Psyllid ID: psy8929

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MLNKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ
Secondary Structure (PSIPRED)
cccccccEEEEEEEEEccEEEEEEccccccccccccEEEEccccccccccccccccccccccEEEEEEEEccEEEEEEcccccccccccEEEEccccEEEEEccccccEEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEccccEEEEEcccHHHccccccEEEccccEEEEEcccHccccccccccEEEEEEEEcccEEEEccccHHHHcccccEEEcccccEccccccccccEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mlnkkhtwtkhwfvlrgcsllyyrdpkaeesgvLDGVVALNnvtslsevpvarnfgfqittwtKHWFVlrgcsllyyrdpkaeesgvLDGVVALNnvtslsevpvarnfgfqittwdsKRTILSAVTAGIRNNWMSAIKRTAAMSllddkaspssstvqq
Flexible Loop (DISEMBL)
mlnkkhtwtkhwfvlrGCSLLYYRDPKAEESGVLDGVVALNNVtslsevpvarNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVtslsevpvarnfgfqittwdskRTILSAVTAGIRNNWMSAIKRTAAmsllddkaspssstvqq
Low Complexity Region (SEG)
MLNKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ
Disordered region (IsUnstruct)
*****HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTA******************
Disordered Region (DISOPRED)
*****HTWTKHWFVLRGCSLLYY*******************VT***********GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSA***********************
Disordered Region (DISEMBL)
MLNKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLL*************
Disordered Region (DISPRO)
****KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAM****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q27421	1566	Protein outspread OS=Dros	yes	N/A	0.606	0.061	0.42	2e-20
Q99KW3	2014	TRIO and F-actin-binding	no	N/A	0.493	0.039	0.537	2e-17
Q9H2D6	2365	TRIO and F-actin-binding	no	N/A	0.493	0.033	0.537	2e-17
Q9ERE6	1029	Myosin phosphatase Rho-in	no	N/A	0.487	0.075	0.518	2e-16
P97434	1024	Myosin phosphatase Rho-in	no	N/A	0.487	0.076	0.518	2e-16
Q6WCQ1	1025	Myosin phosphatase Rho-in	no	N/A	0.487	0.076	0.518	3e-16

>sp|Q27421|OSP_DROME Protein outspread OS=Drosophila melanogaster GN=osp PE=2 SV=5

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 3/100 (3%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWDSKR 120
           W+KHWF L G +L YYRDP  EE GVLDGV+ +N++TS+   P A +   FQ+TTWD +R
Sbjct: 523 WSKHWFTLSGAALFYYRDPLCEERGVLDGVLDVNSLTSVIPEPAASKQHAFQLTTWDKQR 582

Query: 121 TILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
            +L++++   RN+W++ ++  A +  LD    P  + ++Q
Sbjct: 583 LVLASLSPSSRNSWLAVLRSAAGLPQLD--TPPKQTDIEQ 620

Drosophila melanogaster (taxid: 7227)

>sp|Q99KW3|TARA_MOUSE TRIO and F-actin-binding protein OS=Mus musculus GN=Triobp PE=1 SV=3

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 62   WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
            W KHWFVL   SL YYRD  AEE+  LDG + L + T ++E  V RN+GFQI T D+  T
Sbjct: 1456 WKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYT 1515

Query: 122  ILSAVTAGIRNNWMSAIKRT 141
             LSA+T+GIR NW+ A+++T
Sbjct: 1516 -LSAMTSGIRRNWIEALRKT 1534

May regulate actin cytoskeletal organization, cell spreading and cell contraction by directly binding and stabilizing filamentous F-actin. The localized formation of TARA and TRIO complexes coordinates the amount of F-actin present in stress fibers. May also serve as a linker protein to recruit proteins required for F-actin formation and turnover.

Mus musculus (taxid: 10090)

>sp|Q9H2D6|TARA_HUMAN TRIO and F-actin-binding protein OS=Homo sapiens GN=TRIOBP PE=1 SV=3

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 62   WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
            W KHWFVL   SL YYRD  AEE+  LDG + L + T ++E  V RN+GFQI T D+  T
Sbjct: 1807 WKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYT 1866

Query: 122  ILSAVTAGIRNNWMSAIKRT 141
             LSA+T+GIR NW+ A+++T
Sbjct: 1867 -LSAMTSGIRRNWIEALRKT 1885

May regulate actin cytoskeletal organization, cell spreading and cell contraction by directly binding and stabilizing filamentous F-actin. The localized formation of TARA and TRIO complexes coordinates the amount of F-actin present in stress fibers. May also serve as a linker protein to recruit proteins required for F-actin formation and turnover.

Homo sapiens (taxid: 9606)

>sp|Q9ERE6|MPRIP_RAT Myosin phosphatase Rho-interacting protein OS=Rattus norvegicus GN=Mprip PE=1 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
           W KHWFVL   SL YYRD  AEE+  LDG + L+    ++E PV RN+GFQI T + + T
Sbjct: 407 WKKHWFVLADQSLRYYRDSVAEEAADLDGEINLSTCYDVTEYPVQRNYGFQIHTKEGEFT 466

Query: 122 ILSAVTAGIRNNWMSAIKR 140
            LSA+T+GIR NW+  I +
Sbjct: 467 -LSAMTSGIRRNWIQTIMK 484

Targets myosin phosphatase to the actin cytoskeleton. Required for the regulation of the actin cytoskeleton by RhoA and ROCK1. Depletion leads to an increased number of stress fibers in smooth muscle cells through stabilization of actin fibers by phosphorylated myosin. Overexpression of MRIP as well as its F-actin-binding region leads to disassembly of stress fibers in neuronal cells.

Rattus norvegicus (taxid: 10116)

>sp|P97434|MPRIP_MOUSE Myosin phosphatase Rho-interacting protein OS=Mus musculus GN=Mprip PE=1 SV=2

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
           W KHWFVL   SL YYRD  AEE+  LDG + L+    ++E PV RN+GFQI T + + T
Sbjct: 402 WKKHWFVLADQSLRYYRDSVAEEAADLDGEINLSTCYDVTEYPVQRNYGFQIHTKEGEFT 461

Query: 122 ILSAVTAGIRNNWMSAIKR 140
            LSA+T+GIR NW+  I +
Sbjct: 462 -LSAMTSGIRRNWIQTIMK 479

Targets myosin phosphatase to the actin cytoskeleton. Required for the regulation of the actin cytoskeleton by RhoA and ROCK1. Depletion leads to an increased number of stress fibers in smooth muscle cells through stabilization of actin fibers by phosphorylated myosin. Overexpression of MRIP as well as its F-actin-binding region leads to disassembly of stress fibers in neuronal cells.

Mus musculus (taxid: 10090)

>sp|Q6WCQ1|MPRIP_HUMAN Myosin phosphatase Rho-interacting protein OS=Homo sapiens GN=MPRIP PE=1 SV=3

 Score = 84.3 bits (207), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
           W KHWFVL   SL YYRD  AEE+  LDG + L+    ++E PV RN+GFQI T + + T
Sbjct: 403 WKKHWFVLADQSLRYYRDSVAEEAADLDGEIDLSACYDVTEYPVQRNYGFQIHTKEGEFT 462

Query: 122 ILSAVTAGIRNNWMSAIKR 140
            LSA+T+GIR NW+  I +
Sbjct: 463 -LSAMTSGIRRNWIQTIMK 480

Targets myosin phosphatase to the actin cytoskeleton. Required for the regulation of the actin cytoskeleton by RhoA and ROCK1. Depletion leads to an increased number of stress fibers in smooth muscle cells through stabilization of actin fibers by phosphorylated myosin. Overexpression of MRIP as well as its F-actin-binding region leads to disassembly of stress fibers in neuronal cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
170046062	1340	outspread [Culex quinquefasciatus] gi|16	0.55	0.065	0.602	1e-28
328708711	1635	PREDICTED: protein outspread-like [Acyrt	0.525	0.051	0.630	5e-27
350411854	2228	PREDICTED: hypothetical protein LOC10074	0.606	0.043	0.59	2e-26
340711305	2233	PREDICTED: hypothetical protein LOC10064	0.606	0.043	0.59	2e-26
307186913	2212	Protein outspread [Camponotus floridanus	0.593	0.042	0.591	2e-26
157119504	1258	protein tara (trio-associated repeat on	0.531	0.067	0.588	3e-26
336088618	2243	protein outspread [Apis mellifera]	0.55	0.039	0.595	4e-26
332020890	2102	Protein outspread [Acromyrmex echinatior	0.618	0.047	0.56	4e-26
158298803	1302	AGAP009847-PA [Anopheles gambiae str. PE	0.612	0.075	0.520	4e-26
322795639	2014	hypothetical protein SINV_02590 [Solenop	0.518	0.041	0.619	6e-26

>gi|170046062|ref|XP_001850604.1| outspread [Culex quinquefasciatus] gi|167868966|gb|EDS32349.1| outspread [Culex quinquefasciatus]

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/88 (60%), Positives = 72/88 (81%)

Query: 58  QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWD 117
           + T W+KHWF LRG +L YYRDP AEE GVLDGV+ +N++TS++EVPV+RN+GFQ+TTWD
Sbjct: 176 RTTEWSKHWFSLRGAALFYYRDPVAEEKGVLDGVLDVNSITSIAEVPVSRNYGFQLTTWD 235

Query: 118 SKRTILSAVTAGIRNNWMSAIKRTAAMS 145
           ++R +LS VT  IRNNW++ +K  A +S
Sbjct: 236 NRRIVLSTVTISIRNNWINVLKTAAGLS 263

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708711|ref|XP_001944135.2| PREDICTED: protein outspread-like [Acyrthosiphon pisum]

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/84 (63%), Positives = 70/84 (83%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
           W KHWFVLRG +LL+YRDP AE+ G+LDGVV L+ VT++SEV V RN+GFQ  +WD K+ 
Sbjct: 400 WNKHWFVLRGSALLFYRDPTAEDQGILDGVVDLSCVTTVSEVQVNRNYGFQTISWDDKKV 459

Query: 122 ILSAVTAGIRNNWMSAIKRTAAMS 145
           ILSA+T+GIR NW+SAI+R+A ++
Sbjct: 460 ILSAITSGIRTNWVSAIRRSAGLT 483

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411854|ref|XP_003489470.1| PREDICTED: hypothetical protein LOC100747526, partial [Bombus impatiens]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 75/100 (75%), Gaps = 3/100 (3%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK-R 120
           W KHWFVLRGC L+YYRDP AE+ G++DGV+ LN VT+++ + VARN+GFQ   WD +  
Sbjct: 466 WNKHWFVLRGCGLMYYRDPCAEDKGIMDGVIDLNTVTAVTPLQVARNYGFQTVAWDDRGS 525

Query: 121 TILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
           T+LSAVTAGIR +WMSAI+R A  +L D  +S  S TV Q
Sbjct: 526 TVLSAVTAGIRASWMSAIRRAA--NLPDPDSSNDSLTVCQ 563

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711305|ref|XP_003394218.1| PREDICTED: hypothetical protein LOC100643727 [Bombus terrestris]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 75/100 (75%), Gaps = 3/100 (3%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK-R 120
           W KHWFVLRGC L+YYRDP AE+ G++DGV+ LN VT+++ + VARN+GFQ   WD +  
Sbjct: 471 WNKHWFVLRGCGLMYYRDPCAEDKGIMDGVIDLNTVTAVTPLQVARNYGFQTVAWDDRGS 530

Query: 121 TILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
           T+LSAVTAGIR +WMSAI+R A  +L D  +S  S TV Q
Sbjct: 531 TVLSAVTAGIRASWMSAIRRAA--NLPDPDSSNDSLTVCQ 568

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186913|gb|EFN72300.1| Protein outspread [Camponotus floridanus]

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/98 (59%), Positives = 75/98 (76%), Gaps = 3/98 (3%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK-R 120
           W KHWFVLRGC L+YYRDP AE+ G++DGV+ LN VT+++ + VARN+GFQ   WD +  
Sbjct: 443 WNKHWFVLRGCGLMYYRDPCAEDKGIMDGVIDLNTVTAVTPLQVARNYGFQTVAWDDRGN 502

Query: 121 TILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTV 158
           T+LSAVTAGIR++WMSAIKR A  +L D  ++  S TV
Sbjct: 503 TVLSAVTAGIRSSWMSAIKRAA--NLPDPDSNMDSLTV 538

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119504|ref|XP_001659410.1| protein tara (trio-associated repeat on actin) [Aedes aegypti] gi|108875315|gb|EAT39540.1| AAEL008670-PA, partial [Aedes aegypti]

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/85 (58%), Positives = 69/85 (81%)

Query: 60  TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK 119
           + W+K+WF LRG +L YYRDP AEE GVLDGV+ +N++TS++EVPVARN+GFQ+TTWD++
Sbjct: 173 SDWSKYWFSLRGAALFYYRDPVAEEKGVLDGVLDVNSITSITEVPVARNYGFQLTTWDNR 232

Query: 120 RTILSAVTAGIRNNWMSAIKRTAAM 144
           R +LS VT   RNNW++ +K  A +
Sbjct: 233 RIVLSTVTISNRNNWINVLKNAAGL 257

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|336088618|ref|NP_001229503.1| protein outspread [Apis mellifera]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 1/89 (1%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK-R 120
           W KHWFVLRGC L+YYRDP AE+ G++DGV+ LN VT+++ + VARN+GFQ   WD +  
Sbjct: 479 WNKHWFVLRGCGLMYYRDPCAEDKGIMDGVIDLNTVTAVTPLQVARNYGFQTVAWDDRGS 538

Query: 121 TILSAVTAGIRNNWMSAIKRTAAMSLLDD 149
           T+LSAVTAGIR +WMSAI+R A +   D+
Sbjct: 539 TVLSAVTAGIRASWMSAIRRAANLPDPDN 567

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020890|gb|EGI61288.1| Protein outspread [Acromyrmex echinatior]

 Score =  122 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/100 (56%), Positives = 73/100 (73%), Gaps = 1/100 (1%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK-R 120
           W KHWFVLRGC L+YYRDP AE+ G++DGV+ LN VT+++ + VARN+GFQ   WD +  
Sbjct: 334 WNKHWFVLRGCGLMYYRDPCAEDKGIMDGVIDLNTVTAVTPLQVARNYGFQTVAWDDRGS 393

Query: 121 TILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
           T+LSAVTAGIR++WMSAI+R A +   D   S +  T  Q
Sbjct: 394 TVLSAVTAGIRSSWMSAIRRAANLPDPDSNDSLTVCTDTQ 433

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158298803|ref|XP_318960.4| AGAP009847-PA [Anopheles gambiae str. PEST] gi|157014061|gb|EAA14216.4| AGAP009847-PA [Anopheles gambiae str. PEST]

 Score =  122 bits (306), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/98 (52%), Positives = 71/98 (72%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
           W+KHWF LRG +L YYRDP AEE GVLDGV+ +N++T ++EVPV + +GFQ+TTWD+ R 
Sbjct: 188 WSKHWFTLRGAALFYYRDPVAEEKGVLDGVLDVNSITGIAEVPVNKGYGFQLTTWDNHRI 247

Query: 122 ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQ 159
           +LSAVT  +RNNW++ +K  A +         S+S+ Q
Sbjct: 248 VLSAVTINVRNNWINVLKNAAGLPPTKATLELSTSSSQ 285

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795639|gb|EFZ18318.1| hypothetical protein SINV_02590 [Solenopsis invicta]

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/84 (61%), Positives = 68/84 (80%), Gaps = 1/84 (1%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK-R 120
           W KHWFVLRGC L+YYRDP AE+ G++DGV+ LN VT+++ + VARN+GFQ   WD +  
Sbjct: 346 WNKHWFVLRGCGLMYYRDPCAEDKGIMDGVIDLNTVTAVTPLQVARNYGFQTVAWDDRGS 405

Query: 121 TILSAVTAGIRNNWMSAIKRTAAM 144
           T+LSAVTAGIR++WMSAI+R A +
Sbjct: 406 TVLSAVTAGIRSSWMSAIRRAANL 429

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
FB|FBgn0003016	1566	osp "outspread" [Drosophila me	0.606	0.061	0.42	2.6e-20
UNIPROTKB|F6TR96	265	TRIOBP "TRIO and F-actin-bindi	0.587	0.354	0.484	2.2e-18
UNIPROTKB|F6WYE2	256	TRIOBP "TRIO and F-actin-bindi	0.587	0.367	0.484	2.2e-18
UNIPROTKB|F2Z2W0	431	TRIOBP "TRIO and F-actin-bindi	0.587	0.218	0.484	8.6e-18
RGD|1308485	402	Triobp "TRIO and F-actin bindi	0.493	0.196	0.537	1.4e-17
MGI|MGI:1349438	1024	Mprip "myosin phosphatase Rho	0.487	0.076	0.518	2e-17
RGD|619947	1029	Mprip "myosin phosphatase Rho	0.487	0.075	0.518	2.1e-17
UNIPROTKB|Q9ERE6	1029	Mprip "Myosin phosphatase Rho-	0.487	0.075	0.518	2.1e-17
UNIPROTKB|D4A936	1037	Mprip "Myosin phosphatase Rho-	0.487	0.075	0.518	2.1e-17
UNIPROTKB|F8W6V6	652	TRIOBP "TRIO and F-actin-bindi	0.587	0.144	0.484	2.3e-17

FB|FBgn0003016 osp "outspread" [Drosophila melanogaster (taxid:7227)]

 Score = 241 (89.9 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
 Identities = 42/100 (42%), Positives = 66/100 (66%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWDSKR 120
             W+KHWF L G +L YYRDP  EE GVLDGV+ +N++TS+   P A +   FQ+TTWD +R
Sbjct:   523 WSKHWFTLSGAALFYYRDPLCEERGVLDGVLDVNSLTSVIPEPAASKQHAFQLTTWDKQR 582

Query:   121 TILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
              +L++++   RN+W++ ++  A +  LD    P  + ++Q
Sbjct:   583 LVLASLSPSSRNSWLAVLRSAAGLPQLD--TPPKQTDIEQ 620

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F6TR96 TRIOBP "TRIO and F-actin-binding protein" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 46/95 (48%), Positives = 60/95 (63%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
             W KHWFVL   SL YYRD  AEE+  LDG + L + T ++E  V RN+GFQI T D+  T
Sbjct:    53 WKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYT 112

Query:   122 ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
              LSA+T+GIR NW+ A+++T   +   D    S S
Sbjct:   113 -LSAMTSGIRRNWIEALRKTVRPTSAPDVTKLSDS 146

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F6WYE2 TRIOBP "TRIO and F-actin-binding protein" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 46/95 (48%), Positives = 60/95 (63%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
             W KHWFVL   SL YYRD  AEE+  LDG + L + T ++E  V RN+GFQI T D+  T
Sbjct:    23 WKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYT 82

Query:   122 ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
              LSA+T+GIR NW+ A+++T   +   D    S S
Sbjct:    83 -LSAMTSGIRRNWIEALRKTVRPTSAPDVTKLSDS 116

GO:0005543 "phospholipid binding" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

UNIPROTKB|F2Z2W0 TRIOBP "TRIO and F-actin-binding protein" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 46/95 (48%), Positives = 60/95 (63%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
             W KHWFVL   SL YYRD  AEE+  LDG + L + T ++E  V RN+GFQI T D+  T
Sbjct:    94 WKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYT 153

Query:   122 ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
              LSA+T+GIR NW+ A+++T   +   D    S S
Sbjct:   154 -LSAMTSGIRRNWIEALRKTVRPTSAPDVTKLSDS 187

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1308485 Triobp "TRIO and F-actin binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 219 (82.2 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 43/80 (53%), Positives = 56/80 (70%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
             W KHWFVL   SL YYRD  AEE+  LDG + L + T ++E  V RN+GFQI T D+  T
Sbjct:    64 WKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYT 123

Query:   122 ILSAVTAGIRNNWMSAIKRT 141
              LSA+T+GIR NW+ A+++T
Sbjct:   124 -LSAMTSGIRRNWIEALRKT 142

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=ISO

MGI|MGI:1349438 Mprip "myosin phosphatase Rho interacting protein" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
 Identities = 41/79 (51%), Positives = 53/79 (67%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
             W KHWFVL   SL YYRD  AEE+  LDG + L+    ++E PV RN+GFQI T + + T
Sbjct:   402 WKKHWFVLADQSLRYYRDSVAEEAADLDGEINLSTCYDVTEYPVQRNYGFQIHTKEGEFT 461

Query:   122 ILSAVTAGIRNNWMSAIKR 140
              LSA+T+GIR NW+  I +
Sbjct:   462 -LSAMTSGIRRNWIQTIMK 479

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

RGD|619947 Mprip "myosin phosphatase Rho interacting protein" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 41/79 (51%), Positives = 53/79 (67%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
             W KHWFVL   SL YYRD  AEE+  LDG + L+    ++E PV RN+GFQI T + + T
Sbjct:   407 WKKHWFVLADQSLRYYRDSVAEEAADLDGEINLSTCYDVTEYPVQRNYGFQIHTKEGEFT 466

Query:   122 ILSAVTAGIRNNWMSAIKR 140
              LSA+T+GIR NW+  I +
Sbjct:   467 -LSAMTSGIRRNWIQTIMK 484

GO:0003779 "actin binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|Q9ERE6 Mprip "Myosin phosphatase Rho-interacting protein" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 41/79 (51%), Positives = 53/79 (67%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
             W KHWFVL   SL YYRD  AEE+  LDG + L+    ++E PV RN+GFQI T + + T
Sbjct:   407 WKKHWFVLADQSLRYYRDSVAEEAADLDGEINLSTCYDVTEYPVQRNYGFQIHTKEGEFT 466

Query:   122 ILSAVTAGIRNNWMSAIKR 140
              LSA+T+GIR NW+  I +
Sbjct:   467 -LSAMTSGIRRNWIQTIMK 484

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|D4A936 Mprip "Myosin phosphatase Rho-interacting protein" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 41/79 (51%), Positives = 53/79 (67%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
             W KHWFVL   SL YYRD  AEE+  LDG + L+    ++E PV RN+GFQI T + + T
Sbjct:   402 WKKHWFVLADQSLRYYRDSVAEEAADLDGEINLSTCYDVTEYPVQRNYGFQIHTKEGEFT 461

Query:   122 ILSAVTAGIRNNWMSAIKR 140
              LSA+T+GIR NW+  I +
Sbjct:   462 -LSAMTSGIRRNWIQTIMK 479

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F8W6V6 TRIOBP "TRIO and F-actin-binding protein" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 46/95 (48%), Positives = 60/95 (63%)

Query:    62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
             W KHWFVL   SL YYRD  AEE+  LDG + L + T ++E  V RN+GFQI T D+  T
Sbjct:    94 WKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYT 153

Query:   122 ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
              LSA+T+GIR NW+ A+++T   +   D    S S
Sbjct:   154 -LSAMTSGIRRNWIEALRKTVRPTSAPDVTKLSDS 187

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	160
cd13275	103	cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interac	6e-45
smart00233	102	smart00233, PH, Pleckstrin homology domain	4e-14
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	3e-10
smart00233	102	smart00233, PH, Pleckstrin homology domain	4e-10
pfam00169	101	pfam00169, PH, PH domain	4e-10
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	9e-09
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	6e-08
cd13272	116	cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bis	8e-08
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	2e-07
cd13273	110	cd13273, PH_SWAP-70, Switch-associated protein-70	1e-06
cd13281	139	cd13281, PH_PLEKHD1, Pleckstrin homology (PH) doma	1e-06
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	3e-06
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	4e-06
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	4e-06
cd13279	91	cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) d	5e-06
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	7e-06
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	9e-06
pfam00169	101	pfam00169, PH, PH domain	1e-05
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	1e-05
cd01263	119	cd01263, PH_anillin, Anillin Pleckstrin homology (	1e-05
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	2e-05
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	2e-05
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	2e-05
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	2e-05
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	2e-05
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	7e-05
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	8e-05
cd13247	125	cd13247, BAR-PH_APPL, Adaptor protein containing P	2e-04
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	3e-04
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	3e-04
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	4e-04
cd13308	113	cd13308, PH_3BP2, SH3 domain-binding protein 2 Ple	4e-04
cd13302	109	cd13302, PH2_Pleckstrin_2, Pleckstrin 2 Pleckstrin	4e-04
cd13279	91	cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) d	5e-04
cd01251	105	cd01251, PH2_ADAP, ArfGAP with dual PH domains Ple	6e-04
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	0.001
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	0.003
cd13273	110	cd13273, PH_SWAP-70, Switch-associated protein-70	0.004
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	0.004

>gnl|CDD|241429 cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain

 Score =  142 bits (361), Expect = 6e-45
 Identities = 51/88 (57%), Positives = 66/88 (75%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
           W KHWFVLR  SL YYRD  AEE+G LDGV+ L+  T+++E+PV RN+GFQI TWD KR 
Sbjct: 14  WKKHWFVLRDASLRYYRDSVAEEAGELDGVIDLSTCTNVTELPVQRNYGFQIKTWDGKRY 73

Query: 122 ILSAVTAGIRNNWMSAIKRTAAMSLLDD 149
           +LSA+T+GIR NW+ AI++ A +    D
Sbjct: 74  VLSAMTSGIRRNWIQAIRKAAGLPSTPD 101

M-RIP is proposed to play a role in myosin phosphatase regulation by RhoA. M-RIP contains 2 PH domains followed by a Rho binding domain (Rho-BD), and a C-terminal myosin binding subunit (MBS) binding domain (MBS-BD). The amino terminus of M-RIP with its adjacent PH domains and polyproline motifs mediates binding to both actin and Galpha. M-RIP brings RhoA and MBS into close proximity where M-RIP can target RhoA to the myosin phosphatase complex to regulate the myosin phosphorylation state. M-RIP does this via its C-terminal coiled-coil domain which interacts with the MBS leucine zipper domain of myosin phosphatase, while its Rho-BD, directly binds RhoA in a nucleotide-independent manner. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 64.1 bits (156), Expect = 4e-14
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQITTWD 117
           +W K +FVL   +LLYY+  K ++S    G + L+  T   +       +   F+I T D
Sbjct: 17  SWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCTVREAPDPDSSKKPHCFEIKTSD 76

Query: 118 SKRTILSAVTAGIRNNWMSAIKRTAA 143
            K  +L A +   R  W+ A+++  A
Sbjct: 77  RKTLLLQAESEEEREKWVEALRKAIA 102

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 53.5 bits (128), Expect = 3e-10
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQIT 114
           G  + +W K WFVL    LLYY+  K + S    G++ L++   +  V    +   F++ 
Sbjct: 10  GKGLKSWKKRWFVLFDDVLLYYKSKK-DSSKKPKGLIPLSDGLEVELVSSSGKPNCFELV 68

Query: 115 T-WDSKRTILSAVTAGIRNNWMSA 137
           T    +   L A +   R  W+ A
Sbjct: 69  TPDRGRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQI 59
            K +W K +FVL   +LLYY+  K ++S    G + L+  T   +       +   F+I
Sbjct: 13 GGKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCTVREAPDPDSSKKPHCFEI 72

Query: 60 TTWTKHWFVLR 70
           T  +   +L+
Sbjct: 73 KTSDRKTLLLQ 83

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQITTWD 117
           +W K +FVL    LLYY+D K + S    G + L+              R   F+I T D
Sbjct: 17  SWKKRYFVLFDGVLLYYKDSK-KSSSRPKGSIPLSGCQVTKVPDSEDGKRKNCFEIRTGD 75

Query: 118 SKRTILSAVTAGIRNNWMSAIKRTAA 143
            +  +L A +   R  W+ AI+    
Sbjct: 76  RETFLLQAESEEERKEWVKAIRSAIR 101

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 50.6 bits (122), Expect = 9e-09
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 14/86 (16%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLD-----GVVALNNVTSLSEVPVARN-FGFQITT 115
           + ++WFVL+G  L +YR          D     G + L    S       +    F+ITT
Sbjct: 45  YNRYWFVLKGDVLSWYRSST-------DLYFPHGTIDLRYGISAEITDKDKETTHFKITT 97

Query: 116 WDSKRTILSAVTAGIRNNWMSAIKRT 141
            +S+     A +      W+ A+++ 
Sbjct: 98  -NSRTYTFKADSEPSAKEWVKALQKV 122

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 47.6 bits (114), Expect = 6e-08
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQITTWDS 118
           W K WFVL+   L YY+DP+ E+   L G + L + T   +     + R F F+      
Sbjct: 24  WKKRWFVLKDNCLYYYKDPEEEK--AL-GSILLPSYTISPASPSDEINRKFAFKAEHAGM 80

Query: 119 KRTILSAVTAGIRNNWMSAIKRTA 142
           +    +A T      WM A+   A
Sbjct: 81  RTYYFAADTQEEMEQWMKALSLAA 104

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|241426 cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bisphosphate 4-phosphatase and Type II inositol 3,4-bisphosphate 4-phosphatase Pleckstrin homology (PH) domain

 Score = 47.6 bits (114), Expect = 8e-08
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 63  TKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTI 122
            + WF LRG  L Y++      S    GV+ L N     E P    F F +   D K+  
Sbjct: 16  KERWFKLRGNLLFYFKS-NEPGSEPA-GVIVLENCRVQREEPDPGGFAFSLVFKDEKKYR 73

Query: 123 LSAVTAGIRNNWMSAIKR 140
            S  +   R+ W+ AIK+
Sbjct: 74  FSCRSEEERDEWIEAIKQ 91

INPP4A (also called Inositol polyphosphate 4-phosphatase type I) and INPP4B (also called Inositol polyphosphate 4-phosphatase type II) both catalyze the hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate and inositol 1,3,4-trisphosphate. They differ in that INPP4A additionally catalyzes the hydrolysis of the 4-position phosphate of inositol 3,4-bisphosphate, while INPP4B catalyzes the hydrolysis of the 4-position phosphate of inositol 1,4-bisphosphate. They both have a single PH domain followed by a C2 domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
           G ++ TW + WFVL+   L YY+ P         G +AL+   S           F+I T
Sbjct: 9   GGKVKTWKRRWFVLKNGELFYYKSPNDVIRKPQ-GQIALD--GSCEIARAEGAQTFEIVT 65

Query: 116 WDSKRT-ILSAVTAGIRNNWMSAI 138
              KRT  L+A +    + W+  I
Sbjct: 66  --EKRTYYLTADSENDLDEWIRVI 87

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin homology (PH) domain

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN---VTSLSEVPVARNFGFQ 112
           G  + TW + WFVL+  SL YY+    +E     G +AL++   V SL +    +   F 
Sbjct: 18  GHLLPTWRERWFVLKPNSLSYYKSEDLKEK---KGEIALDSNCCVESLPDREGKKCR-FC 73

Query: 113 ITTWDSKRTI-LSAVTAGIRNNWMSAIKRTAAMS 145
           + T    +T  LSA     R  W+ AI+    +S
Sbjct: 74  VKT--PDKTYELSASDHKTRQEWIQAIQTAIRLS 105

SWAP-70 (also called Differentially expressed in FDCP 6/DEF-6 or IRF4-binding protein) functions in cellular signal transduction pathways (in conjunction with Rac), regulates cell motility through actin rearrangement, and contributes to the transformation and invasion activity of mouse embryo fibroblasts. Metazoan SWAP-70 is found in B lymphocytes, mast cells, and in a variety of organs. Metazoan SWAP-70 contains an N-terminal EF-hand motif, a centrally located PH domain, and a C-terminal coiled-coil domain. The PH domain of Metazoan SWAP-70 contains a phosphoinositide-binding site and a nuclear localization signal (NLS), which localize SWAP-70 to the plasma membrane and nucleus, respectively. The NLS is a sequence of four Lys residues located at the N-terminus of the C-terminal a-helix; this is a unique characteristic of the Metazoan SWAP-70 PH domain. The SWAP-70 PH domain binds PtdIns(3,4,5)P3 and PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There are additional plant SWAP70 proteins, but these are not included in this hierarchy. Rice SWAP70 (OsSWAP70) exhibits GEF activity toward the its Rho GTPase, OsRac1, and regulates chitin-induced production of reactive oxygen species and defense gene expression in rice. Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP- and effector-triggered immunity. Plant SWAP70 contains both DH and PH domains, but their arrangement is the reverse of that in typical DH-PH-type Rho GEFs, wherein the DH domain is flanked by a C-terminal PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241435 cd13281, PH_PLEKHD1, Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 45  SLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA---EESGVLD----GVVALNNV 97
            LS V   R FG Q   W+K +FVL+ C LLYY + +    E++   +    GV+ L   
Sbjct: 13  QLSGVLWKRPFGRQSAKWSKRFFVLKECFLLYYAESEKKDFEKTRRFNIHPKGVIPLGGC 72

Query: 98  TSLSEVPVARNFGFQITTWDSKRTI-LSAVTAGIRNNWMSAIK 139
           +  +     R + F I+  D K +I L+A +   + +W+  ++
Sbjct: 73  SIEAGRDPGRPYCFLISHPDFKGSIILAADSEEEQESWLDMLR 115

Human PLEKHD1 (also called UPF0639, pleckstrin homology domain containing, family D (with M protein repeats) member 1) is a single transcript and contains a single PH domain. PLEKHD1 is conserved in human, chimpanzee, , dog, cow, mouse, chicken, zebrafish, and Caenorhabditis elegans. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARN-FGFQITTWDSK 119
           TW K WFVLR   L YY++ K  E  +L  ++ L ++ + +EV + ++   F I T    
Sbjct: 21  TWKKRWFVLRPTKLAYYKNDK--EYRLLR-LIDLTDIHTCTEVQLKKHDNTFGIVT--PA 75

Query: 120 RTI-LSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
           RT  + A +     +W+SAI    A   L    +P++
Sbjct: 76  RTFYVQADSKAEMESWISAINL--ARQALRATITPNT 110

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITT 61
              +W K WFVL    LLYY+  K + S    G++ L++   +  V    +   F++ T
Sbjct: 11 KGLKSWKKRWFVLFDDVLLYYKSKK-DSSKKPKGLIPLSDGLEVELVSSSGKPNCFELVT 69

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKR 120
           TW K WFVLR C L YY+D   +E  +   V+ L+ +T+++ +   +        +   +
Sbjct: 21  TWKKRWFVLRPCQLSYYKD--EKEYKLRR-VINLSELTAVAPLKDKK-RKNVFAIYTPSK 76

Query: 121 TI-LSAVTAGIRNNWMSAIKRTAAM 144
                A +    N W+ AI+  +  
Sbjct: 77  NYHFQASSEKDANEWVEAIREESRS 101

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241433 cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) domain

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
           G     W+K + VLR  SL +Y   K E S      + L +++++S     + + F+I  
Sbjct: 13  GLLSFRWSKRYLVLREQSLDFY---KNESSSSASLSIPLKDISNVSRTD-LKPYCFEIVR 68

Query: 116 WDSKRTILSAV 126
             S ++I  +V
Sbjct: 69  KSSTKSIYISV 79

Budding yeast contain two main p21-activated kinases (PAKs), Cla4 and Ste20. The yeast Ste20 protein kinase is involved in pheromone response, though the function of Ste20 mammalian homologs is unknown. Cla4 is involved in budding and cytokinesis and interacts with Cdc42, a GTPase required for polarized cell growth as is Pak. Cla4 and Ste20 kinases share a function in localizing cell growth with respect to the septin ring. They both contain a PH domain, a Cdc42/Rac interactive binding (CRIB) domain, and a C-terminal Protein Kinase catalytic (PKc) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 91

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 4  KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR-NFGFQITTW 62
          K  TW K WFVLR C L YY+D   +E  +   V+ L+ +T+++ +   +    F I T 
Sbjct: 18 KTKTWKKRWFVLRPCQLSYYKD--EKEYKLRR-VINLSELTAVAPLKDKKRKNVFAIYTP 74

Query: 63 TKHWFVLR 70
          +K++    
Sbjct: 75 SKNYHFQA 82

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 59  ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS--EVPVARNFGFQITTW 116
           I TW + WFVL+   L Y++D          GV+ L++  ++   E    + F F+++T 
Sbjct: 20  IKTWRRRWFVLKQGKLFYFKDED--PDSEPRGVIDLSDCLTVKSAEEATNKEFAFEVSTP 77

Query: 117 DSKRTILSAVTAGIRNNWMSAIKR 140
           +     L A +   +  W+SAI R
Sbjct: 78  ERTF-YLIADSEKEKEEWISAIGR 100

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQI 59
            + +W K +FVL    LLYY+D K + S    G + L+              R   F+I
Sbjct: 13 GGRKSWKKRYFVLFDGVLLYYKDSK-KSSSRPKGSIPLSGCQVTKVPDSEDGKRKNCFEI 71

Query: 60 TT--WTKHWF 67
           T        
Sbjct: 72 RTGDRETFLL 81

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 17/70 (24%)

Query: 2  LNKKHT----WTKHWFVLRGCSLLYYRDPKAEESGVLD-----GVVALNNVTSLSEVPVA 52
          L+K+      + ++WFVL+G  L +YR          D     G + L    S       
Sbjct: 35 LSKRGKRTPRYNRYWFVLKGDVLSWYRSST-------DLYFPHGTIDLRYGISAEITDKD 87

Query: 53 RN-FGFQITT 61
          +    F+ITT
Sbjct: 88 KETTHFKITT 97

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241294 cd01263, PH_anillin, Anillin Pleckstrin homology (PH) domain

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 60  TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----ARNFGFQIT 114
             W + W VLRG  L +++ P+ EE     G + L    +    P      AR   F++ 
Sbjct: 18  GAWHRRWCVLRGGYLSFWKYPEDEEKKKPIGSIDLRKCINEKVEPASRELCARPNTFELE 77

Query: 115 TW----------DSKRTILSAVTAGIRNNWMSAIKRTAA 143
           T           + KR +LSA T   R  W+ A+ +T A
Sbjct: 78  TLRPAEDSDGTNEKKRVLLSADTKEERIEWLDALNQTLA 116

Anillin (Rhotekin/RTKN; also called PLEKHK/Pleckstrin homology domain-containing family K) is an actin binding protein involved in cytokinesis. It interacts with GTP-bound Rho proteins and results in the inhibition of their GTPase activity. Dysregulation of the Rho signal transduction pathway has been implicated in many forms of cancer. Anillin proteins have a N-terminal HRI domain/ACC (anti-parallel coiled-coil) finger domain or Rho-binding domain binds small GTPases from the Rho family. The C-terminal PH domain helps target anillin to ectopic septin containing foci. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 119

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 8  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQIT 60
          W K WFVL+   L YY+DP+ E+   L G + L + T   +     + R F F+  
Sbjct: 24 WKKRWFVLKDNCLYYYKDPEEEK--AL-GSILLPSYTISPASPSDEINRKFAFKAE 76

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQIT-- 114
            W + WFVLRG  L YY+D   +ES    G + L   T + E+P        F F+I   
Sbjct: 18  NWQRRWFVLRGDQLYYYKDE--DESKPQ-GCIPLPGNT-VKELPFNPEEPGKFLFEIIPG 73

Query: 115 TWDSKRT------ILSAVTAGIRNNWMSAIKR 140
              ++R+      +L A +      W+  I+R
Sbjct: 74  DGGTRRSANHDSYLLMANSQAEMEEWVKVIRR 105

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 59  ITTWTKHWFVL--RGCSLLYYRDPK-AEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
           + TW   WFV   R C L YYR P+     G +D   A     + S  P A    F+I T
Sbjct: 15  LKTWKSRWFVFDERKCQLYYYRSPQDITPLGSIDLSGA-----AFSYDPEAEKGTFEIHT 69

Query: 116 WDSKRTILSAVTAGIRNNWMSAIKRT 141
              +  IL A        W+  ++  
Sbjct: 70  -PGRVYILKASDRQAMLYWLQELQSK 94

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKR 120
           TW + WF ++   L+Y +  K +   V+   + L  V    +  + R F F++ +  +K 
Sbjct: 15  TWKRRWFSIQNGQLVYQKRFKKDTPTVVVEDLRLCTVKPCED--IDRRFCFEVVS-PTKS 71

Query: 121 TILSAVTAGIRNNWMSAIKRTAAMSL 146
            +L A +   R  W+ AI+   A +L
Sbjct: 72  YMLQAESEEDRQAWIQAIQAAIASAL 97

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 24/105 (22%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQI- 113
           G ++ +W + WF+L    L Y+     +E     G++ L N+ S+ EV    + F F++ 
Sbjct: 13  GGRVKSWKRRWFILTDNCLYYFEYTTDKE---PRGIIPLENL-SVREVEDSKKPFCFELY 68

Query: 114 -----------TTWDSK-----RTI--LSAVTAGIRNNWMSAIKR 140
                      T  D K      T+  +SA T    + W+ +IK 
Sbjct: 69  SPSNEVIKACKTDSDGKVVEGNHTVYRISAATEEEMDEWIKSIKA 113

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 53  RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT-SLSEVPVARNFGF 111
           RN  +Q     K WFVL+G  L Y+      E     GV+ L   T  LSE      + F
Sbjct: 20  RNTSYQ-----KRWFVLKGNLLFYFEKKGDRE---PLGVIVLEGCTVELSEDEE--PYAF 69

Query: 112 QITTWDSK-RT-ILSAVTAGIRNNWMSAIKRT 141
            I       R+ +L+A +     +WM A+ R 
Sbjct: 70  AIRFDGPGSRSYVLAAESQEDMESWMKALSRA 101

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
           GF    W ++WFVL+G SL +Y +P+ E++   +G + L +          + + F+ + 
Sbjct: 27  GFFGQKWKRYWFVLKGSSLYWYNNPQDEKA---EGFINLPDFKIERASECKKKYAFKASH 83

Query: 116 WDSKRTILSAVTAGIRNNWMS 136
              K    +A      N W+S
Sbjct: 84  PKIKTFYFAAENLDDMNKWLS 104

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241401 cd13247, BAR-PH_APPL, Adaptor protein containing PH domain, PTB domain, and Leucine zipper motif Bin1/amphiphysin/Rvs167 (BAR)-Pleckstrin homology (PH) domain

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 60  TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK 119
             W + +F  +G +L+    P+ E +G L  V+ L+N +  +     R F FQIT+ D K
Sbjct: 44  NRWDRVYFFTQGGNLMS--QPRDEVAGSL--VLDLDNTSVQAADCEDRRFVFQITSPDGK 99

Query: 120 RT-ILSAVTAGIRNNWMSAIKRTAA 143
           +  +L A +   R  W++ I   + 
Sbjct: 100 KAIVLQAESEKDREEWIATINNISQ 124

APPL (also called DCC-interacting protein (DIP)-13alpha) interacts with oncoprotein serine/threonine kinase AKT2, tumor suppressor protein DCC (deleted in colorectal cancer), Rab5, GIPC (GAIP-interacting protein, C terminus), human follicle-stimulating hormone receptor (FSHR), and the adiponectin receptors AdipoR1 and AdipoR2. There are two isoforms of human APPL: APPL1 and APPL2, which share about 50% sequence identity. APPL has a BAR and a PH domain near its N terminus, and the two domains are thought to function as a unit (BAR-PH domain). C-terminal to this is a PTB domain. Lipid binding assays show that the BAR, PH, and PTB domains can bind phospholipids. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 7  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS--EVPVARNFGFQITTWTK 64
          TW + WFVL+   L Y++D          GV+ L++  ++   E    + F F+++T  +
Sbjct: 22 TWRRRWFVLKQGKLFYFKDED--PDSEPRGVIDLSDCLTVKSAEEATNKEFAFEVSTPER 79

Query: 65 HWF 67
           ++
Sbjct: 80 TFY 82

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 8  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQIT 60
          W ++WFVL+G SL +Y +P+ E++   +G + L +          + + F+ +
Sbjct: 33 WKRYWFVLKGSSLYWYNNPQDEKA---EGFINLPDFKIERASECKKKYAFKAS 82

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 7  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHW 66
          TW + WFVL+   L YY+ P         G +AL+   S           F+I T  K  
Sbjct: 14 TWKRRWFVLKNGELFYYKSPNDVIRKPQ-GQIALD--GSCEIARAEGAQTFEIVT-EKRT 69

Query: 67 FVL 69
          + L
Sbjct: 70 YYL 72

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology (PH) domain

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 57  FQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALN--NVTSLSEVPVARNFGFQIT 114
            Q+  W   + ++    + Y+++ ++ +     GV +LN  N  +  E    + F F+I 
Sbjct: 23  KQLLKWPLRYVIIHKGCVYYFKNSQSAKP---KGVFSLNGYNRRAAEETTSKKKFVFKII 79

Query: 115 -TWDSKRT-ILSAVTAGIRNNWMSAIKR 140
                 RT   SA +      WM ++++
Sbjct: 80  HLSKDHRTWYFSAKSEDEMKEWMESLRK 107

SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241456 cd13302, PH2_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 2

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 56  GFQITTWTKHWFVLRGC-SLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFG-- 110
           G +   W    FVLR   + L+Y DP   E  +  G + L    VT++ +          
Sbjct: 17  GHRRKNWKVRKFVLRDDPAYLHYYDPAKGEDPL--GAIHLRGCVVTAVEDNSNPAKGSVE 74

Query: 111 ---FQITTWDSKRTILSAVTAGIRNNWMSAIKRTA 142
              F+I T D     L A T   R  W+ AI+  +
Sbjct: 75  GNLFEIITADEVHYYLQAATPAERTEWIKAIQMAS 109

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 109

>gnl|CDD|241433 cd13279, PH_Cla4_Ste20, Pleckstrin homology (PH) domain

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 7  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT--WTK 64
           W+K + VLR  SL +Y   K E S      + L +++++S     + + F+I     TK
Sbjct: 18 RWSKRYLVLREQSLDFY---KNESSSSASLSIPLKDISNVSRTD-LKPYCFEIVRKSSTK 73

Query: 65 HWFV 68
            ++
Sbjct: 74 SIYI 77

Budding yeast contain two main p21-activated kinases (PAKs), Cla4 and Ste20. The yeast Ste20 protein kinase is involved in pheromone response, though the function of Ste20 mammalian homologs is unknown. Cla4 is involved in budding and cytokinesis and interacts with Cdc42, a GTPase required for polarized cell growth as is Pak. Cla4 and Ste20 kinases share a function in localizing cell growth with respect to the septin ring. They both contain a PH domain, a Cdc42/Rac interactive binding (CRIB) domain, and a C-terminal Protein Kinase catalytic (PKc) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 91

>gnl|CDD|241282 cd01251, PH2_ADAP, ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 2

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 22/97 (22%)

Query: 58  QITTWTKHWFVLRGCSLLYYRDP-------------KAEESGVLDGVVALNNVTSLSEVP 104
           Q   + K WF L    L+Y++DP             K E   V +G+ A         + 
Sbjct: 15  QTDGFRKRWFTLDDRRLMYFKDPLDAFPKGEIFIGSKEEGYSVREGLPA--------GIK 66

Query: 105 VARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
               FGF + T D +  +LSA T   R  W++AI++ 
Sbjct: 67  GHWGFGFTLVTPD-RTFVLSAETEEERREWITAIQKV 102

ADAP (also called centaurin alpha) is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 7  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQI 59
          +W + WF+L    L Y+     +E     G++ L N+ S+ EV    + F F++
Sbjct: 18 SWKRRWFILTDNCLYYFEYTTDKE---PRGIIPLENL-SVREVEDSKKPFCFEL 67

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 7  TWTKHWFVL--RGCSLLYYRDPK-AEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 61
          TW   WFV   R C L YYR P+     G +D   A     + S  P A    F+I T
Sbjct: 17 TWKSRWFVFDERKCQLYYYRSPQDITPLGSIDLSGA-----AFSYDPEAEKGTFEIHT 69

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin homology (PH) domain

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)

Query: 1  MLNKKH---TWTKHWFVLRGCSLLYYRDP 26
          +  K H   TW + WFVL+  SL YY+  
Sbjct: 14 LWKKGHLLPTWRERWFVLKPNSLSYYKSE 42

SWAP-70 (also called Differentially expressed in FDCP 6/DEF-6 or IRF4-binding protein) functions in cellular signal transduction pathways (in conjunction with Rac), regulates cell motility through actin rearrangement, and contributes to the transformation and invasion activity of mouse embryo fibroblasts. Metazoan SWAP-70 is found in B lymphocytes, mast cells, and in a variety of organs. Metazoan SWAP-70 contains an N-terminal EF-hand motif, a centrally located PH domain, and a C-terminal coiled-coil domain. The PH domain of Metazoan SWAP-70 contains a phosphoinositide-binding site and a nuclear localization signal (NLS), which localize SWAP-70 to the plasma membrane and nucleus, respectively. The NLS is a sequence of four Lys residues located at the N-terminus of the C-terminal a-helix; this is a unique characteristic of the Metazoan SWAP-70 PH domain. The SWAP-70 PH domain binds PtdIns(3,4,5)P3 and PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There are additional plant SWAP70 proteins, but these are not included in this hierarchy. Rice SWAP70 (OsSWAP70) exhibits GEF activity toward the its Rho GTPase, OsRac1, and regulates chitin-induced production of reactive oxygen species and defense gene expression in rice. Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP- and effector-triggered immunity. Plant SWAP70 contains both DH and PH domains, but their arrangement is the reverse of that in typical DH-PH-type Rho GEFs, wherein the DH domain is flanked by a C-terminal PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 7  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP 50
           W + WFVLRG  L YY+D   +ES    G + L   T + E+P
Sbjct: 18 NWQRRWFVLRGDQLYYYKDE--DESKPQ-GCIPLPGNT-VKELP 57

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.9
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.89
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.88
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.88
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.87
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.87
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.87
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.86
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.86
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.85
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.84
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.84
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.82
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.81
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.8
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.78
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.75
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.72
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.72
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.7
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.69
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.69
KOG0930|consensus	395		99.69
PF15409	89	PH_8: Pleckstrin homology domain	99.66
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.63
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	99.57
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.55
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.53
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.5
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.49
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.42
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.41
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.41
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.32
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.32
KOG3640|consensus	1116		99.31
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.24
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.23
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.17
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.17
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.16
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.14
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.14
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	99.1
KOG1090|consensus	1732		99.1
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.05
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.01
KOG2059|consensus	800		98.99
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	98.99
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	98.98
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	98.98
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	98.96
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	98.92
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	98.91
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	98.89
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.88
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	98.88
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	98.73
KOG0248|consensus	936		98.71
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	98.69
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	98.61
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	98.6
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	98.6
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	98.6
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	98.57
KOG0521|consensus	785		98.56
KOG0930|consensus	395		98.55
PTZ00267	478	NIMA-related protein kinase; Provisional	98.54
KOG1117|consensus	1186		98.52
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	98.49
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.41
PF15409	89	PH_8: Pleckstrin homology domain	98.4
KOG1739|consensus	611		98.37
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	98.37
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	98.37
KOG0690|consensus	516		98.35
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	98.31
PTZ00283	496	serine/threonine protein kinase; Provisional	98.3
KOG1117|consensus	1186		98.28
KOG3723|consensus	851		98.27
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	98.27
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	98.24
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	98.24
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	98.23
KOG0932|consensus	774		98.2
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	98.19
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	98.18
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	98.18
KOG4807|consensus	593		98.03
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	98.01
PLN02866	1068	phospholipase D	98.01
KOG3531|consensus	1036		97.99
KOG3751|consensus	622		97.96
PF15406	112	PH_6: Pleckstrin homology domain	97.95
KOG0248|consensus	936		97.89
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	97.81
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	97.78
KOG4807|consensus	593		97.73
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	97.67
PF15408	104	PH_7: Pleckstrin homology domain	97.64
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	97.63
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	97.58
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	97.54
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	97.5
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	97.35
KOG3640|consensus	1116		97.3
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	97.24
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	97.24
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	97.17
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	97.08
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	97.07
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	96.93
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	96.74
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	96.57
KOG1090|consensus	1732		96.47
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	96.38
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	96.2
KOG4424|consensus	623		96.09
KOG3549|consensus	505		96.06
PF15411	116	PH_10: Pleckstrin homology domain	96.04
KOG4236|consensus	888		96.03
KOG3543|consensus	1218		96.0
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	95.95
KOG1738|consensus	638		95.91
KOG1739|consensus	611		95.59
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	95.34
KOG3751|consensus	622		95.31
KOG3727|consensus	664		95.2
KOG0705|consensus	749		94.79
KOG1451|consensus	812		94.72
cd01255	160	PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM	94.71
KOG4424|consensus	623		94.65
KOG2070|consensus	661		94.55
PLN02866	1068	phospholipase D	93.89
KOG0592|consensus	604		93.81
PF04714	52	BCL_N: BCL7, N-terminal conserver region; InterPro	93.24
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	93.14
KOG1737|consensus	799		92.99
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	92.97
KOG0517|consensus	2473		92.06
KOG2059|consensus	800		90.34
KOG1737|consensus	799		90.2
KOG1170|consensus	1099		89.93
KOG3520|consensus	1167		89.08
KOG1738|consensus	638		88.91
KOG1264|consensus	1267		87.88
KOG3551|consensus	506		87.87
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	87.85
KOG3531|consensus	1036		87.4
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	87.29
PF15404	185	PH_4: Pleckstrin homology domain	86.21
PF15277	91	Sec3-PIP2_bind: Exocyst complex component SEC3 N-t	85.66
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	85.08
KOG4095|consensus	165		85.07
KOG0690|consensus	516		84.83
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	84.62
PF06017	199	Myosin_TH1: Myosin tail; InterPro: IPR010926 These	82.88
KOG4407|consensus	1973		82.17
KOG3523|consensus	695		82.05

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.90  E-value=3.5e-23  Score=136.53  Aligned_cols=87  Identities=23%  Similarity=0.395  Sum_probs=74.5

Q ss_pred             cceee---eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-----CCCceEEEEeCCCcEEEEE
Q psy8929          53 RNFGF---QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----ARNFGFQITTWDSKRTILS  124 (160)
Q Consensus        53 kk~g~---~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-----~~~~~F~i~t~~~r~~~l~  124 (160)
                      ++.|+   .+++|++|||+|+++.|+||++.....+  ..|.|+|+.|..|.....     .++++|+|.|++ |+|+|+
T Consensus         7 ~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~--~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~-rt~~l~   83 (101)
T cd01264           7 KEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP--DDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILK   83 (101)
T ss_pred             eecCccceeeecceeEEEEEeCCEEEEEeccCccCC--CCceEEcccceEEeeccccccccccCcEEEEEcCC-ceEEEE
Confidence            34445   8999999999999999999998866544  159999999998887654     236999999997 999999


Q ss_pred             cCCHHHHHHHHHHHHHHh
Q psy8929         125 AVTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~~~  142 (160)
                      |+|++|+++||++|+.|+
T Consensus        84 A~se~e~e~WI~~i~~a~  101 (101)
T cd01264          84 AKDEKNAEEWLQCLNIAV  101 (101)
T ss_pred             eCCHHHHHHHHHHHHhhC
Confidence            999999999999999864

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.89  E-value=8.5e-23  Score=136.21  Aligned_cols=87  Identities=23%  Similarity=0.491  Sum_probs=70.9

Q ss_pred             ceeee-eeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCcee---eee-cCC----CCCceEEEEeCCCcEEEEE
Q psy8929          54 NFGFQ-ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS---LSE-VPV----ARNFGFQITTWDSKRTILS  124 (160)
Q Consensus        54 k~g~~-~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~---v~~-~~~----~~~~~F~i~t~~~r~~~l~  124 (160)
                      |.|+. .++|++|||||+++.|+||+++.+..+   .|.|+|+.+..   |.. .+.    ...++|+|.|++ |+|+|+
T Consensus         7 K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~---~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~-Rty~l~   82 (103)
T cd01251           7 KTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFA---KGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPE-RKFLFA   82 (103)
T ss_pred             ecCCCCCCCceeEEEEEeCCEEEEECCCCCcCc---CcEEEeeccccceeEeccCCccccccccceEEEEeCC-eEEEEE
Confidence            44443 689999999999999999999988777   89999986542   322 111    233599999995 999999


Q ss_pred             cCCHHHHHHHHHHHHHHhcc
Q psy8929         125 AVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~~~~~  144 (160)
                      |+|++|+++||+||++++..
T Consensus        83 a~s~~e~~~Wi~ai~~v~~~  102 (103)
T cd01251          83 CETEQDRREWIAAFQNVLSR  102 (103)
T ss_pred             CCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999864

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.88  E-value=2.1e-22  Score=133.68  Aligned_cols=85  Identities=19%  Similarity=0.265  Sum_probs=73.2

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-----CCCceEEEEeCCCcEEEEEcCC
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----ARNFGFQITTWDSKRTILSAVT  127 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-----~~~~~F~i~t~~~r~~~l~a~s  127 (160)
                      .|+|+..++|++|||||+++.|+||+++.+..+   .|.|+|..+. +...++     +++++|.|.+++ |+|+|+|+|
T Consensus         9 ~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~~---~~~I~L~~~~-v~~~~~~~~~~~~~~~F~I~t~~-rt~~~~A~s   83 (100)
T cd01233           9 NFPEETNSGWTRRFVVVRRPYLHIYRSDKDPVE---RGVINLSTAR-VEHSEDQAAMVKGPNTFAVCTKH-RGYLFQALS   83 (100)
T ss_pred             EeeCCCCCCcEEEEEEEECCEEEEEccCCCccE---eeEEEecccE-EEEccchhhhcCCCcEEEEECCC-CEEEEEcCC
Confidence            455667799999999999999999999988776   8999999876 444433     368999999986 999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy8929         128 AGIRNNWMSAIKRTA  142 (160)
Q Consensus       128 ~~e~~~Wi~al~~~~  142 (160)
                      ++|+++||.||+..+
T Consensus        84 ~~e~~~Wi~ai~~~~   98 (100)
T cd01233          84 DKEMIDWLYALNPLY   98 (100)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999999998764

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.88  E-value=4.2e-22  Score=131.20  Aligned_cols=81  Identities=25%  Similarity=0.516  Sum_probs=71.6

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSA  137 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~a  137 (160)
                      ..+.|++|||||+++.|+||+++.+..+   .|.|+|++++.....+..++++|+|.+++.++|+|+|+|++|+++||.|
T Consensus        16 ~~k~WkkrwfvL~~~~L~yyk~~~~~~~---~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~a   92 (96)
T cd01260          16 MGQKWARRWFVLKGTTLYWYRSKQDEKA---EGLIFLSGFTIESAKEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNH   92 (96)
T ss_pred             cccCceeEEEEEECCEEEEECCCCCCcc---ceEEEccCCEEEEchhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHH
Confidence            5679999999999999999999998776   8999999997443334468899999998769999999999999999999


Q ss_pred             HHHH
Q psy8929         138 IKRT  141 (160)
Q Consensus       138 l~~~  141 (160)
                      |++|
T Consensus        93 i~~~   96 (96)
T cd01260          93 LITA   96 (96)
T ss_pred             HHhC
Confidence            9875

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.87  E-value=8.4e-22  Score=129.59  Aligned_cols=79  Identities=24%  Similarity=0.468  Sum_probs=68.1

Q ss_pred             eeeeceEEEEEEeC--CEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHH
Q psy8929          58 QITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWM  135 (160)
Q Consensus        58 ~~~~WkkrwfvL~~--~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi  135 (160)
                      ..++|++|||||++  +.|+||+++.+..+   .|.|+|.++..+.. +...++.|+|+|++ |+|+|+|+|++|+++||
T Consensus        13 ~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p---~G~I~L~~~~~~~~-~~~~~~~F~i~t~~-r~y~l~A~s~~e~~~Wi   87 (95)
T cd01265          13 PLRGRRSRWFALDDRTCYLYYYKDSQDAKP---LGRVDLSGAAFTYD-PREEKGRFEIHSNN-EVIALKASSDKQMNYWL   87 (95)
T ss_pred             CCcCceeEEEEEcCCCcEEEEECCCCcccc---cceEECCccEEEcC-CCCCCCEEEEEcCC-cEEEEECCCHHHHHHHH
Confidence            47899999999984  58999999998777   99999999874433 33357899999985 99999999999999999


Q ss_pred             HHHHHH
Q psy8929         136 SAIKRT  141 (160)
Q Consensus       136 ~al~~~  141 (160)
                      +||+.+
T Consensus        88 ~al~~~   93 (95)
T cd01265          88 QALQSK   93 (95)
T ss_pred             HHHHhh
Confidence            999875

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.87  E-value=1e-21  Score=131.68  Aligned_cols=81  Identities=22%  Similarity=0.409  Sum_probs=68.6

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--------CCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--------ARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--------~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      ..++|++|||||+++.|+||+++.+.. ..+.|.|+|..+..++.+.+        .+.++|+|++++ ++|||.|+|++
T Consensus        17 ~~~nwKkRwFvL~~~~L~Yyk~~~~~~-~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~-r~~yl~A~s~~   94 (106)
T cd01238          17 SPLNYKERLFVLTKSKLSYYEGDFEKR-GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE-GTLYVFAPTEE   94 (106)
T ss_pred             CCCCceeEEEEEcCCEEEEECCCcccc-cCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC-CeEEEEcCCHH
Confidence            446999999999999999999987641 11289999999988776543        247899999985 89999999999


Q ss_pred             HHHHHHHHHHH
Q psy8929         130 IRNNWMSAIKR  140 (160)
Q Consensus       130 e~~~Wi~al~~  140 (160)
                      |+++||+||++
T Consensus        95 er~~WI~ai~~  105 (106)
T cd01238          95 LRKRWIKALKQ  105 (106)
T ss_pred             HHHHHHHHHHh
Confidence            99999999986

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.87  E-value=2.6e-21  Score=126.17  Aligned_cols=85  Identities=21%  Similarity=0.337  Sum_probs=71.9

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      .|.|..+++|++|||||+++.|.||+++.+... .+.|.|+|..+..+. . +.+++.|.|.+.++++|+|.|+|++|++
T Consensus         6 ~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~-~~~G~I~L~~~~i~~-~-~~~~~~F~i~~~~~r~~~L~A~s~~e~~   82 (91)
T cd01247           6 SKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSH-GCRGSIFLKKAIIAA-H-EFDENRFDISVNENVVWYLRAENSQSRL   82 (91)
T ss_pred             EEeccccCCCceEEEEEECCEEEEEecCccCcC-CCcEEEECcccEEEc-C-CCCCCEEEEEeCCCeEEEEEeCCHHHHH
Confidence            577788999999999999999999999887542 238999999987443 2 3457899998766699999999999999


Q ss_pred             HHHHHHHH
Q psy8929         133 NWMSAIKR  140 (160)
Q Consensus       133 ~Wi~al~~  140 (160)
                      .||+||++
T Consensus        83 ~Wi~al~~   90 (91)
T cd01247          83 LWMDSVVR   90 (91)
T ss_pred             HHHHHHhh
Confidence            99999985

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.86  E-value=2.5e-21  Score=127.52  Aligned_cols=77  Identities=14%  Similarity=0.250  Sum_probs=68.7

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCCcEEEEEcCCHHHHHHHHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDSKRTILSAVTAGIRNNWMS  136 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~  136 (160)
                      .+||+|||+|++..|+||+++....    .|.|+|+.+..|+.+..   ..+++|+|++++ ++|||.|+|++|+++||.
T Consensus        19 ~n~KkRwF~Lt~~~L~Y~k~~~~~~----~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r~~yi~a~s~~E~~~Wi~   93 (98)
T cd01244          19 LHFKKRYFQLTTTHLSWAKDVQCKK----SALIKLAAIKGTEPLSDKSFVNVDIITIVCED-DTMQLQFEAPVEATDWLN   93 (98)
T ss_pred             cCCceeEEEECCCEEEEECCCCCce----eeeEEccceEEEEEcCCcccCCCceEEEEeCC-CeEEEECCCHHHHHHHHH
Confidence            7999999999999999999887433    79999999998887765   456899999996 899999999999999999


Q ss_pred             HHHHH
Q psy8929         137 AIKRT  141 (160)
Q Consensus       137 al~~~  141 (160)
                      ||+++
T Consensus        94 al~k~   98 (98)
T cd01244          94 ALEKQ   98 (98)
T ss_pred             HHhcC
Confidence            99863

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.86  E-value=5.5e-21  Score=127.05  Aligned_cols=80  Identities=23%  Similarity=0.419  Sum_probs=67.4

Q ss_pred             eeeeeceEEEEEEe-CCEEEEEeCCC-CccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          57 FQITTWTKHWFVLR-GCSLLYYRDPK-AEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        57 ~~~~~WkkrwfvL~-~~~L~yyk~~~-~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      ...++||+|||||+ ++.|+||++.. +..+   +|.|+|+.|..|.....  +++++|.|+|++ |+|||.|+|++|++
T Consensus        19 ~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p---~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~-R~f~l~Aete~E~~   94 (104)
T cd01236          19 HRSKRWQRRWFILYDHGLLTYALDEMPTTLP---QGTIDMNQCTDVVDAEARTGQKFSICILTPD-KEHFIKAETKEEIS   94 (104)
T ss_pred             eeeccccceEEEEeCCCEEEEeeCCCCCccc---ceEEEccceEEEeecccccCCccEEEEECCC-ceEEEEeCCHHHHH
Confidence            46799999999998 57888887664 4454   89999999998776543  456899999996 99999999999999


Q ss_pred             HHHHHHHH
Q psy8929         133 NWMSAIKR  140 (160)
Q Consensus       133 ~Wi~al~~  140 (160)
                      +||++|..
T Consensus        95 ~Wi~~l~~  102 (104)
T cd01236          95 WWLNMLMV  102 (104)
T ss_pred             HHHHHHHh
Confidence            99999975

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.85  E-value=6.4e-21  Score=126.45  Aligned_cols=86  Identities=23%  Similarity=0.383  Sum_probs=72.6

Q ss_pred             cceeeeeeeceEEEEEEeC--CEEEEEeCCCCccCCccceeEEcCCceeeeecCC--------CCCceEEEEeCCCcEEE
Q psy8929          53 RNFGFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--------ARNFGFQITTWDSKRTI  122 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~--~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--------~~~~~F~i~t~~~r~~~  122 (160)
                      .|+|...++|++|||||.+  +.|.||+++.+..+   .|.|+|..+..+.....        .+.+.|.|.+++ |+|+
T Consensus         6 ~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~---~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~-r~~~   81 (101)
T cd01235           6 YKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAE---KGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSK-RTYN   81 (101)
T ss_pred             EEcCCCCCCccceEEEEECCCCEEEEecCCCCCcc---ceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCC-ceEE
Confidence            4666788999999999994  59999999988777   89999999887664321        245779998875 9999


Q ss_pred             EEcCCHHHHHHHHHHHHHHh
Q psy8929         123 LSAVTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       123 l~a~s~~e~~~Wi~al~~~~  142 (160)
                      |+|+|++|+.+||.||+++|
T Consensus        82 ~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          82 FLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             EECCCHHHHHHHHHHHHhhC
Confidence            99999999999999999875

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.84  E-value=2.6e-20  Score=128.31  Aligned_cols=87  Identities=25%  Similarity=0.546  Sum_probs=74.8

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC-CCCCceEEEEeCCC-------------
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP-VARNFGFQITTWDS-------------  118 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~-~~~~~~F~i~t~~~-------------  118 (160)
                      .|+|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++. |...+ ..++++|+|.++++             
T Consensus         7 ~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~~---~g~I~L~~~~-v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~   82 (125)
T cd01252           7 LKQGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENVS-IREVEDPSKPFCFELFSPSDKQQIKACKTESDG   82 (125)
T ss_pred             EEeCCCCCCeEeEEEEEECCEEEEEcCCCCCCc---eEEEECCCcE-EEEcccCCCCeeEEEECCccccccccccccccc
Confidence            455667799999999999999999999988777   8999999887 55443 35789999987664             


Q ss_pred             -------cEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         119 -------KRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       119 -------r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                             ++|+|+|+|++|+.+||+||+.++.
T Consensus        83 ~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~  114 (125)
T cd01252          83 RVVEGNHSVYRISAANDEEMDEWIKSIKASIS  114 (125)
T ss_pred             cccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence                   6899999999999999999999886

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.84  E-value=3.8e-20  Score=122.56  Aligned_cols=81  Identities=20%  Similarity=0.291  Sum_probs=68.5

Q ss_pred             eeeceEEEEEEeCC------EEEEEeCCCCccC--CccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          59 ITTWTKHWFVLRGC------SLLYYRDPKAEES--GVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        59 ~~~WkkrwfvL~~~------~L~yyk~~~~~~~--~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      .++|++|||||+++      .|.||+++.....  ..+.|+|+|.+|..|...++ .++++|.|.|++ ++|+|.|+|++
T Consensus        11 ~K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~d-r~f~l~aese~   89 (101)
T cd01257          11 QKSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRD-EYFAVAAENEA   89 (101)
T ss_pred             ecCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEeCC-ceEEEEeCCHH
Confidence            38999999999987      7999999875210  12389999999998877655 346999999997 89999999999


Q ss_pred             HHHHHHHHHHH
Q psy8929         130 IRNNWMSAIKR  140 (160)
Q Consensus       130 e~~~Wi~al~~  140 (160)
                      |+++||.+|..
T Consensus        90 E~~~Wi~~i~~  100 (101)
T cd01257          90 EQDSWYQALLE  100 (101)
T ss_pred             HHHHHHHHHhh
Confidence            99999999964

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.82  E-value=6.8e-20  Score=120.42  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=71.5

Q ss_pred             ceeee-eeeceEEEEEEeC----CEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCC-cEEEEE
Q psy8929          54 NFGFQ-ITTWTKHWFVLRG----CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDS-KRTILS  124 (160)
Q Consensus        54 k~g~~-~~~WkkrwfvL~~----~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~-r~~~l~  124 (160)
                      |.|+. .+.||+|||+|.+    ++|+||++..+.++   +|.|+|..+. |.++.+   +++|||+|.++.. .+|+++
T Consensus         7 K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p---~gli~l~~~~-V~~v~ds~~~r~~cFel~~~~~~~~y~~~   82 (98)
T cd01245           7 KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKP---IGLIDLSDAY-LYPVHDSLFGRPNCFQIVERALPTVYYSC   82 (98)
T ss_pred             cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCc---cceeeccccE-EEEccccccCCCeEEEEecCCCCeEEEEe
Confidence            44445 8999999999986    99999999999887   8999999994 777655   6889999999864 599999


Q ss_pred             cCCHHHHHHHHHHHHH
Q psy8929         125 AVTAGIRNNWMSAIKR  140 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~  140 (160)
                      |++ +|+++||++|+.
T Consensus        83 a~~-~er~~Wi~~l~~   97 (98)
T cd01245          83 RSS-EERDKWIESLQA   97 (98)
T ss_pred             CCH-HHHHHHHHHHhc
Confidence            999 999999999986

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.81  E-value=2.5e-19  Score=120.50  Aligned_cols=79  Identities=23%  Similarity=0.392  Sum_probs=66.2

Q ss_pred             eeeceEEEEEEeCCE-------EEEEeCCCCccCCccceeEEcCCceeeeecC---C---CCCceEEEEeCCCcEEEEEc
Q psy8929          59 ITTWTKHWFVLRGCS-------LLYYRDPKAEESGVLDGVVALNNVTSLSEVP---V---ARNFGFQITTWDSKRTILSA  125 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~-------L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~---~---~~~~~F~i~t~~~r~~~l~a  125 (160)
                      .++|++|||||+++.       |+||+++.+..+   .|.|+|+.+..+....   .   ...+.|.|.+++ |+|+|.|
T Consensus        16 ~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~---~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~-r~y~l~A   91 (108)
T cd01266          16 RTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKL---EFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIV-RDLYLVA   91 (108)
T ss_pred             ccCcEEEEEEEeccccCCCcceEEEECCCCCCcc---ceEEECCccEEEcccccccccCcccceEEEEEeCC-ccEEEEE
Confidence            469999999999876       599999988777   8999999988654311   1   235679999985 9999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy8929         126 VTAGIRNNWMSAIKRT  141 (160)
Q Consensus       126 ~s~~e~~~Wi~al~~~  141 (160)
                      +|++|+++||.+|++.
T Consensus        92 ~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          92 KNEEEMTLWVNCICKL  107 (108)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999999874

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.80  E-value=8e-19  Score=113.85  Aligned_cols=83  Identities=27%  Similarity=0.484  Sum_probs=71.0

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCc--cCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAE--ESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~--~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      |++...+.|++|||+|+++.|+||+++.+.  .+   .|.|+|.++. +.. +...+++|+|.++++++|+|+|+|++|+
T Consensus         7 k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~---~~~i~l~~~~-~~~-~~~~~~~F~i~~~~~~~~~~~a~s~~e~   81 (91)
T cd01246           7 KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGKP---RGTILLSGAV-ISE-DDSDDKCFTIDTGGDKTLHLRANSEEER   81 (91)
T ss_pred             EecccCCCceeeEEEEECCEEEEEecCccCCCCc---eEEEEeceEE-EEE-CCCCCcEEEEEcCCCCEEEEECCCHHHH
Confidence            445566899999999999999999999876  44   8999999987 443 2345899999998779999999999999


Q ss_pred             HHHHHHHHHH
Q psy8929         132 NNWMSAIKRT  141 (160)
Q Consensus       132 ~~Wi~al~~~  141 (160)
                      .+||.||+.|
T Consensus        82 ~~Wi~al~~a   91 (91)
T cd01246          82 QRWVDALELA   91 (91)
T ss_pred             HHHHHHHHhC
Confidence            9999999874

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.78  E-value=2.2e-18  Score=112.36  Aligned_cols=78  Identities=27%  Similarity=0.462  Sum_probs=66.7

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCC--ccCCccceeEEcCCceeeeecCCC--CCceEEEEeCCCcEEEEEcCCHHHHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKA--EESGVLDGVVALNNVTSLSEVPVA--RNFGFQITTWDSKRTILSAVTAGIRNNW  134 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~--~~~~~~~g~I~L~~~~~v~~~~~~--~~~~F~i~t~~~r~~~l~a~s~~e~~~W  134 (160)
                      .+.|++|||+|+++.|.||+++.+  ..+   .+.|+|..+. +...+..  ++++|+|.+++ ++|+|+|+|++|+++|
T Consensus        13 ~~~W~kr~~~L~~~~l~~y~~~~~~~~~~---~~~i~l~~~~-v~~~~~~~~~~~~f~i~~~~-~~~~f~a~s~~~~~~W   87 (94)
T cd01250          13 NKEWKKRWFVLKNGQLTYHHRLKDYDNAH---VKEIDLRRCT-VRHNGKQPDRRFCFEVISPT-KTWHFQADSEEERDDW   87 (94)
T ss_pred             CCCceEEEEEEeCCeEEEEcCCccccccc---ceEEeccceE-EecCccccCCceEEEEEcCC-cEEEEECCCHHHHHHH
Confidence            688999999999999999999876  333   6899999886 4444442  78999999987 9999999999999999


Q ss_pred             HHHHHHH
Q psy8929         135 MSAIKRT  141 (160)
Q Consensus       135 i~al~~~  141 (160)
                      |.||+++
T Consensus        88 i~al~~~   94 (94)
T cd01250          88 ISAIQES   94 (94)
T ss_pred             HHHHhcC
Confidence            9999863

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.75  E-value=6.6e-18  Score=115.12  Aligned_cols=84  Identities=29%  Similarity=0.575  Sum_probs=65.8

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeee--cC---CCCCceEEEEeC--CC------------
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE--VP---VARNFGFQITTW--DS------------  118 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~--~~---~~~~~~F~i~t~--~~------------  118 (160)
                      .+++|++|||||+++.|+||+.+.+.....+.|.|+|.+|.....  .+   ..+++.|.|...  ..            
T Consensus        15 ~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~   94 (122)
T cd01263          15 GFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCR   94 (122)
T ss_pred             CCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccC
Confidence            568999999999999999999888743234499999999995333  11   168999999632  10            


Q ss_pred             ----c-EEEEEcCCHHHHHHHHHHHHHH
Q psy8929         119 ----K-RTILSAVTAGIRNNWMSAIKRT  141 (160)
Q Consensus       119 ----r-~~~l~a~s~~e~~~Wi~al~~~  141 (160)
                          + .++|+|||++|+++||.||+++
T Consensus        95 ~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          95 RGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             CceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence                1 2679999999999999999864

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.72  E-value=8e-17  Score=107.41  Aligned_cols=81  Identities=22%  Similarity=0.371  Sum_probs=65.4

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccce--eEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDG--VVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g--~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ..+.|++|||+|+++.|+||+++...... ..+  .|+|.++. +...++  .++++|.|.++++++|+|+|++++++..
T Consensus        19 ~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~-~~~~~~i~l~~~~-i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~   96 (104)
T cd01253          19 SNRSWDNVYGVLCGQSLSFYKDEKMAAEN-VHGEPPVDLTGAQ-CEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSS   96 (104)
T ss_pred             CCCCcceEEEEEeCCEEEEEecCcccccC-CCCCCcEeccCCE-EEecCCcccCceEEEEEecCCCEEEEECCCHHHHHH
Confidence            46899999999999999999988653211 133  78887766 444433  5789999998888999999999999999


Q ss_pred             HHHHHHH
Q psy8929         134 WMSAIKR  140 (160)
Q Consensus       134 Wi~al~~  140 (160)
                      ||.+|+.
T Consensus        97 Wi~aL~~  103 (104)
T cd01253          97 WVRALKS  103 (104)
T ss_pred             HHHHHhc
Confidence            9999975

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.72  E-value=6.5e-17  Score=107.61  Aligned_cols=85  Identities=24%  Similarity=0.413  Sum_probs=62.2

Q ss_pred             cceeeeeeeceEEEEEEe-CCEEEEEeCCCCccCCccceeEEcCCcee----eeecCCCCCceEEEEeCC-----CcEEE
Q psy8929          53 RNFGFQITTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNVTS----LSEVPVARNFGFQITTWD-----SKRTI  122 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~-~~~L~yyk~~~~~~~~~~~g~I~L~~~~~----v~~~~~~~~~~F~i~t~~-----~r~~~  122 (160)
                      .|.|...++|++|||+|+ ++.|.||+++.....   .|.|+|.+...    +...+..++++|.|...+     .|  +
T Consensus         8 ~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~---~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r--~   82 (102)
T cd01241           8 HKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGD---PFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTTVIER--T   82 (102)
T ss_pred             EeecCCCCCCeeEEEEEeCCCeEEEEecCCCccC---ccccccCCeEEeeeeeeeccCCCcceEEEEeccCCcccCE--E
Confidence            566778999999999999 788998887654333   36677777652    333334577899997211     24  4


Q ss_pred             EEcCCHHHHHHHHHHHHHHh
Q psy8929         123 LSAVTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       123 l~a~s~~e~~~Wi~al~~~~  142 (160)
                      |+|+|++|+++||.||+.++
T Consensus        83 f~a~s~ee~~eWi~ai~~v~  102 (102)
T cd01241          83 FHVESPEEREEWIHAIQTVA  102 (102)
T ss_pred             EEeCCHHHHHHHHHHHHhhC
Confidence            46999999999999998753

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.70  E-value=2.8e-16  Score=103.10  Aligned_cols=88  Identities=30%  Similarity=0.516  Sum_probs=72.1

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC------CCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV------ARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~------~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      +...+.|++|||+|.++.|+||+++.+.....+.+.|+|.++........      ..+++|.|.++++.+|+|+|+|++
T Consensus        11 ~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~   90 (104)
T PF00169_consen   11 SSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEE   90 (104)
T ss_dssp             ESSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHH
T ss_pred             CCCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHH
Confidence            35678999999999999999999998422222389999999974333322      478999999998669999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy8929         130 IRNNWMSAIKRTAA  143 (160)
Q Consensus       130 e~~~Wi~al~~~~~  143 (160)
                      ++..|+.+|+.++.
T Consensus        91 ~~~~W~~~i~~~~~  104 (104)
T PF00169_consen   91 ERKRWIQAIQKAIK  104 (104)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999863

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.69  E-value=4.1e-16  Score=105.76  Aligned_cols=88  Identities=17%  Similarity=0.302  Sum_probs=72.5

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCC----ccceeEEcCCce-eeeecCCCCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESG----VLDGVVALNNVT-SLSEVPVARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~----~~~g~I~L~~~~-~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      .+....|+++||||+++.|++|+|+.....+    .....|.|.++. .+......++++|.|.+++++.|.|+|.+++|
T Consensus        20 ~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee   99 (117)
T cd01230          20 PFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKE   99 (117)
T ss_pred             CCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHH
Confidence            3446799999999999999999999752111    124789999988 34444457999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8929         131 RNNWMSAIKRTAA  143 (160)
Q Consensus       131 ~~~Wi~al~~~~~  143 (160)
                      |+.||.+|+.++.
T Consensus       100 ~~~Wi~~I~~~~~  112 (117)
T cd01230         100 LQSWIERINVVAA  112 (117)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999875

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.69  E-value=2.6e-16  Score=103.87  Aligned_cols=87  Identities=17%  Similarity=0.350  Sum_probs=68.9

Q ss_pred             eeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeCC---CcEEEEEcCCHHH
Q psy8929          55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWD---SKRTILSAVTAGI  130 (160)
Q Consensus        55 ~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~---~r~~~l~a~s~~e  130 (160)
                      +.+..++||+|||+|++..|+||++..+..+ .+.+.|+|.+|.....+.. .++++|.+.+|.   .++|+|.|+|+++
T Consensus        13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~~-~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeq   91 (106)
T cd01237          13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSNG-APIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQ   91 (106)
T ss_pred             chhhhhhheeEEEEEeCCEEEEEccchhcCC-CCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHH
Confidence            3466788999999999999999999877543 3367777888874443322 467999998652   2799999999999


Q ss_pred             HHHHHHHHHHHh
Q psy8929         131 RNNWMSAIKRTA  142 (160)
Q Consensus       131 ~~~Wi~al~~~~  142 (160)
                      +.+||+|++.|.
T Consensus        92 ya~Wmaa~rlas  103 (106)
T cd01237          92 YAKWMAACRLAS  103 (106)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999875

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0930|consensus

Probab=99.69  E-value=1.3e-16  Score=120.68  Aligned_cols=87  Identities=24%  Similarity=0.500  Sum_probs=75.0

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeCC--------------
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWD--------------  117 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~--------------  117 (160)
                      |..|...++||+|||+|++++||||....+.+|   +|.|+|.+.. |..+++ .+|+||+|..+.              
T Consensus       268 Klgg~rvktWKrRWFiLtdNCLYYFe~tTDKEP---rGIIpLeNls-ir~VedP~kP~cfEly~ps~~gq~IKACKTe~D  343 (395)
T KOG0930|consen  268 KLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENLS-IREVEDPKKPNCFELYIPSNKGQVIKACKTEAD  343 (395)
T ss_pred             eecCCcccchhheeEEeecceeeeeeeccCCCC---Ccceeccccc-eeeccCCCCCCeEEEecCCCCcCeeeeecccCC
Confidence            334458899999999999999999999999998   8999999988 666654 789999997432              


Q ss_pred             -------CcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         118 -------SKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       118 -------~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                             +..|-++|.+.+|+++||.+|+.++.
T Consensus       344 GRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  344 GRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             ceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence                   23789999999999999999999887

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.66  E-value=1.5e-15  Score=97.66  Aligned_cols=82  Identities=22%  Similarity=0.388  Sum_probs=69.7

Q ss_pred             cceeeeeeeceEEEEEE--eCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          53 RNFGFQITTWTKHWFVL--RGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL--~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      ||.....++|++|||+|  ..+.|.||.++++...   .|.|+|..+. |+..  .+...|.|.+.+ ..|+|.|.|+++
T Consensus         5 Kkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~---rGsi~v~~a~-is~~--~~~~~I~idsg~-~i~hLKa~s~~~   77 (89)
T PF15409_consen    5 KKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKL---RGSIDVSLAV-ISAN--KKSRRIDIDSGD-EIWHLKAKSQED   77 (89)
T ss_pred             eeccccCCCceeEEEEEEcCCcEEEEEecCCCCee---EeEEEccceE-EEec--CCCCEEEEEcCC-eEEEEEcCCHHH
Confidence            55566789999999999  8899999999887654   8999999986 4443  256789999864 799999999999


Q ss_pred             HHHHHHHHHHH
Q psy8929         131 RNNWMSAIKRT  141 (160)
Q Consensus       131 ~~~Wi~al~~~  141 (160)
                      .+.|+.||+.+
T Consensus        78 f~~Wv~aL~~a   88 (89)
T PF15409_consen   78 FQRWVSALQKA   88 (89)
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.63  E-value=3.1e-15  Score=102.43  Aligned_cols=81  Identities=20%  Similarity=0.398  Sum_probs=69.1

Q ss_pred             eeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-------------CCCceEEEEeCCCcEEEE
Q psy8929          57 FQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------------ARNFGFQITTWDSKRTIL  123 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-------------~~~~~F~i~t~~~r~~~l  123 (160)
                      .....|++|||+|+++.|.||+++.+..+   .|.|.|+....|.....             .+.++|.|.+++ |+|.|
T Consensus        28 ~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~---~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~-R~~~l  103 (121)
T cd01254          28 RMCDRWQKRWFIVKESFLAYMDDPSSAQI---LDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSN-RSLKL  103 (121)
T ss_pred             ccccCCcceeEEEeCCEEEEEcCCCCCce---eeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCC-cEEEE
Confidence            34568999999999999999999998666   89999977776664221             467899999986 99999


Q ss_pred             EcCCHHHHHHHHHHHHHH
Q psy8929         124 SAVTAGIRNNWMSAIKRT  141 (160)
Q Consensus       124 ~a~s~~e~~~Wi~al~~~  141 (160)
                      .|+|+.++.+||++|+.|
T Consensus       104 ~a~s~~~~~~Wi~~i~~a  121 (121)
T cd01254         104 KCKSSRKLKQWMASIEDA  121 (121)
T ss_pred             EeCCHHHHHHHHHHHHhC
Confidence            999999999999999874

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=99.57  E-value=2.5e-14  Score=92.31  Aligned_cols=81  Identities=25%  Similarity=0.395  Sum_probs=69.0

Q ss_pred             eeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCC-------cEEEEEcC
Q psy8929          57 FQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDS-------KRTILSAV  126 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~-------r~~~l~a~  126 (160)
                      +..+.-|.|||||+..+|+||+++++.++   ++.|+|.+.. +..++.   +++++|+|..+++       +++-|+|+
T Consensus        14 ~m~ggsK~~WFVLt~~~L~wykd~eeKE~---kyilpLdnLk-~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~   89 (110)
T cd01256          14 IMKGGSKDYWFVLTSESLSWYKDDEEKEK---KYMLPLDGLK-LRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCE   89 (110)
T ss_pred             eecCCCcceEEEEecceeeeecccccccc---cceeeccccE-EEeecccccCCCcEEEEEcCcccccccchheeeecCC
Confidence            44456789999999999999999999988   8999999988 555544   6889999987654       57789999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy8929         127 TAGIRNNWMSAIKRT  141 (160)
Q Consensus       127 s~~e~~~Wi~al~~~  141 (160)
                      |.+|++.|...+-.|
T Consensus        90 ~~e~vdswkasflra  104 (110)
T cd01256          90 TLEEVDSWKASFLRA  104 (110)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999888665

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.55  E-value=7.4e-14  Score=92.73  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=69.1

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCcc--CCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEE--SGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~--~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      |.+...+.|+.|||.|-++.|.|++......  .=...+.|+|.++......+...+|+|.|.+++ ++|+|+|+|++|+
T Consensus        10 K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~~-rsf~l~A~s~eEk   88 (101)
T cd01219          10 KISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDNLERPHSFLVSGKQ-RCLELQARTQKEK   88 (101)
T ss_pred             EEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCCCCcCceEEEecCC-cEEEEEcCCHHHH
Confidence            4455567899999999988999998542110  012368899999884332233578999999986 9999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8929         132 NNWMSAIKRTAA  143 (160)
Q Consensus       132 ~~Wi~al~~~~~  143 (160)
                      ++||.||+.+|.
T Consensus        89 ~~W~~ai~~~i~  100 (101)
T cd01219          89 NDWVQAIFSIID  100 (101)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999874

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.53  E-value=1.4e-13  Score=93.94  Aligned_cols=89  Identities=24%  Similarity=0.411  Sum_probs=59.1

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCc-----------cCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCc
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAE-----------ESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSK  119 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~-----------~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r  119 (160)
                      ++.......|+..|+||+++.|++|+++...           +...+.+.|+|..+.. ....+  .++|+|.|.++++.
T Consensus        17 kk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a-~~a~dY~Kr~~VFrL~~~dg~   95 (119)
T PF15410_consen   17 KKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALA-EIASDYTKRKNVFRLRTADGS   95 (119)
T ss_dssp             CC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EE-EEETTBTTCSSEEEEE-TTS-
T ss_pred             CCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEE-EeCcccccCCeEEEEEeCCCC
Confidence            4444467899999999999999999994321           0112356799999884 43443  68999999999999


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHh
Q psy8929         120 RTILSAVTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       120 ~~~l~a~s~~e~~~Wi~al~~~~  142 (160)
                      .|.|+|.|++||.+||++|+.+.
T Consensus        96 e~Lfqa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen   96 EYLFQASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred             EEEEECCCHHHHHHHHHHHhhhc
Confidence            99999999999999999998764

>smart00233 PH Pleckstrin homology domain

Probab=99.50  E-value=6.8e-13  Score=85.71  Aligned_cols=84  Identities=30%  Similarity=0.587  Sum_probs=70.0

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ....|++|||+|.++.|.||+++.......+.+.|+|.++. +.....    ..+++|.|.++++.+++|.|+|++|+..
T Consensus        14 ~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~-v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~   92 (102)
T smart00233       14 KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGIT-VREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREE   92 (102)
T ss_pred             ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCE-EEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHH
Confidence            45689999999999999999998764323347999999995 555443    3689999999875599999999999999


Q ss_pred             HHHHHHHHh
Q psy8929         134 WMSAIKRTA  142 (160)
Q Consensus       134 Wi~al~~~~  142 (160)
                      |+.+|+.++
T Consensus        93 W~~~i~~~~  101 (102)
T smart00233       93 WVDALRKAI  101 (102)
T ss_pred             HHHHHHHhh
Confidence            999999875

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.49  E-value=2.1e-13  Score=92.18  Aligned_cols=82  Identities=24%  Similarity=0.423  Sum_probs=48.3

Q ss_pred             eeeceEEEEEEe-CCEEEEEeCCCCccC----------CccceeEEcCC----ceeee---ecCCCCCceEEEEeCCCcE
Q psy8929          59 ITTWTKHWFVLR-GCSLLYYRDPKAEES----------GVLDGVVALNN----VTSLS---EVPVARNFGFQITTWDSKR  120 (160)
Q Consensus        59 ~~~WkkrwfvL~-~~~L~yyk~~~~~~~----------~~~~g~I~L~~----~~~v~---~~~~~~~~~F~i~t~~~r~  120 (160)
                      .+.|++|||+|. ++.|.||+.+.+...          ....+.+....    ...+.   .........|.|.|+. ++
T Consensus        13 ~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~-kt   91 (112)
T PF15413_consen   13 GKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKVFSIFTPT-KT   91 (112)
T ss_dssp             -S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEEEEEE-SS--E
T ss_pred             CcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCCcEEECCC-cE
Confidence            789999999999 999999999333110          00022222211    11111   0111345788999986 89


Q ss_pred             EEEEcCCHHHHHHHHHHHHHH
Q psy8929         121 TILSAVTAGIRNNWMSAIKRT  141 (160)
Q Consensus       121 ~~l~a~s~~e~~~Wi~al~~~  141 (160)
                      |+|.|+|.+|+.+||+||+.|
T Consensus        92 ~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   92 FHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHHH-
T ss_pred             EEEEECCHHHHHHHHHHHHhC
Confidence            999999999999999999875

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.42  E-value=4e-12  Score=81.27  Aligned_cols=82  Identities=29%  Similarity=0.548  Sum_probs=66.9

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCC--CCceEEEEeCCCcEEEEEcCCHHHHHHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--RNFGFQITTWDSKRTILSAVTAGIRNNWMS  136 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~--~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~  136 (160)
                      ...|++|||+|.++.|.+|+.........+.+.|+|.++. +...+..  .+++|.|.+.+++.++|+|+|++|+..|+.
T Consensus        13 ~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~-v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~   91 (96)
T cd00821          13 RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAE-VEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIE   91 (96)
T ss_pred             hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCE-EEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHH
Confidence            3789999999999999999988763111237999999966 5554442  579999998766899999999999999999


Q ss_pred             HHHHH
Q psy8929         137 AIKRT  141 (160)
Q Consensus       137 al~~~  141 (160)
                      +|+.+
T Consensus        92 ~l~~~   96 (96)
T cd00821          92 ALQSA   96 (96)
T ss_pred             HHhcC
Confidence            99863

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.41  E-value=4.4e-12  Score=81.66  Aligned_cols=79  Identities=24%  Similarity=0.490  Sum_probs=68.2

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccCCccc-eeEEcCCceeeeecCC--CCCceEEEEeCC--CcEEEEEcCCHHHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLD-GVVALNNVTSLSEVPV--ARNFGFQITTWD--SKRTILSAVTAGIRNN  133 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~-g~I~L~~~~~v~~~~~--~~~~~F~i~t~~--~r~~~l~a~s~~e~~~  133 (160)
                      ...|++|||+|.+..|.+|+++.....   . +.++|.... +...+.  ..+++|+|.+.+  .+.++|+|+|++|+..
T Consensus        16 ~~~w~~~~~~l~~~~l~~~~~~~~~~~---~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~   91 (99)
T cd00900          16 GKRWKRRWFFLFDDGLLLYKSDDKKEI---KPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQE   91 (99)
T ss_pred             ccCceeeEEEEECCEEEEEEcCCCCcC---CCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHH
Confidence            478999999999999999999987665   3 689999988 666544  467999999985  6899999999999999


Q ss_pred             HHHHHHHH
Q psy8929         134 WMSAIKRT  141 (160)
Q Consensus       134 Wi~al~~~  141 (160)
                      |+.+|+.+
T Consensus        92 W~~al~~~   99 (99)
T cd00900          92 WVEALQQA   99 (99)
T ss_pred             HHHHHhcC
Confidence            99999864

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.41  E-value=4e-12  Score=83.95  Aligned_cols=82  Identities=16%  Similarity=0.223  Sum_probs=63.7

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWMSA  137 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~a  137 (160)
                      ..|.|+||.+++..||+.+...+...=...|.|+|.++. |...++  ..+|+|+|.++. +.|.|+|+|++|+++||.+
T Consensus        15 ~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~~~~~~~F~I~~~~-ks~~l~A~s~~Ek~~Wi~~   92 (99)
T cd01220          15 GLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHEWGVPHCFTIFGGQ-CAITVAASTRAEKEKWLAD   92 (99)
T ss_pred             CCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-EeeccCCcCCceeEEEEcCC-eEEEEECCCHHHHHHHHHH
Confidence            467777777788777766654432111237999999998 665544  468999999985 8999999999999999999


Q ss_pred             HHHHhc
Q psy8929         138 IKRTAA  143 (160)
Q Consensus       138 l~~~~~  143 (160)
                      |+++|.
T Consensus        93 i~~aI~   98 (99)
T cd01220          93 LSKAIA   98 (99)
T ss_pred             HHHHhh
Confidence            999985

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.32  E-value=1.5e-12  Score=86.65  Aligned_cols=71  Identities=18%  Similarity=0.339  Sum_probs=46.8

Q ss_pred             CCCceEEEEEEeCC-eEEEeeCCC-cccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           5 KHTWTKHWFVLRGC-SLLYYRDPK-AEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~-~L~yy~~~~-~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      .|+||||||||+++ .|+||+++. +..+   .|+|+|+.|..|......+..       ..-+.+.++...+|..-++.
T Consensus        21 ~K~WkrRWFvL~~~~~L~y~~d~~~~~~p---~G~IdL~~~~~V~~~~~~~~~-------~~~f~I~tp~R~f~l~Aete   90 (104)
T cd01236          21 SKRWQRRWFILYDHGLLTYALDEMPTTLP---QGTIDMNQCTDVVDAEARTGQ-------KFSICILTPDKEHFIKAETK   90 (104)
T ss_pred             eccccceEEEEeCCCEEEEeeCCCCCccc---ceEEEccceEEEeecccccCC-------ccEEEEECCCceEEEEeCCH
Confidence            78999999999964 555554442 3333   699999999988866543321       11234566777777776665


Q ss_pred             ccC
Q psy8929          83 EES   85 (160)
Q Consensus        83 ~~~   85 (160)
                      ++.
T Consensus        91 ~E~   93 (104)
T cd01236          91 EEI   93 (104)
T ss_pred             HHH
Confidence            544

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.32  E-value=2.1e-12  Score=86.44  Aligned_cols=75  Identities=19%  Similarity=0.311  Sum_probs=46.4

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      +|||+|||||+++.|+||+++.+.... +.|.|+|..+..+.........+... ..+-.+-+.+++..+|..-++.
T Consensus        19 ~nwKkRwFvL~~~~L~Yyk~~~~~~~~-~kG~I~L~~~~~ve~~~~~~~~~~~~-~~~~~F~i~t~~r~~yl~A~s~   93 (106)
T cd01238          19 LNYKERLFVLTKSKLSYYEGDFEKRGS-KKGSIDLSKIKCVETVKPEKNPPIPE-RFKYPFQVVHDEGTLYVFAPTE   93 (106)
T ss_pred             CCceeEEEEEcCCEEEEECCCcccccC-cceeEECCcceEEEEecCCcCccccc-ccCccEEEEeCCCeEEEEcCCH
Confidence            499999999999999999988764222 36999999987655444333221111 1122233455554555544433

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>KOG3640|consensus

Probab=99.31  E-value=4.5e-12  Score=108.55  Aligned_cols=124  Identities=29%  Similarity=0.457  Sum_probs=91.2

Q ss_pred             CeEEEeeCCCcccCCcccceeecccceeecccccccceee--------eeeeceEEEEEEeCCEEEEEeCCCCccCCccc
Q psy8929          18 CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGF--------QITTWTKHWFVLRGCSLLYYRDPKAEESGVLD   89 (160)
Q Consensus        18 ~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~--------~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~   89 (160)
                      .+..||.++   --.+|+|+|.|..-..+...-+..-+||        +++.|+||||+|.++.+.|++.+.++....+.
T Consensus       959 ~t~~l~~v~---~vyPLEG~v~lkv~C~~~~~idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pi 1035 (1116)
T KOG3640|consen  959 DTRLLYLVD---VVYPLEGTVKLKVHCSLPDAIDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPI 1035 (1116)
T ss_pred             cceEEeecc---ccccccceEEEeeecccccccceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccCcc
Confidence            334555544   2457799998886443333222222233        46789999999999999999999997766779


Q ss_pred             eeEEcCCcee--eeecCC---CCCceEEEEeC------------CCc-EEEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929          90 GVVALNNVTS--LSEVPV---ARNFGFQITTW------------DSK-RTILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus        90 g~I~L~~~~~--v~~~~~---~~~~~F~i~t~------------~~r-~~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                      |.|+|+.|+.  |++...   +++|.|.|.+.            ..| ...|.|+|.+|++.|+++|++++..
T Consensus      1036 g~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1036 GQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred             eeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence            9999999996  444432   68999999821            123 6789999999999999999998763

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.24  E-value=1e-11  Score=82.71  Aligned_cols=37  Identities=30%  Similarity=0.622  Sum_probs=32.5

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      .++||||||||+++.|+||+++.+..+   .|.|+|..+.
T Consensus        13 ~k~wkkRwFvL~~~~L~Yyk~~~d~~~---~G~I~L~~~~   49 (103)
T cd01251          13 TEGFKKRWFTLDDRRLMYFKDPLDAFA---KGEVFLGSQE   49 (103)
T ss_pred             CCCceeEEEEEeCCEEEEECCCCCcCc---CcEEEeeccc
Confidence            478999999999999999999887655   7999998765

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.23  E-value=1.2e-11  Score=81.70  Aligned_cols=82  Identities=15%  Similarity=0.294  Sum_probs=54.4

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCCcc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEE   84 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~   84 (160)
                      -|+|+||||||+++.|.||++.....+  +.|+|+|+.|..+......++.    .+-...|-+.++..-+|...+++.+
T Consensus        16 ~K~WkrRwF~L~~~~L~y~K~~~~~~~--~~g~IdL~~~~sVk~~~~~~~~----~~~~~~Fei~tp~rt~~l~A~se~e   89 (101)
T cd01264          16 IKRWKTRYFTLSGAQLLFQKGKSKDDP--DDCSIDLSKIRSVKAVAKKRRD----RSLPKAFEIFTADKTYILKAKDEKN   89 (101)
T ss_pred             eecceeEEEEEeCCEEEEEeccCccCC--CCceEEcccceEEeeccccccc----cccCcEEEEEcCCceEEEEeCCHHH
Confidence            478999999999999999998865433  3599999999887655433221    1112245567777777766665554


Q ss_pred             CCccceeE
Q psy8929          85 SGVLDGVV   92 (160)
Q Consensus        85 ~~~~~g~I   92 (160)
                      ...|...|
T Consensus        90 ~e~WI~~i   97 (101)
T cd01264          90 AEEWLQCL   97 (101)
T ss_pred             HHHHHHHH
Confidence            43444433

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.17  E-value=3.6e-11  Score=79.62  Aligned_cols=74  Identities=19%  Similarity=0.221  Sum_probs=48.7

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCCc
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAE   83 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~   83 (160)
                      ..++|+||||||+++.|.||+++.+..+   .|.|+|+.+.........+..+.     ...|.+.++...+|+..+++.
T Consensus        14 ~~k~WkkRwfvL~~~~L~yyk~~~~~~~---~~~I~L~~~~v~~~~~~~~~~~~-----~~~F~I~t~~rt~~~~A~s~~   85 (100)
T cd01233          14 TNSGWTRRFVVVRRPYLHIYRSDKDPVE---RGVINLSTARVEHSEDQAAMVKG-----PNTFAVCTKHRGYLFQALSDK   85 (100)
T ss_pred             CCCCcEEEEEEEECCEEEEEccCCCccE---eeEEEecccEEEEccchhhhcCC-----CcEEEEECCCCEEEEEcCCHH
Confidence            4688999999999999999999887655   79999997643322222221110     124455666666666655554


Q ss_pred             cC
Q psy8929          84 ES   85 (160)
Q Consensus        84 ~~   85 (160)
                      +.
T Consensus        86 e~   87 (100)
T cd01233          86 EM   87 (100)
T ss_pred             HH
Confidence            43

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.17  E-value=5.8e-11  Score=77.32  Aligned_cols=44  Identities=25%  Similarity=0.522  Sum_probs=35.7

Q ss_pred             CCCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceee
Q psy8929           2 LNKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL   46 (160)
Q Consensus         2 ~~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~   46 (160)
                      .+.-++||+|||||+++.|.||+++.+...++ .|.|+|+.+..+
T Consensus         9 ~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~-~G~I~L~~~~i~   52 (91)
T cd01247           9 TNYINGWQDRYFVLKEGNLSYYKSEAEKSHGC-RGSIFLKKAIIA   52 (91)
T ss_pred             ccccCCCceEEEEEECCEEEEEecCccCcCCC-cEEEECcccEEE
Confidence            34568999999999999999999987654433 599999997543

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.16  E-value=1.4e-10  Score=76.16  Aligned_cols=68  Identities=16%  Similarity=0.343  Sum_probs=47.7

Q ss_pred             CCCceEEEEEEeC--CeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           5 KHTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         5 ~~~Wkkrwfvl~~--~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      .|+||||||||++  +.|+||+++.+..+   .|.|+|..+........ ++         ..|-+.+++..+++..+++
T Consensus        14 ~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p---~G~I~L~~~~~~~~~~~-~~---------~~F~i~t~~r~y~l~A~s~   80 (95)
T cd01265          14 LRGRRSRWFALDDRTCYLYYYKDSQDAKP---LGRVDLSGAAFTYDPRE-EK---------GRFEIHSNNEVIALKASSD   80 (95)
T ss_pred             CcCceeEEEEEcCCCcEEEEECCCCcccc---cceEECCccEEEcCCCC-CC---------CEEEEEcCCcEEEEECCCH
Confidence            5799999999984  58999999987666   79999998654432221 11         1344566777777776665


Q ss_pred             ccC
Q psy8929          83 EES   85 (160)
Q Consensus        83 ~~~   85 (160)
                      .+.
T Consensus        81 ~e~   83 (95)
T cd01265          81 KQM   83 (95)
T ss_pred             HHH
Confidence            443

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.14  E-value=1.9e-10  Score=75.37  Aligned_cols=37  Identities=35%  Similarity=0.935  Sum_probs=33.0

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      +.|+||||||+++.|+||+++.+..+   .|.|+|+.+..
T Consensus        18 k~WkkrwfvL~~~~L~yyk~~~~~~~---~~~I~L~~~~v   54 (96)
T cd01260          18 QKWARRWFVLKGTTLYWYRSKQDEKA---EGLIFLSGFTI   54 (96)
T ss_pred             cCceeEEEEEECCEEEEECCCCCCcc---ceEEEccCCEE
Confidence            48999999999999999999987776   89999998744

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.14  E-value=1.8e-10  Score=76.22  Aligned_cols=50  Identities=26%  Similarity=0.379  Sum_probs=38.5

Q ss_pred             CCCCCceEEEEEEeCC------eEEEeeCCCccc--CCcccceeecccceeecccccc
Q psy8929           3 NKKHTWTKHWFVLRGC------SLLYYRDPKAEE--SGVLDGVVALNNVTSLSEVPVA   52 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~------~L~yy~~~~~~~--~~~l~g~i~l~~~~~~~~~~~~   52 (160)
                      .|.++||||||||++.      .|.||++...-.  ...+.|+|+|+.|..|...++.
T Consensus         9 ~K~K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~   66 (101)
T cd01257           9 RKQKSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADA   66 (101)
T ss_pred             eEecCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecccc
Confidence            4569999999999987      799999986411  1233799999999988755443

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=99.10  E-value=2.1e-09  Score=71.21  Aligned_cols=84  Identities=19%  Similarity=0.377  Sum_probs=66.0

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---------CCCceEEEEeCC-CcEEEEEcCCHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---------ARNFGFQITTWD-SKRTILSAVTAG  129 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---------~~~~~F~i~t~~-~r~~~l~a~s~~  129 (160)
                      ++|.++|+||.+..|++|..+.+.....+...|+|.....|..+..         .-|+-|+|.+.+ .++.+|-|++++
T Consensus        18 ~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllLA~s~~   97 (112)
T cd01242          18 PGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLLAPQTD   97 (112)
T ss_pred             CCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEEeCCch
Confidence            4699999999999999999888754444577888876443343322         357889998754 489999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy8929         130 IRNNWMSAIKRTAA  143 (160)
Q Consensus       130 e~~~Wi~al~~~~~  143 (160)
                      |.+.|+.+|.+.|.
T Consensus        98 ek~kWV~~L~~~~~  111 (112)
T cd01242          98 EQNKWVSRLVKKIP  111 (112)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998763

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1090|consensus

Probab=99.10  E-value=3.2e-11  Score=104.11  Aligned_cols=87  Identities=22%  Similarity=0.421  Sum_probs=76.4

Q ss_pred             cceeeeeeeceEEEEEEeC--CEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCCcEEEEEcCC
Q psy8929          53 RNFGFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDSKRTILSAVT  127 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~--~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~r~~~l~a~s  127 (160)
                      -|+|..++.|+.|||||.+  .+|+||.+-.+..+   .|.|+|..+.++.....   .++--|.+.|.+ |+|.|+|.+
T Consensus      1641 yKrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~p---kG~IdLaevesv~~~~~k~vdekgffdlktt~-rvynf~a~n 1716 (1732)
T KOG1090|consen 1641 YKRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKP---KGCIDLAEVESVALIGPKTVDEKGFFDLKTTN-RVYNFCAQN 1716 (1732)
T ss_pred             hhcchhhcccccceeEecCCccceeeecccccccc---cchhhhhhhhhhcccCccccCccceeeeehhh-HHHHHHhcc
Confidence            4567889999999999986  79999999999888   89999999988776432   567789999975 999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy8929         128 AGIRNNWMSAIKRTAA  143 (160)
Q Consensus       128 ~~e~~~Wi~al~~~~~  143 (160)
                      ..++++|++.|+.+++
T Consensus      1717 in~AqqWve~iqscl~ 1732 (1732)
T KOG1090|consen 1717 INLAQQWVECIQSCLS 1732 (1732)
T ss_pred             chHHHHHHHHHHHhhC
Confidence            9999999999999863

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.05  E-value=4e-10  Score=76.92  Aligned_cols=44  Identities=25%  Similarity=0.548  Sum_probs=36.8

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      ..++|+||||||+++.|.||+.+.++....+.|.|+|..|....
T Consensus        15 ~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~   58 (122)
T cd01263          15 GFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSE   58 (122)
T ss_pred             CCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccc
Confidence            46899999999999999999988875544456999999977644

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.01  E-value=2.3e-09  Score=70.73  Aligned_cols=43  Identities=30%  Similarity=0.578  Sum_probs=35.3

Q ss_pred             CCCCCceEEEEEEe--CCeEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           3 NKKHTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~--~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      ...++||+|||||+  ++.|.||+++.+..+   .|.|+|+.+..+..
T Consensus        10 ~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~---~g~I~L~~~~~v~~   54 (101)
T cd01235          10 ALLKGWKPRWFVLDPDKHQLRYYDDFEDTAE---KGCIDLAEVKSVNL   54 (101)
T ss_pred             CCCCCccceEEEEECCCCEEEEecCCCCCcc---ceEEEcceeEEEee
Confidence            45689999999999  459999999876665   79999998766553

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>KOG2059|consensus

Probab=98.99  E-value=5.3e-10  Score=93.80  Aligned_cols=82  Identities=18%  Similarity=0.332  Sum_probs=73.3

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCCcEEEEEcCCHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDSKRTILSAVTAGIRNNW  134 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~r~~~l~a~s~~e~~~W  134 (160)
                      +..++|+|||.|+...|.|.|+++...    .+.|+|.++..|+.++.   +.+|+|+|++.+ |+.||+|.+-.|.++|
T Consensus       582 ~~~~FKKryf~LT~~~Ls~~Ksp~~q~----~~~Ipl~nI~avEklee~sF~~knv~qVV~~d-rtly~Q~~n~vEandW  656 (800)
T KOG2059|consen  582 GKKNFKKRYFRLTTEELSYAKSPGKQP----IYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTD-RTLYVQAKNCVEANDW  656 (800)
T ss_pred             hhhhhhheEEEeccceeEEecCCccCc----ccceeHHHHHHHHHhhhhccCCCceEEEEecC-cceeEecCCchHHHHH
Confidence            347899999999999999999998865    59999999998887655   678999999987 8999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8929         135 MSAIKRTAAM  144 (160)
Q Consensus       135 i~al~~~~~~  144 (160)
                      +++|++....
T Consensus       657 ldaL~kvs~~  666 (800)
T KOG2059|consen  657 LDALRKVSCC  666 (800)
T ss_pred             HHHHHHHhcc
Confidence            9999997653

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=98.99  E-value=8.1e-09  Score=68.54  Aligned_cols=73  Identities=21%  Similarity=0.232  Sum_probs=55.5

Q ss_pred             ceEEEEEEeCC-EEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy8929          62 WTKHWFVLRGC-SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR  140 (160)
Q Consensus        62 WkkrwfvL~~~-~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~  140 (160)
                      .++|+|+|+++ .|+|+......-    .|.|+++....++..   ....|.|.||+ |+|+|.. .+..+..|+++|+.
T Consensus        27 ~kkR~liLTd~PrL~Yvdp~~~~~----KGeI~~~~~l~v~~k---~~~~F~I~tp~-RtY~l~d-~~~~A~~W~~~I~~   97 (104)
T PF14593_consen   27 AKKRQLILTDGPRLFYVDPKKMVL----KGEIPWSKELSVEVK---SFKTFFIHTPK-RTYYLED-PEGNAQQWVEAIEE   97 (104)
T ss_dssp             EEEEEEEEETTTEEEEEETTTTEE----EEEE--STT-EEEEC---SSSEEEEEETT-EEEEEE--TTS-HHHHHHHHHH
T ss_pred             EEEEEEEEccCCEEEEEECCCCeE----CcEEecCCceEEEEc---cCCEEEEECCC-cEEEEEC-CCCCHHHHHHHHHH
Confidence            89999999997 888877666543    699999988777764   33599999995 9999966 66678999999998


Q ss_pred             Hhc
Q psy8929         141 TAA  143 (160)
Q Consensus       141 ~~~  143 (160)
                      +..
T Consensus        98 ~~~  100 (104)
T PF14593_consen   98 VKK  100 (104)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=98.98  E-value=2.3e-09  Score=70.63  Aligned_cols=43  Identities=14%  Similarity=0.257  Sum_probs=35.6

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeeccccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV   51 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~   51 (160)
                      +++||||||||++..|+||+++..    .+.|.|||+.+..+...+.
T Consensus        18 ~~n~KkRwF~Lt~~~L~Y~k~~~~----~~~g~I~L~~i~~ve~v~~   60 (98)
T cd01244          18 VLHFKKRYFQLTTTHLSWAKDVQC----KKSALIKLAAIKGTEPLSD   60 (98)
T ss_pred             CcCCceeEEEECCCEEEEECCCCC----ceeeeEEccceEEEEEcCC
Confidence            679999999999999999998752    3369999999887765544

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=98.98  E-value=4.5e-09  Score=70.06  Aligned_cols=78  Identities=17%  Similarity=0.263  Sum_probs=64.9

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC------CCCceEEEEeCCCcEEEEEcC-------
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV------ARNFGFQITTWDSKRTILSAV-------  126 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~------~~~~~F~i~t~~~r~~~l~a~-------  126 (160)
                      +.|||+|++|....|.+|.++..+..   -..|+|..+..|+....      ..++||+|.|.+ .+||...+       
T Consensus        14 ~~rKRhYWrLDsK~Itlf~~e~~sky---yKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~-~vY~VG~~~~~~~~~   89 (117)
T cd01239          14 NRRKKHYWRLDSKAITLYQEESGSRY---YKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTT-NVYFVGGEDYHAFSG   89 (117)
T ss_pred             cceeeeEEEecCCeEEEEEcCCCCee---eEEeehHHheEEeccCCCcCCCCCCCcEEEEEecC-EEEEecccccccCCC
Confidence            67899999999999999999998887   89999999998875422      478999999975 88888553       


Q ss_pred             -------------CHHHHHHHHHHHHHH
Q psy8929         127 -------------TAGIRNNWMSAIKRT  141 (160)
Q Consensus       127 -------------s~~e~~~Wi~al~~~  141 (160)
                                   ..+....|-.||++|
T Consensus        90 ~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          90 GPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             cccCCCCcccccchhHHHHHHHHHHhcC
Confidence                         345678899999874

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=98.96  E-value=1.4e-08  Score=67.58  Aligned_cols=82  Identities=18%  Similarity=0.188  Sum_probs=61.5

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWMSA  137 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~a  137 (160)
                      +.-+.|+|.|=.+.|.|-+-......=...+.|+|.++. |....+  .-+++|.|.++. +.|.++|+|++|..+||++
T Consensus        16 k~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~~~~~n~f~I~~~~-kSf~v~A~s~~eK~eWl~~   93 (104)
T cd01218          16 KKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQ-VESIEDDGIERNGWIIKTPT-KSFAVYAATETEKREWMLH   93 (104)
T ss_pred             CCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceE-EEecCCcccccceEEEecCC-eEEEEEcCCHHHHHHHHHH
Confidence            445668999988888885431110000125889999988 444443  357999999986 8999999999999999999


Q ss_pred             HHHHhc
Q psy8929         138 IKRTAA  143 (160)
Q Consensus       138 l~~~~~  143 (160)
                      |+.|+.
T Consensus        94 i~~ai~   99 (104)
T cd01218          94 INKCVT   99 (104)
T ss_pred             HHHHHH
Confidence            999986

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=98.92  E-value=6.1e-09  Score=69.83  Aligned_cols=40  Identities=23%  Similarity=0.555  Sum_probs=33.6

Q ss_pred             CCCceEEEEEEeCCe-------EEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCS-------LLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~-------L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++||||||||+++.       |.||+++.+.++   .|.|+|+.+..+.
T Consensus        16 ~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~---~g~I~L~~~~~v~   62 (108)
T cd01266          16 RTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKL---EFVIDLESCSQVD   62 (108)
T ss_pred             ccCcEEEEEEEeccccCCCcceEEEECCCCCCcc---ceEEECCccEEEc
Confidence            359999999999876       599999877766   8999999976543

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=98.91  E-value=4.9e-09  Score=72.03  Aligned_cols=38  Identities=32%  Similarity=0.826  Sum_probs=33.4

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      ..++||+|||||+++.|+||+++.+..+   .|.|+|+++.
T Consensus        12 ~~~~WkkRwfvL~~~~L~yyk~~~~~~~---~g~I~L~~~~   49 (125)
T cd01252          12 RVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENVS   49 (125)
T ss_pred             CCCCeEeEEEEEECCEEEEEcCCCCCCc---eEEEECCCcE
Confidence            3588999999999999999999877666   8999999765

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=98.89  E-value=9.8e-09  Score=68.17  Aligned_cols=83  Identities=20%  Similarity=0.355  Sum_probs=60.1

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-------CCCceEEEEeCCC------cEEEEE
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARNFGFQITTWDS------KRTILS  124 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-------~~~~~F~i~t~~~------r~~~l~  124 (160)
                      +.+.||++||+|+..-|+|+...+..++..+....++++.. |.....       ..+++|.|..+..      -..+||
T Consensus        12 gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~n-vY~~~~~kKk~kAPTd~~F~~K~~~~q~~~s~~ik~lC   90 (114)
T cd01259          12 GKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHN-VYTGLGWRKKYKSPTDYCFGFKAVGDQSKGSQSIKYLC   90 (114)
T ss_pred             CCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCc-EEEEechhhccCCCCCceEEEeccccCcccchhheeec
Confidence            45789999999999999998877765553334445556554 332211       3568998864321      266899


Q ss_pred             cCCHHHHHHHHHHHHHH
Q psy8929         125 AVTAGIRNNWMSAIKRT  141 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~~  141 (160)
                      |++++.+..||.||+-+
T Consensus        91 aeDe~t~~~W~ta~Ri~  107 (114)
T cd01259          91 AEDLPTLDRWLTAIRIA  107 (114)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            99999999999999865

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.88  E-value=5.1e-08  Score=65.61  Aligned_cols=84  Identities=19%  Similarity=0.252  Sum_probs=63.9

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCcc--------CCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEE--------SGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTA  128 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~--------~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~  128 (160)
                      .+..+.|+|.|=++.|.|.+......        .=...+.|+|..+. |...++  .-+++|.|.+.+++.+.|+|.|+
T Consensus        17 ~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~-V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~   95 (112)
T cd01261          17 KKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVD-INDKPDSSEYKNAFEIILKDGNSVIFSAKNA   95 (112)
T ss_pred             cCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeE-EEEcCCCcccCceEEEEcCCCCEEEEEECCH
Confidence            35677899999999999988544311        01224668888877 444444  34799999986568999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy8929         129 GIRNNWMSAIKRTAA  143 (160)
Q Consensus       129 ~e~~~Wi~al~~~~~  143 (160)
                      +|..+||++|..++.
T Consensus        96 eeK~~Wm~~l~~~~~  110 (112)
T cd01261          96 EEKNNWMAALISVQT  110 (112)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998874

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=98.88  E-value=4.8e-08  Score=65.72  Aligned_cols=83  Identities=22%  Similarity=0.286  Sum_probs=60.8

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccC---CccceeEEcC-CceeeeecCC---------CCCceEEEEeC------CCc
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEES---GVLDGVVALN-NVTSLSEVPV---------ARNFGFQITTW------DSK  119 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~---~~~~g~I~L~-~~~~v~~~~~---------~~~~~F~i~t~------~~r  119 (160)
                      .++|.++|+||.+..|++|..+.+...   ..+.-.|+|. ....|..+..         .-|+-|+|.+.      .+.
T Consensus        17 krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~~~~   96 (122)
T cd01243          17 KKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASSSKC   96 (122)
T ss_pred             ccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCCCcc
Confidence            357999999999999999997775322   2234567783 4333544322         35788999852      246


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHH
Q psy8929         120 RTILSAVTAGIRNNWMSAIKRT  141 (160)
Q Consensus       120 ~~~l~a~s~~e~~~Wi~al~~~  141 (160)
                      +.+|-|+|+.|.+.|+.||...
T Consensus        97 ~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          97 STLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             EEEEEeCCchHHHHHHHHHHHH
Confidence            8999999999999999999874

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=98.73  E-value=2.5e-08  Score=65.99  Aligned_cols=42  Identities=19%  Similarity=0.443  Sum_probs=30.4

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .+.||||||+|+|..|.||++..+... ...+.|+|..|+...
T Consensus        17 ~K~~KrrwF~lk~~~L~YyK~kee~~~-~p~i~lnl~gcev~~   58 (106)
T cd01237          17 LKGYKQYWFTFRDTSISYYKSKEDSNG-APIGQLNLKGCEVTP   58 (106)
T ss_pred             hhhheeEEEEEeCCEEEEEccchhcCC-CCeEEEecCceEEcc
Confidence            467999999999999999998765443 223555666655433

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0248|consensus

Probab=98.71  E-value=1.3e-08  Score=85.46  Aligned_cols=139  Identities=14%  Similarity=0.262  Sum_probs=97.2

Q ss_pred             CCCCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeeccccc-----------------------------
Q psy8929           1 MLNKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----------------------------   51 (160)
Q Consensus         1 ~~~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~-----------------------------   51 (160)
                      |..+.+.|||||||++++..+||+.+.++...+. +.||+++...+.....                             
T Consensus       258 ~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~-s~~d~~s~~~~~~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~i  336 (936)
T KOG0248|consen  258 LTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPA-SKIDIRSVTKLEQQGAAYAFQLITSTDKMNFMTESERTTHDWVTI  336 (936)
T ss_pred             chHHHHHHHhHheeeccceEEEEEcCCCcccccc-CcccccccceeeccchhHHhhhhhhceeEEEeccChhhhhhhHHH
Confidence            4567899999999999999999999988776554 8888887554442221                             


Q ss_pred             --------------ccc-------eee----eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-
Q psy8929          52 --------------ARN-------FGF----QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-  105 (160)
Q Consensus        52 --------------~kk-------~g~----~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-  105 (160)
                                    .+.       .|.    ....-++.|+.|.+.+++||++..+..+   .|...+.....+++... 
T Consensus       337 L~~~iKv~~~~~~a~~~~p~~~~~~GwlT~vk~g~skkv~~alv~~~~~~~k~~~d~rp---~g~l~~~~~h~~ee~~s~  413 (936)
T KOG0248|consen  337 LSAAIKATTLREMASRVTPIDASISGWLTRVKCGLSKKVFAALVNQKLMFFKNSNDLVP---NGFLCLQEKHNGTEEYSG  413 (936)
T ss_pred             HHHHHHHHhccchhhhcCCCCCCcCcceeeeccccceeeeeeeeeeeeEEeeccccccc---ccccchhhhhcceeeccC
Confidence                          000       011    1234578899999999999999998777   67766654443333211 


Q ss_pred             --------------CCCceEEEEeC-CCcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         106 --------------ARNFGFQITTW-DSKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       106 --------------~~~~~F~i~t~-~~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                                    ...++.-|+.+ ++-++||...+.++.+.|+..+..|.+
T Consensus       414 ~sde~~e~~~~r~l~~~~~~l~~~~~~~~p~yLi~~t~e~k~~wly~l~~A~g  466 (936)
T KOG0248|consen  414 SSDEQLETTKEHPQRKNNDSLCVQIANEDPVYLILRTSEDKEKWLYYLKSASG  466 (936)
T ss_pred             CchhhhhhhcCccccccCceEEeccCCCCCEEEEeeeccccceeeeeehhhcc
Confidence                          23455555543 356899999999999999998887655

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=98.69  E-value=2.2e-08  Score=65.50  Aligned_cols=81  Identities=23%  Similarity=0.360  Sum_probs=58.6

Q ss_pred             eeeeeceEEEEEEeCCEE-----EEEeCCCCccCCccceeEEcCCceeeeecCC------------CCCceEEEEeCCCc
Q psy8929          57 FQITTWTKHWFVLRGCSL-----LYYRDPKAEESGVLDGVVALNNVTSLSEVPV------------ARNFGFQITTWDSK  119 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L-----~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~------------~~~~~F~i~t~~~r  119 (160)
                      ...+.||+|||+|.+-+-     +-|+..+. +|   ...|.|.+.+ |.-++.            +..+-|..+-. |-
T Consensus        14 ~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-~P---~e~~qldGyT-vDy~~~~~~~~~~~~~~~gg~~ff~avke-gd   87 (117)
T cd01234          14 NVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-EP---TEFIQLDGYT-VDYMPESDPDPNSELSLQGGRHFFNAVKE-GD   87 (117)
T ss_pred             hhhhhhheeEEEEEchhHHHHHHHhhhhhcC-Cc---hhheeecceE-EeccCCCCCCcccccccccchhhhheecc-Cc
Confidence            378999999999997443     33444443 33   5778999998 444322            23455666654 46


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         120 RTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       120 ~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      ...|.++++.|+..||+||-.|.+
T Consensus        88 ~~~fa~~de~~r~lwvqa~yratg  111 (117)
T cd01234          88 ELKFATDDENERHLWVQAMYRATG  111 (117)
T ss_pred             EEEEeccchHHHHHHHHHHHHHcC
Confidence            899999999999999999998865

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=98.61  E-value=5.5e-07  Score=59.47  Aligned_cols=80  Identities=15%  Similarity=0.295  Sum_probs=52.5

Q ss_pred             eeeceEEEEEEeCC--EEEE--EeCCC--CccCCc-cceeEEcCCceeeeecCC-CCCceEEEEeCCC-cEEEEEcCCHH
Q psy8929          59 ITTWTKHWFVLRGC--SLLY--YRDPK--AEESGV-LDGVVALNNVTSLSEVPV-ARNFGFQITTWDS-KRTILSAVTAG  129 (160)
Q Consensus        59 ~~~WkkrwfvL~~~--~L~y--yk~~~--~~~~~~-~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~-r~~~l~a~s~~  129 (160)
                      ...|.+.||...++  .+.+  +....  +..... -.-.|.|..|. +.+.+. .|.+||+|++++. .++.|+|+|+.
T Consensus        14 ~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~-~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~   92 (104)
T cd01249          14 GGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCS-RRKTESIDKRFCFDVEVEEKPGVITMQALSEK   92 (104)
T ss_pred             CCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeecc-ccccCCccceeeEeeeecCCCCeEEEEecCHH
Confidence            34799999988763  3221  22211  101100 02447777777 455444 7899999988762 28999999999


Q ss_pred             HHHHHHHHHH
Q psy8929         130 IRNNWMSAIK  139 (160)
Q Consensus       130 e~~~Wi~al~  139 (160)
                      ++..||.||.
T Consensus        93 ~~~~Wi~A~d  102 (104)
T cd01249          93 DRRLWIEAMD  102 (104)
T ss_pred             HHHHHHHhhc
Confidence            9999999984

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=98.60  E-value=1.8e-07  Score=64.01  Aligned_cols=39  Identities=23%  Similarity=0.583  Sum_probs=31.5

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .+|++|||||+++.|+||+++.+..+   .|+|.+.....+.
T Consensus        31 ~~w~kRWFvlr~s~L~Y~~~~~~~~~---~~vil~D~~f~v~   69 (121)
T cd01254          31 DRWQKRWFIVKESFLAYMDDPSSAQI---LDVILFDVDFKVN   69 (121)
T ss_pred             cCCcceeEEEeCCEEEEEcCCCCCce---eeEEEEcCCccEE
Confidence            47999999999999999999977555   6888886544443

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=98.60  E-value=2.6e-07  Score=59.36  Aligned_cols=40  Identities=30%  Similarity=0.630  Sum_probs=32.7

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      ..+.|++|||||+++.|.||+++.... ..+.|.|+|..+.
T Consensus        11 ~~~~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~   50 (91)
T cd01246          11 YLKGWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAV   50 (91)
T ss_pred             cCCCceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEE
Confidence            357899999999999999999987642 2337999999864

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=98.60  E-value=1.5e-07  Score=62.47  Aligned_cols=37  Identities=24%  Similarity=0.488  Sum_probs=27.0

Q ss_pred             CCCCceEEEEEEe-CCeEEEeeCCCcccCCcccceeecccc
Q psy8929           4 KKHTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNV   43 (160)
Q Consensus         4 ~~~~Wkkrwfvl~-~~~L~yy~~~~~~~~~~l~g~i~l~~~   43 (160)
                      ..++||+|||||+ ++.|+||++......   .|.|+|...
T Consensus        13 ~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~---~~~i~l~~~   50 (102)
T cd01241          13 YIKTWRPRYFLLKSDGSFIGYKEKPEDGD---PFLPPLNNF   50 (102)
T ss_pred             CCCCCeeEEEEEeCCCeEEEEecCCCccC---ccccccCCe
Confidence            4689999999999 889999987643222   256666653

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=98.57  E-value=1e-07  Score=62.66  Aligned_cols=36  Identities=19%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             CCCceEEEEEEeC----CeEEEeeCCCcccCCcccceeecccc
Q psy8929           5 KHTWTKHWFVLRG----CSLLYYRDPKAEESGVLDGVVALNNV   43 (160)
Q Consensus         5 ~~~Wkkrwfvl~~----~~L~yy~~~~~~~~~~l~g~i~l~~~   43 (160)
                      .|+||+|||+|.+    ..|+||+++.+.++   .|.|+|..+
T Consensus        13 ~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p---~gli~l~~~   52 (98)
T cd01245          13 TKLWKTLYFALILDGSRSHESLLSSPKKTKP---IGLIDLSDA   52 (98)
T ss_pred             ccccceeEEEEecCCCCceEEEEcCCCCCCc---cceeecccc
Confidence            6889999999987    99999999988766   799999987

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0521|consensus

Probab=98.56  E-value=6.5e-08  Score=84.13  Aligned_cols=85  Identities=21%  Similarity=0.360  Sum_probs=71.1

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      +.+...+.|.+|||-..++.+.|+..-.+...   ...++|..|. |...+.  .+.+||+|++++ ++|.|+|+++.+.
T Consensus       283 k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~---~~~~dL~~cs-vk~~~~~~drr~CF~iiS~t-ks~~lQAes~~d~  357 (785)
T KOG0521|consen  283 KASNASKTWKRRWFSIQDGQLGYQHRGADAEN---VLIEDLRTCS-VKPDAEQRDRRFCFEIISPT-KSYLLQAESEKDC  357 (785)
T ss_pred             hcccchhhHHhhhhhhhccccccccccccccc---cccccchhcc-ccCCcccccceeeEEEecCC-cceEEecCchhHH
Confidence            33456899999999999999999888777663   3677888888 444443  589999999986 8999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8929         132 NNWMSAIKRTAA  143 (160)
Q Consensus       132 ~~Wi~al~~~~~  143 (160)
                      ..||.+|+.++.
T Consensus       358 ~~Wi~~i~nsi~  369 (785)
T KOG0521|consen  358 QDWISALQNSIL  369 (785)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999887

>KOG0930|consensus

Probab=98.55  E-value=1.2e-07  Score=72.36  Aligned_cols=39  Identities=31%  Similarity=0.824  Sum_probs=33.9

Q ss_pred             CCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      +..+.||||||+|++.+|+||.-..+.++   .|.|+|.+..
T Consensus       272 ~rvktWKrRWFiLtdNCLYYFe~tTDKEP---rGIIpLeNls  310 (395)
T KOG0930|consen  272 NRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENLS  310 (395)
T ss_pred             CcccchhheeEEeecceeeeeeeccCCCC---Ccceeccccc
Confidence            46789999999999999999998877677   7999998843

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.54  E-value=2.7e-07  Score=76.57  Aligned_cols=84  Identities=24%  Similarity=0.358  Sum_probs=58.3

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC----CCCCceEEEEeCCCcEEEEEcCCHHHHHHHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP----VARNFGFQITTWDSKRTILSAVTAGIRNNWM  135 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~----~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi  135 (160)
                      ..|++|||.+.++.+...........+.....+.+.....+.+++    ..++++|.|.+.+++.++|.|+|++|+++||
T Consensus       390 ~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~  469 (478)
T PTZ00267        390 MRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWI  469 (478)
T ss_pred             cchhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHH
Confidence            359999999998776664332221111112334444444444442    2578999999877889999999999999999


Q ss_pred             HHHHHHhc
Q psy8929         136 SAIKRTAA  143 (160)
Q Consensus       136 ~al~~~~~  143 (160)
                      .+|+.+++
T Consensus       470 ~~~~~~~~  477 (478)
T PTZ00267        470 SKFQRACG  477 (478)
T ss_pred             HHHHHHhC
Confidence            99999875

>KOG1117|consensus

Probab=98.52  E-value=9.6e-08  Score=82.05  Aligned_cols=134  Identities=21%  Similarity=0.289  Sum_probs=93.4

Q ss_pred             ceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccc------------------c----------------
Q psy8929           8 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------------------R----------------   53 (160)
Q Consensus         8 Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~------------------k----------------   53 (160)
                      -.|+||||-|+.|.||++.+...+   .|.|+++.+.++...+..                  +                
T Consensus       518 ~nr~wcVlg~g~ls~fen~~S~tP---~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt  594 (1186)
T KOG1117|consen  518 TNRKWCVLGGGFLSYFENEKSTTP---NGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALRKWT  594 (1186)
T ss_pred             CCCceEEcCcchhhhhhhcCCCCC---CceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHHHHH
Confidence            568999999999999999988888   899999988876643320                  0                


Q ss_pred             ----------------------------ceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC
Q psy8929          54 ----------------------------NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV  105 (160)
Q Consensus        54 ----------------------------k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~  105 (160)
                                                  +-+.....|++-||.|.+..|.+.-..+..+. ...-...|...+....++.
T Consensus       595 ~aiaKhfvp~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfsl~gssl~~~~~~~~ve~-d~~hlrrlqElsi~s~~~n  673 (1186)
T KOG1117|consen  595 EAIAKHFVPLFAENLLAADYDLLGRLFYKDCHALDQARKGWFSLDGSSLHFCLQMQPVEE-DRMHLRRLQELSISSMVQN  673 (1186)
T ss_pred             HHHHHhcCchHHHHhccchhhhhhhhhhcChhhhhhccccceecCCCeeEEecCCCcCch-hHHHHHHHHHHhhhhccCC
Confidence                                        00112345888999999999988766443221 0011112233332233322


Q ss_pred             -CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhcccC
Q psy8929         106 -ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSL  146 (160)
Q Consensus       106 -~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~  146 (160)
                       .+.-.|.|+.. |||+|+..++.-+...|..||++++..+.
T Consensus       674 ~~K~~~l~lve~-grTLYI~g~~rldft~W~~AIekaa~~~g  714 (1186)
T KOG1117|consen  674 GEKLDVLVLVEK-GRTLYIQGETRLDFTVWHTAIEKAAGTDG  714 (1186)
T ss_pred             cccccceEEEee-ccEEEEecCCcchHHHHHHHHHHHhcCCc
Confidence             35667888876 69999999999999999999999988544

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=98.49  E-value=3.3e-07  Score=59.22  Aligned_cols=39  Identities=28%  Similarity=0.530  Sum_probs=30.9

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      .+.|++|||||+++.|.||.++.+..... .+.|+|..+.
T Consensus        13 ~~~W~kr~~~L~~~~l~~y~~~~~~~~~~-~~~i~l~~~~   51 (94)
T cd01250          13 NKEWKKRWFVLKNGQLTYHHRLKDYDNAH-VKEIDLRRCT   51 (94)
T ss_pred             CCCceEEEEEEeCCeEEEEcCCccccccc-ceEEeccceE
Confidence            56899999999999999999887532222 5889998654

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.41  E-value=1.5e-06  Score=58.01  Aligned_cols=83  Identities=19%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccC--CccceeEEcC--Cceeee--ecC---CCCCceEEEEeCCC-cEEEEEcCC
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEES--GVLDGVVALN--NVTSLS--EVP---VARNFGFQITTWDS-KRTILSAVT  127 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~--~~~~g~I~L~--~~~~v~--~~~---~~~~~~F~i~t~~~-r~~~l~a~s  127 (160)
                      ..+.|+.+|++|++..|+.|+.+--...  ..+.-..+|-  ....+.  +..   .+++++|.|.+..+ ..++|+.++
T Consensus        15 ~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~vesh~fsVEt   94 (108)
T cd01258          15 SSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQVENHYLRVET   94 (108)
T ss_pred             cccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcCCceeeEEEEecC
Confidence            4579999999999999999997755211  1112223332  111111  111   26789999999877 899999999


Q ss_pred             HHHHHHHHHHHHH
Q psy8929         128 AGIRNNWMSAIKR  140 (160)
Q Consensus       128 ~~e~~~Wi~al~~  140 (160)
                      ..|+..|..||++
T Consensus        95 ~~dL~~W~raiv~  107 (108)
T cd01258          95 HRDLASWERALVR  107 (108)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999975

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15409 PH_8: Pleckstrin homology domain

Probab=98.40  E-value=1.9e-06  Score=55.53  Aligned_cols=38  Identities=29%  Similarity=0.586  Sum_probs=31.6

Q ss_pred             CCCceEEEEEE--eCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           5 KHTWTKHWFVL--RGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl--~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      -+.|.||||||  .++.|.||+++++.   .+.|.|+++.+..
T Consensus        11 lqG~~kRyFvL~~~~G~LsYy~~~~~~---~~rGsi~v~~a~i   50 (89)
T PF15409_consen   11 LQGWHKRYFVLDFEKGTLSYYRNQNSG---KLRGSIDVSLAVI   50 (89)
T ss_pred             CCCceeEEEEEEcCCcEEEEEecCCCC---eeEeEEEccceEE
Confidence            57799999999  89999999988765   3379999987643

>KOG1739|consensus

Probab=98.37  E-value=9e-07  Score=72.04  Aligned_cols=82  Identities=23%  Similarity=0.437  Sum_probs=66.6

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSA  137 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~a  137 (160)
                      .+..|.-|||+|+.+.|.||+++.+..-|. +|.|.|..... ..- ....+.|.|.+.. -.+++.+.+.+.++.|+++
T Consensus        36 yi~gwqdRyv~lk~g~Lsyykse~E~~hGc-Rgsi~l~ka~i-~ah-EfDe~rfdIsvn~-nv~~lra~~~~hr~~w~d~  111 (611)
T KOG1739|consen   36 YIHGWQDRYVVLKNGALSYYKSEDETEHGC-RGSICLSKAVI-TAH-EFDECRFDISVND-NVWYLRAQDPDHRQQWIDA  111 (611)
T ss_pred             ccccccceEEEEcccchhhhhhhhhhhccc-ceeeEeccCCc-ccc-cchhheeeeEecc-ceeeehhcCcHHHHHHHHH
Confidence            567899999999999999999998866543 79999988762 221 2356789999975 6999999999999999999


Q ss_pred             HHHHhc
Q psy8929         138 IKRTAA  143 (160)
Q Consensus       138 l~~~~~  143 (160)
                      |..-..
T Consensus       112 L~wmk~  117 (611)
T KOG1739|consen  112 LEWMKT  117 (611)
T ss_pred             HHHHhh
Confidence            987443

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=98.37  E-value=7.9e-07  Score=57.74  Aligned_cols=33  Identities=30%  Similarity=0.589  Sum_probs=29.3

Q ss_pred             ceEEEEEEeCCeEEEeeCCCcccCCcccceeecccc
Q psy8929           8 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNV   43 (160)
Q Consensus         8 Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~   43 (160)
                      =|+|||||++.+|+||++..+.++   .+.|+|.+.
T Consensus        19 sK~~WFVLt~~~L~wykd~eeKE~---kyilpLdnL   51 (110)
T cd01256          19 SKDYWFVLTSESLSWYKDDEEKEK---KYMLPLDGL   51 (110)
T ss_pred             CcceEEEEecceeeeecccccccc---cceeecccc
Confidence            489999999999999999988777   789999874

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=98.37  E-value=1e-06  Score=57.07  Aligned_cols=46  Identities=30%  Similarity=0.701  Sum_probs=36.3

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccc
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP   50 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~   50 (160)
                      ..+.|++|||||+++.|+||+++.......+.+.|+|..+ .+....
T Consensus        13 ~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~   58 (104)
T PF00169_consen   13 SRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDP   58 (104)
T ss_dssp             SSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEET
T ss_pred             CCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcC
Confidence            4678999999999999999999985444444799999998 444333

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>KOG0690|consensus

Probab=98.35  E-value=1.4e-06  Score=68.64  Aligned_cols=90  Identities=19%  Similarity=0.273  Sum_probs=60.2

Q ss_pred             cceeeeeeeceEEEEEEe-CCEEEEEeCCCC-ccC-CccceeEEcCCceeeeecCCCCCceEEEEeCCC---cEEEEEcC
Q psy8929          53 RNFGFQITTWTKHWFVLR-GCSLLYYRDPKA-EES-GVLDGVVALNNVTSLSEVPVARNFGFQITTWDS---KRTILSAV  126 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~-~~~L~yyk~~~~-~~~-~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~---r~~~l~a~  126 (160)
                      .|+|-.+++|+.|||+|. ++.|.=|+.... ..+ ..++....+.+|.. -..+..+|+.|.|..-.=   -.-.|.++
T Consensus        22 hKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~-m~~erPrPntFiiRcLQWTTVIERTF~ve  100 (516)
T KOG0690|consen   22 HKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQT-MKTERPRPNTFIIRCLQWTTVIERTFYVE  100 (516)
T ss_pred             hhcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhh-hhccCCCCceEEEEeeeeeeeeeeeeecC
Confidence            456778999999999985 477776765433 221 12345555666552 222335889998863210   12357799


Q ss_pred             CHHHHHHHHHHHHHHhc
Q psy8929         127 TAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       127 s~~e~~~Wi~al~~~~~  143 (160)
                      |++++++|+.||+.+.+
T Consensus       101 s~~eRq~W~~AIq~vsn  117 (516)
T KOG0690|consen  101 SAEERQEWIEAIQAVSN  117 (516)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999998765

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=98.31  E-value=6.6e-06  Score=52.76  Aligned_cols=74  Identities=19%  Similarity=0.233  Sum_probs=55.2

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCC-ceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN-VTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIK  139 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~-~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~  139 (160)
                      .+++|=++|++.--.+|-|+....   .+|.|+++. ...++..   ....|.|.||+ |+|+| .|-+..+..|+.+|.
T Consensus        14 f~kkR~LiLTd~PrL~yvdp~~~~---~KgeIp~s~~~l~v~~~---~~~~F~I~Tp~-rty~l-eD~~~~a~~W~~~I~   85 (89)
T cd01262          14 FAKKRQLILTNGPRLIYVDPVKKV---VKGEIPWSDVELRVEVK---NSSHFFVHTPN-KVYSF-EDPKGRASQWKKAIE   85 (89)
T ss_pred             ccceeeEEEecCceEEEEcCCcCe---EEeEecccccceEEEEe---cCccEEEECCC-ceEEE-ECCCCCHHHHHHHHH
Confidence            569999999985444444444333   379999999 5545544   34789999996 99999 466788999999998


Q ss_pred             HHh
Q psy8929         140 RTA  142 (160)
Q Consensus       140 ~~~  142 (160)
                      .+.
T Consensus        86 ~~~   88 (89)
T cd01262          86 DLQ   88 (89)
T ss_pred             HHh
Confidence            763

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=98.30  E-value=2e-06  Score=71.84  Aligned_cols=55  Identities=16%  Similarity=0.318  Sum_probs=44.9

Q ss_pred             EcCCceeeeecCC-----CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhcccCC
Q psy8929          93 ALNNVTSLSEVPV-----ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLL  147 (160)
Q Consensus        93 ~L~~~~~v~~~~~-----~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~  147 (160)
                      +++..+.+.+++.     +.+++|.+.+.+|+.+.|.|.+++|++.||.+|+++++..+.
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (496)
T PTZ00283        435 PFSDLEDVFPVPSKYTGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLGIGDA  494 (496)
T ss_pred             chhhhcccccccHHhhCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcCCCCC
Confidence            4555555555544     478999999988999999999999999999999999985543

>KOG1117|consensus

Probab=98.28  E-value=1.3e-06  Score=75.28  Aligned_cols=128  Identities=18%  Similarity=0.314  Sum_probs=96.9

Q ss_pred             ceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeeccccccc----------------------------------
Q psy8929           8 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR----------------------------------   53 (160)
Q Consensus         8 Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~k----------------------------------   53 (160)
                      .+|||.-+.+.+|+||.++++.-.   .|.|++..+..+....+.+                                  
T Consensus       104 ~qkr~vkf~~~s~~yf~~~k~py~---k~~i~va~is~v~~~gd~kfevitn~r~fvfr~e~~~~r~~w~s~l~s~~~~Q  180 (1186)
T KOG1117|consen  104 FQKRWVKFDGSSLEYFLSPKDPYS---KGPIPVAAISAVRNFGDNKFEVITNQRTFVFRQESEGERFIWVSPLQSALKEQ  180 (1186)
T ss_pred             cCccceecCCCCccccCCCCCCCC---CCceeeehhhhhhhccCceEEEEecceEEEEecCCcccceeeechhhhcchhh
Confidence            689999999999999999988777   7888887766655333210                                  


Q ss_pred             -ce------------ee-eeeece-EEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCC
Q psy8929          54 -NF------------GF-QITTWT-KHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS  118 (160)
Q Consensus        54 -k~------------g~-~~~~Wk-krwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~  118 (160)
                       ..            |. ...+.| +-|.+|.++.+..||+.++-..+..+..|++..+. |.+++   ...|.++|+- 
T Consensus       181 ~l~~ap~pp~pP~raG~lelrg~kak~f~~vsp~~vqL~knlq~f~lgigit~I~m~~~n-vk~vd---r~sfdl~Tp~-  255 (1186)
T KOG1117|consen  181 RLRSAPPPPVPPPRAGWLELRGFKAKLFVAVSPERVQLYKNLQSFPLGIGITFIYMEVSN-VKEVD---RRSFDLNTPY-  255 (1186)
T ss_pred             hhccCCCCCCCCCCccchhccccccceeEEecCceeeeecccccccCCceeEEEeccccc-ccccc---cceeccCCce-
Confidence             00            10 122333 45778999999999999997766555667777666 45442   3789999995 


Q ss_pred             cEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         119 KRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       119 r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      |.|-|.|+++.+++.|+.|++.++.
T Consensus       256 r~fsftaese~erq~w~ea~q~siA  280 (1186)
T KOG1117|consen  256 REFSFTAESETERQIWGEAPQPSIA  280 (1186)
T ss_pred             eeeeeeeccchhhhhhhhccCcccc
Confidence            9999999999999999999999876

>KOG3723|consensus

Probab=98.27  E-value=2.5e-07  Score=76.67  Aligned_cols=89  Identities=25%  Similarity=0.405  Sum_probs=69.7

Q ss_pred             eeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-----CCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          57 FQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----ARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-----~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      ..++.|+.|||.|.+..|.|-+.....+..  ...|+|..+.+|..+..     .-+-.|+|.|.+ .+|.|.|.++.-+
T Consensus       749 Rf~kRW~TrYFTLSgA~L~~~kg~s~~dS~--~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD-~T~ILKaKDeKNA  825 (851)
T KOG3723|consen  749 RFIKRWKTRYFTLSGAQLLFQKGKSKDDSD--DCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILKAKDEKNA  825 (851)
T ss_pred             hhhhhhccceEEecchhhhcccCCCCCCCC--CCCccHHHhhhHHHHHhhhhhcccchhhheeecC-ceEEeecccccCH
Confidence            357999999999999999996644332210  36699999988775432     235689999998 6899999999999


Q ss_pred             HHHHHHHHHHhcccCCC
Q psy8929         132 NNWMSAIKRTAAMSLLD  148 (160)
Q Consensus       132 ~~Wi~al~~~~~~~~~~  148 (160)
                      ++|++.|+=++.+...+
T Consensus       826 EEWlqCL~IavAHa~~r  842 (851)
T KOG3723|consen  826 EEWLQCLNIAVAHAKER  842 (851)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999888765533

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=98.27  E-value=2.5e-05  Score=52.13  Aligned_cols=77  Identities=12%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             eEEEEEEeCCEEEEEeCCCCccC-CccceeEEcCCceeeeecCCC--------CCceEEEEeCC-CcEEEEEcCCHHHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEES-GVLDGVVALNNVTSLSEVPVA--------RNFGFQITTWD-SKRTILSAVTAGIRN  132 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~~-~~~~g~I~L~~~~~v~~~~~~--------~~~~F~i~t~~-~r~~~l~a~s~~e~~  132 (160)
                      +.|.|.|=++.|.|.|.+..... =..+|.|+|..+. |...+++        -.|+|.|+..+ +..|.|+|.|+++..
T Consensus        19 q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~-I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~   97 (109)
T cd01224          19 SSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCE-VVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKH   97 (109)
T ss_pred             ccEEEEEecceEEEEecccccCCcEEEEEEEEcccEE-EEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHH
Confidence            46899999999999995432111 1236999999998 5554442        36899999654 468999999999999


Q ss_pred             HHHHHHHH
Q psy8929         133 NWMSAIKR  140 (160)
Q Consensus       133 ~Wi~al~~  140 (160)
                      .||+||..
T Consensus        98 ~Wm~a~~~  105 (109)
T cd01224          98 RWLSAFAL  105 (109)
T ss_pred             HHHHHHHH
Confidence            99999975

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=98.24  E-value=1.5e-06  Score=57.40  Aligned_cols=87  Identities=14%  Similarity=0.347  Sum_probs=68.3

Q ss_pred             cce-eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeee--cCCCCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          53 RNF-GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE--VPVARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        53 kk~-g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~--~~~~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      +|. |.....|++|||-|-++.|.+|....++.+    ..|.+..+..|+.  ......+|+.|...+++.++|.++++-
T Consensus        10 ~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~----eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i   85 (116)
T cd01240          10 KKLGGPFLSQWQTRYFKLYPNRLELYGESEANKP----ELITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVLTNSDEI   85 (116)
T ss_pred             hhhCCHHHHHHHHHHheeCcceeeecccccccCC----cEEEeehhhhcchhheeeccCceEEEEEcCCceEEEecCCcH
Confidence            444 445688999999999999999765555444    6677777665442  222567899999988899999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy8929         130 IRNNWMSAIKRTAA  143 (160)
Q Consensus       130 e~~~Wi~al~~~~~  143 (160)
                      +..+|...|+.+..
T Consensus        86 ~l~qW~~elr~a~r   99 (116)
T cd01240          86 ELKQWKKELRDAHR   99 (116)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998765

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=98.24  E-value=3.1e-06  Score=56.04  Aligned_cols=38  Identities=32%  Similarity=0.582  Sum_probs=27.7

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccc--eeecccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDG--VVALNNV   43 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g--~i~l~~~   43 (160)
                      .++|++|||||+++.|.||+++...... ..+  .|++..+
T Consensus        20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~-~~~~~~i~l~~~   59 (104)
T cd01253          20 NRSWDNVYGVLCGQSLSFYKDEKMAAEN-VHGEPPVDLTGA   59 (104)
T ss_pred             CCCcceEEEEEeCCEEEEEecCcccccC-CCCCCcEeccCC
Confidence            5789999999999999999987643221 134  5666543

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=98.23  E-value=1.7e-05  Score=52.77  Aligned_cols=80  Identities=14%  Similarity=0.200  Sum_probs=60.4

Q ss_pred             ceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHH
Q psy8929          62 WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIK  139 (160)
Q Consensus        62 WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~  139 (160)
                      =..||++|-+..|.+.........=.-.|.++|++.. |...++  ..++.|+|.-+--.+..+.|.+.+|..+|+..|+
T Consensus        28 ~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~-v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~  106 (111)
T cd01225          28 KRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGII-VTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLN  106 (111)
T ss_pred             cceeEEEEcCceEEEEEcCCCccceEEeeeecccccE-EechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHH
Confidence            4579999999999987764321111226999999998 443332  5679999997655688899999999999999998


Q ss_pred             HHh
Q psy8929         140 RTA  142 (160)
Q Consensus       140 ~~~  142 (160)
                      +-+
T Consensus       107 ~~~  109 (111)
T cd01225         107 ANN  109 (111)
T ss_pred             hhc
Confidence            854

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0932|consensus

Probab=98.20  E-value=5.4e-07  Score=74.55  Aligned_cols=85  Identities=20%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             eeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeee-----ecCC--CCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          57 FQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS-----EVPV--ARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~-----~~~~--~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      ++..+||.-|-+|+|-.||+-+|+-....  .+-.-+|.+...|.     +..+  +++++|.+.|.+.|.|.|+|.+.+
T Consensus       527 rGkRgWk~fya~LkG~vLYlqkDey~p~k--alse~~lknavsvHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~e  604 (774)
T KOG0932|consen  527 RGKRGWKMFYAVLKGMVLYLQKDEYKPGK--ALSESDLKNAVSVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQE  604 (774)
T ss_pred             ccchhHHHHHHHHhhheEEeeccccCccc--chhhhhhhhhhhhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHH
Confidence            45678999999999999999887654222  11112233333222     2222  689999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy8929         130 IRNNWMSAIKRTAA  143 (160)
Q Consensus       130 e~~~Wi~al~~~~~  143 (160)
                      ||..||..|+-+..
T Consensus       605 EmqsWi~rIN~vAA  618 (774)
T KOG0932|consen  605 EMQSWIERINLVAA  618 (774)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987654

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=98.19  E-value=2.6e-05  Score=53.44  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=59.6

Q ss_pred             eeeceEEEEEEeC--CEEEEEeCCCC-ccC-CccceeEEcCCceeeeecCC---C-----CCceEEEEeCCCcEEEEEcC
Q psy8929          59 ITTWTKHWFVLRG--CSLLYYRDPKA-EES-GVLDGVVALNNVTSLSEVPV---A-----RNFGFQITTWDSKRTILSAV  126 (160)
Q Consensus        59 ~~~WkkrwfvL~~--~~L~yyk~~~~-~~~-~~~~g~I~L~~~~~v~~~~~---~-----~~~~F~i~t~~~r~~~l~a~  126 (160)
                      ....++|||-|.+  .+|++...+.. ... ..-.+.|.|.++..|.....   .     ..++|.|.+++ |++-|.|+
T Consensus        27 ~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~-R~L~l~a~  105 (123)
T PF12814_consen   27 SEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPD-RSLDLTAP  105 (123)
T ss_pred             CCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEEEcCC-eEEEEEeC
Confidence            3578999999998  66777664321 111 01135688888887665322   2     34678888885 99999999


Q ss_pred             CHHHHHHHHHHHHHHhc
Q psy8929         127 TAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       127 s~~e~~~Wi~al~~~~~  143 (160)
                      |.++.+-|+.+|+-.+.
T Consensus       106 s~~~~~~W~~aL~~L~~  122 (123)
T PF12814_consen  106 SRERHEIWFNALRYLLQ  122 (123)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999987653

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=98.18  E-value=1.8e-06  Score=58.23  Aligned_cols=26  Identities=46%  Similarity=1.025  Sum_probs=18.8

Q ss_pred             CC-CCCceEEEEEEe-CCeEEEeeCCCc
Q psy8929           3 NK-KHTWTKHWFVLR-GCSLLYYRDPKA   28 (160)
Q Consensus         3 ~~-~~~Wkkrwfvl~-~~~L~yy~~~~~   28 (160)
                      ++ .+.||+|||||+ |+.|.||+.+.+
T Consensus        10 ~~~~kgWk~RwFiL~k~~~L~YyK~~~~   37 (112)
T PF15413_consen   10 NKFGKGWKKRWFILRKDGVLSYYKIPRD   37 (112)
T ss_dssp             TTS-S--EEEEEEEE-TTEEEEESS---
T ss_pred             CCCCcCccccEEEEEeCCEEEEeecccc
Confidence            45 789999999999 999999999543

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=98.18  E-value=3.8e-05  Score=50.42  Aligned_cols=77  Identities=16%  Similarity=0.271  Sum_probs=58.0

Q ss_pred             eEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCC--cEEEEEcCCHHHHHHHHHHHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS--KRTILSAVTAGIRNNWMSAIKR  140 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~--r~~~l~a~s~~e~~~Wi~al~~  140 (160)
                      +.|++-|=+..|.|.|...+.-  ..+..|.+++....+..+ +.+++|.|...+.  +.|.|+|.|+++.+.||++|+.
T Consensus        17 ~eR~vFLFe~~ll~~K~~~~~y--~~K~~i~~~~l~i~e~~~-~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~   93 (97)
T cd01222          17 KPRLLFLFQTMLLIAKPRGDKY--QFKAYIPCKNLMLVEHLP-GEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKR   93 (97)
T ss_pred             CceEEEEecccEEEEEecCCee--EEEEEEEecceEEecCCC-CCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHH
Confidence            3577778888888877655432  235778888888544443 3589999976531  5999999999999999999998


Q ss_pred             Hh
Q psy8929         141 TA  142 (160)
Q Consensus       141 ~~  142 (160)
                      ++
T Consensus        94 ~i   95 (97)
T cd01222          94 AM   95 (97)
T ss_pred             Hh
Confidence            76

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG4807|consensus

Probab=98.03  E-value=1.4e-08  Score=80.58  Aligned_cols=85  Identities=49%  Similarity=0.864  Sum_probs=75.2

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSA  137 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~a  137 (160)
                      ....|++.|||+++..+.||.+....+.....|.|+|..|+.|..+...+.|.|+|.+.+ ..|.|.+.+...+..||.|
T Consensus        31 ~t~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a~q~nY~~~i~~~~-~~~tL~~~~s~Ir~~~~~A  109 (593)
T KOG4807|consen   31 STSQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKD-AVYTLSAMTSGIRRNWIEA  109 (593)
T ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHHHHhccceeecccc-hhhhhHHHHHHHHHHHHHH
Confidence            345799999999999999999988876666689999999998887777889999999986 7999999999999999999


Q ss_pred             HHHHhc
Q psy8929         138 IKRTAA  143 (160)
Q Consensus       138 l~~~~~  143 (160)
                      +++...
T Consensus       110 ~~kT~~  115 (593)
T KOG4807|consen  110 LRKTVR  115 (593)
T ss_pred             HHhccC
Confidence            998654

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=98.01  E-value=0.00011  Score=48.24  Aligned_cols=53  Identities=15%  Similarity=0.339  Sum_probs=44.7

Q ss_pred             ceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929          89 DGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus        89 ~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      ...++|.+.. |..+++  .-+++|.|.++. +.+.++|+|+++..+||++|+++..
T Consensus        45 ~~~~~L~~i~-V~ni~D~~~~kNafki~t~~-~s~i~qaes~~~K~eWl~~le~a~~   99 (100)
T cd01226          45 ESTYSLNSVA-VVNVKDRENAKKVLKLLIFP-ESRIYQCESARIKTEWFEELEQAKR   99 (100)
T ss_pred             EEEEehHHeE-EEecCCCcCcCceEEEEeCC-ccEEEEeCCHHHHHHHHHHHHHHhc
Confidence            6889999988 444443  467999999986 7999999999999999999999863

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PLN02866 phospholipase D

Probab=98.01  E-value=5.7e-05  Score=67.18  Aligned_cols=80  Identities=21%  Similarity=0.441  Sum_probs=60.8

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCce--------eeee---cC--CCCCceEEEEeCCCcEEEEEcC
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT--------SLSE---VP--VARNFGFQITTWDSKRTILSAV  126 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~--------~v~~---~~--~~~~~~F~i~t~~~r~~~l~a~  126 (160)
                      ..|.+|||||+++.|.|.+++.+..+   ...|.+....        .+..   ..  ..-.++|.|...+ |.+.|.|.
T Consensus       216 ~~w~k~w~v~k~~~l~~~~~p~~~~~---~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~-r~l~l~~~  291 (1068)
T PLN02866        216 DNWQKVWAVLKPGFLALLEDPFDAKP---LDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGN-RSIRLRTK  291 (1068)
T ss_pred             CchheeEEEEeccEEEEEecCCCCce---eEEEEEecccccccCCCcceeecccccccCCCcceEEEecCc-eEEEEEEC
Confidence            56999999999999999988887665   5555444211        0111   10  1246899998875 99999999


Q ss_pred             CHHHHHHHHHHHHHHhc
Q psy8929         127 TAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       127 s~~e~~~Wi~al~~~~~  143 (160)
                      |..++..|+.+|+.+..
T Consensus       292 s~~~~~~w~~ai~~~~~  308 (1068)
T PLN02866        292 SSAKVKDWVAAINDAGL  308 (1068)
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999999874

>KOG3531|consensus

Probab=97.99  E-value=5.8e-06  Score=71.22  Aligned_cols=84  Identities=15%  Similarity=0.306  Sum_probs=70.9

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCCcEEEEEcCCHHHHHHHHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDSKRTILSAVTAGIRNNWMS  136 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~  136 (160)
                      ..|.|-|.|.+.-+|++||+-+|+.+   ..+++|-+++.-.+.+.   .+.++|.+...+ ..|+|.|++.-..+.|+.
T Consensus       938 sgwqkLwvvft~fcl~fyKS~qD~~~---laslPlLgysvs~P~~~d~i~K~~vfkl~fk~-hvyffraes~yt~~rw~e 1013 (1036)
T KOG3531|consen  938 SGWQKLWVVFTNFCLFFYKSHQDSEP---LASLPLLGYSVSIPAEPDPIQKDYVFKLKFKS-HVYFFRAESYYTFERWME 1013 (1036)
T ss_pred             ccceeeeeeecceeeEeecccccccc---cccccccccccCCCCCCCCcchhheeeeehhh-hHHHHhhhhhhhhhhHHH
Confidence            47999999999999999999999988   88899988874333322   678999999986 699999999999999999


Q ss_pred             HHHHHhcccCC
Q psy8929         137 AIKRTAAMSLL  147 (160)
Q Consensus       137 al~~~~~~~~~  147 (160)
                      .|+.+-...+.
T Consensus      1014 vi~~a~~s~d~ 1024 (1036)
T KOG3531|consen 1014 VITDAPSSADR 1024 (1036)
T ss_pred             HhhcCCccCCC
Confidence            99987554433

>KOG3751|consensus

Probab=97.96  E-value=2e-05  Score=64.93  Aligned_cols=86  Identities=24%  Similarity=0.409  Sum_probs=58.2

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-------CCCceEEEEeCC---C-c-EEEE
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARNFGFQITTWD---S-K-RTIL  123 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-------~~~~~F~i~t~~---~-r-~~~l  123 (160)
                      +.+.+.|||.||||+..-|||+...+..++.-+....++.+.. |...-.       ...++|.|....   . | .-+|
T Consensus       327 ~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~sn-VYt~i~~rKkyksPTd~~f~~K~~~~~~~~r~lk~l  405 (622)
T KOG3751|consen  327 EDGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSN-VYTGIGGRKKYKSPTDYGFCIKPNKLRNKRRFLKML  405 (622)
T ss_pred             ccccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCc-eEEeecchhccCCCCCceEEeeeccccCcccceeee
Confidence            3456899999999999999999887776652222333344433 222111       245777776321   1 2 4589


Q ss_pred             EcCCHHHHHHHHHHHHHHh
Q psy8929         124 SAVTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       124 ~a~s~~e~~~Wi~al~~~~  142 (160)
                      ||+++..+..|+.||+-+.
T Consensus       406 CAEDe~t~~~WltAiRl~K  424 (622)
T KOG3751|consen  406 CAEDEQTRTCWLTAIRLLK  424 (622)
T ss_pred             ecccchhHHHHHHHHHHHH
Confidence            9999999999999998743

>PF15406 PH_6: Pleckstrin homology domain

Probab=97.95  E-value=4.2e-05  Score=50.62  Aligned_cols=67  Identities=16%  Similarity=0.353  Sum_probs=46.9

Q ss_pred             EEEeCCE-EEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy8929          67 FVLRGCS-LLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR  140 (160)
Q Consensus        67 fvL~~~~-L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~  140 (160)
                      -.=+|.- |+|-+.++...|   -|.|+|..++.+..-   ..+.|.+... |....|.|.+..|++.||.+|..
T Consensus        44 AsqTGKGLLF~~K~~dka~P---~GiinLadase~~~~---g~~kF~f~~~-G~khtF~A~s~aERD~Wv~~lk~  111 (112)
T PF15406_consen   44 ASQTGKGLLFFSKAEDKASP---SGIINLADASEPEKD---GSNKFHFKIK-GHKHTFEAASAAERDNWVAQLKA  111 (112)
T ss_pred             hhccCceEEEEeccccccCC---cceEehhhccccccC---CCceEEEEeC-CceeeeecCCHHHhccHHHHhhc
Confidence            3445544 455543333444   799999998755542   3456766664 57999999999999999999863

>KOG0248|consensus

Probab=97.89  E-value=8.5e-06  Score=68.98  Aligned_cols=88  Identities=13%  Similarity=0.336  Sum_probs=69.4

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      ++-+...+.|++||||++.+.+.||+.+.+... .+.+.|++.....+...  +-...|++++.. .+|+|.++++--..
T Consensus       256 ~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~-~p~s~~d~~s~~~~~~~--~~s~~fqli~~t-~~~~~~~~s~~lt~  331 (936)
T KOG0248|consen  256 TQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDE-EPASKIDIRSVTKLEQQ--GAAYAFQLITST-DKMNFMTESERTTH  331 (936)
T ss_pred             hcchHHHHHHHhHheeeccceEEEEEcCCCccc-cccCcccccccceeecc--chhHHhhhhhhc-eeEEEeccChhhhh
Confidence            344556789999999999999999998877432 12688888877643322  345789999864 79999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8929         133 NWMSAIKRTAAM  144 (160)
Q Consensus       133 ~Wi~al~~~~~~  144 (160)
                      +|+..|+.+|..
T Consensus       332 dw~~iL~~~iKv  343 (936)
T KOG0248|consen  332 DWVTILSAAIKA  343 (936)
T ss_pred             hhHHHHHHHHHH
Confidence            999999998883

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=97.81  E-value=0.00015  Score=47.31  Aligned_cols=79  Identities=20%  Similarity=0.389  Sum_probs=55.0

Q ss_pred             eeceEEEEEEeC----CEEEEEeC--CCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          60 TTWTKHWFVLRG----CSLLYYRD--PKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        60 ~~WkkrwfvL~~----~~L~yyk~--~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      ..|.+.=.+|..    ..|.+|.-  ++...+   +-.|....+..|.....    .+.|.|.|...++..|.|.|.+++
T Consensus        19 ~~WqkcRl~L~~~~gg~~le~~~~~pPKssrp---k~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~   95 (107)
T cd01231          19 ARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKP---KLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQ   95 (107)
T ss_pred             cccceeeEEEEecCCCceEEEEccCCCCCCCC---ccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHH
Confidence            457776666652    45555554  555555   44455555544443322    478999999877789999999999


Q ss_pred             HHHHHHHHHHHH
Q psy8929         130 IRNNWMSAIKRT  141 (160)
Q Consensus       130 e~~~Wi~al~~~  141 (160)
                      +++.|+..|+.+
T Consensus        96 q~~SWla~Ir~C  107 (107)
T cd01231          96 QLNSWLAELRYC  107 (107)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999853

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=97.78  E-value=0.0001  Score=63.21  Aligned_cols=85  Identities=13%  Similarity=0.182  Sum_probs=63.0

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-----CCCceEEEEeC--CCcEEEEEcCCHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----ARNFGFQITTW--DSKRTILSAVTAGIR  131 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-----~~~~~F~i~t~--~~r~~~l~a~s~~e~  131 (160)
                      ..--++|||||.+..|.|||..-... ..++.+..|.+...|+....     .--|.|.|...  ..+...|.|-+.+|+
T Consensus        20 ~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea   98 (719)
T PLN00188         20 RSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEA   98 (719)
T ss_pred             cccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEecCCCccccEEEecCCHHHH
Confidence            34568999999999999999754332 33467777777776776533     12366777632  236889999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8929         132 NNWMSAIKRTAAM  144 (160)
Q Consensus       132 ~~Wi~al~~~~~~  144 (160)
                      ..|+.||+.++..
T Consensus        99 ~~W~~a~~~a~~q  111 (719)
T PLN00188         99 LIWKEKIESVIDQ  111 (719)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999883

>KOG4807|consensus

Probab=97.73  E-value=2e-07  Score=74.12  Aligned_cols=56  Identities=54%  Similarity=0.953  Sum_probs=50.9

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeee
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT   61 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~   61 (160)
                      ..|++.||||.+.+|.||++..++.+..|+|+|+|.+|.++.+..+.+.||+.+++
T Consensus        33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a~q~nY~~~i~~   88 (593)
T KOG4807|consen   33 SQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHT   88 (593)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHHHHhccceeecc
Confidence            35999999999999999999999999999999999999999999999999876544

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=97.67  E-value=0.0011  Score=44.77  Aligned_cols=79  Identities=18%  Similarity=0.338  Sum_probs=52.4

Q ss_pred             EEEEEEeCCEEEEEeCCCCccC-C----ccceeEEcCCceeeeecCCCCCceEEEEeCCC----cEEEEEcCCHHHHHHH
Q psy8929          64 KHWFVLRGCSLLYYRDPKAEES-G----VLDGVVALNNVTSLSEVPVARNFGFQITTWDS----KRTILSAVTAGIRNNW  134 (160)
Q Consensus        64 krwfvL~~~~L~yyk~~~~~~~-~----~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~----r~~~l~a~s~~e~~~W  134 (160)
                      .|-+-|=...|.|.+-..+... +    .-+..|.++... +.+...+.+..|+|...+.    .+|.++|.|.++.+.|
T Consensus        26 eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~-l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W  104 (114)
T cd01232          26 ERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMG-LTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEW  104 (114)
T ss_pred             eeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeE-eEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHH
Confidence            4555566666666664322110 0    112567777776 5554445678898875432    5999999999999999


Q ss_pred             HHHHHHHhc
Q psy8929         135 MSAIKRTAA  143 (160)
Q Consensus       135 i~al~~~~~  143 (160)
                      +..|++++.
T Consensus       105 ~~~I~~il~  113 (114)
T cd01232         105 VKKIREILQ  113 (114)
T ss_pred             HHHHHHHhh
Confidence            999998763

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15408 PH_7: Pleckstrin homology domain

Probab=97.64  E-value=2e-05  Score=49.90  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=55.7

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CC------CceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---AR------NFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~------~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      .-++||.+|++..|.+|.+.....    ..+..|+......+.-.   .-      .++|-...++++...+.|++.+.+
T Consensus        11 si~rRF~~L~~K~~~~~~~KGG~~----L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~~~~~FA~S~~~~   86 (104)
T PF15408_consen   11 SIQRRFVMLRSKQFNMYEDKGGQY----LCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRRHVQCFASSKKVC   86 (104)
T ss_pred             hHHHHHHhhhhceeEEecccCCce----eeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcchhhhhhhHHHHH
Confidence            346799999999999999887765    46666665543222111   11      236666778888888999999999


Q ss_pred             HHHHHHHHH
Q psy8929         132 NNWMSAIKR  140 (160)
Q Consensus       132 ~~Wi~al~~  140 (160)
                      +.||+++++
T Consensus        87 ~~Wi~~mN~   95 (104)
T PF15408_consen   87 QSWIQVMNS   95 (104)
T ss_pred             HHHHHHhcC
Confidence            999999976

>smart00233 PH Pleckstrin homology domain

Probab=97.63  E-value=0.00058  Score=43.19  Aligned_cols=45  Identities=36%  Similarity=0.735  Sum_probs=35.0

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP   50 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~   50 (160)
                      ...|++|||+|.++.|.||+++.......+.+.|+|..+ .+....
T Consensus        15 ~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~   59 (102)
T smart00233       15 KKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAP   59 (102)
T ss_pred             cCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCC
Confidence            467999999999999999998876443455789999997 444333

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=97.58  E-value=0.00021  Score=47.93  Aligned_cols=72  Identities=15%  Similarity=0.287  Sum_probs=52.5

Q ss_pred             CCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCC
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPK   81 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~   81 (160)
                      ++.+.|||++++|....|.+|.++...+.   ...|+|+++..+.......    ....-....|.+.-..+.||-.+.
T Consensus        11 ~~d~~rKRhYWrLDsK~Itlf~~e~~sky---yKeIPLsEIl~V~~~~~~~----~~~~~~~hcFEi~T~~~vY~VG~~   82 (117)
T cd01239          11 SSDNRRKKHYWRLDSKAITLYQEESGSRY---YKEIPLAEILSVSSNNGDS----VLAKHPPHCFEIRTTTNVYFVGGE   82 (117)
T ss_pred             cCccceeeeEEEecCCeEEEEEcCCCCee---eEEeehHHheEEeccCCCc----CCCCCCCcEEEEEecCEEEEeccc
Confidence            56789999999999999999999987777   7899999998877542221    111222345666667777777554

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=97.54  E-value=0.00034  Score=47.51  Aligned_cols=40  Identities=20%  Similarity=0.441  Sum_probs=30.6

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCC----cccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESG----VLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~----~l~g~i~l~~~~   44 (160)
                      .+.|+++|+||++..|+.|++......+    .++..|.|..+.
T Consensus        23 ~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~   66 (117)
T cd01230          23 KRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHAL   66 (117)
T ss_pred             CCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccce
Confidence            3689999999999999999998642222    234677888766

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=97.50  E-value=0.0013  Score=44.43  Aligned_cols=80  Identities=11%  Similarity=0.230  Sum_probs=56.0

Q ss_pred             eEEEEEEeCCEEEEEeCCCCcc--C-CccceeEEcCCceeeeecC--C------CCCceEEEEeCCC-cEEEEEcCCHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEE--S-GVLDGVVALNNVTSLSEVP--V------ARNFGFQITTWDS-KRTILSAVTAGI  130 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~--~-~~~~g~I~L~~~~~v~~~~--~------~~~~~F~i~t~~~-r~~~l~a~s~~e  130 (160)
                      +.|+.-|=+..|...|...+..  + =.....+.|..+. |...+  +      ...++|.|...++ ..|.|+|.|+++
T Consensus        21 k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~-I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~   99 (116)
T cd01223          21 KLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYK-IENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHL   99 (116)
T ss_pred             ceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheee-eEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHH
Confidence            4688888888888888554421  0 0113456666655 33221  1      2457899998764 689999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8929         131 RNNWMSAIKRTAA  143 (160)
Q Consensus       131 ~~~Wi~al~~~~~  143 (160)
                      ...||.+|..|+.
T Consensus       100 K~kWm~al~~a~s  112 (116)
T cd01223         100 RKKWLKALEMAMS  112 (116)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999876

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=97.35  E-value=0.0028  Score=42.71  Aligned_cols=73  Identities=19%  Similarity=0.324  Sum_probs=50.4

Q ss_pred             EEEEEEeC-CEEEEEeCCCCccCCccceeEEcCCceeeeecCC---------------CCCceEEEEeCCC---cEEEEE
Q psy8929          64 KHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---------------ARNFGFQITTWDS---KRTILS  124 (160)
Q Consensus        64 krwfvL~~-~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---------------~~~~~F~i~t~~~---r~~~l~  124 (160)
                      ++.|.|.. +...|+.+.....    .+.|+|..+..|.....               ....+|.|+....   +++.|.
T Consensus        23 ~~~f~ld~~~~~l~W~~~~~~~----~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~lV   98 (115)
T cd01248          23 RRLFRLDEKGFFLYWKDEGKKE----KKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLDLV   98 (115)
T ss_pred             eEEEEEcCCCcEEEEeCCCCcc----ccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEEEE
Confidence            56688864 4444445443322    47788888877654321               1237899987543   589999


Q ss_pred             cCCHHHHHHHHHHHHH
Q psy8929         125 AVTAGIRNNWMSAIKR  140 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~  140 (160)
                      |+|+++++.|+..|+.
T Consensus        99 A~s~~~a~~W~~gL~~  114 (115)
T cd01248          99 APSEEEAKTWVSGLRK  114 (115)
T ss_pred             ECCHHHHHHHHHHHhh
Confidence            9999999999999974

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3640|consensus

Probab=97.30  E-value=0.0001  Score=64.48  Aligned_cols=59  Identities=27%  Similarity=0.526  Sum_probs=46.5

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccc-----cceeeeeeeceE
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-----RNFGFQITTWTK   64 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~-----kk~g~~~~~Wkk   64 (160)
                      ..|-||||+|.++.+.|++.|.+|+.....|.|||+.|..-...+..     +...|.+..|+.
T Consensus      1006 GaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rP 1069 (1116)
T KOG3640|consen 1006 GAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRP 1069 (1116)
T ss_pred             chhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEeecc
Confidence            46999999999999999999999998888899999999874433322     334566666654

>cd00900 PH-like Pleckstrin homology-like domain

Probab=97.24  E-value=0.0029  Score=39.78  Aligned_cols=37  Identities=27%  Similarity=0.679  Sum_probs=30.0

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      ..|++|||+|.+..|.||.++.......  +.+++..+.
T Consensus        17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~--~~~~l~~~~   53 (99)
T cd00900          17 KRWKRRWFFLFDDGLLLYKSDDKKEIKP--GSIPLSEIS   53 (99)
T ss_pred             cCceeeEEEEECCEEEEEEcCCCCcCCC--CEEEccceE
Confidence            6899999999999999999987655521  678887765

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=97.24  E-value=0.00021  Score=47.64  Aligned_cols=39  Identities=31%  Similarity=0.589  Sum_probs=28.1

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccc
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN   42 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~   42 (160)
                      -.+.|||+|||||...|+|+...+...+..|.-..++..
T Consensus        12 gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~   50 (114)
T cd01259          12 GKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHG   50 (114)
T ss_pred             CCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhccc
Confidence            368899999999999999997776655544433334433

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=97.17  E-value=0.0036  Score=42.88  Aligned_cols=78  Identities=21%  Similarity=0.214  Sum_probs=46.1

Q ss_pred             ceEEEEEEeCCEEEEEeCCCCccCCc----cceeEEcCCceeeeec------CCCCCceEEEEeC---CC--cEEEEEcC
Q psy8929          62 WTKHWFVLRGCSLLYYRDPKAEESGV----LDGVVALNNVTSLSEV------PVARNFGFQITTW---DS--KRTILSAV  126 (160)
Q Consensus        62 WkkrwfvL~~~~L~yyk~~~~~~~~~----~~g~I~L~~~~~v~~~------~~~~~~~F~i~t~---~~--r~~~l~a~  126 (160)
                      -+.+|+.|=.+.|.|.+...+..-..    +...+.+..+......      ....++.|.|+.-   +|  +.+.|+|+
T Consensus        27 ~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~  106 (125)
T cd01221          27 ARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSAD  106 (125)
T ss_pred             CCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEEEEEEECC
Confidence            34578888888888877554321100    0223333332211100      0035789999721   12  57999999


Q ss_pred             CHHHHHHHHHHHH
Q psy8929         127 TAGIRNNWMSAIK  139 (160)
Q Consensus       127 s~~e~~~Wi~al~  139 (160)
                      |+.|+.+||.||.
T Consensus       107 S~sdr~rWi~Al~  119 (125)
T cd01221         107 SQSDRERWLSALA  119 (125)
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999984

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=97.08  E-value=0.0045  Score=38.55  Aligned_cols=38  Identities=32%  Similarity=0.671  Sum_probs=30.6

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccc
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNV   43 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~   43 (160)
                      ..|++|||+|.++.|.+|.++.......+.+.|+|..+
T Consensus        14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~   51 (96)
T cd00821          14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGA   51 (96)
T ss_pred             CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCC
Confidence            67999999999999999998865323344789999983

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=97.07  E-value=0.0051  Score=40.84  Aligned_cols=59  Identities=22%  Similarity=0.367  Sum_probs=38.3

Q ss_pred             ceEEEEEEeCC-eEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           8 WTKHWFVLRGC-SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         8 Wkkrwfvl~~~-~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      .|+|||+|+++ .|+|+......    +.|.|+++....+..           ++- +.|++-+++.-|++.|...
T Consensus        27 ~kkR~liLTd~PrL~Yvdp~~~~----~KGeI~~~~~l~v~~-----------k~~-~~F~I~tp~RtY~l~d~~~   86 (104)
T PF14593_consen   27 AKKRQLILTDGPRLFYVDPKKMV----LKGEIPWSKELSVEV-----------KSF-KTFFIHTPKRTYYLEDPEG   86 (104)
T ss_dssp             EEEEEEEEETTTEEEEEETTTTE----EEEEE--STT-EEEE-----------CSS-SEEEEEETTEEEEEE-TTS
T ss_pred             EEEEEEEEccCCEEEEEECCCCe----ECcEEecCCceEEEE-----------ccC-CEEEEECCCcEEEEECCCC
Confidence            79999999988 77776655443    359999996543221           111 2678888888888888654

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=96.93  E-value=0.0046  Score=40.08  Aligned_cols=72  Identities=14%  Similarity=0.166  Sum_probs=44.8

Q ss_pred             eEEEEEEeCCEEEEEeCC---CCc-cCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDP---KAE-ESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAI  138 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~---~~~-~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al  138 (160)
                      |.|-|-|=++-|.|-+-.   ... ..=.-.-.|+|.+.. +...      .|.+....+++|.|.|.|..|+.+|+.+|
T Consensus        18 K~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~-~~~~------~~~~~~~~~KSf~~~asS~~Er~eW~~hI   90 (96)
T cd01228          18 KLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLS-FPSE------PFRIHNKNGKSYTFLLSSDYERSEWRESI   90 (96)
T ss_pred             cceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHhe-ecch------hhhccccCCceEEEEecCHHHHHHHHHHH
Confidence            445555656656554321   111 000113578888876 3333      25554434689999999999999999999


Q ss_pred             HHH
Q psy8929         139 KRT  141 (160)
Q Consensus       139 ~~~  141 (160)
                      ++.
T Consensus        91 ~~~   93 (96)
T cd01228          91 QKL   93 (96)
T ss_pred             HHH
Confidence            874

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=96.74  E-value=0.036  Score=38.41  Aligned_cols=80  Identities=16%  Similarity=0.259  Sum_probs=52.9

Q ss_pred             eEEEEEEeCCEEEEEeCCCCccC------CccceeEEcCCceeeeecCCCCCceEEEEeCCC-cEEEEEcCCHHHHHHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEES------GVLDGVVALNNVTSLSEVPVARNFGFQITTWDS-KRTILSAVTAGIRNNWM  135 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~~------~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~-r~~~l~a~s~~e~~~Wi  135 (160)
                      +.|.+-|=+..+.+.+-..+...      =.-+..|.++... +.+...+.+..|+|-+.+. .+|.|+|.|++..+.|+
T Consensus        30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lg-lte~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv  108 (133)
T cd01227          30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVG-ITENVKGDTKKFEIWYNAREEVYILQAPTPEIKAAWV  108 (133)
T ss_pred             ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeeccc-ccccCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHHH
Confidence            35666777777777764422110      0113556666655 3333334578899986432 59999999999999999


Q ss_pred             HHHHHHhc
Q psy8929         136 SAIKRTAA  143 (160)
Q Consensus       136 ~al~~~~~  143 (160)
                      ..|++.+.
T Consensus       109 ~~I~~iL~  116 (133)
T cd01227         109 NEIRKVLT  116 (133)
T ss_pred             HHHHHHHH
Confidence            99999765

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=96.57  E-value=0.014  Score=38.47  Aligned_cols=41  Identities=12%  Similarity=0.127  Sum_probs=28.4

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCc--ccCCcccceeecccce
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKA--EESGVLDGVVALNNVT   44 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~--~~~~~l~g~i~l~~~~   44 (160)
                      +.++||.|||+|-++.|.|++....  ...-.+.+.|+|+.+.
T Consensus        14 ~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~   56 (101)
T cd01219          14 TTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQ   56 (101)
T ss_pred             CCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEE
Confidence            3578999999999999999985321  1111234778888754

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1090|consensus

Probab=96.47  E-value=0.0013  Score=58.37  Aligned_cols=42  Identities=33%  Similarity=0.646  Sum_probs=35.7

Q ss_pred             CCCCceEEEEEEe--CCeEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           4 KKHTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         4 ~~~~Wkkrwfvl~--~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      +-|-||-|||||.  .+.|+||.+..++++   .|.|||..+..+..
T Consensus      1646 ~lK~Wk~RwFVLd~~khqlrYYd~~edt~p---kG~IdLaevesv~~ 1689 (1732)
T KOG1090|consen 1646 KLKLWKPRWFVLDPDKHQLRYYDDFEDTKP---KGCIDLAEVESVAL 1689 (1732)
T ss_pred             hhcccccceeEecCCccceeeecccccccc---cchhhhhhhhhhcc
Confidence            3477999999997  699999999988887   89999998776554

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=96.38  E-value=0.0016  Score=42.88  Aligned_cols=16  Identities=38%  Similarity=0.642  Sum_probs=13.1

Q ss_pred             CCCCceEEEEEEeCCe
Q psy8929           4 KKHTWTKHWFVLRGCS   19 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~   19 (160)
                      ..|+||||||||++=+
T Consensus        15 ~~KkWKKRwFvL~qvs   30 (117)
T cd01234          15 VWKKWKKRFFVLVQVS   30 (117)
T ss_pred             hhhhhheeEEEEEchh
Confidence            3578999999999744

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=96.20  E-value=0.016  Score=38.65  Aligned_cols=38  Identities=21%  Similarity=0.560  Sum_probs=30.5

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN   42 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~   42 (160)
                      ++.|+|+|.||.+..|+.|..+.+.....+..++|+..
T Consensus        17 k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~   54 (112)
T cd01242          17 KPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDK   54 (112)
T ss_pred             cCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccc
Confidence            56899999999999999999887655444456778765

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4424|consensus

Probab=96.09  E-value=0.012  Score=49.62  Aligned_cols=85  Identities=18%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             eeeeeceEEEEEEeCCEEEEEeCCCCccCC---ccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          57 FQITTWTKHWFVLRGCSLLYYRDPKAEESG---VLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~---~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ....+-..||++|=...|.|.+-..- .++   .....+++.++...+......++.|.+..++ |...|.|.|++|..+
T Consensus       283 ~k~~~~qeRylfLFNd~~lyc~~r~~-~~~~k~~~r~~~s~~~~~v~~~~~~~~~~tF~~~G~~-r~vel~a~t~~ek~e  360 (623)
T KOG4424|consen  283 AKNGTTQERYLFLFNDILLYCKPRKR-LPGSKYEVRARCSISHMQVQEDDNEELPHTFILTGKK-RGVELQARTEQEKKE  360 (623)
T ss_pred             ccCCCcceeEEEEehhHHHhhhhhhh-cccceeccceeeccCcchhcccccccCCceEEEeccc-ceEEeecCchhhHHH
Confidence            34466788999998887777664331 110   0134455555553333333568999999875 899999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||++|+.+|.
T Consensus       361 Wv~~I~~~Id  370 (623)
T KOG4424|consen  361 WVQAIQDAID  370 (623)
T ss_pred             HHHHHHHHHH
Confidence            9999999987

>KOG3549|consensus

Probab=96.06  E-value=0.012  Score=46.90  Aligned_cols=79  Identities=9%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCcee-----------eee--cCCCCCceEEEEeCCCcEEEEEc
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS-----------LSE--VPVARNFGFQITTWDSKRTILSA  125 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~-----------v~~--~~~~~~~~F~i~t~~~r~~~l~a  125 (160)
                      ...++.||..|+|.++|.|..+.-+.       .+...+..           +..  ..+.|++||.|....+...||+.
T Consensus       297 ~q~y~P~FLaLkG~~~y~F~tPPv~t-------~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~CF~~qs~~ge~~yfsV  369 (505)
T KOG3549|consen  297 WQSYKPRFLALKGTEVYLFETPPVNT-------ADWSRAEVTYKVYETMFKIVKDSDTVDSRQHCFLLQSSGGEPRYFSV  369 (505)
T ss_pred             ccccCceeEEecCcEEEEEcCCCcch-------hhhhhhhhhHHHHHHHHHHhccccccccccceEEEEcCCCCceEEEE
Confidence            45678999999999999999775432       22222211           111  12268999999998889999999


Q ss_pred             CCHHHHHHHHHHHHHHhcc
Q psy8929         126 VTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       126 ~s~~e~~~Wi~al~~~~~~  144 (160)
                      +...|...|-++.+.|+-.
T Consensus       370 El~seLa~wE~sfq~Atf~  388 (505)
T KOG3549|consen  370 ELRSELARWENSFQAATFT  388 (505)
T ss_pred             ehhhHHHHHHHHHhhHHhH
Confidence            9999999999999987753

>PF15411 PH_10: Pleckstrin homology domain

Probab=96.04  E-value=0.099  Score=35.41  Aligned_cols=79  Identities=19%  Similarity=0.188  Sum_probs=55.9

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCc----------------cCCccceeEEcCCceeeeecCCCCCceEEEEe---CCCcE
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAE----------------ESGVLDGVVALNNVTSLSEVPVARNFGFQITT---WDSKR  120 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~----------------~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t---~~~r~  120 (160)
                      ..|+...+-|=...|..++.....                .+-.+.|.|.+..++.|........+.++|.-   ++-..
T Consensus        19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~~~L~i~w~~d~e~~~   98 (116)
T PF15411_consen   19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGSYSLQISWKGDPELEN   98 (116)
T ss_pred             CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCceEEEEEEcCCCCCce
Confidence            457777776766666666643331                11244688888888877766545567888875   33469


Q ss_pred             EEEEcCCHHHHHHHHHHH
Q psy8929         121 TILSAVTAGIRNNWMSAI  138 (160)
Q Consensus       121 ~~l~a~s~~e~~~Wi~al  138 (160)
                      |.|...++++++.|-.+|
T Consensus        99 F~lrf~nee~l~~W~~~L  116 (116)
T PF15411_consen   99 FTLRFRNEEQLEQWRSAL  116 (116)
T ss_pred             EEEEeCCHHHHHHHHhhC
Confidence            999999999999998875

>KOG4236|consensus

Probab=96.03  E-value=0.012  Score=49.73  Aligned_cols=76  Identities=14%  Similarity=0.264  Sum_probs=61.5

Q ss_pred             eEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-------CCCceEEEEeCCCcEEEEEcCC--------
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARNFGFQITTWDSKRTILSAVT--------  127 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-------~~~~~F~i~t~~~r~~~l~a~s--------  127 (160)
                      ++.|..|...++..|.++..+..   -..|+|+.+..|+....       ..++||+|.|..  +.||..++        
T Consensus       430 krHYWrldsk~itlfqn~s~~ry---YkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~--~vyfVge~p~~~~~~~  504 (888)
T KOG4236|consen  430 KRHYWRLDSKCITLFQNESTNRY---YKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT--TVYFVGENPSSTPGGE  504 (888)
T ss_pred             hhhhheeccceeEeeecCCCcee---EEeecHHHhheeeccCCcccCCCCCCCceEEEEeee--EEEEecCCCCCCcccc
Confidence            45677899999999999988665   67899999988876542       468999999964  77777887        


Q ss_pred             ----HHHHHHHHHHHHHHhc
Q psy8929         128 ----AGIRNNWMSAIKRTAA  143 (160)
Q Consensus       128 ----~~e~~~Wi~al~~~~~  143 (160)
                          .+.+..|-.||+.++.
T Consensus       505 ~g~g~d~a~~w~~ai~~alM  524 (888)
T KOG4236|consen  505 SGVGLDAAQGWETAIQQALM  524 (888)
T ss_pred             ccccchhhccCchhhhhccc
Confidence                5669999999999875

>KOG3543|consensus

Probab=96.00  E-value=0.0027  Score=54.10  Aligned_cols=80  Identities=24%  Similarity=0.376  Sum_probs=57.0

Q ss_pred             eeeceEEEEEEeCCEEE-----EEeCCCCccCCccceeEEcCCceeeeecCC-----CCCceEEEEeCCCcEEEEEcCCH
Q psy8929          59 ITTWTKHWFVLRGCSLL-----YYRDPKAEESGVLDGVVALNNVTSLSEVPV-----ARNFGFQITTWDSKRTILSAVTA  128 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~-----yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-----~~~~~F~i~t~~~r~~~l~a~s~  128 (160)
                      .+.||+|||||-.-+-|     -|...+. +|   ...|.|.+.+ |.-.++     +.++-|..+-. |-+..|..+++
T Consensus       478 wkrwkkrffvlvqvsqytfamcsyrekka-ep---qel~qldgyt-vdytdp~pglqgg~~ffnavke-gdtvifasdde  551 (1218)
T KOG3543|consen  478 WKRWKKRFFVLVQVSQYTFAMCSYREKKA-EP---QELIQLDGYT-VDYTDPSPGLQGGKHFFNAVKE-GDTVIFASDDE  551 (1218)
T ss_pred             HHHhHhhEEEEEEhhhhhhHhhhhhhccc-Ch---HHHhhccCee-eccCCCCCccccchHHHHHhcc-CceEEeccCch
Confidence            57899999999764433     3444333 33   5778999998 444332     33445555553 56999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q psy8929         129 GIRNNWMSAIKRTAAM  144 (160)
Q Consensus       129 ~e~~~Wi~al~~~~~~  144 (160)
                      +|+.-|++|+-.+.+.
T Consensus       552 qdr~lwvqamyratgq  567 (1218)
T KOG3543|consen  552 QDRHLWVQAMYRATGQ  567 (1218)
T ss_pred             hhhhHHHHHHHHhhCC
Confidence            9999999999998773

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=95.95  E-value=0.0047  Score=41.95  Aligned_cols=75  Identities=19%  Similarity=0.296  Sum_probs=37.4

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCccc-----------CCcccceeecccceeecccccccceeeeeeeceEEEEEEeCC
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEE-----------SGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGC   72 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~-----------~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~   72 (160)
                      ..+.|+..|+||+++.|+.|++.....           ...+.+.|+|..+.... ..+..|+...+   +   +.+.++
T Consensus        22 ~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~-a~dY~Kr~~VF---r---L~~~dg   94 (119)
T PF15410_consen   22 SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEI-ASDYTKRKNVF---R---LRTADG   94 (119)
T ss_dssp             S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEE-ETTBTTCSSEE---E---EE-TTS
T ss_pred             CCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEe-CcccccCCeEE---E---EEeCCC
Confidence            357899999999999999999943211           11234568888766544 33333322211   0   134467


Q ss_pred             EEEEEeCCCCccC
Q psy8929          73 SLLYYRDPKAEES   85 (160)
Q Consensus        73 ~L~yyk~~~~~~~   85 (160)
                      .-++|...+..+.
T Consensus        95 ~e~Lfqa~~~~~m  107 (119)
T PF15410_consen   95 SEYLFQASDEEEM  107 (119)
T ss_dssp             -EEEEE-SSHHHH
T ss_pred             CEEEEECCCHHHH
Confidence            7777776665544

>KOG1738|consensus

Probab=95.91  E-value=0.0018  Score=54.81  Aligned_cols=38  Identities=32%  Similarity=0.636  Sum_probs=33.2

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      +..|+|-||||+|+.|++|++...+.+   .++|.|.....
T Consensus       578 ~~kW~k~~~~l~~~~l~~y~n~~~~~~---e~~i~l~~~~i  615 (638)
T KOG1738|consen  578 QEKWRKIWMVLNDDPLLNYRNHRVRAA---ESVIKLPLFTI  615 (638)
T ss_pred             HHHhhhheeeecCchhhhhhhhhhhch---hheeeccchhh
Confidence            346999999999999999999999888   89998887543

>KOG1739|consensus

Probab=95.59  E-value=0.0041  Score=51.27  Aligned_cols=66  Identities=20%  Similarity=0.358  Sum_probs=45.5

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      -+.|+-|||||+++.|.||++..++.-|.. |.|-|+.........           --.||++-.+....|+.+...
T Consensus        37 i~gwqdRyv~lk~g~Lsyykse~E~~hGcR-gsi~l~ka~i~ahEf-----------De~rfdIsvn~nv~~lra~~~  102 (611)
T KOG1739|consen   37 IHGWQDRYVVLKNGALSYYKSEDETEHGCR-GSICLSKAVITAHEF-----------DECRFDISVNDNVWYLRAQDP  102 (611)
T ss_pred             cccccceEEEEcccchhhhhhhhhhhcccc-eeeEeccCCcccccc-----------hhheeeeEeccceeeehhcCc
Confidence            467999999999999999999988776664 899888754321111           113555655666666665544

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=95.34  E-value=0.054  Score=36.74  Aligned_cols=39  Identities=21%  Similarity=0.390  Sum_probs=27.9

Q ss_pred             CCCCCceEEEEEEeCCeEEEeeCCCcccCC---cccceeecc
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESG---VLDGVVALN   41 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~---~l~g~i~l~   41 (160)
                      +.++.|+|+|.||.+..|+.|..+.+....   ...-+||+.
T Consensus        15 ~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlr   56 (122)
T cd01243          15 GVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMR   56 (122)
T ss_pred             CcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcC
Confidence            346799999999999999999977654331   122355663

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3751|consensus

Probab=95.31  E-value=0.013  Score=48.87  Aligned_cols=31  Identities=39%  Similarity=0.714  Sum_probs=24.8

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcc
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVL   34 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l   34 (160)
                      -.|.|||.+||||...|||+......+...|
T Consensus       329 gkKsWKk~yf~LR~SGLYys~K~tsk~~r~L  359 (622)
T KOG3751|consen  329 GKKSWKKHYFVLRRSGLYYSTKGTSKEPRHL  359 (622)
T ss_pred             ccccceeEEEEEecCcceEccCCCCCCchhh
Confidence            3788999999999999999977665554333

>KOG3727|consensus

Probab=95.20  E-value=0.0019  Score=53.97  Aligned_cols=82  Identities=11%  Similarity=0.148  Sum_probs=54.3

Q ss_pred             eeeeeceEEEEEEeC----CEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCc-eEEE--EeCCCcEEEEEcCCH
Q psy8929          57 FQITTWTKHWFVLRG----CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNF-GFQI--TTWDSKRTILSAVTA  128 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~----~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~-~F~i--~t~~~r~~~l~a~s~  128 (160)
                      +..+..++.||...+    ..+.||++.  ..|   .+.|.+.+|.....++. +.++ -|-|  .-+..-.+||.|+++
T Consensus       370 ~~~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap---~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E  444 (664)
T KOG3727|consen  370 LTLKGYKRYFFTFRDLHLSLYKSSEDSR--GAP---AISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNE  444 (664)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhhHhhhc--CCC---CCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCH
Confidence            345666666665554    455555555  233   58899999986555544 2222 2333  334345899999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy8929         129 GIRNNWMSAIKRTAA  143 (160)
Q Consensus       129 ~e~~~Wi~al~~~~~  143 (160)
                      +....||.|.+-|..
T Consensus       445 ~QYA~WMAaCrLASK  459 (664)
T KOG3727|consen  445 QQYARWMAACRLASK  459 (664)
T ss_pred             HHHHHHHHHhhHhhc
Confidence            999999999998766

>KOG0705|consensus

Probab=94.79  E-value=0.023  Score=48.01  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=32.2

Q ss_pred             ceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         109 FGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       109 ~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      ++|.|+...+.++.|.|.+-+|++.||+||+.-|-
T Consensus       446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIl  480 (749)
T KOG0705|consen  446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQIL  480 (749)
T ss_pred             ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHH
Confidence            59999988889999999999999999999998765

>KOG1451|consensus

Probab=94.72  E-value=0.055  Score=45.95  Aligned_cols=81  Identities=15%  Similarity=0.290  Sum_probs=52.5

Q ss_pred             eeeceEEEEEEeCCE--EEEE--eCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeCCC-cEEEEEcCCHHHHH
Q psy8929          59 ITTWTKHWFVLRGCS--LLYY--RDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDS-KRTILSAVTAGIRN  132 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~--L~yy--k~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~-r~~~l~a~s~~e~~  132 (160)
                      .+.|-+.||+.....  +..-  ........| ...++.|..|.. ...+. .+.+||.|.+.+. -+..++|-+++++.
T Consensus       280 g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g-~~~~~~lKsC~R-RktdSIdKRFCFDve~~erpgviTmQALSE~drr  357 (812)
T KOG1451|consen  280 GKSWVKYYCVYSRETKIFTMVPANQKTGTKMG-QTATFKLKSCSR-RKTDSIDKRFCFDVEVEERPGVITMQALSEKDRR  357 (812)
T ss_pred             cchhhhheeEeecccceEEEeecccCCCCcCC-CcceEEehhhcc-CcccccccceeeeeeecccCCeeehHhhhhhHHH
Confidence            468999999987632  2221  111111211 134466666652 22222 6789999987541 38999999999999


Q ss_pred             HHHHHHHHH
Q psy8929         133 NWMSAIKRT  141 (160)
Q Consensus       133 ~Wi~al~~~  141 (160)
                      .||.|+--+
T Consensus       358 lWmeAMDG~  366 (812)
T KOG1451|consen  358 LWMEAMDGA  366 (812)
T ss_pred             HHHHHhcCC
Confidence            999999765

>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain

Probab=94.71  E-value=0.4  Score=33.57  Aligned_cols=78  Identities=17%  Similarity=0.344  Sum_probs=51.0

Q ss_pred             EEEEEeCCEEEEEeCCCCccCCc----------------cceeEEcCCceeeeecCC---CCCceEEEEeCC-------C
Q psy8929          65 HWFVLRGCSLLYYRDPKAEESGV----------------LDGVVALNNVTSLSEVPV---ARNFGFQITTWD-------S  118 (160)
Q Consensus        65 rwfvL~~~~L~yyk~~~~~~~~~----------------~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~-------~  118 (160)
                      -=||++...+..|++........                .+-.|++.... |.....   ...+.++|++..       .
T Consensus        52 ~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQ-VR~~n~ad~e~~~vwEliH~kSe~egRpE  130 (160)
T cd01255          52 MCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQ-VRASSAADMESNFLWELIHLKSELEGRPE  130 (160)
T ss_pred             EEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeee-eecCCCcCcccceEEEEEeecccccCCCc
Confidence            45788888888888765532210                01134444443 333222   345788887421       2


Q ss_pred             cEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         119 KRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       119 r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      ++|.||+.+++.++.-|..|++.+.
T Consensus       131 ~vfqLCcS~~E~k~~flK~Irsilr  155 (160)
T cd01255         131 KVFVLCCSTAESRNAFLKTIRSILR  155 (160)
T ss_pred             ceEEEecCCHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999775

TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.

>KOG4424|consensus

Probab=94.65  E-value=0.061  Score=45.46  Aligned_cols=82  Identities=15%  Similarity=0.139  Sum_probs=62.8

Q ss_pred             eeeeceEEEEEEe---CCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          58 QITTWTKHWFVLR---GCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        58 ~~~~WkkrwfvL~---~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      ....|..-|+++-   +-.++.|..+++...   ...|+|.++..-.+-..   ...++|.++.. ...++|.|+|++-.
T Consensus       509 ~~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a---~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s-~~~~~~~a~~~q~q  584 (623)
T KOG4424|consen  509 AGKTGILAWSVVPKSDPLVDYSYGSPQDVRA---QATIPLPGVEVTIPEFVRREDLFHVFKLVQS-HLSWHLAADDEQLQ  584 (623)
T ss_pred             cCccceeeeeeccCCCCccccccCCcccccc---ccccccCccccCCCcccccchhcchhhhhhh-cceeeeccCCHHHH
Confidence            5578999999874   467888988888555   78899999884222111   34466667665 47999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8929         132 NNWMSAIKRTAA  143 (160)
Q Consensus       132 ~~Wi~al~~~~~  143 (160)
                      +.|++.|..|..
T Consensus       585 q~wl~~l~~A~~  596 (623)
T KOG4424|consen  585 QRWLEVLLLAVS  596 (623)
T ss_pred             HHHHHHHHhhhc
Confidence            999999999876

>KOG2070|consensus

Probab=94.55  E-value=0.1  Score=43.46  Aligned_cols=74  Identities=12%  Similarity=0.238  Sum_probs=55.6

Q ss_pred             eEEEEEEeCCEEEEEeCCCC---ccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDPKA---EESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWMSA  137 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~---~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~a  137 (160)
                      +.|||+|-...|.++.-...   .-.   .|.++++|.. |...++  ...+.|+|..+.-......+..+.+..+|+.+
T Consensus       326 ~dRy~~LF~~~llflsvs~rMs~fIy---egKlp~tG~i-V~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~  401 (661)
T KOG2070|consen  326 KDRYLLLFPNVLLFLSVSPRMSGFIY---EGKLPTTGMI-VTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEH  401 (661)
T ss_pred             hhheeeeccceeeeeEeccccchhhh---ccccccceeE-EeehhhhhcccccccccccchhheeeccCChHHHHHHHHH
Confidence            47999999988887765443   222   4788888887 555443  46788999755444677889999999999999


Q ss_pred             HHH
Q psy8929         138 IKR  140 (160)
Q Consensus       138 l~~  140 (160)
                      ++.
T Consensus       402 ln~  404 (661)
T KOG2070|consen  402 LNK  404 (661)
T ss_pred             hhh
Confidence            996

>PLN02866 phospholipase D

Probab=93.89  E-value=0.061  Score=48.62  Aligned_cols=26  Identities=31%  Similarity=0.583  Sum_probs=22.6

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccC
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEES   31 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~   31 (160)
                      -+|.||||||++++|+|..++.+...
T Consensus       216 ~~w~k~w~v~k~~~l~~~~~p~~~~~  241 (1068)
T PLN02866        216 DNWQKVWAVLKPGFLALLEDPFDAKP  241 (1068)
T ss_pred             CchheeEEEEeccEEEEEecCCCCce
Confidence            47999999999999999988876554

>KOG0592|consensus

Probab=93.81  E-value=0.31  Score=41.28  Aligned_cols=71  Identities=21%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             ceEEEEEEeC-CEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy8929          62 WTKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR  140 (160)
Q Consensus        62 WkkrwfvL~~-~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~  140 (160)
                      -++|.|+|+. ..|.|+...+. .   ..|.|++..+..++..   ....|.|.||+ ++|+|- +-+.....|..+|.+
T Consensus       465 ~rkr~lllTn~~rll~~~~~~~-~---lk~eip~~~~~~~e~~---n~~~~~i~TP~-k~~~l~-d~~~~as~w~~ai~~  535 (604)
T KOG0592|consen  465 ARKRMLLLTNGPRLLYVDPQNL-V---LKGEIPWSPDLRVELK---NSSTFFIHTPN-KVYYLE-DPEQRASVWCKAIET  535 (604)
T ss_pred             hceeEEEecCCCeEEEEecccc-e---eccccccCcccceeec---cCcceEEECCc-cceecc-CcccchhHHHHhhhh
Confidence            3568888886 56666663333 2   2688998886644443   45689999997 899884 456778999999999


Q ss_pred             H
Q psy8929         141 T  141 (160)
Q Consensus       141 ~  141 (160)
                      .
T Consensus       536 ~  536 (604)
T KOG0592|consen  536 V  536 (604)
T ss_pred             h
Confidence            7

>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family

Probab=93.24  E-value=0.019  Score=32.60  Aligned_cols=22  Identities=32%  Similarity=0.750  Sum_probs=19.6

Q ss_pred             CCCCCceEEEEEEeCCeEEEee
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYR   24 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~   24 (160)
                      .+.+.|.|+|..+.|.+|.-|+
T Consensus        25 ekVr~wEKKWVtv~dtslriyK   46 (52)
T PF04714_consen   25 EKVRKWEKKWVTVGDTSLRIYK   46 (52)
T ss_pred             HHHHHHhhceEEeccceEEEEE
Confidence            4567899999999999999986

The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=93.14  E-value=0.51  Score=30.91  Aligned_cols=45  Identities=18%  Similarity=0.222  Sum_probs=28.6

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP   50 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~   50 (160)
                      ...|+|+||.+.|--|++.+.+.+...-...|.|+|.++. +.+.+
T Consensus        14 k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~   58 (99)
T cd01220          14 KGLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEESE   58 (99)
T ss_pred             CCCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-Eeecc
Confidence            4578888888888766666655433211235899999864 44433

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1737|consensus

Probab=92.99  E-value=0.053  Score=47.74  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSA  137 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~a  137 (160)
                      ..+.|.+|||+|.++.|.||++...... ...|.|++.... +...   ....+.+.......+++.+.+..+...|+.+
T Consensus        89 ~~~~~~~r~f~l~~g~ls~~~~~~~~~~-~~~~~~~~~~a~-i~~~---~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~  163 (799)
T KOG1737|consen   89 YSKGPSSRWFVLSGGLLSYYFDNSFSKT-TCGGGINLVTAW-IQNG---ERMDICSVDGSCQIYLVELSKKLQRQGWLHA  163 (799)
T ss_pred             ccCCcccceEEecCcceeeeccCCcccc-CCCCcccccccc-cccC---CCcccchhhcccchhhhhhhHHHhhcchhhh
Confidence            5688999999999999999998876433 114566664443 2221   2222333322236788999999999999999


Q ss_pred             HHHH
Q psy8929         138 IKRT  141 (160)
Q Consensus       138 l~~~  141 (160)
                      ++.+
T Consensus       164 ~~l~  167 (799)
T KOG1737|consen  164 LELA  167 (799)
T ss_pred             hhhc
Confidence            9886

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=92.97  E-value=0.2  Score=34.86  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=24.5

Q ss_pred             CCceEEEEeCC--CcEEEEEcCCHHHHHHHHHHHHHH
Q psy8929         107 RNFGFQITTWD--SKRTILSAVTAGIRNNWMSAIKRT  141 (160)
Q Consensus       107 ~~~~F~i~t~~--~r~~~l~a~s~~e~~~Wi~al~~~  141 (160)
                      ..|.|.|..-+  +..|.|.|+|+.++++|+++|.++
T Consensus        98 ~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   98 SLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             SEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             CccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence            34667776543  246799999999999999999874

>KOG0517|consensus

Probab=92.06  E-value=0.0034  Score=58.72  Aligned_cols=86  Identities=16%  Similarity=0.285  Sum_probs=61.4

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCC---ccceeEEcCCcee-eeecCC--CCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESG---VLDGVVALNNVTS-LSEVPV--ARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~---~~~g~I~L~~~~~-v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      ....|..-||++..+.|.+|+|.+....+   ...|...|.-... |....+  .++++|.+..++|..|.|.|.++++|
T Consensus      2319 ~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~~l~~~~gae~llq~k~ee~m 2398 (2473)
T KOG0517|consen 2319 SNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVFLLQLPPGAEHLLQAKDEEEM 2398 (2473)
T ss_pred             hcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhhhhcCCchHHHHHhhccHHHH
Confidence            35779999999999999999998764431   1122222221111 111111  57899999998899999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8929         132 NNWMSAIKRTAA  143 (160)
Q Consensus       132 ~~Wi~al~~~~~  143 (160)
                      +.|+.++.....
T Consensus      2399 ~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2399 ESWLRALAVKRA 2410 (2473)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>KOG2059|consensus

Probab=90.34  E-value=0.18  Score=43.79  Aligned_cols=39  Identities=23%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      ++++|||||-|+++.|.|-+++....    .+.|+|+++..+.
T Consensus       583 ~~~FKKryf~LT~~~Ls~~Ksp~~q~----~~~Ipl~nI~avE  621 (800)
T KOG2059|consen  583 KKNFKKRYFRLTTEELSYAKSPGKQP----IYTIPLSNIRAVE  621 (800)
T ss_pred             hhhhhheEEEeccceeEEecCCccCc----ccceeHHHHHHHH
Confidence            47899999999999999999885432    4788888765444

>KOG1737|consensus

Probab=90.20  E-value=0.24  Score=43.80  Aligned_cols=38  Identities=32%  Similarity=0.484  Sum_probs=29.7

Q ss_pred             CCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecc
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALN   41 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~   41 (160)
                      +..+.|++|||||.++.|.||++........ .|.|++.
T Consensus        88 n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~-~~~~~~~  125 (799)
T KOG1737|consen   88 NYSKGPSSRWFVLSGGLLSYYFDNSFSKTTC-GGGINLV  125 (799)
T ss_pred             cccCCcccceEEecCcceeeeccCCccccCC-CCccccc
Confidence            4578899999999999999999887665533 3666654

>KOG1170|consensus

Probab=89.93  E-value=0.011  Score=51.71  Aligned_cols=80  Identities=10%  Similarity=0.082  Sum_probs=56.9

Q ss_pred             eeeceEEEEEEeCCE-EEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHH
Q psy8929          59 ITTWTKHWFVLRGCS-LLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSA  137 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~-L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~a  137 (160)
                      ...|+.|++.+++.. ++|.+......    --.+++......+..+...++.|.|+++- ++..+||++..||..||.+
T Consensus        15 ~Ea~k~r~~~~k~~~~~~vakTa~g~~----~~~~d~t~a~~~eSs~~n~~~sf~vi~~~-rk~r~~adn~ke~e~wi~~   89 (1099)
T KOG1170|consen   15 REAWKQSILRAKDRMPEKVAKTASGPL----FALLDLTSAHVAESSTNNPRPSFCVITPV-RKHRLCADNRKEMEKWINQ   89 (1099)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCcc----HHHHhcccccccccccCCCCCCeeEeccc-HHhhhhccchhHHHHhhcc
Confidence            346777777777765 44544443322    35566777664333344667899999985 8999999999999999999


Q ss_pred             HHHHhc
Q psy8929         138 IKRTAA  143 (160)
Q Consensus       138 l~~~~~  143 (160)
                      ++...+
T Consensus        90 ~kt~q~   95 (1099)
T KOG1170|consen   90 SKTPQH   95 (1099)
T ss_pred             ccchhh
Confidence            988654

>KOG3520|consensus

Probab=89.08  E-value=1.2  Score=41.00  Aligned_cols=54  Identities=24%  Similarity=0.332  Sum_probs=40.1

Q ss_pred             ceeEEcCCceeeeecCCCCCceEEEEeC--CCcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929          89 DGVVALNNVTSLSEVPVARNFGFQITTW--DSKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus        89 ~g~I~L~~~~~v~~~~~~~~~~F~i~t~--~~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      -.+|.|.... |..+....+--|-|.+.  +...|-|.|.|..|++.||+.|+.++.
T Consensus       667 spVisL~~li-vRevAtd~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~  722 (1167)
T KOG3520|consen  667 SPVISLQKLI-VREVATDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVA  722 (1167)
T ss_pred             CCceehHHHH-HHHHhccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence            3678888873 55554434445555554  236899999999999999999999887

>KOG1738|consensus

Probab=88.91  E-value=0.065  Score=45.68  Aligned_cols=39  Identities=33%  Similarity=0.644  Sum_probs=34.2

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeee
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE  102 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~  102 (160)
                      ..|++-||||.+..|+.|.++....+   .++|.|...+ |..
T Consensus       579 ~kW~k~~~~l~~~~l~~y~n~~~~~~---e~~i~l~~~~-i~~  617 (638)
T KOG1738|consen  579 EKWRKIWMVLNDDPLLNYRNHRVRAA---ESVIKLPLFT-ISV  617 (638)
T ss_pred             HHhhhheeeecCchhhhhhhhhhhch---hheeeccchh-hhh
Confidence            45999999999999999999999887   7999999888 443

>KOG1264|consensus

Probab=87.88  E-value=1.1  Score=39.85  Aligned_cols=55  Identities=15%  Similarity=0.216  Sum_probs=39.1

Q ss_pred             ceeEEcCCceeeeecCC--CCCceEEEE--eCCCcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929          89 DGVVALNNVTSLSEVPV--ARNFGFQIT--TWDSKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus        89 ~g~I~L~~~~~v~~~~~--~~~~~F~i~--t~~~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      .|..++..+..|.....  .+.+.|.|.  +-..-.|.|.|++.+|+.+|+++|+.+..
T Consensus       853 rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~  911 (1267)
T KOG1264|consen  853 RGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITW  911 (1267)
T ss_pred             hccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHH
Confidence            35666666664444332  456777775  22345899999999999999999999765

>KOG3551|consensus

Probab=87.87  E-value=1.1  Score=36.62  Aligned_cols=37  Identities=24%  Similarity=0.387  Sum_probs=33.3

Q ss_pred             CCceEEEEeCCCc-EEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         107 RNFGFQITTWDSK-RTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       107 ~~~~F~i~t~~~r-~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      .+.+|+|.+|+++ +..|.|.+..+.+.|..||..+++
T Consensus       235 EnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~  272 (506)
T KOG3551|consen  235 ENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVN  272 (506)
T ss_pred             ccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHh
Confidence            4568999999886 899999999999999999999876

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=87.85  E-value=1.6  Score=29.24  Aligned_cols=37  Identities=11%  Similarity=0.128  Sum_probs=32.3

Q ss_pred             CCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         107 RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       107 ~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                      ..+.|.|.|.. +..-|.++|..+.+.|++.|+.-+..
T Consensus        69 ~~~yfgL~T~~-G~vEfec~~~~~~k~W~~gI~~mL~~  105 (110)
T PF08458_consen   69 ERRYFGLKTAQ-GVVEFECDSQREYKRWVQGIQHMLSQ  105 (110)
T ss_pred             eEEEEEEEecC-cEEEEEeCChhhHHHHHHHHHHHHHH
Confidence            45789999985 79999999999999999999986653

>KOG3531|consensus

Probab=87.40  E-value=0.56  Score=41.60  Aligned_cols=55  Identities=18%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             ceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhcccC
Q psy8929          89 DGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSL  146 (160)
Q Consensus        89 ~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~  146 (160)
                      .|.|++. .+ ++.++.  +-+++|.|.+.. +..+.+|.+..+.+.|+..++.+|.+..
T Consensus       792 ~g~lP~~-l~-~en~en~~s~p~~~ti~~~q-k~i~vsast~~~sk~~~~~r~~~i~~~~  848 (1036)
T KOG3531|consen  792 NGDLPLT-LT-MENSENEWSVPHCFTISGAQ-KQIYVSASTRRESKKWEFDRRKAIDLAP  848 (1036)
T ss_pred             ccCCceE-ee-eecccccccCCceEEEeccc-eEEEEeccchhhhhhhhhccchhhhhcc
Confidence            5777777 33 555544  578999999875 7999999999999999999999987443

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=87.29  E-value=0.71  Score=30.85  Aligned_cols=24  Identities=21%  Similarity=0.789  Sum_probs=21.3

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKA   28 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~   28 (160)
                      .++||-|+++|+++.|+.|..+--
T Consensus        16 ~~~wrP~F~aL~~~dl~ly~s~P~   39 (108)
T cd01258          16 SQRWRPRFLALKGSEFLFFETPPL   39 (108)
T ss_pred             ccccceEEEEEcCCcEEEEeCCCC
Confidence            479999999999999999997743

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15404 PH_4: Pleckstrin homology domain

Probab=86.21  E-value=0.89  Score=33.33  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCHHHHHHHHHHHHHH
Q psy8929         118 SKRTILSAVTAGIRNNWMSAIKRT  141 (160)
Q Consensus       118 ~r~~~l~a~s~~e~~~Wi~al~~~  141 (160)
                      ++.+.|.|-|..|++.||-+|...
T Consensus       161 gks~VF~ARSRqERD~WV~~I~~E  184 (185)
T PF15404_consen  161 GKSMVFMARSRQERDLWVLAINTE  184 (185)
T ss_pred             CcEEEEEeccHHHHHHHHHHHHhc
Confidence            589999999999999999999754

>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E

Probab=85.66  E-value=5.6  Score=25.60  Aligned_cols=51  Identities=14%  Similarity=0.154  Sum_probs=37.3

Q ss_pred             eeEEcCCceeeeecCCC-CCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Q psy8929          90 GVVALNNVTSLSEVPVA-RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTA  142 (160)
Q Consensus        90 g~I~L~~~~~v~~~~~~-~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~  142 (160)
                      ..=+|.....|+..++. ....|.|...  ++|+..|.|.+|+...|..|-+..
T Consensus        37 ktW~L~eL~~I~~~~~~~~~~~F~l~~~--k~y~W~a~s~~Ek~~Fi~~L~k~~   88 (91)
T PF15277_consen   37 KTWDLDELKAIDGINPDKDTPEFDLTFD--KPYYWEASSAKEKNTFIRSLWKLY   88 (91)
T ss_dssp             EEEEGGG--EEEE-SSS--TTEEEEESS--SEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eEEehhhceeeeeecCCCCCcCEEEEEC--CCcEEEeCCHHHHHHHHHHHHHHh
Confidence            44667777777766542 3568999983  699999999999999999987754

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=85.08  E-value=5.7  Score=25.56  Aligned_cols=63  Identities=21%  Similarity=0.327  Sum_probs=42.2

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccc-ceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN-VTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~-~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      +--+|||=|+|++.-=.+|-|+.....   .|.|+.+. ...+.           .++- +.|+|-+++.-+|+.|...
T Consensus        12 glf~kkR~LiLTd~PrL~yvdp~~~~~---KgeIp~s~~~l~v~-----------~~~~-~~F~I~Tp~rty~leD~~~   75 (89)
T cd01262          12 GLFAKKRQLILTNGPRLIYVDPVKKVV---KGEIPWSDVELRVE-----------VKNS-SHFFVHTPNKVYSFEDPKG   75 (89)
T ss_pred             ccccceeeEEEecCceEEEEcCCcCeE---EeEecccccceEEE-----------EecC-ccEEEECCCceEEEECCCC
Confidence            445899999999765555566654333   79999987 32211           1111 5788889998888887653

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4095|consensus

Probab=85.07  E-value=0.29  Score=34.29  Aligned_cols=22  Identities=32%  Similarity=0.746  Sum_probs=20.3

Q ss_pred             CCCCCceEEEEEEeCCeEEEee
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYR   24 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~   24 (160)
                      .|++.|.|+|+.+.|.+|..|+
T Consensus        26 EKVRrWEKKwVtvgDTslRIyK   47 (165)
T KOG4095|consen   26 EKVRRWEKKWVTVGDTSLRIYK   47 (165)
T ss_pred             HHHHHHhhheEeecccceEEEE
Confidence            4678999999999999999997

>KOG0690|consensus

Probab=84.83  E-value=0.93  Score=36.56  Aligned_cols=23  Identities=30%  Similarity=0.610  Sum_probs=19.7

Q ss_pred             CCCceEEEEEEe-CCeEEEeeCCC
Q psy8929           5 KHTWTKHWFVLR-GCSLLYYRDPK   27 (160)
Q Consensus         5 ~~~Wkkrwfvl~-~~~L~yy~~~~   27 (160)
                      -+||+-|+|+|. |++|+-|+..-
T Consensus        28 IknWRpRYF~l~~DG~~~Gyr~kP   51 (516)
T KOG0690|consen   28 IKNWRPRYFLLFNDGTLLGYRSKP   51 (516)
T ss_pred             hhcccceEEEEeeCCceEeeccCC
Confidence            479999999997 89999998653

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=84.62  E-value=5.6  Score=25.95  Aligned_cols=67  Identities=9%  Similarity=0.163  Sum_probs=42.9

Q ss_pred             EEEeCCEEEEEeC---------------CCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          67 FVLRGCSLLYYRD---------------PKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        67 fvL~~~~L~yyk~---------------~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      +.|....+++..+               .....   ....+++.++..|..-.= -++.+++|-..++++|+|..++.++
T Consensus        21 l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~---~~~~w~~~~I~~v~~RRyllr~~AlEiF~~dg~s~f~~F~~~~~   97 (106)
T PF14844_consen   21 LIITKSSIYFIPNDNSSENKISSENPSISISKP---KSKRWPLSDIKEVHKRRYLLRDTALEIFFSDGRSYFFNFESKKE   97 (106)
T ss_dssp             EEE-SSEEEEEE--TTSHHHHCS-HHHHCC------TCEEEEGGGEEEEEEEEETTEEEEEEEEETTS-EEEEE-SSHHH
T ss_pred             EEEeCCEEEEEECCcccccccccccccccccCC---ceEEEEHHHhHHHHHHHhcCcceEEEEEEcCCcEEEEEcCCHHH
Confidence            4577777777665               11112   256788888776654210 3567899999999999999999999


Q ss_pred             HHHHHH
Q psy8929         131 RNNWMS  136 (160)
Q Consensus       131 ~~~Wi~  136 (160)
                      +++=++
T Consensus        98 R~~v~~  103 (106)
T PF14844_consen   98 RDEVYN  103 (106)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            986543

>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT)

Probab=82.88  E-value=8.3  Score=28.34  Aligned_cols=70  Identities=16%  Similarity=0.147  Sum_probs=48.4

Q ss_pred             ceEEEEEEeCCEEEEEe-----CCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHH
Q psy8929          62 WTKHWFVLRGCSLLYYR-----DPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWM  135 (160)
Q Consensus        62 WkkrwfvL~~~~L~yyk-----~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi  135 (160)
                      -..|.++|++..+|...     +......   ...|+|..++.|...+- ...-|.|..++.--+.|+++...|+-.=|
T Consensus        65 ~~~R~livT~~~iY~l~~~~~~~~~~~~~---kr~i~l~~I~~IsvS~~-~D~~~vihv~~~~D~il~~~~k~Elv~~L  139 (199)
T PF06017_consen   65 PQPRILIVTDKAIYLLDQRKVKDPKKYKL---KRRIPLSDITGISVSPL-SDNFFVIHVPGEGDLILESDFKTELVTIL  139 (199)
T ss_pred             ccceEEEEeCCeEEEEEEeecCCceeeEE---EeccCcccccEEEEccC-CCCEEEEEECCCCCEEEEeCcHHHHHHHH
Confidence            45799999999999985     3333332   67799999888776644 23445555455568889998886654433

Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex

>KOG4407|consensus

Probab=82.17  E-value=0.077  Score=48.87  Aligned_cols=91  Identities=19%  Similarity=0.216  Sum_probs=64.9

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCC-----------ccceeEEcCCcee-eeecCCCCCceEEEEeCCCcE
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESG-----------VLDGVVALNNVTS-LSEVPVARNFGFQITTWDSKR  120 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~-----------~~~g~I~L~~~~~-v~~~~~~~~~~F~i~t~~~r~  120 (160)
                      ++-|..+..|+.-|.+|.++.|+.|++..+....           ...-.+.|.+|.. |...+..+++.|++.+.+--.
T Consensus       940 k~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~ysetkrn~vfRLTt~d~ce 1019 (1973)
T KOG4407|consen  940 KATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQYSETKRNQVFRLTTNDLCE 1019 (1973)
T ss_pred             cccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhhhhhhhhhHHHhHHHHHHh
Confidence            3447788999999999999999999987762210           0012244444442 111122678899999877568


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         121 TILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       121 ~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      +.|.+++.++|-.|++.+++...
T Consensus      1020 ~lfqaeDrddmlgG~~ttq~St~ 1042 (1973)
T KOG4407|consen 1020 GLFQAEDRDDMLGGLSTTQSSTT 1042 (1973)
T ss_pred             HhhccCccccccchhhhhhhccc
Confidence            89999999999999999977554

>KOG3523|consensus

Probab=82.05  E-value=4.6  Score=34.87  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=27.3

Q ss_pred             CCCceEEEEeC---CC--cEEEEEcCCHHHHHHHHHHHH
Q psy8929         106 ARNFGFQITTW---DS--KRTILSAVTAGIRNNWMSAIK  139 (160)
Q Consensus       106 ~~~~~F~i~t~---~~--r~~~l~a~s~~e~~~Wi~al~  139 (160)
                      +.+|.|.+.--   ++  ..+.|.|+|+.|+..||.||.
T Consensus       553 ~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~  591 (695)
T KOG3523|consen  553 SRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALR  591 (695)
T ss_pred             cccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcC
Confidence            45688988721   12  489999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
1upq_A	123	Crystal Structure Of The Pleckstrin Homology (Ph) D		1e-04

>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain Of Pepp1 Length = 123

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 59  ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVV--ALNNVTSLSEVPVARNFGFQITTW 116
           +  W + WFVL G  L YY+D  + E  VL  V+  + N        P  R F F     
Sbjct: 25  LRLWKRRWFVLSGHCLFYYKD--SREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHP 82
Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
             +  +L+A T      W+ A+ R A+ +  DD   P S
Sbjct: 83  GMRTYVLAADTLEDLRGWLRALGR-ASRAEGDDYGQPRS 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	5e-16
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	3e-09
2dkp_A	128	Pleckstrin homology domain-containing family A mem	8e-16
2dkp_A	128	Pleckstrin homology domain-containing family A mem	1e-09
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	1e-15
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	2e-09
3cxb_B	112	Pleckstrin homology domain-containing family M mem	2e-15
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	5e-15
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	2e-10
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	3e-14
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	1e-08
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	6e-14
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	9e-09
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	7e-14
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	4e-11
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	9e-14
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	9e-08
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	2e-13
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	1e-07
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	5e-13
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	7e-10
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	1e-12
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	4e-07
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	1e-12
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	2e-05
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	1e-12
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	5e-07
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	4e-12
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	6e-07
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	7e-12
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	2e-07
2d9y_A	117	Pleckstrin homology domain-containing protein fami	9e-12
2d9y_A	117	Pleckstrin homology domain-containing protein fami	1e-07
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	1e-11
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	1e-07
2yry_A	122	Pleckstrin homology domain-containing family A mem	1e-11
2yry_A	122	Pleckstrin homology domain-containing family A mem	3e-07
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	1e-11
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	1e-06
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	2e-11
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	3e-11
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	4e-06
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	7e-11
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	9e-06
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	8e-11
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	1e-10
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	9e-06
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	1e-10
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	1e-10
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	4e-07
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	2e-10
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	2e-06
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	3e-10
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	6e-05
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	3e-10
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	4e-06
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	5e-10
2d9v_A	130	Pleckstrin homology domain-containing protein fami	5e-10
2d9v_A	130	Pleckstrin homology domain-containing protein fami	4e-05
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	6e-10
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	9e-10
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	6e-06
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	9e-10
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	5e-05
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	2e-09
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	7e-05
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	2e-09
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	2e-05
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	3e-09
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	2e-04
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	4e-09
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	4e-09
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	7e-05
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	5e-09
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	1e-05
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	1e-08
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	6e-04
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	1e-08
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	4e-08
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	7e-04
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	4e-08
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	3e-07
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	4e-08
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	3e-05
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	6e-08
1wi1_A	126	Calcium-dependent activator protein for secretion,	3e-07
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	3e-07
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	6e-07
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	8e-07
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	1e-06
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	2e-06
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	3e-06
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	5e-06
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	9e-05
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	9e-06
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	4e-04
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	7e-05
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	1e-04
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	4e-04
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	5e-04

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 68.6 bits (168), Expect = 5e-16
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 12/105 (11%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
                 + K W    G S+ YY + K        G++ L+ +   S V V  +  F++ T
Sbjct: 19  PQGKRMFQKRWVKFDGLSISYYNNEKEMY---SKGIIPLSAI---STVRVQGDNKFEVVT 72

Query: 116 WDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLL---DDKASPSSS 156
             ++RT +        RN+W+S +        L      + PSS 
Sbjct: 73  --TQRTFVFRVEKEEERNDWISILLNALKSQSLTSQSQASGPSSG 115

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 61
            K  + K W    G S+ YY + K        G++ L+ +   S V V  +  F++ T
Sbjct: 20 QGKRMFQKRWVKFDGLSISYYNNEKEMY---SKGIIPLSAI---STVRVQGDNKFEVVT 72

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 68.7 bits (168), Expect = 8e-16
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP---VARNFGFQ 112
              +  W K WFVL    L YYRD K E    + G + L +           + R + F+
Sbjct: 32  STGMKLWKKRWFVLSDLCLFYYRDEKEEG---ILGSILLPSFQIALLTSEDHINRKYAFK 88

Query: 113 ITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
               + +       T      WM A+   A +      + PSS
Sbjct: 89  AAHPNMRTYYFCTDTGKEMELWMKAMLDAALV----QTSGPSS 127

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 7   TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP---VARNFGFQITTWT 63
            W K WFVL    L YYRD K E    + G + L +           + R + F+     
Sbjct: 37  LWKKRWFVLSDLCLFYYRDEKEEG---ILGSILLPSFQIALLTSEDHINRKYAFKAAHPN 93

Query: 64  KHWFVLRGCS 73
              +     +
Sbjct: 94  MRTYYFCTDT 103

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 67.8 bits (166), Expect = 1e-15
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--RNFGFQI 113
           G +   WT+ WFVL+   + YY     ++     G + L+    +  +P    +   F +
Sbjct: 18  GHRRKNWTERWFVLKPNIISYYVSEDLKD---KKGDILLDENCCVESLPDKDGKKCLFLV 74

Query: 114 TTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
                 +T  +SA     +  W+ AI     + LL   +S  SS
Sbjct: 75  KC--FDKTFEISASDKKKKQEWIQAIHS--TIHLLKLGSSGPSS 114

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 2  LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--RNF 55
          + KK      WT+ WFVL+   + YY     ++     G + L+    +  +P    +  
Sbjct: 14 MMKKGHRRKNWTERWFVLKPNIISYYVSEDLKD---KKGDILLDENCCVESLPDKDGKKC 70

Query: 56 GFQITT 61
           F +  
Sbjct: 71 LFLVKC 76

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 67.1 bits (164), Expect = 2e-15
 Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 6/104 (5%)

Query: 54  NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFG 110
                   W   + VL    L  Y D            V +               R   
Sbjct: 12  TSYLGKEHWKTCFVVLSNGILYQYPDRTDVI---PLLSVNMGGEQCGGCRRANTTDRPHA 68

Query: 111 FQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPS 154
           FQ+   D     LSA +      WM  + +  +  ++    +PS
Sbjct: 69  FQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGVIPQGVAPS 112

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 68.9 bits (168), Expect = 5e-15
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 25/138 (18%)

Query: 7   TWTKHWFVLRGCSLLYYRDP-KAEESGVLD--GVVALNNVTSLSEVPVARNFGFQITTWT 63
           +W + W VL+  + L++R   +A + G L   G                 +       W 
Sbjct: 36  SWKRRWCVLKDETFLWFRSKQEALKQGWLHNNG---------------GGSSTLSRRNWK 80

Query: 64  KHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT-I 122
           K WFVLR   L+Y+ +   E+   L G V + +   + +    +  G  I    + RT  
Sbjct: 81  KRWFVLRQSKLMYFENDSEEK---LKGTVEVRSAKEIIDNT-NKENGIDIIM--ADRTFH 134

Query: 123 LSAVTAGIRNNWMSAIKR 140
           L A +    + W S + +
Sbjct: 135 LIAESPEDASQWFSVLSQ 152

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 27/156 (17%)

Query: 7   TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT----- 61
            W K WFVLR   L+Y+ +   E+   L G V + +   + +    +  G  I       
Sbjct: 78  NWKKRWFVLRQSKLMYFENDSEEK---LKGTVEVRSAKEIIDNT-NKENGIDIIMADRTF 133

Query: 62  ------------WTK--HWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV-PVA 106
                       W              +     +        G + +  + S+       
Sbjct: 134 HLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVGLIDSVCASDSPD 193

Query: 107 RNFGFQITTWDSKRTI-LSAVTAGIRNNWMSAIKRT 141
           R   F I T  + R +  +A T    ++W++ ++R+
Sbjct: 194 RPNSFVIIT--ANRVLHCNADTPEEMHHWITLLQRS 227

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 64.3 bits (157), Expect = 3e-14
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWDSK 119
           TW   WF L    L Y++D  + E      ++ L   +++       R   F +      
Sbjct: 33  TWKTRWFTLHRNELKYFKDQMSPE---PIRILDLTECSAVQFDYSQERVNCFCLVF--PF 87

Query: 120 RT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQ 159
           RT  L A T    + W+  ++    +S +  + +    T++
Sbjct: 88  RTFYLCAKTGVEADEWIKILRW--KLSQIRKQLNQGEGTIR 126

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%)

Query: 2  LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFG 56
          L K+     TW   WF L    L Y++D  + E      ++ L   +++       R   
Sbjct: 24 LTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPE---PIRILDLTECSAVQFDYSQERVNC 80

Query: 57 FQITT 61
          F +  
Sbjct: 81 FCLVF 85

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 63.6 bits (155), Expect = 6e-14
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP----VARNFGF 111
           G  +  W + +F L   ++ Y++    +E      V+ L  V  + E      + R+  F
Sbjct: 24  GAVMKNWKRRYFQLDENTIGYFKSELEKE---PLRVIPLKEVHKVQECKQSDIMMRDNLF 80

Query: 112 QITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
           +I T  + RT  + A +    ++W+ A+           +++ S 
Sbjct: 81  EIVT--TSRTFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASSE 123

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 49.8 bits (119), Expect = 9e-09
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 2  LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP----VAR 53
            K+      W + +F L   ++ Y++    +E      V+ L  V  + E      + R
Sbjct: 20 CVKQGAVMKNWKRRYFQLDENTIGYFKSELEKE---PLRVIPLKEVHKVQECKQSDIMMR 76

Query: 54 NFGFQITT 61
          +  F+I T
Sbjct: 77 DNLFEIVT 84

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 62.9 bits (153), Expect = 7e-14
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKR 120
            W   W  +R   L +Y+D    +       ++L     + +      + F+I     + 
Sbjct: 21  QWKSRWCSVRDNHLHFYQDRNRSKVAQ--QPLSLVGCEVVPDPSPDHLYSFRILHKGEEL 78

Query: 121 TILSAVTAGIRNNWMSAIKRTAA 143
             L A ++    +W+  +   + 
Sbjct: 79  AKLEAKSSEEMGHWLGLLLSESG 101

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 55.6 bits (134), Expect = 4e-11
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 2  LNKK--HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQI 59
          LN      W   W  +R   L +Y+D    +       ++L     + +      + F+I
Sbjct: 14 LNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQ--QPLSLVGCEVVPDPSPDHLYSFRI 71

Query: 60 TTWTKHWFVLRGCS 73
              +    L   S
Sbjct: 72 LHKGEELAKLEAKS 85

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 63.8 bits (155), Expect = 9e-14
 Identities = 16/114 (14%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 53  RNFGFQITTWTKHWFVLRGCS-----LLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR 107
                 + ++ + +F L         L +Y+D K   S    G + L++   + +    R
Sbjct: 31  SAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEK--ISKEPKGSIFLDSCMGVVQNNKVR 88

Query: 108 NFGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
            F F++     K + +L+A +      W++ + +   ++         +    +
Sbjct: 89  RFAFELKM-QDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDSHE 141

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 47.7 bits (113), Expect = 9e-08
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 7   TWTKHWFVLRGCS-----LLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 61
           ++ + +F L         L +Y+D K   S    G + L++   + +    R F F++  
Sbjct: 39  SFKRRFFHLIQLGDGSYNLNFYKDEK--ISKEPKGSIFLDSCMGVVQNNKVRRFAFELKM 96

Query: 62  WTKHWFVLRGCS 73
             K  ++L   S
Sbjct: 97  QDKSSYLLAADS 108

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQITTWD 117
            W + WFVL G  L YY+D + E    + G V L +          P  R F F      
Sbjct: 27  LWKRRWFVLSGHCLFYYKDSREES---VLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPG 83

Query: 118 SKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSST 157
            +  +L+A T      W+ A+ R A+ +  DD   P S  
Sbjct: 84  MRTYVLAADTLEDLRGWLRALGR-ASRAEGDDYGQPRSPA 122

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 7  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---SLSEVPVARNFGFQITTWT 63
           W + WFVL G  L YY+D + E    + G V L +          P  R F F      
Sbjct: 27 LWKRRWFVLSGHCLFYYKDSREES---VLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPG 83

Query: 64 KHWFVL 69
             +VL
Sbjct: 84 MRTYVL 89

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 60.8 bits (148), Expect = 5e-13
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP--VARNFGFQI 113
           G    TW   W VL    + +Y+           G++ L   T  S       R F F+I
Sbjct: 15  GSVFNTWKPMWVVLLEDGIEFYKKKSDNS---PKGMIPLKGSTLTSPCQDFGKRMFVFKI 71

Query: 114 TTWDSKRTILSAVTAGIRNNWMSAIKR 140
           TT   +     A     R+ W+  I +
Sbjct: 72  TTTKQQDHFFQAAFLEERDAWVRDINK 98

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 52.7 bits (127), Expect = 7e-10
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 2  LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP--VARNF 55
          L KK    +TW   W VL    + +Y+           G++ L   T  S       R F
Sbjct: 11 LVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS---PKGMIPLKGSTLTSPCQDFGKRMF 67

Query: 56 GFQITTWTKHWFVLRGCS 73
           F+ITT  +     +   
Sbjct: 68 VFKITTTKQQDHFFQAAF 85

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 59.8 bits (145), Expect = 1e-12
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 54  NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RNF 109
           +  F  + W K W V+      YY + K+++     G   +   +      +     +  
Sbjct: 15  DHSFFGSEWQKRWCVVSRGLFYYYANEKSKQ---PKGTFLIKGYSVRMAPHLRRDSKKES 71

Query: 110 GFQITTWDSKRT-ILSAVTAGIRNNWMSAIKR 140
            F++T+   +RT   +A +     +W+  I  
Sbjct: 72  CFELTS-QDRRTYEFTATSPAEARDWVDQISF 102

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 6  HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RNFGFQITT 61
            W K W V+      YY + K+++     G   +   +      +     +   F++T+
Sbjct: 21 SEWQKRWCVVSRGLFYYYANEKSKQ---PKGTFLIKGYSVRMAPHLRRDSKKESCFELTS 77

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 63.1 bits (152), Expect = 1e-12
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
           G   +TW + ++  +G +L+            +D    ++N + ++     R + FQIT+
Sbjct: 291 GLVSSTWDRQFYFTQGGNLMSQARGDVAGGLAMD----IDNCSVMAVDCEDRRYCFQITS 346

Query: 116 WDSKRTI-LSAVTAGIRNNWMSAIKRTAAMSLLDDK 150
           +D K++  L A +      W+  I   +    L + 
Sbjct: 347 FDGKKSSILQAESKKDHEEWICTINNISKQIYLSEN 382

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 5   KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTK 64
             TW + ++  +G +L+            +D    ++N + ++     R + FQIT++  
Sbjct: 294 SSTWDRQFYFTQGGNLMSQARGDVAGGLAMD----IDNCSVMAVDCEDRRYCFQITSFDG 349

Query: 65  H 65
            
Sbjct: 350 K 350

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 9/93 (9%)

Query: 53  RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RN 108
           ++  F    W K W  L      YY   K ++     G  A++         +     ++
Sbjct: 28  KDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---QKGEFAIDGYDVRMNNTLRKDGKKD 84

Query: 109 FGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKR 140
             F+I     KR    +A +      W+  +K 
Sbjct: 85  CCFEICA-PDKRIYQFTAASPKDAEEWVQQLKF 116

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 45.7 bits (108), Expect = 5e-07
 Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 7/69 (10%)

Query: 6   HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RNFGFQITT 61
             W K W  L      YY   K ++     G  A++         +     ++  F+I  
Sbjct: 35  FEWQKRWCALSKTVFYYYGSDKDKQ---QKGEFAIDGYDVRMNNTLRKDGKKDCCFEICA 91

Query: 62  WTKHWFVLR 70
             K  +   
Sbjct: 92  PDKRIYQFT 100

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 59.4 bits (143), Expect = 4e-12
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFG--FQI 113
                 +  +W  LRG +L +Y D K+         + + ++T L+E          F +
Sbjct: 28  RSGYREYEHYWTELRGTTLFFYTDKKSII---YVDKLDIVDLTCLTEQNSTEKNCAKFTL 84

Query: 114 TTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSL 146
                +   L          W   I     +S+
Sbjct: 85  VLPK-EEVQLKTENTESGEEWRGFILTVTELSV 116

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 2  LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFG- 56
          L  K      +  +W  LRG +L +Y D K+         + + ++T L+E         
Sbjct: 24 LLIKRSGYREYEHYWTELRGTTLFFYTDKKSII---YVDKLDIVDLTCLTEQNSTEKNCA 80

Query: 57 -FQITTWTKHWF 67
           F +    +   
Sbjct: 81 KFTLVLPKEEVQ 92

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 58.2 bits (141), Expect = 7e-12
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQ 112
              +  W + +FVLR   L YY+D +  +     G + L   T          A  F F+
Sbjct: 18  RSIVKNWQQRYFVLRAQQLYYYKDEEDTK---PQGCMYLPGCTIKEIATNPEEAGKFVFE 74

Query: 113 ITT------WDSKRT-ILSAVTAGIRNNWMSAIKRTAAMS 145
           I           + + +L A +      W+  ++R A   
Sbjct: 75  IIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG 114

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 2  LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARN 54
          L K+      W + +FVLR   L YY+D +  +     G + L   T          A  
Sbjct: 14 LKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTK---PQGCMYLPGCTIKEIATNPEEAGK 70

Query: 55 FGFQITT 61
          F F+I  
Sbjct: 71 FVFEIIP 77

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 57.8 bits (140), Expect = 9e-12
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWD 117
            W K WFVL    L YY+D K E    + G + L +    +  P    +R   F+     
Sbjct: 27  QWNKRWFVLVDRCLFYYKDEKEES---ILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAG 83

Query: 118 SKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
            +    SA +   +  W+ A+   A +     ++ PSS
Sbjct: 84  VRTYFFSAESPEEQEAWIQAMGEAARV-----QSGPSS 116

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQI 59
          +    W K WFVL    L YY+D K E    + G + L +    +  P    +R   F+ 
Sbjct: 23 SGVKQWNKRWFVLVDRCLFYYKDEKEES---ILGSIPLLSFRVAAVQPSDNISRKHTFKA 79

Query: 60 TTWTKHWFVLR 70
                 +   
Sbjct: 80 EHAGVRTYFFS 90

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT-SLSEVPVARNFGFQITTWDSK 119
            W   WFV++   L  Y   +            L   T +L +   + +  FQ+      
Sbjct: 23  PWKHLWFVIKNKVLYTYAASEDVA---ALESQPLLGFTVTLVKDENSESKVFQLLH-KGM 78

Query: 120 RT-ILSAVTAGIRNNWMSAIKRTAAMS 145
              +  A  A     W+ A +      
Sbjct: 79  VFYVFKADDAHSTQRWIDAFQEGTVSG 105

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 4  KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT-SLSEVPVARNFGFQITTW 62
           K  W   WFV++   L  Y   +            L   T +L +   + +  FQ+   
Sbjct: 20 SKKPWKHLWFVIKNKVLYTYAASEDVA---ALESQPLLGFTVTLVKDENSESKVFQLLHK 76

Query: 63 TKHWFVLR 70
             ++V +
Sbjct: 77 GMVFYVFK 84

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWD 117
            W K WFVL    L YY+D K E    + G + L +    +  P    +R   F+     
Sbjct: 38  QWNKRWFVLVDRCLFYYKDEKEES---ILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAG 94

Query: 118 SKRTILSAVTAGIRNNWMSAIKRTAAM 144
            +    SA +   +  W+ A+   A +
Sbjct: 95  VRTYFFSAESPEEQEAWIQAMGEAARV 121

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 3   NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQI 59
           +    W K WFVL    L YY+D K E    + G + L +    +  P    +R   F+ 
Sbjct: 34  SGVKQWNKRWFVLVDRCLFYYKDEKEES---ILGSIPLLSFRVAAVQPSDNISRKHTFKA 90

Query: 60  TTWTKHWFVLR 70
                  +   
Sbjct: 91  EHAGVRTYFFS 101

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 61  TWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
            W   WF      C L Y R  +          + L++     +   A    F+I T   
Sbjct: 25  GWKSRWFFYDERKCQLYYSRTAQDAN---PLDSIDLSSAVFDCKAD-AEEGIFEIKT--P 78

Query: 119 KRT-ILSAVTAGIRNNWMSAIKR 140
            R   L A T      W+  ++ 
Sbjct: 79  SRVITLKAATKQAMLYWLQQLQM 101

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 6/61 (9%)

Query: 3  NKKHTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQIT 60
               W   WF      C L Y R  +          + L++     +   A    F+I 
Sbjct: 21 GPIRGWKSRWFFYDERKCQLYYSRTAQDAN---PLDSIDLSSAVFDCKAD-AEEGIFEIK 76

Query: 61 T 61
          T
Sbjct: 77 T 77

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 57.0 bits (137), Expect = 2e-11
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 24/107 (22%)

Query: 59  ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----ARNFGFQI 113
              W + W VL G  + Y+  P  E+     G + L N TS    P      AR   F++
Sbjct: 20  FGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFEL 79

Query: 114 TTWDSKRT-------------------ILSAVTAGIRNNWMSAIKRT 141
            T   +R                     LSA T   R+ WM  + + 
Sbjct: 80  ITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQV 126

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 9/90 (10%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT----SLSEVPVARNFGF 111
            F    W K W  L      YY   K ++     G  A++       +       ++  F
Sbjct: 120 SFLGFEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMNNTLRKDGKKDCCF 176

Query: 112 QITTWDSKRT-ILSAVTAGIRNNWMSAIKR 140
           +I     KR    +A +      W+  +K 
Sbjct: 177 EICA-PDKRIYQFTAASPKDAEEWVQQLKF 205

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 44.0 bits (103), Expect = 4e-06
 Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 7/69 (10%)

Query: 6   HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT----SLSEVPVARNFGFQITT 61
             W K W  L      YY   K ++     G  A++       +       ++  F+I  
Sbjct: 124 FEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMNNTLRKDGKKDCCFEICA 180

Query: 62  WTKHWFVLR 70
             K  +   
Sbjct: 181 PDKRIYQFT 189

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 55.2 bits (133), Expect = 7e-11
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 9/97 (9%)

Query: 60  TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK 119
             W +    ++   L         +   L+  +    V   +E        F + +    
Sbjct: 25  KVWQRRKCSVKNGILTISHATSNRQPAKLN--LLTCQVKPNAE----DKKSFDLIS--HN 76

Query: 120 RT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
           RT    A        W+S +  +   +L    + PSS
Sbjct: 77  RTYHFQAEDEQDYVAWISVLTNSKEEALTMAFSGPSS 113

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 41.8 bits (98), Expect = 9e-06
 Identities = 6/65 (9%), Positives = 18/65 (27%), Gaps = 6/65 (9%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
            +  W +    ++   L         +   L+  +    V   +E        F + + 
Sbjct: 22 GIRKVWQRRKCSVKNGILTISHATSNRQPAKLN--LLTCQVKPNAE----DKKSFDLISH 75

Query: 63 TKHWF 67
           + + 
Sbjct: 76 NRTYH 80

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 54.9 bits (132), Expect = 8e-11
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 56  GFQITTWTKHWFVLRG-CSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVP-------VA 106
              +  W K+WF L     L+YY D   +     +   +   N+ +  E          +
Sbjct: 15  STILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKS 74

Query: 107 RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
           ++   QI   D K   L A +      W   ++ +
Sbjct: 75  KDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 16/97 (16%)

Query: 56  GFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------- 106
           G  +  W   WFVL      L YY      E     GV+ L  V +++            
Sbjct: 18  GAFMKPWKARWFVLDKTKHQLRYYDHRMDTE---CKGVIDLAEVEAVAPGTPTIGAPKTV 74

Query: 107 -RNFGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRT 141
                F + T  ++R     A        W+  I+  
Sbjct: 75  DEKAFFDVKT--TRRVYNFCAQDVPSAQQWVDRIQSC 109

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 41.6 bits (98), Expect = 9e-06
 Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 13/69 (18%)

Query: 3  NKKHTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-------- 52
               W   WFVL      L YY      E     GV+ L  V +++             
Sbjct: 19 AFMKPWKARWFVLDKTKHQLRYYDHRMDTE---CKGVIDLAEVEAVAPGTPTIGAPKTVD 75

Query: 53 RNFGFQITT 61
              F + T
Sbjct: 76 EKAFFDVKT 84

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
           G ++ TW + WF+L    L Y+     +E     G++ L N++    +   +   F++  
Sbjct: 15  GGRVKTWKRRWFILTDNCLYYFEYTTDKEPR---GIIPLENLSIREVLDPRKPNCFELYN 71

Query: 116 WDSK--------------------RT-ILSAVTAGIRNNWMSAIKR 140
              K                        +SA +   +  WM +IK 
Sbjct: 72  PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 117

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVL---------DGVVALNN--VTSLSEVPVARNFG 110
           W+  W VL G  L +++D K   +G L         +  V L    ++   +   +R   
Sbjct: 31  WSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKSSRKNV 90

Query: 111 FQITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
            ++ + D    ++   +  I + W  AI + 
Sbjct: 91  LELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 22/95 (23%)

Query: 1   MLNKKHT-----------WTKHWFVLRGCSLLYYRDPKAEESGVL---------DGVVAL 40
           +L++  T           W+  W VL G  L +++D K   +G L         +  V L
Sbjct: 13  VLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVEL 72

Query: 41  NN--VTSLSEVPVARNFGFQITTWTKHWFVLRGCS 73
               ++   +   +R    ++ +     ++++  S
Sbjct: 73  RGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDS 107

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLD---GVVALNN--VTSLSEVPVARNFGFQITTW 116
           W  +W  L+GC+L +Y                 V + N  V ++ E P  ++F F ++  
Sbjct: 39  WKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHP-KKDFVFCLSNS 97

Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAMS 145
                +    +     NW++AI    A +
Sbjct: 98  LGDAFLFQTTSQTELENWITAIHSACAAA 126

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 5   KHTWTKHWFVLRGCSLLYYRDPKAEESGVLD---GVVALNN--VTSLSEVPVARNFGFQI 59
           +  W  +W  L+GC+L +Y                 V + N  V ++ E P  ++F F +
Sbjct: 36  RRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHP-KKDFVFCL 94

Query: 60  TTWTKHWFVL 69
           +      F+ 
Sbjct: 95  SNSLGDAFLF 104

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 54.0 bits (130), Expect = 3e-10
 Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 19/110 (17%)

Query: 56  GFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------R 107
           G +   W    F+LR     L YY    AE+     G + L      S    +       
Sbjct: 28  GHRRKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGRKSEE 84

Query: 108 NFGFQITTWDSKRT--ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
              F+I T  +      L A T   R  W+ AI+  +       K+ PSS
Sbjct: 85  ENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQMASRTG----KSGPSS 128

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 15/80 (18%)

Query: 2   LNKK----HTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--- 52
           L K+      W    F+LR     L YY    AE+     G + L      S    +   
Sbjct: 24  LLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGR 80

Query: 53  ---RNFGFQITTWTKHWFVL 69
                  F+I T  +  + L
Sbjct: 81  KSEEENLFEIITADEVHYFL 100

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLD---GVVALNN--VTSLSEVPVARNFGFQITT 115
            W ++W  L+GC+LL+Y       +         +   +  V S+ E P  +   F ++ 
Sbjct: 38  KWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHP-KKEHVFCLSN 96

Query: 116 WDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
                 +  A +     NW++AI    A           + 
Sbjct: 97  SCGDVYLFQATSQTDLENWVTAIHSACASLFAKKHGKEDTV 137

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 5  KHTWTKHWFVLRGCSLLYYRDPKAEESGVLD---GVVALNN--VTSLSEVPVARNFGFQI 59
          +  W ++W  L+GC+LL+Y       +         +   +  V S+ E P  +   F +
Sbjct: 36 RRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHP-KKEHVFCL 94

Query: 60 TT 61
          + 
Sbjct: 95 SN 96

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 53.4 bits (128), Expect = 5e-10
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVL--------DGVVALNNVT-SLSEVPVARNFGF 111
            W   W VL G SL++YR+P                +  V L     +      +R    
Sbjct: 33  NWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRNVL 92

Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
            I T      +L +        W  A++  
Sbjct: 93  HIRTIPGHEFLLQSDHETELRAWHRALRTV 122

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 53.4 bits (128), Expect = 5e-10
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 56  GFQITTWTKHWFVLRG-CSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVPVA------- 106
              +  W ++WF L    +L YY D  A++    +     + ++    E           
Sbjct: 18  SSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRS 77

Query: 107 RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSST 157
           R+    +   +  R  L A T      W +A+    +         PS  +
Sbjct: 78  RDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPSGPS 128

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 3  NKKHTWTKHWFVLRG-CSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVPVA-------R 53
          +    W ++WF L    +L YY D  A++    +     + ++    E           R
Sbjct: 19 SILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSR 78

Query: 54 NFGFQITTWTKHWFVLRGCS 73
          +    +         L   +
Sbjct: 79 DGLLTVNLREGSRLHLCAET 98

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 55.5 bits (133), Expect = 6e-10
 Identities = 15/101 (14%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 58  QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------RNFGF 111
           Q   + K WF +    L+Y++DP    +     + +  +  ++               G 
Sbjct: 282 QTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGI 341

Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKAS 152
            I T   ++ + +  T   +  W++A ++     +L  + +
Sbjct: 342 TIVT-PDRKFLFACETESDQREWVAAFQKAVDRPMLPQEYA 381

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 52.7 bits (126), Expect = 9e-10
 Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 12/97 (12%)

Query: 53  RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFG 110
            N G       ++WFVL   +L +Y+D + +E      +++++N  +  + +  ++    
Sbjct: 21  NNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEK---KYMLSVDNLKLRDVEKGFMSSKHI 77

Query: 111 FQITT-------WDSKRTILSAVTAGIRNNWMSAIKR 140
           F +          D ++  L+  T    ++W ++  R
Sbjct: 78  FALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR 114

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 42.3 bits (99), Expect = 6e-06
 Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 4  KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFGFQITT 61
           K    ++WFVL   +L +Y+D + +E      +++++N  +  + +  ++    F +  
Sbjct: 26 MKGGSKEYWFVLTAENLSWYKDDEEKEK---KYMLSVDNLKLRDVEKGFMSSKHIFALFN 82

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 53.6 bits (128), Expect = 9e-10
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARN 108
                 + +  FVL    L YY     ++     G + ++ +  +  V            
Sbjct: 30  KTSPLNYKERLFVLTKSMLTYYEGRAEKKY--RKGFIDVSKIKCVEIVKNDDGVIPCQNK 87

Query: 109 FGFQITTWDSKRTILSAVTAGIRNNWMSAIK 139
           + FQ+   D+    + A +   R+ W+  +K
Sbjct: 88  YPFQVVH-DANTLYIFAPSPQSRDLWVKKLK 117

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 9/62 (14%)

Query: 7  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARNFGFQI 59
           + +  FVL    L YY     ++     G + ++ +  +  V            + FQ+
Sbjct: 35 NYKERLFVLTKSMLTYYEGRAEKKY--RKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQV 92

Query: 60 TT 61
            
Sbjct: 93 VH 94

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 15/95 (15%)

Query: 56  GFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------R 107
           G +   W    F+LR     L YY    AE+     G + L      S    +       
Sbjct: 17  GHRRKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGRKSEE 73

Query: 108 NFGFQITTWDSKRT--ILSAVTAGIRNNWMSAIKR 140
              F+I T  +      L A T   R  W+ AI+ 
Sbjct: 74  ENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQM 106

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 15/80 (18%)

Query: 2  LNKK----HTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--- 52
          L K+      W    F+LR     L YY    AE+     G + L      S    +   
Sbjct: 13 LLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---PLGAIHLRGCVVTSVESNSNGR 69

Query: 53 ---RNFGFQITTWTKHWFVL 69
                 F+I T  +  + L
Sbjct: 70 KSEEENLFEIITADEVHYFL 89

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 56  GFQITTWTKHWFVL--RGCSLLYYRDPKAE--ESGVLDGVVALNNVTSLSEVPVA----R 107
                 + + +F+L  +   LL+Y D            G + L  ++ +S          
Sbjct: 26  NENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKT 85

Query: 108 NFGFQITTWDSKRT-ILSAVTAGIRNNWMSAIKRTAAM 144
            F F I      +   L A       +W+ A+ + +  
Sbjct: 86  PFCFVINA--LSQRYFLQANDQKDLKDWVEALNQASKS 121

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 3  NKKHTWTKHWFVL--RGCSLLYYRDPKAE--ESGVLDGVVALNNVTSLSEVPVA----RN 54
               + + +F+L  +   LL+Y D            G + L  ++ +S           
Sbjct: 27 ENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTP 86

Query: 55 FGFQITTWTKHWF 67
          F F I   ++ +F
Sbjct: 87 FCFVINALSQRYF 99

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 51.1 bits (122), Expect = 3e-09
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 61  TWTKHWFVLRGCSLLYYRDPK-AEESGVLDGVVALNNVTSLSEVPVA---RNFGFQITTW 116
           +W   + VLR  SL +Y+D K A       G V ++   +   V      R   F++   
Sbjct: 31  SWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQ 90

Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAMSLL 147
           D K  +  A      ++W+  +    A    
Sbjct: 91  DGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 4  KKHTWTKHWFVLRGCSLLYYRDPK-AEESGVLDGVVALNNVTSLSEVPVA---RNFGFQI 59
             +W   + VLR  SL +Y+D K A       G V ++   +   V      R   F++
Sbjct: 28 ANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKL 87

Query: 60 TTWTKHWFVL 69
                 ++ 
Sbjct: 88 GLQDGKEYLF 97

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 51.1 bits (122), Expect = 4e-09
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVA------- 106
           G +   W    FVLR      +    ++E     G  +L    V++L +  V        
Sbjct: 28  GHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNV 87

Query: 107 RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAA 143
           +   F++ T D     + A +   R  W+ AIK+  +
Sbjct: 88  QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 51.7 bits (123), Expect = 4e-09
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA---RNFGFQITTWD 117
            W + + VLRG SL  Y+D + + +   +    ++    L ++  +   R   F++TT  
Sbjct: 28  PWKQMYVVLRGHSLYLYKDKREQTTP-SEEEQPISVNACLIDISYSETKRKNVFRLTT-- 84

Query: 118 SKRT-ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
           S    +  A        W+  I+ ++ ++  D   +   
Sbjct: 85  SDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRD 123

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 5  KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA---RNFGFQITT 61
             W + + VLRG SL  Y+D + + +   +    ++    L ++  +   R   F++TT
Sbjct: 26 IRPWKQMYVVLRGHSLYLYKDKREQTTP-SEEEQPISVNACLIDISYSETKRKNVFRLTT 84

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 49.7 bits (119), Expect = 5e-09
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 59  ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
           I  W   W VL+  +L YY+     E G   G + L+               F I+   +
Sbjct: 14  IHGWQDRWVVLKNNALSYYKSEDETEYGCR-GSICLSKAV--ITPHDFDECRFDISV--N 68

Query: 119 KRTI-LSAVTAGIRNNWMSAIKR 140
                L A     R  W+ AI++
Sbjct: 69  DSVWYLRAQDPDHRQQWIDAIEQ 91

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
          N  H W   W VL+  +L YY+     E G   G + L+               F I+  
Sbjct: 12 NYIHGWQDRWVVLKNNALSYYKSEDETEYGCR-GSICLSKAV--ITPHDFDECRFDISVN 68

Query: 63 TKHWF 67
             W+
Sbjct: 69 DSVWY 73

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 59  ITTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 116
           +T W   +FVL      L Y+ + ++       G + L             +  F +   
Sbjct: 21  VTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPR-GTLQLAGAVI--SPSDEDSHTFTVNAA 77

Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAAM---SLLDDKASPSS 155
             ++  L A  A  R +W+S ++        ++  + + PSS
Sbjct: 78  SGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNSGPSS 119

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 5/73 (6%)

Query: 3  NKKHTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQIT 60
          N    W   +FVL      L Y+ + ++       G + L             +  F + 
Sbjct: 19 NLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPR-GTLQLAGAV--ISPSDEDSHTFTVN 75

Query: 61 TWTKHWFVLRGCS 73
            +   + LR   
Sbjct: 76 AASGEQYKLRATD 88

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 49.7 bits (118), Expect = 1e-08
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 26/108 (24%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
              + +WTK W VL+   LL Y+  K  +     G V LN    +        F F++  
Sbjct: 17  RGTLKSWTKLWCVLKPGVLLIYKTQKNGQ---WVGTVLLNACEIIERPSKKDGFCFKLFH 73

Query: 116 WDSKRT-----------------------ILSAVTAGIRNNWMSAIKR 140
              +                         I+ A +      WM A++ 
Sbjct: 74  PLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALEL 121

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 48.0 bits (114), Expect = 4e-08
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-----RNFGFQITT 115
           +W   + V+    + +Y+D K+  SG+        ++   +   VA     +   F++  
Sbjct: 22  SWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE-AICEVALDYKKKKHVFKLRL 80

Query: 116 WDSKRTILSAVTAGIRNNWMSAIK 139
            D    +  A      N W+ AI 
Sbjct: 81  SDGNEYLFQAKDDEEMNTWIQAIS 104

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 18/78 (23%)

Query: 1  MLNKKH------------TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE 48
           LN+KH            +W   + V+    + +Y+D K+  SG+        ++   + 
Sbjct: 4  FLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKE-AI 62

Query: 49 VPVA-----RNFGFQITT 61
            VA     +   F++  
Sbjct: 63 CEVALDYKKKKHVFKLRL 80

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 49.9 bits (118), Expect = 4e-08
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 11/106 (10%)

Query: 61  TWTKHWFVLRGCS-------LLYYRDPKAEESGVLD--GVVALNNVTSLSEVPVARN-FG 110
           +  K +FVLR  S       L YY + K            + L +  ++++   ++N   
Sbjct: 21  SMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHL 80

Query: 111 FQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSS 156
             + T D     ++A +   +++W  A+ +    +      + +  
Sbjct: 81  VALYTRDEHFA-IAADSEAEQDSWYQALLQLHNRAKGHHDGAAALG 125

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 47.6 bits (112), Expect = 3e-07
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 2  LNKKHTWTKHWFVLRGCS-------LLYYRDPKAEESGVLD--GVVALNNVTSLSEVPVA 52
          L K  +  K +FVLR  S       L YY + K            + L +  ++++   +
Sbjct: 16 LRKPKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADS 75

Query: 53 RN-FGFQITTWTKHWFV 68
          +N     + T  +H+ +
Sbjct: 76 KNKHLVALYTRDEHFAI 92

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 48.5 bits (115), Expect = 4e-08
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 53  RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGF 111
           R     +  + +HW V +  +L YY+  + E  G     + L     + +V V+ + F  
Sbjct: 19  RPRKLTLKGYRQHWVVFKETTLSYYKS-QDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCI 77

Query: 112 QITTWDSKRT---ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPS 154
           ++     +      L          WM+  +  +    + D +  S
Sbjct: 78  KLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMADSSYTS 123

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 6  HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWTK 64
            + +HW V +  +L YY+  + E  G     + L     + +V V+ + F  ++   + 
Sbjct: 26 KGYRQHWVVFKETTLSYYKS-QDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSP 84

Query: 65 H 65
           
Sbjct: 85 E 85

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 59  ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
           +T W   WFVL    L YY        G   G + +       +V  A N   ++     
Sbjct: 12  LTGWQPRWFVLDNGILSYYDSQDDVCKGSK-GSIKMAVCE--IKVHSADNTRMELIIPGE 68

Query: 119 KRTILSAVTAGIRNNWMSAIKRTAAMS 145
           +   + AV A  R  W+ A+  + A  
Sbjct: 69  QHFYMKAVNAAERQRWLVALGSSKASL 95

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 61  TWTKHWFVLRGCSLLY-----YRDPKAEESGV--LDGVVALNNVTSLSEVPVARNFGFQI 113
            W K +FVL   S        YR+ KAE   +  LDG   ++       +   R F F  
Sbjct: 24  RWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYT-VDYTDPQPGLEGGRAF-FNA 81

Query: 114 TTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSST 157
              +    I ++     R  W+ A+ R    S      + S  +
Sbjct: 82  VK-EGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSGPS 124

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESG---VLDGVVALNNVTSLSEVPVA---RNFGFQITT 115
           W K +   +   + +Y+D K  +S       G  + +   +  E+      +    ++  
Sbjct: 32  WDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKL 91

Query: 116 WDSKRTILSAVTAGIRNNWMSAIKRTAAMS 145
            +    +L A      + W++++K  +  +
Sbjct: 92  ANGALFLLQAHDDTEMSQWVTSLKAQSDST 121

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 45.3 bits (107), Expect = 6e-07
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 13/97 (13%)

Query: 56  GFQITTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNVT----SLSEVPVARNFG 110
           G  I TW   +F+L+   + + Y++       V      LNN +     L +    R   
Sbjct: 18  GEYIKTWRPRYFLLKNDGTFIGYKE---RPQDVDQREAPLNNFSVAQCQLMKTERPRPNT 74

Query: 111 FQI----TTWDSKRTILSAVTAGIRNNWMSAIKRTAA 143
           F I     T   +RT     T   R  W +AI+  A 
Sbjct: 75  FIIRCLQWTTVIERT-FHVETPEEREEWTTAIQTVAD 110

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 44.6 bits (105), Expect = 8e-07
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 7/94 (7%)

Query: 59  ITTWTKHWFVLRGCSLLYYRDPKAEESGVLD------GVVALNNVTSLSEVPVARNFGFQ 112
           +++WT++W VL G +LLYY       +            V++                FQ
Sbjct: 21  LSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQ 80

Query: 113 ITTWDSKRTIL-SAVTAGIRNNWMSAIKRTAAMS 145
           +   D          +      W   +      S
Sbjct: 81  LNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 29/109 (26%)

Query: 61  TWTKHWFVLRGCSLLYYR-DPKAEESGVLDGVVALNNVTSLSEVPV-------------- 105
            + K  F+L    L YY  D +    G   G + +  +T +  V                
Sbjct: 23  NFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRG 82

Query: 106 -------------ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
                           + FQ+   D     + + T  +R  W+  +K  
Sbjct: 83  EESSEMEQISIIERFPYPFQVVY-DEGPLYVFSPTEELRKRWIHQLKNV 130

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 19/107 (17%), Positives = 28/107 (26%), Gaps = 21/107 (19%)

Query: 61  TWTKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------------- 106
            W K +  L     LLY+              + L   T                     
Sbjct: 21  EWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASG 80

Query: 107 -------RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSL 146
                   NF F I +   +     A +   R+ W+ AI+     SL
Sbjct: 81  SAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 34  LDGVVALNNVTSLSEVP-------VARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESG 86
           L+G      +  ++ +P       V +     +  + ++W   +  S+  Y+  + E SG
Sbjct: 31  LEGGKTSTILGDITSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKE-ESSG 89

Query: 87  VLDGVVALNNVTSLSEVPVA-RNFGFQITTWDSKRT---ILSAVTAGIRNNWMSAIK 139
                + L       +V ++ + F  ++    ++      L         +WM+A +
Sbjct: 90  TPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACR 146

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 15/102 (14%)

Query: 59  ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT---------SLSEVPVARNF 109
           + +++K ++VL    L  ++    ++  V    +AL+  T         + S      + 
Sbjct: 19  LKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDA 78

Query: 110 GFQITTWDSKRT------ILSAVTAGIRNNWMSAIKRTAAMS 145
            F +    +         +  A +     +W   +K   + S
Sbjct: 79  KFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTSTS 120

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 38.8 bits (90), Expect = 9e-05
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 2  LNKK----HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGF 57
          L ++     +++K ++VL    L  ++    ++  V    +AL+  T ++E     +   
Sbjct: 12 LERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECT-VTEHSRKNSTSS 70

Query: 58 QITTWTKHWFVLRGCS 73
            +T +   FVL    
Sbjct: 71 PNSTGSDAKFVLHAKQ 86

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 43.2 bits (101), Expect = 9e-06
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN------VTSLSEVPVARNFGFQI- 113
           +W K +  LR   L       +     L  +  L +      +    +     + G  I 
Sbjct: 147 SWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIK 206

Query: 114 ---TTWDSKRT-ILSAVTAGIRNNWMSAIK 139
                 ++K   +L A     R +WM+A +
Sbjct: 207 PNKVRNETKELRLLCAEDEQTRTSWMTAFR 236

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 38.6 bits (89), Expect = 4e-04
 Identities = 8/40 (20%), Positives = 13/40 (32%)

Query: 4   KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNV 43
            K +W K +  LR   L       +     L  +  L + 
Sbjct: 144 GKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDS 183

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 117

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 14/94 (14%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGV------LDGVVALNNVTSLSEVPVARN---FGFQ 112
           W K + ++    +L+Y   + +E         +D +  +  VT               FQ
Sbjct: 20  WVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQ 79

Query: 113 ITT-----WDSKRTILSAVTAGIRNNWMSAIKRT 141
           I         +K  +L A +   +  W+S + + 
Sbjct: 80  ILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 14/94 (14%)

Query: 61  TWTKHWFVLRGCS------LLYYRDP-KAEESGVLDGVVALNNVTSLSEVPVARN----- 108
            W +    L G S      L     P K         V+ L++   ++E     +     
Sbjct: 29  KWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDT 88

Query: 109 FGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTA 142
             F + T   +R  L A  A  R +W+ AI   A
Sbjct: 89  SAFFLET--KERLYLLAAPAAERGDWVQAICLLA 120

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 66  WFVLRGCSLLYYRDPKAEESGVLDGVVALNN--VTSLSEVPVARNFGFQITTWDSKRTIL 123
           +F+L    L+           +  G + +    V  L E+  +    F+IT    +R ++
Sbjct: 48  YFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDC-MFEITGSTVERIVV 106

Query: 124 SAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
                     WM  + R         K+ PSS
Sbjct: 107 HCNNNQDFQEWMEQLNRLT-------KSGPSS 131

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 61  TWTKHWFVLRGCS--LLYYRDPKAEESGVLDGVVALNNVTSLSEVP---VARNFGFQITT 115
           TW++ W  +      +L+ +     + G L   + L +       P   +     +++  
Sbjct: 22  TWSEVWAAIPMSDPQVLHLQ--GGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQW 79

Query: 116 WDSKRT-ILSAVTAGIRNNWMSAIKRTA 142
             +K++  LSA +A ++  W+  +   A
Sbjct: 80  --AKQSWYLSASSAELQQQWLETLSTAA 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.96
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.96
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.89
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.89
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.89
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.88
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.88
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.88
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.88
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.87
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.87
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.87
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.87
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.86
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.86
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.86
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.86
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.86
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.86
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.86
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.86
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.85
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.85
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.85
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.85
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.85
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.85
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.85
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.85
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.85
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.85
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.84
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.84
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.84
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.84
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.84
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.84
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.83
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.83
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.83
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.83
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.82
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.82
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.82
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.82
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.82
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.81
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.81
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.8
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.8
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.79
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.79
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.77
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.76
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.75
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.73
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.73
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.72
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.71
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.66
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.66
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.62
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.61
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.59
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.59
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.46
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.44
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.43
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.4
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	99.4
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.23
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	99.2
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.19
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	99.14
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.12
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.11
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.1
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.05
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.04
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.04
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.04
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.03
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.02
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.02
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.01
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.0
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	98.99
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	98.99
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	98.98
3cxb_B	112	Pleckstrin homology domain-containing family M mem	98.97
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.97
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	98.95
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	98.94
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	98.94
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	98.92
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	98.91
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	98.9
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	98.9
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	98.9
2d9y_A	117	Pleckstrin homology domain-containing protein fami	98.9
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	98.89
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.89
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	98.88
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	98.87
2yry_A	122	Pleckstrin homology domain-containing family A mem	98.87
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	98.85
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	98.83
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	98.83
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	98.83
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	98.82
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	98.8
2dkp_A	128	Pleckstrin homology domain-containing family A mem	98.78
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	98.78
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	98.78
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	98.78
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	98.77
2d9v_A	130	Pleckstrin homology domain-containing protein fami	98.76
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	98.75
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	98.73
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	98.71
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	98.71
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	98.7
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	98.67
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	98.67
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	98.62
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	98.6
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	98.57
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	98.55
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	98.53
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	98.49
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	98.49
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	98.49
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	98.45
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	98.45
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.31
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.28
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	98.25
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	98.24
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	98.16
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	98.15
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	98.11
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.04
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	97.95
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	97.91
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	97.75
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	97.73
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	97.65
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	97.61
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	97.61
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	97.58
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.57
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.57
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	97.56
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	97.53
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	97.53
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	97.48
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	97.45
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	97.41
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	97.41
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	97.36
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	97.34
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.33
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	97.26
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	97.24
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	97.19
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	97.1
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	97.06
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	96.9
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	96.8
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	95.55
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	95.22
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	94.2
3a98_B	203	Engulfment and cell motility protein 1; protein-pr	93.22
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	92.92
2rrf_A	141	Zinc finger FYVE domain-containing protein 21; zfy	92.4
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	91.28
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	89.38
3ulb_A	121	Target of rapamycin complex 2 subunit AVO1; PH dom	86.03

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.96  E-value=1.3e-28  Score=184.64  Aligned_cols=118  Identities=24%  Similarity=0.533  Sum_probs=98.1

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceee-----eeeeceEEEEEEeCCEEEEEe
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGF-----QITTWTKHWFVLRGCSLLYYR   78 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~-----~~~~WkkrwfvL~~~~L~yyk   78 (160)
                      .-++||||||||+++.|+||+...+...   .|.+.              |.|.     ..+.|++|||||+++.|+||+
T Consensus        33 ~~~~w~~rw~vl~~~~~~~~~~~~~~~k---~G~L~--------------K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk   95 (228)
T 3tfm_A           33 LMNSWKRRWCVLKDETFLWFRSKQEALK---QGWLH--------------NNGGGSSTLSRRNWKKRWFVLRQSKLMYFE   95 (228)
T ss_dssp             TTCCCEEEEEEEETTEEEEESSCCCSSE---EEEEE--------------ECGGGCSSSCGGGCEEEEEEECSSEEEEES
T ss_pred             ccccceEEEEEEeCCEEEEeccCCCcce---EEEEE--------------EECCCcCCcccCCceEEEEEEeCCEEEEEe
Confidence            4678999999999999999997654332   22222              2222     238999999999999999999


Q ss_pred             CCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929          79 DPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus        79 ~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      ++.+..+   .|.|+|.++..+.... .++++|+|.+++ ++|+|+|+|++|+++||.+|+.++.
T Consensus        96 ~~~~~~~---~g~I~L~~~~~v~~~~-~k~~~F~I~t~~-r~~~l~A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A           96 NDSEEKL---KGTVEVRSAKEIIDNT-NKENGIDIIMAD-RTFHLIAESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             STTCCSE---EEEEEGGGCSEEEEET-TTTSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCcce---eEEEEcCCCEEeccCC-CCCcEEEEEcCC-cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            9988665   8999999999766544 578999999975 9999999999999999999999997

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.96  E-value=2.5e-28  Score=195.63  Aligned_cols=135  Identities=21%  Similarity=0.392  Sum_probs=101.3

Q ss_pred             CCCCceEEEEEE--eCCeEEEeeCCCcccCCcccceeecccceeeccc----------------cc--------------
Q psy8929           4 KKHTWTKHWFVL--RGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV----------------PV--------------   51 (160)
Q Consensus         4 ~~~~Wkkrwfvl--~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~----------------~~--------------   51 (160)
                      ..++||||||||  +++.|+||+++.+..+   .|.|+|..+..+...                ..              
T Consensus       158 ~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p---~g~I~L~~~~~~~~~~~~~~~~~f~I~~~~~~~~R~y~l~A~s~~e~  234 (386)
T 3lju_X          158 DNGQFLSRKFVLTEREGALKYFNRNDAKEP---KAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFIYHEDGKEI  234 (386)
T ss_dssp             SSCCEEEEEEEEETTTTEEEEEC-----CC---SEEEEGGGEEEEECHHHHTSTTCEEEEEEETTEEEEEEEECSSHHHH
T ss_pred             ccCCceEEEEEEEcCCCEEEEECCCCccCc---ccEEEeeccEEEEcccccCCCceEEEEEecCCCceEEEEEcCCHHHH
Confidence            468899999999  8999999999877666   799988874322210                00              


Q ss_pred             ----------------------------------------ccceeeee-eeceEEEEEEeCCEEEEEeCCCCccCCccce
Q psy8929          52 ----------------------------------------ARNFGFQI-TTWTKHWFVLRGCSLLYYRDPKAEESGVLDG   90 (160)
Q Consensus        52 ----------------------------------------~kk~g~~~-~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g   90 (160)
                                                              ..|.|... ++|++|||||+++.|+||+++.+..+   .|
T Consensus       235 ~~Wi~aIr~a~~~~lq~~~p~~~~~el~~~l~~~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~~---~G  311 (386)
T 3lju_X          235 VDWFNALRAARFHYLQVAFPGASDADLVPKLSRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFA---RG  311 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCHHHHGGGSSCCCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEESSTTCSBC---SE
T ss_pred             HHHHHhhhhcccccccccCCccchhhcccccccccceeeeEEEECCCCCCCCcccEEEEECCEEEEEecCCCccc---ce
Confidence                                                    01122233 78999999999999999999998777   89


Q ss_pred             eEEcCCceee---ee-cCC--C---CCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhccc
Q psy8929          91 VVALNNVTSL---SE-VPV--A---RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMS  145 (160)
Q Consensus        91 ~I~L~~~~~v---~~-~~~--~---~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~  145 (160)
                      .|+|..+..+   .. .+.  .   .+++|+|++++ |+|+|+|+|++|+++||.||+.++..|
T Consensus       312 ~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I~t~~-rty~l~A~s~~e~~~Wi~aL~~~i~~p  374 (386)
T 3lju_X          312 EVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPD-RKFLFACETESDQREWVAAFQKAVDRP  374 (386)
T ss_dssp             EEECCCGGGTCEEEESCCTTCCSCCSCEEEEEECSS-CEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred             EEEeecceeeeeecccCCccccccCCCcEEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            9999887653   21 222  1   26999999986 999999999999999999999999754

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=6.4e-23  Score=139.31  Aligned_cols=88  Identities=22%  Similarity=0.302  Sum_probs=74.6

Q ss_pred             cceee-eeeeceEEEEEEeCCEEEEEe----CCCCccCCccceeEEcCCceeeeec---C--CCCCceEEEEeCCCcEEE
Q psy8929          53 RNFGF-QITTWTKHWFVLRGCSLLYYR----DPKAEESGVLDGVVALNNVTSLSEV---P--VARNFGFQITTWDSKRTI  122 (160)
Q Consensus        53 kk~g~-~~~~WkkrwfvL~~~~L~yyk----~~~~~~~~~~~g~I~L~~~~~v~~~---~--~~~~~~F~i~t~~~r~~~  122 (160)
                      .|.|. ..++|++|||||++..|+||+    ++.+.++   .|.|.|.+++ |..+   +  .+++++|+|++++ ++|+
T Consensus        15 ~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p---~G~I~L~g~t-V~~~~~~~~~~~~k~~F~~v~~~-~ty~   89 (126)
T 1wi1_A           15 WAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEP---QELLQLDGYT-VDYTDPQPGLEGGRAFFNAVKEG-DTVI   89 (126)
T ss_dssp             EEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCC---SEEEECSSCE-EEECCCCSSCCSCSSEEEEECSS-CEEE
T ss_pred             EEeCCCcccccceEEEEEeCCEEEEEEcccccccCCCC---ceEEECCCcE-EEEecCCcccccCceEEEEecCC-ceEE
Confidence            34444 568999999999999999999    8888777   8999999998 4432   2  2578999999974 7899


Q ss_pred             EEcCCHHHHHHHHHHHHHHhccc
Q psy8929         123 LSAVTAGIRNNWMSAIKRTAAMS  145 (160)
Q Consensus       123 l~a~s~~e~~~Wi~al~~~~~~~  145 (160)
                      |+|+|++||+.||.||..|+...
T Consensus        90 ~~Adseee~~~WikAi~~A~~~~  112 (126)
T 1wi1_A           90 FASDDEQDRILWVQAMYRATGQS  112 (126)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCS
T ss_pred             EEcCCHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999743

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=7.9e-23  Score=140.83  Aligned_cols=88  Identities=25%  Similarity=0.386  Sum_probs=74.0

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCC--------------
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS--------------  118 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~--------------  118 (160)
                      .|.| .++.|++|||||+++.|+||+++.+..+   .|.|+|.++..+......++++|.|.+++.              
T Consensus        15 ~K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~p---~G~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~   90 (130)
T 1v88_A           15 KIRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQW---VGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAV   90 (130)
T ss_dssp             EECC-SSSSCEEEEEEEETTEEEEESCSSSCCC---CEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCTTSCSC
T ss_pred             EEeC-CCCCceEEEEEEECCEEEEECCCCCCCc---eEEEEcCCCEEEECCCCCCCeEEEEEcCCccccccccCCccccc
Confidence            3445 7789999999999999999999998777   899999999954433334569999998653              


Q ss_pred             ---------cEEEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         119 ---------KRTILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       119 ---------r~~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                               +.|+|+|+|++|+++||.||+.++..
T Consensus        91 g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~  125 (130)
T 1v88_A           91 GSITQPLPSSYLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             SCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             ccccccCCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence                     34999999999999999999999863

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=1.9e-22  Score=135.07  Aligned_cols=95  Identities=22%  Similarity=0.348  Sum_probs=80.0

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC--CCCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP--VARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~--~~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      .|+|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+....  ..++++|+|.++++++|+|+|+|++|
T Consensus        12 ~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e   88 (113)
T 1pls_A           12 VKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSP---KGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEE   88 (113)
T ss_dssp             EEESSSSSCCEEEEEEEETTEEEEESSTTCSSC---SEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEECSSHHH
T ss_pred             EEeCCCCCCceEEEEEEECCEEEEEeCCCCCCc---ceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEECCCHHH
Confidence            455667789999999999999999999987776   8999999999765222  36789999999877999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCC
Q psy8929         131 RNNWMSAIKRTAAMSLLDDK  150 (160)
Q Consensus       131 ~~~Wi~al~~~~~~~~~~~~  150 (160)
                      +++||.+|+.++........
T Consensus        89 ~~~Wi~ai~~~~~~~~~~~~  108 (113)
T 1pls_A           89 RDAWVRDINKAIKCIEGLEH  108 (113)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhccchhhh
Confidence            99999999999985444333

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.88  E-value=3.8e-22  Score=132.81  Aligned_cols=87  Identities=16%  Similarity=0.182  Sum_probs=76.1

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      |+|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+...+. .++++|+|.++++++|+|+|+|++|++
T Consensus        16 K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~---~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~   92 (109)
T 1wgq_A           16 RSKGSKKPWKHLWFVIKNKVLYTYAASEDVAA---LESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQ   92 (109)
T ss_dssp             EESSTTSCCEEEEEEEETTEEEEESCTTCSSC---SEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEECSSHHHHH
T ss_pred             eCCCCCCCceeEEEEEeCCEEEEECCCCcCcc---CceEECCCCEEEECCCCCCCCcEEEEEeCCCeEEEEECCCHHHHH
Confidence            44556789999999999999999999988776   89999999997665543 467999999987788999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8929         133 NWMSAIKRTAA  143 (160)
Q Consensus       133 ~Wi~al~~~~~  143 (160)
                      .||.+|+.++.
T Consensus        93 ~Wi~al~~a~~  103 (109)
T 1wgq_A           93 RWIDAFQEGTV  103 (109)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=1.8e-22  Score=141.97  Aligned_cols=92  Identities=17%  Similarity=0.232  Sum_probs=77.9

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeec-C-CCCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV-P-VARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~-~-~~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      .|.|...++|++|||||+++.|+||+++.+..+   .|.|+|.+++.+... + ..++++|.|++++ ++|+|+|+|++|
T Consensus        25 ~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~---~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~-r~~~f~A~s~ee  100 (149)
T 1x1f_A           25 LIKRSGYREYEHYWTELRGTTLFFYTDKKSIIY---VDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK-EEVQLKTENTES  100 (149)
T ss_dssp             EEECTTCCSCEEEEEEEETTEEEEESCSSCSSC---SEECCCSSCCEEEECCCTTSCCCEEEEECSS-CCEEEECSSHHH
T ss_pred             EEeCCCCCCceeEEEEEcCCEEEEEeCCCcccc---CcEEECCCceEEeeccCCCCcCcEEEEEcCC-CEEEEEcCCHHH
Confidence            455667799999999999999999999998877   799999999865322 2 2457899999986 899999999999


Q ss_pred             HHHHHHHHHHHhcccCCC
Q psy8929         131 RNNWMSAIKRTAAMSLLD  148 (160)
Q Consensus       131 ~~~Wi~al~~~~~~~~~~  148 (160)
                      +++||.||+.++.++.+.
T Consensus       101 ~~eWi~aI~~v~~~~~p~  118 (149)
T 1x1f_A          101 GEEWRGFILTVTELSVPQ  118 (149)
T ss_dssp             HHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHHHHHHHHcccCCC
Confidence            999999999998865543

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.88  E-value=4.5e-22  Score=133.60  Aligned_cols=84  Identities=19%  Similarity=0.201  Sum_probs=72.0

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceee--eecC-CCCCceEEEEeCCCcEEEEEcCCHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL--SEVP-VARNFGFQITTWDSKRTILSAVTAGIRNNW  134 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v--~~~~-~~~~~~F~i~t~~~r~~~l~a~s~~e~~~W  134 (160)
                      ..+.|++|||||+++.|+||+++++..+   .+.|+|.++...  ...+ ..++|+|+|.++++++|+|+|+|++||++|
T Consensus        16 ~~k~Wk~rwfvL~~~~L~~yk~~~~~~p---~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~f~A~s~ee~~~W   92 (112)
T 3cxb_B           16 GKEHWKTCFVVLSNGILYQYPDRTDVIP---LLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEW   92 (112)
T ss_dssp             SCCCCEEEEEEEETTEEEEESSSSCCSC---SEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEEECSSHHHHHHH
T ss_pred             CCCCceEEEEEEECCEEEEECCCCCCCc---cceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEEEEcCCHHHHHHH
Confidence            5789999999999999999999988777   899999977532  2222 368899999988789999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8929         135 MSAIKRTAAM  144 (160)
Q Consensus       135 i~al~~~~~~  144 (160)
                      |.+|+.++..
T Consensus        93 i~ai~~~~~~  102 (112)
T 3cxb_B           93 MQHLCQAVSK  102 (112)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhhc
Confidence            9999999874

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.88  E-value=3.4e-22  Score=134.55  Aligned_cols=90  Identities=19%  Similarity=0.302  Sum_probs=75.0

Q ss_pred             cceeeeee-eceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCC-------cEE
Q psy8929          53 RNFGFQIT-TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDS-------KRT  121 (160)
Q Consensus        53 kk~g~~~~-~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~-------r~~  121 (160)
                      ++.++..+ +|++|||||++.+|+|||++.+.++   +|.|+|.+.. |.+++.   .++++|+|.++++       ++|
T Consensus        20 k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~---~G~IpL~~~~-vr~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y   95 (125)
T 1dyn_A           20 INNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEK---KYMLSVDNLK-LRDVEKGFMSSKHIFALFNTEQRNVYKDYRQL   95 (125)
T ss_dssp             ESCCCGGGTSSEEEEEEEESSEEEEESSTTCSCE---EEEEECTTEE-EEECCSCSSSSCEEEEEEETTSSCSSTTCSSE
T ss_pred             EecCccccCCceeeEEEEeccceeeecCCccccc---ceEEECCCce-EeccCCCCCCCceEEEEECCCCccccccceEE
Confidence            43345555 5999999999999999999999888   8999999998 555443   6889999998765       499


Q ss_pred             EEEcCCHHHHHHHHHHHHHHhcccC
Q psy8929         122 ILSAVTAGIRNNWMSAIKRTAAMSL  146 (160)
Q Consensus       122 ~l~a~s~~e~~~Wi~al~~~~~~~~  146 (160)
                      .|+|+|.+|+++||++|.+|.-.|+
T Consensus        96 ~LsA~t~ee~~~Wi~s~~ra~v~p~  120 (125)
T 1dyn_A           96 ELACETQEEVDSWKASFLRAGVYPE  120 (125)
T ss_dssp             EEEESSHHHHHHHHHHHHHTTCEEC
T ss_pred             EEeCCCHHHHHHHHHHHHhCccCcC
Confidence            9999999999999999976644553

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.87  E-value=2.1e-21  Score=130.36  Aligned_cols=84  Identities=19%  Similarity=0.404  Sum_probs=74.0

Q ss_pred             ceee-eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          54 NFGF-QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        54 k~g~-~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      |.|. ..+.|++|||||+++.|+||+++.+..+   .|.|+|.++..|...+   +++|.|.+++ ++|+|+|+|++|++
T Consensus        16 K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~---~g~i~l~~~~~v~~~~---~~~F~i~~~~-r~~~l~a~s~~e~~   88 (115)
T 2cod_A           16 KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYS---KGIIPLSAISTVRVQG---DNKFEVVTTQ-RTFVFRVEKEEERN   88 (115)
T ss_dssp             ECCSSSSSCCEEEEEEECSSEEEEEESSCCSSC---CCEEETTTEEEEEEET---TTEEEEEESS-CCEEEECSSHHHHH
T ss_pred             EcCCCCCCCCceEEEEEECCEEEEEcCCCCccc---CCEEECCcceEEEeCC---CCEEEEEeCC-cEEEEECCCHHHHH
Confidence            3344 6789999999999999999999988666   8999999998777653   6999999975 99999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8929         133 NWMSAIKRTAAM  144 (160)
Q Consensus       133 ~Wi~al~~~~~~  144 (160)
                      +||.+|+.++..
T Consensus        89 ~Wi~~l~~~~~~  100 (115)
T 2cod_A           89 DWISILLNALKS  100 (115)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999953

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=6.5e-22  Score=132.52  Aligned_cols=94  Identities=23%  Similarity=0.468  Sum_probs=79.2

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      .|.|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..|...+.  .++++|.|.+++ ++|+|+|+|++|
T Consensus        15 ~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~-r~~~l~a~s~~e   90 (115)
T 2dn6_A           15 MKKGHRRKNWTERWFVLKPNIISYYVSEDLKDK---KGDILLDENCCVESLPDKDGKKCLFLVKCFD-KTFEISASDKKK   90 (115)
T ss_dssp             EEECTTSSCEEEEEEEECSSCEEEESSTTCSSE---EEEECCCTTCEEEEECCCTTCCSEEEEECSS-CEEEEECSSHHH
T ss_pred             EecCCCCCCcEEeEEEEECCEEEEeCCCCCccc---CcEEEecCcEEEEECCCCCCCeeEEEEEeCC-CEEEEEcCCHHH
Confidence            344556789999999999999999999887766   89999999876776643  577999999985 899999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCC
Q psy8929         131 RNNWMSAIKRTAAMSLLDDK  150 (160)
Q Consensus       131 ~~~Wi~al~~~~~~~~~~~~  150 (160)
                      +++||.+|+.++........
T Consensus        91 ~~~Wi~ai~~~~~~~~~~~~  110 (115)
T 2dn6_A           91 KQEWIQAIHSTIHLLKLGSS  110 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHhcCCC
Confidence            99999999999985444333

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.87  E-value=2.2e-21  Score=133.36  Aligned_cols=92  Identities=21%  Similarity=0.354  Sum_probs=73.1

Q ss_pred             cceeeeeeeceEEEEEE-eCCEEEEEeCCCCccCCccceeEEcCC-ceeee------ec----CCCCCceEEEEeCCCcE
Q psy8929          53 RNFGFQITTWTKHWFVL-RGCSLLYYRDPKAEESGVLDGVVALNN-VTSLS------EV----PVARNFGFQITTWDSKR  120 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL-~~~~L~yyk~~~~~~~~~~~g~I~L~~-~~~v~------~~----~~~~~~~F~i~t~~~r~  120 (160)
                      .|.|...+.|++||||| +++.|+||+++.+..+   .|.|.|.. +..+.      .+    ...++++|+|.++++|+
T Consensus        15 ~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~---~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F~I~~~~~r~   91 (130)
T 2d9v_A           15 WRQSSILRRWKRNWFALWLDGTLGYYHDETAQDE---EDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSR   91 (130)
T ss_dssp             EEECSSSCCEEEEEEEEETTTEEEEESSSSTTSE---EEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTEEEEEETTSCE
T ss_pred             EeecCccCCceeeEEEEccCCEEEEEeCCCCCCc---CceEecccceeEEeccccccccCCCCCCCcCcEEEEEeCCCCE
Confidence            34466778999999999 8999999999987665   78887763 22121      11    11467999999977799


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHhcccCC
Q psy8929         121 TILSAVTAGIRNNWMSAIKRTAAMSLL  147 (160)
Q Consensus       121 ~~l~a~s~~e~~~Wi~al~~~~~~~~~  147 (160)
                      |+|+|+|++|+++||.||+.++..+..
T Consensus        92 ~~l~A~s~~e~~~Wi~al~~a~~~~~~  118 (130)
T 2d9v_A           92 LHLCAETRDDAIAWKTALMEANSTPAP  118 (130)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHTCCCC
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999886543

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=8e-22  Score=133.50  Aligned_cols=81  Identities=21%  Similarity=0.294  Sum_probs=72.4

Q ss_pred             eeeeceEEEEEEeCC--EEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGC--SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWM  135 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~--~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi  135 (160)
                      ..+.|++|||||+++  .|+||+++.+..+   .|.|+|.++..+.. ...++++|.|.++ +|+|+|+|+|++|+++||
T Consensus        22 ~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~---~g~I~L~~~~~~~~-~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi   96 (119)
T 2dhk_A           22 PIRGWKSRWFFYDERKCQLYYSRTAQDANP---LDSIDLSSAVFDCK-ADAEEGIFEIKTP-SRVITLKAATKQAMLYWL   96 (119)
T ss_dssp             SSCCCEEEEEEEETTTTEEEEESSTTCCSC---SEEEEGGGCEEEEC-TTGGGCEEEEECS-SCCEEEECSSHHHHHHHH
T ss_pred             CCCCceeEEEEEECCccEEEEECCCCCccc---ccEEECCCCEEEec-CCCCCCEEEEEeC-CcEEEEECCCHHHHHHHH
Confidence            678999999999998  9999999988766   89999999996654 2346789999998 599999999999999999


Q ss_pred             HHHHHHhc
Q psy8929         136 SAIKRTAA  143 (160)
Q Consensus       136 ~al~~~~~  143 (160)
                      .+|+.++.
T Consensus        97 ~al~~~~~  104 (119)
T 2dhk_A           97 QQLQMKRW  104 (119)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999886

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.86  E-value=1.3e-21  Score=134.02  Aligned_cols=88  Identities=19%  Similarity=0.359  Sum_probs=72.0

Q ss_pred             ccee-eeeeeceEEEEEEe---CCEEEEEeCC----CCccCCccceeEEcCCceeeeecC----CCCCceEEEEeCCCcE
Q psy8929          53 RNFG-FQITTWTKHWFVLR---GCSLLYYRDP----KAEESGVLDGVVALNNVTSLSEVP----VARNFGFQITTWDSKR  120 (160)
Q Consensus        53 kk~g-~~~~~WkkrwfvL~---~~~L~yyk~~----~~~~~~~~~g~I~L~~~~~v~~~~----~~~~~~F~i~t~~~r~  120 (160)
                      .|.| ...+.|++|||||+   +..|+||+++    .+..+   .|.|+|..+..|....    ..++++|.|.++. |+
T Consensus        22 ~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~---~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t~~-r~   97 (126)
T 1v5p_A           22 DIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGA---VGSLQLTYISKVSIATPKQKPKTPFCFVINALS-QR   97 (126)
T ss_dssp             EEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCC---SEEEETTTCCEEEECCTTTSCSCSSEEEEECSS-CE
T ss_pred             EEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCcee---eEEEECCCccEEecCCcccCCCCCEEEEEECCC-EE
Confidence            3444 56899999999999   5677888984    44555   8999999977777654    2467999998875 99


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         121 TILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       121 ~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                      |+|+|+|++|+++||+||+.++..
T Consensus        98 y~l~A~s~~e~~~Wi~al~~a~~~  121 (126)
T 1v5p_A           98 YFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998764

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.86  E-value=1.7e-21  Score=132.29  Aligned_cols=92  Identities=18%  Similarity=0.318  Sum_probs=78.0

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCCH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVTA  128 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s~  128 (160)
                      .|+|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..|.....    .++++|.|.+++ ++|+|+|+|+
T Consensus        21 ~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~-r~~~l~a~s~   96 (125)
T 1eaz_A           21 VKQGAVMKNWKRRYFQLDENTIGYFKSELEKEP---LRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RTFYVQADSP   96 (125)
T ss_dssp             EEECTTTCCEEEEEEEECSSEEEEESSTTCSSC---SEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS-CEEEEECSSH
T ss_pred             EEeCCCCCCcceEEEEEeCCEEEEEcCCCCCcc---eeEEEcccceEEeeccccccCCcCCEEEEEeCC-cEEEEEcCCH
Confidence            344556789999999999999999999988776   89999999987766432    578999999975 9999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCC
Q psy8929         129 GIRNNWMSAIKRTAAMSLLD  148 (160)
Q Consensus       129 ~e~~~Wi~al~~~~~~~~~~  148 (160)
                      +|+++||.+|+.++......
T Consensus        97 ~e~~~W~~al~~~i~~~~~~  116 (125)
T 1eaz_A           97 EEMHSWIKAVSGAIVAQRGP  116 (125)
T ss_dssp             HHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHHHhccCC
Confidence            99999999999999755443

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.86  E-value=2.8e-21  Score=127.26  Aligned_cols=89  Identities=21%  Similarity=0.358  Sum_probs=72.4

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      .|.|...+.|++|||||+++.|+||+++.+... .+.|.|+|.++. |...+ ..+++|.|+++++++|+|+|+|++|++
T Consensus         6 ~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~-~~~g~i~L~~~~-v~~~~-~~~~~F~i~~~~~r~~~l~a~s~~e~~   82 (103)
T 3rcp_A            6 YKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCK-GSKGSIKMAVCE-IKVHS-ADNTRMELIIPGEQHFYMKAVNAAERQ   82 (103)
T ss_dssp             EEECCTTTCEEEEEEEEETTEEEEESSCC---C-CCSCEEEGGGCE-EECCT-TCSSEEEEEETTTEEEEEECSSHHHHH
T ss_pred             EEccCCCCCeeceEEEEECCEEEEEecCCcccC-CcccEEEeeeeE-EEEcC-CCCceEEEEeCCCCEEEEECCCHHHHH
Confidence            345566789999999999999999999986421 128999998877 44333 368899999986799999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8929         133 NWMSAIKRTAAM  144 (160)
Q Consensus       133 ~Wi~al~~~~~~  144 (160)
                      .||.+|+.++..
T Consensus        83 ~Wi~al~~a~~~   94 (103)
T 3rcp_A           83 RWLVALGSSKAS   94 (103)
T ss_dssp             HHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998863

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=6.5e-22  Score=134.04  Aligned_cols=88  Identities=19%  Similarity=0.369  Sum_probs=74.3

Q ss_pred             cceeeeeeeceEEEEEEe--CCEEEEEeCCCCc--cCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCH
Q psy8929          53 RNFGFQITTWTKHWFVLR--GCSLLYYRDPKAE--ESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTA  128 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~--~~~L~yyk~~~~~--~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~  128 (160)
                      .|.|...+.|++|||||+  ++.|+||+++.+.  .+   .|.|+|.++. |... ..++++|.|.++++++|+|+|+|+
T Consensus        15 ~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~---~g~I~L~~~~-v~~~-~~~~~~F~i~~~~~r~~~l~a~s~   89 (120)
T 2d9x_A           15 MKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKP---RGTLQLAGAV-ISPS-DEDSHTFTVNAASGEQYKLRATDA   89 (120)
T ss_dssp             EEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCC---SEEEECTTCC-EECC-SSSSSCEEECCSSSCCEEECCSSH
T ss_pred             EecCCCCCCceEEEEEEECCCCEEEEEecCcccCCCc---cceEEcceEE-EEec-CCCCCEEEEEcCCCCEEEEECCCH
Confidence            455667789999999999  5799999998764  34   8999999987 4443 346799999998779999999999


Q ss_pred             HHHHHHHHHHHHHhccc
Q psy8929         129 GIRNNWMSAIKRTAAMS  145 (160)
Q Consensus       129 ~e~~~Wi~al~~~~~~~  145 (160)
                      +|+++||.+|+.++...
T Consensus        90 ~e~~~Wi~al~~~~~~~  106 (120)
T 2d9x_A           90 KERQHWVSRLQICTQHH  106 (120)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998843

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.86  E-value=4.3e-21  Score=131.86  Aligned_cols=82  Identities=22%  Similarity=0.409  Sum_probs=69.4

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCC-----------CccCCccceeEEcCCceeeeecC-CCCCceEEEEeCCCcEEEEEcC
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPK-----------AEESGVLDGVVALNNVTSLSEVP-VARNFGFQITTWDSKRTILSAV  126 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~-----------~~~~~~~~g~I~L~~~~~v~~~~-~~~~~~F~i~t~~~r~~~l~a~  126 (160)
                      .++|++|||||+++.|+||+++.           +..+   .|.|+|.++......+ ..++++|+|.++++++|+|+|+
T Consensus        31 ~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p---~g~I~L~~~~v~~~~~~~kr~~~F~l~t~~~~~yl~qA~  107 (129)
T 2p0d_A           31 RKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRP---ESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSD  107 (129)
T ss_dssp             CCCCEEEEEEEESSEEEEESCC--------------CC---SEEEECTTCEEEECTTSCSSSSEEEEECTTSCEEEEECS
T ss_pred             CCCceEEEEEEeCCEEEEEcCcccccccccccccCCCC---ccEEEeCCcEEEECCCCCCCCcEEEEEcCCCCEEEEECC
Confidence            38999999999999999999995           3344   8999999998433322 2578999999998889999999


Q ss_pred             CHHHHHHHHHHHHHHhc
Q psy8929         127 TAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       127 s~~e~~~Wi~al~~~~~  143 (160)
                      |++||++||.+|+.+|.
T Consensus       108 s~~e~~~Wi~aI~~~i~  124 (129)
T 2p0d_A          108 HETELRAWHRALRTVIE  124 (129)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999999986

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.86  E-value=4.9e-21  Score=136.69  Aligned_cols=86  Identities=16%  Similarity=0.300  Sum_probs=72.9

Q ss_pred             eeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-------CCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          57 FQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-------~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      +..++|++|||||+++.|+||+++.+...  +.|.|+|..+..|+.+..       ..+++|+|++++ |+|||+|+|++
T Consensus        31 ~~~knWKkRwFVL~~~~L~Yyk~~~~~~~--~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~~-rt~~l~A~s~~  107 (164)
T 2lul_A           31 TSPLNYKERLFVLTKSMLTYYEGRAEKKY--RKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDA-NTLYIFAPSPQ  107 (164)
T ss_dssp             SCCCCEEEEEEEEESSEEEEECCCSSSCC--CCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECSS-CEEEEECSSHH
T ss_pred             CCCCCceeEEEEEECCEEEEEeccCcccc--cccEEEEeeeEEEEeccccccCcccccceeEEEecCC-cEEEEECCCHH
Confidence            34578999999999999999998865432  279999999987766543       356899999986 99999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q psy8929         130 IRNNWMSAIKRTAAMS  145 (160)
Q Consensus       130 e~~~Wi~al~~~~~~~  145 (160)
                      |+++||+||+++|...
T Consensus       108 e~~~Wi~aL~~~i~~n  123 (164)
T 2lul_A          108 SRDLWVKKLKEEIKNN  123 (164)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHC
Confidence            9999999999999743

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.86  E-value=5.2e-21  Score=126.93  Aligned_cols=87  Identities=28%  Similarity=0.377  Sum_probs=72.5

Q ss_pred             cceeeeeeeceEEEEEEeCC--EEEEEeCCCCccCCccceeEEcCCceeeeecCC------CCCceEEEEeCCCcEEEEE
Q psy8929          53 RNFGFQITTWTKHWFVLRGC--SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV------ARNFGFQITTWDSKRTILS  124 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~--~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~------~~~~~F~i~t~~~r~~~l~  124 (160)
                      .|.|...+.|++|||||.++  .|+||+++.+..+   .|.|+|.++..+.....      .++++|.|.++++++|+|+
T Consensus        14 ~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~---~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~   90 (109)
T 2i5f_A           14 LKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQ   90 (109)
T ss_dssp             EEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSC---SEEEECTTCEEEEECC--------CCSEEEEECTTCCEEEEE
T ss_pred             EEcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCc---cEEEECCCCEEEEccCCcccccCCCceEEEEEeCCCCEEEEE
Confidence            34455678999999999986  9999999987776   89999999874332221      2789999999877889999


Q ss_pred             cCCHHHHHHHHHHHHHHh
Q psy8929         125 AVTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~~~  142 (160)
                      |+|++|+++||.+|+.++
T Consensus        91 a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           91 AATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            999999999999999986

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.86  E-value=7.4e-21  Score=130.03  Aligned_cols=90  Identities=27%  Similarity=0.361  Sum_probs=75.0

Q ss_pred             cceeeeeeeceEEEEEEeCC--EEEEEeCCCCccCCccceeEEcCCceeeeecCC------CCCceEEEEeCCCcEEEEE
Q psy8929          53 RNFGFQITTWTKHWFVLRGC--SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV------ARNFGFQITTWDSKRTILS  124 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~--~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~------~~~~~F~i~t~~~r~~~l~  124 (160)
                      .|.|...+.|++|||||.++  .|+||+++.+..+   .|.|+|.++..+.....      .++++|.|.++++++|+|+
T Consensus        25 ~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~---~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~  101 (129)
T 1x05_A           25 LKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQ  101 (129)
T ss_dssp             EECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSC---SEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTTCCCCEEE
T ss_pred             EecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcc---eeEEEccCCEEEEccCCccccccCCCeEEEEEcCCCCEEEEE
Confidence            44566778999999999975  8999999877776   89999999884332221      2689999999877889999


Q ss_pred             cCCHHHHHHHHHHHHHHhccc
Q psy8929         125 AVTAGIRNNWMSAIKRTAAMS  145 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~~~~~~  145 (160)
                      |+|++|+++||.+|+.++...
T Consensus       102 a~s~~e~~~Wi~al~~~~~~~  122 (129)
T 1x05_A          102 AATPKERTEWIKAIQMASRTG  122 (129)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHHHHcc
Confidence            999999999999999998743

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.85  E-value=1.8e-21  Score=126.27  Aligned_cols=86  Identities=23%  Similarity=0.415  Sum_probs=72.3

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      .|.|...++|++|||||+++.|+||+++.+... .+.|.|+|.++..+..  ...+++|.|.+++ ++|+|+|+|++|++
T Consensus         8 ~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~-~~~~~i~l~~~~~~~~--~~~~~~F~i~~~~-r~~~l~A~s~~e~~   83 (94)
T 2rsg_A            8 SKWTNYIHGWQDRWVVLKNNALSYYKSEDETEY-GCRGSICLSKAVITPH--DFDECRFDISVND-SVWYLRAQDPDHRQ   83 (94)
T ss_dssp             EEESSSTTCEEEEEEEEETTEEEEESSTTGGGT-CCSEEEETTTCEEEEC--SSCSSEEEEEETT-EEEEEECCSSCCTH
T ss_pred             EEeCCCCCCceEEEEEEECCEEEEEEecccccc-cceeeEecceeeeecC--cccceeEEEEeCC-eEEEEECCCHHHHH
Confidence            455667889999999999999999998877543 2389999999874332  3467999999985 99999999999999


Q ss_pred             HHHHHHHHHh
Q psy8929         133 NWMSAIKRTA  142 (160)
Q Consensus       133 ~Wi~al~~~~  142 (160)
                      +||.||++|.
T Consensus        84 ~Wi~aLq~Ak   93 (94)
T 2rsg_A           84 QWIDAIEQHK   93 (94)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhc
Confidence            9999999874

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.85  E-value=8.3e-21  Score=127.42  Aligned_cols=89  Identities=24%  Similarity=0.433  Sum_probs=75.5

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC---CCCCceEEEEeC-------CCcEEE
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP---VARNFGFQITTW-------DSKRTI  122 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~---~~~~~~F~i~t~-------~~r~~~  122 (160)
                      .|+|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+...+   ..++++|+|.++       ..++|+
T Consensus        15 ~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~   91 (118)
T 1v89_A           15 KKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKP---QGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYV   91 (118)
T ss_dssp             EEECSSSSCEEEEEEEEETTEEEEESSSSCCSC---SEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEE
T ss_pred             EecCCCCCCccEEEEEEECCEEEEEeCCCCCCc---eEEEECCCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEE
Confidence            344556789999999999999999999988776   8999999998554332   256899999983       468999


Q ss_pred             EEcCCHHHHHHHHHHHHHHhcc
Q psy8929         123 LSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       123 l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                      |+|+|++|+++||.+|+.++..
T Consensus        92 l~a~s~~e~~~Wi~al~~~~~~  113 (118)
T 1v89_A           92 LMASSQAEMEEWVKFLRRVAGS  113 (118)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHC
T ss_pred             EECCCHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999873

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.85  E-value=6.6e-21  Score=127.93  Aligned_cols=88  Identities=23%  Similarity=0.391  Sum_probs=74.9

Q ss_pred             cceeeeeeeceEEEEEEe--CCEEEEEeCCCCccCCccceeEEcCCceeeeecC--------CCCCceEEEEeCCCcEEE
Q psy8929          53 RNFGFQITTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP--------VARNFGFQITTWDSKRTI  122 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~--~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~--------~~~~~~F~i~t~~~r~~~  122 (160)
                      .|.|...+.|++|||||+  ++.|+||+++.+..+   .|.|+|.++..+....        ..++++|.|.+++ ++|+
T Consensus        15 ~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~---~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~~~-r~~~   90 (117)
T 1v5u_A           15 YKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTEC---KGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR-RVYN   90 (117)
T ss_dssp             EECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSC---CCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESS-CEEE
T ss_pred             EecCCCCCCceeeEEEEECCCCEEEEeecCCCCcc---ceEEEccCcEEEeecCccccccccCCCCeEEEEECCC-ceEE
Confidence            344556789999999999  889999999988776   8999999999776533        1356899999975 9999


Q ss_pred             EEcCCHHHHHHHHHHHHHHhcc
Q psy8929         123 LSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       123 l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                      |+|+|++|+++||.+|+.++..
T Consensus        91 l~a~s~~e~~~Wi~al~~~i~~  112 (117)
T 1v5u_A           91 FCAQDVPSAQQWVDRIQSCLSS  112 (117)
T ss_dssp             EECSSHHHHHHHHHHHHTTCCC
T ss_pred             EECCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999998863

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.85  E-value=5.6e-21  Score=129.45  Aligned_cols=86  Identities=27%  Similarity=0.472  Sum_probs=73.0

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC----CCCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP----VARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~----~~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ..+.|++|||||+++.|+||+++.+..+   .|.|+|.++. |....    ..++++|.|.++++++|+|+|+|++|++.
T Consensus        24 ~~~~WkkR~fvL~~~~L~yy~~~~~~~~---~g~i~l~~~~-v~~~~~~~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~   99 (123)
T 1upq_A           24 GLRLWKRRWFVLSGHCLFYYKDSREESV---LGSVLLPSYN-IRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRG   99 (123)
T ss_dssp             SSCCEEEEEEEEETTEEEEESSTTCCSC---CEEEEGGGCE-EEECCSSCTTSSSSEEEEECTTSCCEEEECSSHHHHHH
T ss_pred             CCCCceeEEEEEeCCEEEEECCCCCccc---ceEEECCCCE-EEECCCCccCCCcEEEEEECCCCeEEEEECCCHHHHHH
Confidence            5689999999999999999999988776   8999999988 44432    24789999999877999999999999999


Q ss_pred             HHHHHHHHhcccCC
Q psy8929         134 WMSAIKRTAAMSLL  147 (160)
Q Consensus       134 Wi~al~~~~~~~~~  147 (160)
                      ||.+|+.++.....
T Consensus       100 Wi~al~~a~~~~~~  113 (123)
T 1upq_A          100 WLRALGRASRAEGD  113 (123)
T ss_dssp             HHHHHHHHHC----
T ss_pred             HHHHHHHHHhcccC
Confidence            99999999975443

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.85  E-value=6.6e-21  Score=129.78  Aligned_cols=88  Identities=19%  Similarity=0.311  Sum_probs=77.3

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      .|.|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+...+. .++++|.|.+++ ++|+|+|+|++|+
T Consensus        25 ~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~-r~~~l~a~s~~e~  100 (126)
T 1fao_A           25 TKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEP---IRILDLTECSAVQFDYSQERVNCFCLVFPF-RTFYLCAKTGVEA  100 (126)
T ss_dssp             EEECSSSCCEEEEEEEEETTEEEEESSTTCSSC---SEEEEGGGCCEEEEECSSSSSSEEEEEETT-EEEEEECSSHHHH
T ss_pred             EEcCCCCCCcccEEEEEECCEEEEeCCCCCCCc---eeEEEccceEEEEecccCCCCCEEEEEeCC-cEEEEECCCHHHH
Confidence            345556789999999999999999999988776   89999999997666543 678999999985 9999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8929         132 NNWMSAIKRTAAM  144 (160)
Q Consensus       132 ~~Wi~al~~~~~~  144 (160)
                      +.||.+|+.++..
T Consensus       101 ~~Wi~al~~~i~~  113 (126)
T 1fao_A          101 DEWIKILRWKLSQ  113 (126)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.85  E-value=1e-20  Score=125.03  Aligned_cols=81  Identities=17%  Similarity=0.398  Sum_probs=71.3

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeec----CCCCCceEEEEeCCCcEEEEEcCCHHHHHHHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV----PVARNFGFQITTWDSKRTILSAVTAGIRNNWM  135 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~----~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi  135 (160)
                      +.|++|||||+++.|+||+++.+..+   .|.|+|.++..+...    ...++++|.|.++++++|+|+|+|++|++.||
T Consensus        21 ~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi   97 (108)
T 1u5d_A           21 SEWQKRWCVVSRGLFYYYANEKSKQP---KGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWV   97 (108)
T ss_dssp             EEEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHH
T ss_pred             cCceeeEEEEeCCEEEEecCCCCCCC---CEEEEecceEEEeCCccccccCCcceEEEEcCCCcEEEEECCCHHHHHHHH
Confidence            89999999999999999999988776   899999999943321    12567999999987799999999999999999


Q ss_pred             HHHHHHhc
Q psy8929         136 SAIKRTAA  143 (160)
Q Consensus       136 ~al~~~~~  143 (160)
                      .+|+.++.
T Consensus        98 ~ai~~~i~  105 (108)
T 1u5d_A           98 DQISFLLK  105 (108)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999885

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.85  E-value=1.3e-20  Score=128.15  Aligned_cols=89  Identities=21%  Similarity=0.449  Sum_probs=75.6

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCC--------------
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS--------------  118 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~--------------  118 (160)
                      .|.|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+...+..++++|+|.++++              
T Consensus        12 ~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~   88 (127)
T 1fgy_A           12 LKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADG   88 (127)
T ss_dssp             EEECSSSCCEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTS
T ss_pred             EEECCCCCCeEEEEEEEECCEEEEeCCCCCCCc---ceEEECCceEEEEccCCCCCceEEEecCCccccccccccccCCc
Confidence            344556789999999999999999999988776   899999999844433446889999998642              


Q ss_pred             -------cEEEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         119 -------KRTILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       119 -------r~~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                             |+|+|+|+|++|++.||.+|+.++..
T Consensus        89 ~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  121 (127)
T 1fgy_A           89 RVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             CEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ceecCCceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence                   69999999999999999999999873

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.85  E-value=9.1e-21  Score=132.89  Aligned_cols=84  Identities=19%  Similarity=0.436  Sum_probs=73.6

Q ss_pred             eeeeeceEEEEEEeCC-----EEEEEeCCC-CccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          57 FQITTWTKHWFVLRGC-----SLLYYRDPK-AEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~-----~L~yyk~~~-~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      ...+.|++|||||.++     .|.||+++. +..+   .|.|+|.+|..+......++++|.|.++++++|+|+|+|++|
T Consensus        35 ~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~---~g~I~L~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~A~s~~e  111 (150)
T 1wg7_A           35 VTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEP---KGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVE  111 (150)
T ss_dssp             HHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCC---SEEECTTTCCEECCCCSSCTTEEEEECSSSCEEEEECSSHHH
T ss_pred             ccccCeeEEEEEEecCCCCceEEEEECCCCCCCCc---CcEEecccCEEEecCCCCCceEEEEEeCCCcEEEEEeCCHHH
Confidence            3567999999999997     999999987 5555   899999999966544446889999999877999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8929         131 RNNWMSAIKRTAA  143 (160)
Q Consensus       131 ~~~Wi~al~~~~~  143 (160)
                      ++.||.+|+.++.
T Consensus       112 ~~~Wi~al~~ai~  124 (150)
T 1wg7_A          112 MEEWITILNKILQ  124 (150)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999986

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.8e-20  Score=125.84  Aligned_cols=83  Identities=27%  Similarity=0.525  Sum_probs=72.6

Q ss_pred             eeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC----CCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          57 FQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP----VARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~----~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      ...+.|++|||||+++.|+||+++.+..+   .|.|+|.++. |..+.    ..++++|+|.++++++|+|+|+|++|++
T Consensus        23 ~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~-v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~   98 (117)
T 2d9y_A           23 SGVKQWNKRWFVLVDRCLFYYKDEKEESI---LGSIPLLSFR-VAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQE   98 (117)
T ss_dssp             TSSSCEEEEEEEEETTEEEEESSTTCCSC---CEEEECSSCE-EEECCTTTTCCCSSEEEEECSSSCEEEEECSSHHHHH
T ss_pred             CCCCCceEEEEEECCCEEEEECCCCCCCc---CCEEEeCCeE-EEEcCccccCCCccEEEEEcCCCcEEEEEcCCHHHHH
Confidence            35789999999999999999999988776   8999999998 44332    2578999998776799999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8929         133 NWMSAIKRTAA  143 (160)
Q Consensus       133 ~Wi~al~~~~~  143 (160)
                      +||.+|+.++.
T Consensus        99 ~Wi~al~~~~~  109 (117)
T 2d9y_A           99 AWIQAMGEAAR  109 (117)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHHh
Confidence            99999999886

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=127.23  Aligned_cols=84  Identities=26%  Similarity=0.525  Sum_probs=73.2

Q ss_pred             eeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC----CCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          57 FQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP----VARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~----~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      ...+.|++|||||+++.|+||+++.+..+   .|.|+|.++. |..+.    ..++++|.|.++++++|+|+|+|++|++
T Consensus        34 ~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~-v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~  109 (122)
T 2yry_A           34 SGVKQWNKRWFVLVDRCLFYYKDEKEESI---LGSIPLLSFR-VAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQE  109 (122)
T ss_dssp             SSSCCEEEEEEEEETTEEEEESSTTCCSC---CEEEESTTCC-CEECCTTCSCSSSSEEEEECSSSCEEEEECSSHHHHH
T ss_pred             CCCCCcEEEEEEEeCCEEEEECCCCCCCc---ccEEEcCCCE-EEEcCccccCCcccEEEEecCCCcEEEEEcCCHHHHH
Confidence            35789999999999999999999988776   8999999988 44432    2578999998876799999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8929         133 NWMSAIKRTAAM  144 (160)
Q Consensus       133 ~Wi~al~~~~~~  144 (160)
                      +||.+|+.++..
T Consensus       110 ~Wi~al~~a~~~  121 (122)
T 2yry_A          110 AWIQAMGEAARV  121 (122)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhc
Confidence            999999998863

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.84  E-value=1e-20  Score=126.94  Aligned_cols=82  Identities=13%  Similarity=0.202  Sum_probs=70.3

Q ss_pred             eeeceEEEEEEeCC---EEEEEeCCCCccCCccceeEEcCCceeee--ecCC-CCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          59 ITTWTKHWFVLRGC---SLLYYRDPKAEESGVLDGVVALNNVTSLS--EVPV-ARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        59 ~~~WkkrwfvL~~~---~L~yyk~~~~~~~~~~~g~I~L~~~~~v~--~~~~-~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      .+.|++|||||+++   .|+||+++++..+   .|.|+|.+++...  +.+. .++++|+|.+++ ++|+|+|+|+++|+
T Consensus        20 ~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p---~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~~-~~y~f~A~s~e~~~   95 (112)
T 2coc_A           20 GETWSEVWAAIPMSDPQVLHLQGGSQDGRL---PRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLSASSAELQQ   95 (112)
T ss_dssp             SSCEEEEEEECCTTCTTCEEEECCTTCSSS---CSEECGGGCEEECCCSSSCCSSSEEEEEEETT-EEEEEEESSHHHHH
T ss_pred             CCCceEEEEEEECCCccEEEEECCCCccCc---ceEEEcCCCEEEecCcccccCCCCEEEEecCC-eEEEEEcCCHHHHH
Confidence            68899999999985   7999999998777   8999999998542  2222 478999999874 89999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8929         133 NWMSAIKRTAAM  144 (160)
Q Consensus       133 ~Wi~al~~~~~~  144 (160)
                      +||.+|+.|+..
T Consensus        96 ~Wl~al~~A~~~  107 (112)
T 2coc_A           96 QWLETLSTAAHS  107 (112)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998763

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.84  E-value=5.4e-21  Score=127.71  Aligned_cols=88  Identities=20%  Similarity=0.349  Sum_probs=71.5

Q ss_pred             cceeeeeeeceEEEEEE-eCCEEEEEeCCCCccCCccceeEEcCCce-------eeee--cCC--CCCceEEEEeCCCcE
Q psy8929          53 RNFGFQITTWTKHWFVL-RGCSLLYYRDPKAEESGVLDGVVALNNVT-------SLSE--VPV--ARNFGFQITTWDSKR  120 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL-~~~~L~yyk~~~~~~~~~~~g~I~L~~~~-------~v~~--~~~--~~~~~F~i~t~~~r~  120 (160)
                      .|+|...+.|++||||| .++.|+||+++.+..+   .|.|+|....       .|..  .+.  .++++|.|.++++++
T Consensus        12 ~K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~---~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~i~~~~~r~   88 (112)
T 3aj4_A           12 LRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNI---EDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKT   88 (112)
T ss_dssp             EEECSSSCCEEEEEEEECTTSEEEEESSTTCCSE---EEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEEEEETTSCE
T ss_pred             EeeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCC---CccccccccceeecccccccccCCCCCCCcCcEEEEEecCCcE
Confidence            44556778999999999 8899999999988665   7888887655       2332  222  236899999877799


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         121 TILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       121 ~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      |+|+|+|++|+++||.||+.+..
T Consensus        89 ~~l~a~s~~e~~~Wi~al~~a~~  111 (112)
T 3aj4_A           89 ISLCAESTDDCLAWKFTLQDSRT  111 (112)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999863

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.84  E-value=5.6e-21  Score=137.03  Aligned_cols=83  Identities=19%  Similarity=0.360  Sum_probs=70.1

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCC----CCccCCccceeEEcCCceeeeec---CC---CCC-------------------
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDP----KAEESGVLDGVVALNNVTSLSEV---PV---ARN-------------------  108 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~----~~~~~~~~~g~I~L~~~~~v~~~---~~---~~~-------------------  108 (160)
                      ..++||+|||||+++.|+||+++    .+..+   .|.|+|.++..|+.+   +.   .++                   
T Consensus        20 ~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~---~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   96 (169)
T 1btk_A           20 SPLNFKKCLFLLTVHKLSYYEYDFERGRRGSK---KGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIER   96 (169)
T ss_dssp             CCCCEEEEEEEECSSEEEEEEEETTTTEEEEE---EEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHC
T ss_pred             ccCCCceEEEEEcCCEEEEEecCCccCCCCce---eeEEECcceEEEEeccCCCCcchhcccccccCccccccccccccc
Confidence            35789999999999999999983    44444   899999999877665   22   122                   


Q ss_pred             --ceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         109 --FGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       109 --~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                        ++|+|++++ ++|||+|+|++|+++||++|+.++..
T Consensus        97 ~~~~F~I~t~~-rt~yl~A~s~~E~~eWi~aI~~~i~~  133 (169)
T 1btk_A           97 FPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLKNVIRY  133 (169)
T ss_dssp             CCEEEEEEETT-CCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred             ccccEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence              899999986 89999999999999999999999873

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.84  E-value=4.9e-21  Score=130.72  Aligned_cols=91  Identities=14%  Similarity=0.268  Sum_probs=72.4

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCc-----cC-CccceeEEcCCceeeeecC---CCCCceEEEEeCC--CcEE
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAE-----ES-GVLDGVVALNNVTSLSEVP---VARNFGFQITTWD--SKRT  121 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~-----~~-~~~~g~I~L~~~~~v~~~~---~~~~~~F~i~t~~--~r~~  121 (160)
                      .|.|...++|++|||||+++.|+||+++...     .. ....|.|+|.+|.. ....   ..++++|+|.+++  .++|
T Consensus        19 ~K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v-~~~~~~~~~k~~~F~I~~~~~~~~~~   97 (124)
T 2w2x_D           19 YMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNV-VKAPQGKNQKSFVFILEPKQQGDPPV   97 (124)
T ss_dssp             EEEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEE-EECTTCBTTBSEEEEEEECC--CCCE
T ss_pred             EEECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEE-EEccCCcCCCCEEEEEECCCCCCceE
Confidence            4456678999999999999999999985331     11 12279999999994 4443   3578999999865  3789


Q ss_pred             EEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         122 ILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       122 ~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                      +|+|+|++|+++||.||+.++..
T Consensus        98 ~~~A~s~ee~~~Wi~ai~~a~~~  120 (124)
T 2w2x_D           98 EFATDKVEELFEWFQSIREITWK  120 (124)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHC-
T ss_pred             EEEECCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998863

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.84  E-value=1.1e-20  Score=129.08  Aligned_cols=89  Identities=24%  Similarity=0.364  Sum_probs=73.0

Q ss_pred             cceeeeeeeceEEEEEEe--CCEEEEEeCC-CCccCCccceeEEcCCceeeeecCCC----------CCceEEEEeCCCc
Q psy8929          53 RNFGFQITTWTKHWFVLR--GCSLLYYRDP-KAEESGVLDGVVALNNVTSLSEVPVA----------RNFGFQITTWDSK  119 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~--~~~L~yyk~~-~~~~~~~~~g~I~L~~~~~v~~~~~~----------~~~~F~i~t~~~r  119 (160)
                      .|.|...+.|++|||||+  +..|+||+++ .+..+   .|.|+|.++.. ..+...          ++++|+|.+++++
T Consensus        25 ~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~---~g~i~L~~~~v-~~~~~~~~p~~~~~~~~~~~F~I~~~~~r  100 (129)
T 1x1g_A           25 AKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRP---VGGFSLRGSLV-SALEDNGVPTGVKGNVQGNLFKVITKDDT  100 (129)
T ss_dssp             EEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSC---SCCEESTTCCC-EECCSSSSCSSCSSCCCSSCEEECCTTCC
T ss_pred             EEECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCcc---ceEEECcCCEE-EEeCCCCCcccccCCCCCceEEEEcCCCC
Confidence            445656899999999999  4799999987 55555   89999999874 332221          6799999998778


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHhccc
Q psy8929         120 RTILSAVTAGIRNNWMSAIKRTAAMS  145 (160)
Q Consensus       120 ~~~l~a~s~~e~~~Wi~al~~~~~~~  145 (160)
                      +|+|+|+|++|+++||.+|+.++..+
T Consensus       101 ~~~l~a~s~~e~~~Wi~al~~~~~~~  126 (129)
T 1x1g_A          101 HYYIQASSKAERAEWIEAIKKLTSGP  126 (129)
T ss_dssp             CEEECCSSHHHHHHHHHHHHHHSSSS
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            89999999999999999999998643

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.84  E-value=2.5e-20  Score=127.08  Aligned_cols=82  Identities=27%  Similarity=0.515  Sum_probs=72.2

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC----CCCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP----VARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~----~~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ..+.|++|||||+++.|+||+++.+..+   .|.|+|.++. |....    ..++++|+|.++++++|+|+|+|++|+++
T Consensus        34 ~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~-v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~  109 (128)
T 2dkp_A           34 GMKLWKKRWFVLSDLCLFYYRDEKEEGI---LGSILLPSFQ-IALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMEL  109 (128)
T ss_dssp             SSCCEEEEEEEEETTEEEEESSTTCCSE---EEEECGGGSE-EEECCGGGCCSSCSEEEEECSSSCCEEEECSSHHHHHH
T ss_pred             CCCCceeEEEEEeCCEEEEECCCCCccc---ceEEEcCceE-EEEcCCcccCCCCeEEEEEcCCCCEEEEEcCCHHHHHH
Confidence            6789999999999999999999988776   8999999987 44332    25789999999877999999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||.+|+.++.
T Consensus       110 Wi~al~~a~~  119 (128)
T 2dkp_A          110 WMKAMLDAAL  119 (128)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.83  E-value=3e-20  Score=123.37  Aligned_cols=83  Identities=17%  Similarity=0.362  Sum_probs=68.6

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC-CCCCceEEEEeCCCcEEEEEcCCHHHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP-VARNFGFQITTWDSKRTILSAVTAGIRNNWMS  136 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~-~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~  136 (160)
                      ..+.|++|||||+++.|+||+++.+..  .+.+.|+|.++. |...+ ..++++|+|.+++.++|+|+|+|++|++.||.
T Consensus        18 ~~k~Wk~RwfvL~~~~L~yyk~~~~~~--~~~~~i~l~~~~-v~~~~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~   94 (107)
T 2cof_A           18 VNSQWKSRWCSVRDNHLHFYQDRNRSK--VAQQPLSLVGCE-VVPDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLG   94 (107)
T ss_dssp             ETTEEEEEEEEECSSCEEEECSSTTCS--EEEEEECTTTCE-EECCCBTTBSCEEEEEETTEEEEEEECSSHHHHHHHHH
T ss_pred             cCCCcceEEEEEECCEEEEEeCCcccC--CCeeEEeccceE-EEECCCCCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHH
Confidence            668999999999999999999987632  125677777775 44333 35789999999866999999999999999999


Q ss_pred             HHHHHhc
Q psy8929         137 AIKRTAA  143 (160)
Q Consensus       137 al~~~~~  143 (160)
                      +|+.++.
T Consensus        95 al~~~~~  101 (107)
T 2cof_A           95 LLLSESG  101 (107)
T ss_dssp             HHHHHSS
T ss_pred             HHHHHHc
Confidence            9999876

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.83  E-value=5e-20  Score=125.07  Aligned_cols=91  Identities=13%  Similarity=0.158  Sum_probs=71.6

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-C--------CCceEEEEeCC------
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-A--------RNFGFQITTWD------  117 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~--------~~~~F~i~t~~------  117 (160)
                      .|+|...++|++|||||+++.|+||++++......+.|.|.|.+|+....... .        +++.|.|...+      
T Consensus        13 ~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~   92 (120)
T 4a6h_A           13 ERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRR   92 (120)
T ss_dssp             EEEETTTTEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCCC---------CCEEEEEESSSSSSCT
T ss_pred             EEcCCCCCCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCCCEEEEcccccccccccccCCCcEEEEEeCCCCcccC
Confidence            44555678999999999999999999886322112389999999995443332 2        67899999765      


Q ss_pred             CcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         118 SKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       118 ~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      ++.|+|+|+|.+||++||.+|+.++.
T Consensus        93 ~~~y~f~A~s~~e~~~Wv~aI~~~~~  118 (120)
T 4a6h_A           93 GHNWVFKADSYESMMSWFDNLKILTS  118 (120)
T ss_dssp             TCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            25999999999999999999999875

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.83  E-value=2e-20  Score=128.63  Aligned_cols=89  Identities=27%  Similarity=0.411  Sum_probs=71.0

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCcee--eeecCC---CCCceEEEEe--CCC----------
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS--LSEVPV---ARNFGFQITT--WDS----------  118 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~--v~~~~~---~~~~~F~i~t--~~~----------  118 (160)
                      |...+.|++|||||+++.|+||+++.+.....+.|.|+|.++..  |...+.   .++++|.|.+  +..          
T Consensus        17 ~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~p~~~~~~~~~~~~   96 (134)
T 2y7b_A           17 VSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQ   96 (134)
T ss_dssp             ETTEEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEEECCTTCCCCSSEE
T ss_pred             CCCCCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCccccccccchhhccCCCEEEEEecCCCccccccccccc
Confidence            55678999999999999999999665421122389999999874  555432   5789999987  321          


Q ss_pred             -------cEEEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         119 -------KRTILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       119 -------r~~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                             ++|+|+|+|++|++.||.+|+.++..
T Consensus        97 ~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~  129 (134)
T 2y7b_A           97 CRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD  129 (134)
T ss_dssp             EETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                   47999999999999999999998863

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.83  E-value=4.6e-20  Score=125.32  Aligned_cols=84  Identities=25%  Similarity=0.360  Sum_probs=69.5

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccCC---ccceeEEcCCceeeeecC--CCCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEESG---VLDGVVALNNVTSLSEVP--VARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~~---~~~g~I~L~~~~~v~~~~--~~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      .+.|++|||||+++.|+||+++.+...+   .....|+|.++. +....  ..++|+|.|.++++++|+|+|+|++||++
T Consensus        29 ~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~-~~~~~~~~~r~~~F~i~~~~~~~~~f~A~s~~e~~~  107 (123)
T 1wjm_A           29 NRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQ-GSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSS  107 (123)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCE-EEECTTCSSCSSEEEEECSSSCEEEEECSSHHHHHH
T ss_pred             CCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcE-EeecccccCCCCEEEEEEcCCcEEEEECCCHHHHHH
Confidence            7899999999999999999998774321   114568888776 33332  36899999999888999999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||.+|+.++.
T Consensus       108 Wi~ai~~~~~  117 (123)
T 1wjm_A          108 WLRVVNAAIA  117 (123)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999987

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.82  E-value=1e-19  Score=127.36  Aligned_cols=83  Identities=18%  Similarity=0.318  Sum_probs=71.7

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeec----CCCCCceEEEEeCCCcEEEEEcCCHHHHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV----PVARNFGFQITTWDSKRTILSAVTAGIRNNW  134 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~----~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~W  134 (160)
                      .+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+...    ...++++|.|.++++++|+|+|+|++|++.|
T Consensus        34 ~k~WkkR~fvL~~~~L~yyk~~~~~~~---~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~W  110 (148)
T 1u5f_A           34 GFEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEW  110 (148)
T ss_dssp             SCSEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEECTTSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHH
T ss_pred             CCCceeEEEEEECCEEEEEcCCCCccc---ceEEEcCCcEEEECCCcccCCCCccEEEEECCCCcEEEEECCCHHHHHHH
Confidence            469999999999999999999988766   899999999844321    2245799999998779999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8929         135 MSAIKRTAAM  144 (160)
Q Consensus       135 i~al~~~~~~  144 (160)
                      |.+|+.++..
T Consensus       111 i~al~~~i~~  120 (148)
T 1u5f_A          111 VQQLKFILQD  120 (148)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHHHH
Confidence            9999999873

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.82  E-value=5.9e-20  Score=136.06  Aligned_cols=83  Identities=18%  Similarity=0.318  Sum_probs=73.3

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeec----CCCCCceEEEEeCCCcEEEEEcCCHHHHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV----PVARNFGFQITTWDSKRTILSAVTAGIRNNW  134 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~----~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~W  134 (160)
                      .+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+...    ...++++|+|.++++|+|+|+|+|++|+..|
T Consensus       123 ~k~WkkRwfVL~~~~L~Yyk~~~~~~p---~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~W  199 (211)
T 1u5e_A          123 GFEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEW  199 (211)
T ss_dssp             TCCCEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHH
T ss_pred             CCCcEeEEEEEECCEEEEEcCCCCccc---eEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHH
Confidence            569999999999999999999998776   899999999976532    2256799999998779999999999999999


Q ss_pred             HHHHHHHhcc
Q psy8929         135 MSAIKRTAAM  144 (160)
Q Consensus       135 i~al~~~~~~  144 (160)
                      |.+|+.++..
T Consensus       200 i~aL~~ai~~  209 (211)
T 1u5e_A          200 VQQLKFILQD  209 (211)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999999863

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=7.3e-20  Score=122.87  Aligned_cols=84  Identities=10%  Similarity=0.147  Sum_probs=69.4

Q ss_pred             ceeeee-eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          54 NFGFQI-TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        54 k~g~~~-~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      |+|... +.|++|||||+++.|+||+++.+..    .+.|.|..+. +... ..++++|+|.+++ ++|+|+|+|++|++
T Consensus        18 K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~----~~~i~l~~~~-v~~~-~~~~~~F~I~~~~-r~~~l~a~s~~e~~   90 (114)
T 2da0_A           18 KKSDGIRKVWQRRKCSVKNGILTISHATSNRQ----PAKLNLLTCQ-VKPN-AEDKKSFDLISHN-RTYHFQAEDEQDYV   90 (114)
T ss_dssp             EECSSSCCCEEEEEEEEETTEEEECCSSCCSC----CEEEETTTSE-EEEC-SSSSSCEEEEETT-EEEEEECSSHHHHH
T ss_pred             EeCCCCCCCceeEEEEEeCCEEEEEcCCCCCC----CCEEEeeeeE-EEEC-CCCCCEEEEEcCC-cEEEEEcCCHHHHH
Confidence            334334 8999999999999999999987655    4778887776 4433 3467899999985 99999999999999


Q ss_pred             HHHHHHHHHhcc
Q psy8929         133 NWMSAIKRTAAM  144 (160)
Q Consensus       133 ~Wi~al~~~~~~  144 (160)
                      +||.||+.++..
T Consensus        91 ~Wi~al~~~~~~  102 (114)
T 2da0_A           91 AWISVLTNSKEE  102 (114)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.82  E-value=5.8e-20  Score=121.23  Aligned_cols=85  Identities=16%  Similarity=0.270  Sum_probs=67.7

Q ss_pred             eeeeeceEEEEEEeCCEEEEEeCCCCcc---CCccceeEEcCCceeeee-cCCCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          57 FQITTWTKHWFVLRGCSLLYYRDPKAEE---SGVLDGVVALNNVTSLSE-VPVARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        57 ~~~~~WkkrwfvL~~~~L~yyk~~~~~~---~~~~~g~I~L~~~~~v~~-~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      ...++|++|||||+++.|+||+++.+..   .....+.|+|.++..... ....++++|+|.++++++|+|+|+|++|++
T Consensus        18 ~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~A~s~~e~~   97 (106)
T 1btn_A           18 ASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMN   97 (106)
T ss_dssp             CSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTSCEEEEECSSHHHHH
T ss_pred             CCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEcccccCCccEEEEEecCCCEEEEECCCHHHHH
Confidence            4568999999999999999999887421   101267899988773222 223678999999988899999999999999


Q ss_pred             HHHHHHHHH
Q psy8929         133 NWMSAIKRT  141 (160)
Q Consensus       133 ~Wi~al~~~  141 (160)
                      +||.+|+.|
T Consensus        98 ~Wi~ai~~A  106 (106)
T 1btn_A           98 TWIQAISSA  106 (106)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999999874

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.82  E-value=1.4e-19  Score=123.45  Aligned_cols=85  Identities=25%  Similarity=0.477  Sum_probs=71.0

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCC---------ccceeEEcCCceeeeecC---CCCCceEEEEeCCCcEEEEEc
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESG---------VLDGVVALNNVTSLSEVP---VARNFGFQITTWDSKRTILSA  125 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~---------~~~g~I~L~~~~~v~~~~---~~~~~~F~i~t~~~r~~~l~a  125 (160)
                      ..++|+++||||+++.|+||+++.+...+         .+.+.|+|.++. +...+   ..++++|+|.+++++.|+|+|
T Consensus        27 ~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~-v~~~~~d~~krk~vF~l~t~~~~~ylfqA  105 (124)
T 3pp2_A           27 RKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGAT-LSWAPKDKSSRKNVLELRSRDGSEYLIQH  105 (124)
T ss_dssp             SSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCE-EEECCGGGCSSSSEEEEECTTSCEEEEEC
T ss_pred             CCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCE-EEecccccCCCceEEEEECCCCCEEEEEC
Confidence            34699999999999999999998765311         247999999988 44432   268999999998889999999


Q ss_pred             CCHHHHHHHHHHHHHHhc
Q psy8929         126 VTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       126 ~s~~e~~~Wi~al~~~~~  143 (160)
                      ++++||++||.+|+.+|+
T Consensus       106 ~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A          106 DSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             SCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999999985

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.81  E-value=8.5e-20  Score=130.31  Aligned_cols=87  Identities=24%  Similarity=0.402  Sum_probs=61.4

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCC--ccCCccceeEEcCCcee-e--eecCCCCCceEEEEeCCCcEEEEEcCC
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKA--EESGVLDGVVALNNVTS-L--SEVPVARNFGFQITTWDSKRTILSAVT  127 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~--~~~~~~~g~I~L~~~~~-v--~~~~~~~~~~F~i~t~~~r~~~l~a~s  127 (160)
                      +|.|...+.|++|||||+++.|+||+++.+  ..+   .|.|+|..... +  ......++++|+|.+++ ++|+|+|+|
T Consensus        20 kK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~---~g~i~l~~~~~~~~~~~~~~~~~~~F~I~t~~-r~~~l~A~s   95 (168)
T 2j59_M           20 KRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPS---EEEQPISVNACLIDISYSETKRKNVFRLTTSD-CECLFQAED   95 (168)
T ss_dssp             --------CCEEEEEEEETTEEEEESCTTCC-----------CEECSSCEEEECSSSCSCSSEEEEECSS-CEEEEECSS
T ss_pred             cccCCCCCCceEEEEEEeCCEEEEEECCccccccc---CCceEecccceEEEeccccCCCCCEEEEEeCC-ceEEEEcCC
Confidence            466778899999999999999999999966  344   68888777332 2  22223678999999986 899999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy8929         128 AGIRNNWMSAIKRTAA  143 (160)
Q Consensus       128 ~~e~~~Wi~al~~~~~  143 (160)
                      ++|+++||.+|+.++.
T Consensus        96 ~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           96 RDDMLAWIKTIQESSN  111 (168)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999876

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.81  E-value=4e-19  Score=121.07  Aligned_cols=84  Identities=18%  Similarity=0.257  Sum_probs=72.1

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCC---------CccCCccceeEEcCCceeeeecCC-CCCceEEEEeC-CCcEEEEEcCC
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPK---------AEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTW-DSKRTILSAVT  127 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~---------~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~-~~r~~~l~a~s  127 (160)
                      .++|++|||||+++.|+||+...         +.+|   .|.|+|.++. |+..+. .++++|+|.++ .|..|.|+|+|
T Consensus        21 ~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P---~~~i~L~g~~-V~~~e~~~~~~~F~L~~~~~G~~Y~fqA~s   96 (126)
T 2dtc_A           21 LSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTP---GKKVSIVGWM-VQLPDDPEHPDIFQLNNPDKGNVYKFQTGS   96 (126)
T ss_dssp             SCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSC---SEEEECTTCE-EECCCCTTSTTEEEEECTTSCSEEEEECSS
T ss_pred             ccCcccEEEEEeCCEEEEEcccccccccccccccCC---CceEEeCCCE-EEecCCCCCCCEEEEeeCCCCCEEEEeCCC
Confidence            68999999999999999999764         3344   8999999999 454444 58899999987 67899999999


Q ss_pred             HHHHHHHHHHHHHHhcccC
Q psy8929         128 AGIRNNWMSAIKRTAAMSL  146 (160)
Q Consensus       128 ~~e~~~Wi~al~~~~~~~~  146 (160)
                      +++++.||+||+.++....
T Consensus        97 ~~~~~~W~~ai~~a~~~~~  115 (126)
T 2dtc_A           97 RFHAILWHKHLDDACKSSR  115 (126)
T ss_dssp             HHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            9999999999999997443

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.80  E-value=3.7e-20  Score=125.98  Aligned_cols=88  Identities=22%  Similarity=0.348  Sum_probs=71.7

Q ss_pred             cceeeeeeeceEEEEEEeC-CEEEEEeCCCCccCCccceeEEcCCceee----eecCCCCCceEEEEe---CCCcEEEEE
Q psy8929          53 RNFGFQITTWTKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSL----SEVPVARNFGFQITT---WDSKRTILS  124 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~-~~L~yyk~~~~~~~~~~~g~I~L~~~~~v----~~~~~~~~~~F~i~t---~~~r~~~l~  124 (160)
                      .|.|...+.|++|||||++ +.|+||+++.+..+   .|.|+|..+..+    ...+..++++|+|.+   ...++|+|+
T Consensus        15 ~K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~---~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~~~~~~~   91 (125)
T 1unq_A           15 HKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVD---QREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFH   91 (125)
T ss_dssp             EEECSSSCCEEEEEEEEETTSEEEEESSCCCSHH---HHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEE
T ss_pred             EeccCCccCccCcEEEEecCCEEEEEeCCCCCCC---CceeEccceeEEeeeecccccCCCCEEEEEecCCCCceeEEEