCceecCHHHHHHHHHHHHHHhcccchHHHHhcc
Confidence            999999997 5689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy8853         239 LIF  241 (242)
Q Consensus       239 ~~~  241 (242)
                      +++
T Consensus       238 ~~~  240 (241)
T COG0217         238 EIS  240 (241)
T ss_pred             ccC
Confidence            986

>PRK00110 hypothetical protein; Validated Back     alignment and domain information
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family Back     alignment and domain information
>PRK12378 hypothetical protein; Provisional Back     alignment and domain information
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins Back     alignment and domain information
>KOG2972|consensus Back     alignment and domain information
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
4f3q_A247 Structure Of A Yebc Family Protein (Cbu_1566) From 2e-41
1kon_A249 Crystal Structure Of E.Coli Yebc Length = 249 2e-40
1lfp_A249 Crystal Structure Of A Conserved Hypothetical Prote 1e-34
1mw7_A240 X-Ray Structure Of Y162_helpy Northeast Structural 8e-12
>pdb|4F3Q|A Chain A, Structure Of A Yebc Family Protein (Cbu_1566) From Coxiella Burnetii Length = 247 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 131/238 (55%), Gaps = 3/238 (1%)
Query: 2   AGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGNNP-DTNIKLRLAIEKALDANI 60
           AGHSKWANIK  K   DAKRGK+ T+++RE+ VA   G    D+N +LR  ++KA  AN 
Sbjct: 5   AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANX 64
Query: 61  PKNNIFRAXXXXXXXXXXXXXXXXXVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK 120
           PK+ I RA                 VRYEGY  +G A+ VDC+T+N+ RTV+ +R+ F+K
Sbjct: 65  PKDTITRAIKRGAGSGAGDNLVE--VRYEGYGPSGVAVXVDCLTDNKNRTVAEVRHAFSK 122
Query: 121 NGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSK 180
             GNL  EGSV ++FK  G + F PN+ +  + ++ALE GAED   + D  I + T P  
Sbjct: 123 CDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIXEIALEVGAEDVTTNDDGSIDVTTLPED 182
Query: 181 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIXXXXXXXXXXXXHDVKKVYTNA 238
           F +I+N+ +        + + +   T +      A              DV+ VY+NA
Sbjct: 183 FEKIRNAXKAADLNPSHAEVTVLASTEVGLDKDSAEQXLRLTEXLEDLDDVQNVYSNA 240
>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc Length = 249 Back     alignment and structure
>pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein Aq1575 From Aquifex Aeolicus Length = 249 Back     alignment and structure
>pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural Genomics Consortium Target Pr6 Length = 240 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
4f3q_A247 Transcriptional regulatory protein CBU_1566; YEBC 7e-96
1kon_A249 Protein YEBC, YEBC; alpha/beta, two-domains, montr 2e-94
1lfp_A249 Hypothetical protein AQ_1575; NEW fold, thermostab 1e-92
1mw7_A240 Hypothetical protein HP0162; structural genomics, 8e-79
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} Length = 247 Back     alignment and structure
 Score =  279 bits (717), Expect = 7e-96
 Identities = 97/243 (39%), Positives = 149/243 (61%), Gaps = 3/243 (1%)

Query: 1   MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDAN 59
           MAGHSKWANIK  K   DAKRGK+ T+++RE+ VA   G  + D+N +LR  ++KA  AN
Sbjct: 4   MAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAAN 63

Query: 60  IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 119
           +PK+ I RAI++          N +EVRYEGY  +G A++VDC+T+N+ RTV+ +R+ F+
Sbjct: 64  MPKDTITRAIKR--GAGSGAGDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFS 121

Query: 120 KNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPS 179
           K  GNL  EGSV ++FK  G + F PN+ +  ++++ALE GAED   + D  I + T P 
Sbjct: 122 KCDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALEVGAEDVTTNDDGSIDVTTLPE 181

Query: 180 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL 239
            F +I+N+++        + + +   T +      A ++ +L   L+ L DV+ VY+NA 
Sbjct: 182 DFEKIRNAMKAADLNPSHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNAD 241

Query: 240 IFD 242
             +
Sbjct: 242 YPE 244
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Length = 249 Back     alignment and structure
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Length = 249 Back     alignment and structure
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Length = 240 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
4f3q_A247 Transcriptional regulatory protein CBU_1566; YEBC 100.0
1lfp_A249 Hypothetical protein AQ_1575; NEW fold, thermostab 100.0
1kon_A249 Protein YEBC, YEBC; alpha/beta, two-domains, montr 100.0
1mw7_A240 Hypothetical protein HP0162; structural genomics, 100.0
2jsx_A95 Protein NAPD; TAT, proofreading, cytoplasm, chaper 87.97
3lh2_S76 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immun 86.7
2lqj_A94 Mg2+ transport protein; ACT domain, membrane prote 86.55
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 86.36
3t9z_A118 GLNK3, nitrogen regulatory protein P-II (GLNB-3); 80.19
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} Back     alignment and structure
Probab=100.00  E-value=4.1e-100  Score=673.49  Aligned_cols=240  Identities=40%  Similarity=0.703  Sum_probs=226.3

Q ss_pred             CCCcchhHHhHHHhHHhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCC
Q psy8853           1 MAGHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE   79 (242)
Q Consensus         1 maGHsKW~nIkh~K~~~Da~k~k~f~kl~reI~~Avk~-G~dP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~   79 (242)
                      |||||||+||||+|+++|++|+|+|+||+|+|++|||. ||||+.||+||.+|++||++||||++||||||||+|.  .+
T Consensus         4 maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~--~~   81 (247)
T 4f3q_A            4 MAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGS--GA   81 (247)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC------
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC--CC
Confidence            99999999999999999999999999999999999999 9999999999999999999999999999999999986  46


Q ss_pred             CcceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHHhhhcCccccCCCccccccceeeEEEECCCCChhHHHHHHHhc
Q psy8853          80 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEK  159 (242)
Q Consensus        80 ~~~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~f~K~gg~l~~~gsv~~~F~~kG~i~v~~~~~~d~~~e~Aie~  159 (242)
                      +.+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.++++.++|++||.|||+
T Consensus        82 ~~~yeei~YEgyGPgGvaviVe~lTDN~nRT~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~~~~d~~~e~aiea  161 (247)
T 4f3q_A           82 GDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALEV  161 (247)
T ss_dssp             -CCCEEEEEEEECGGGCEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             cCCceEEEEEEEcCCCeEEEEEEeCCCHhHHHHHHHHHHHhcCceECCCCceeEEEeeeEEEEECCCCCHHHHHHHHHhC
Confidence            78999999999999999999999999999999999999999999999999999999999999998878999999999999


Q ss_pred             CCcceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCcccceeccc
Q psy8853         160 GAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNAL  239 (242)
Q Consensus       160 GaeDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~Ni~  239 (242)
                      |||||++++||.|+|+|+|++|.+|+++|++.||++.++++.|+|+++|+|++|+++++++|+++|+++||||+||||++
T Consensus       162 GAeDv~~~edg~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~~~~~klid~Led~dDVq~Vy~N~~  241 (247)
T 4f3q_A          162 GAEDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNPSHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDVQNVYSNAD  241 (247)
T ss_dssp             TCSEEEECTTSCEEEEECGGGHHHHHHHHHHTTCCCSEEEEEEEESSCEECCHHHHHHHHHHHHHHHTSTTEEEEEECEE
T ss_pred             CCceeeecCCceEEEEECHHHHHHHHHHHHHcCCCeeEEEEEEecCCccccCHHHHHHHHHHHHHhhcCcCcceeeECCC
Confidence            99999998787899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy8853         240 IFD  242 (242)
Q Consensus       240 ~~~  242 (242)
                      +||
T Consensus       242 ~~~  244 (247)
T 4f3q_A          242 YPE  244 (247)
T ss_dssp             CCG
T ss_pred             CCc
Confidence            875
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Back     alignment and structure
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Back     alignment and structure
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Back     alignment and structure
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A Back     alignment and structure
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene} Back     alignment and structure
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 242
d1kona_244 e.39.1.1 (A:) Hypothetical protein YebC {Escherich 6e-61
d1lfpa_243 e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex 4e-52
d1mw7a_220 e.39.1.1 (A:) Hypothetical protein HP0162 {Helicob 7e-36
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Length = 244 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

 Score =  189 bits (482), Expect = 6e-61
 Identities = 94/241 (39%), Positives = 148/241 (61%), Gaps = 4/241 (1%)

Query: 3   GHSKWANIKRKKLIVDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIP 61
           GHSKWAN + +K   DAKRGKI T+I+REL  A    G +PD N +LR A++KAL  N+ 
Sbjct: 1   GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMT 60

Query: 62  KNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKN 121
           ++ + RAI +      +++ N   + YEGY   G AI+++C+++NR RTV+ +R+ F+K 
Sbjct: 61  RDTLNRAIARGVGG--DDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKC 118

Query: 122 GGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKF 181
           GGNL  +GSV ++F   G + F     ++T+++ ALE GAED +   D  I + T+  + 
Sbjct: 119 GGNLGTDGSVAYLFSKKGVISFEKGD-EDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEM 177

Query: 182 IEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALIF 241
            +++++LE  G KA+S+ + M P T        A KL +L++ L+   DV++VY N  I 
Sbjct: 178 GKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEIS 237

Query: 242 D 242
           D
Sbjct: 238 D 238
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Length = 243 Back     information, alignment and structure
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} Length = 220 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
d1kona_244 Hypothetical protein YebC {Escherichia coli [TaxId 100.0
d1lfpa_243 Hypothetical protein aq1575 {Aquifex aeolicus [Tax 100.0
d1mw7a_220 Hypothetical protein HP0162 {Helicobacter pylori [ 100.0
d1vi7a271 Hypothetical protein YigZ, C-terminal domain {Esch 89.65
d1i1ga280 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 82.56
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: YebC-like
superfamily: YebC-like
family: YebC-like
domain: Hypothetical protein YebC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-94  Score=634.83  Aligned_cols=237  Identities=40%  Similarity=0.682  Sum_probs=222.3

Q ss_pred             CcchhHHhHHHhHHhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCCCc
Q psy8853           3 GHSKWANIKRKKLIVDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENI   81 (242)
Q Consensus         3 GHsKW~nIkh~K~~~Da~k~k~f~kl~reI~~Avk~-G~dP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~~~~~~   81 (242)
                      ||||||||||+|+++|++||++|+||+|+|++|||+ ||||+.|++||++|++||++||||++||||||||+|.  ..+.
T Consensus         1 GHsKW~nIkh~K~a~D~~k~k~f~k~~k~I~~A~k~GG~DP~~N~~L~~ai~~Ak~~nmPkd~IeraIkk~~g~--~~~~   78 (244)
T d1kona_           1 GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGG--DDDA   78 (244)
T ss_dssp             CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC--------C
T ss_pred             CCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHcCCchHHHHHHHHhccCC--CCCC
Confidence            999999999999999999999999999999999999 8999999999999999999999999999999999987  4567


Q ss_pred             ceeEEEEEEeccCCeEEEEEEecCCcchhHHHHHHHhhhcCccccCCCccccccceeeEEEECCCCChhHHHHHHHhcCC
Q psy8853          82 NYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGA  161 (242)
Q Consensus        82 ~~~~~~yEg~gPgGv~iive~lTdN~nRt~~~vr~~f~K~gg~l~~~gsv~~~F~~kG~i~v~~~~~~d~~~e~Aie~Ga  161 (242)
                      +|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|+|+|.++.. ++|++||.|||+||
T Consensus        79 ~~~e~~yEg~gp~gvaiiVe~lTDN~nRt~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~~d~l~e~aie~gA  157 (244)
T d1kona_          79 NMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKG-DEDTIMEAALEAGA  157 (244)
T ss_dssp             CCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESSS-CHHHHHHHHHHHTC
T ss_pred             ceEEEEEEEEcCCccEEEEEEecCcHHHHHHHHHHHHHHcCCeeCCCccHhhhhheeceeccCCC-CHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999865 89999999999999


Q ss_pred             cceEeecCceEEEEeCcccHHHHHHHHHHCCCceeeceeeeecCcceecCHHHHHHHHHHHHHHhcCCCcccceeccccC
Q psy8853         162 EDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDGEAIKLQKLLNELKKLHDVKKVYTNALIF  241 (242)
Q Consensus       162 eDve~~ed~~~~~~c~p~~~~~v~~~L~~~g~~v~~sel~~~P~~~v~l~~e~~~~~~~li~~Lee~dDV~~Vy~Ni~~~  241 (242)
                      +||++.+++.|+|+|+|++|.+|+++|++.||++.+++|.|+|+++|+|++++++++.+|+|.|+++||||+||||++++
T Consensus       158 eDv~~~d~~~~~i~~~~~dl~~v~~~Le~~g~~~~~aei~~~P~~~v~l~~e~~~k~~kLid~Led~DDVq~Vy~N~~i~  237 (244)
T d1kona_         158 EDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEIS  237 (244)
T ss_dssp             SEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCCCCCTTTSHHHHHHHHHHHHSSSEEEEEECCCCC
T ss_pred             chhcccCCCceEEEecchhHHHHHHHHHhcCCCceeeeEEEEeCCccccCHHHHHHHHHHHHHHhcccCcceEEECCccC
Confidence            99999777789999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q psy8853         242 D  242 (242)
Q Consensus       242 ~  242 (242)
                      |
T Consensus       238 e  238 (244)
T d1kona_         238 D  238 (244)
T ss_dssp             H
T ss_pred             H
Confidence            5
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure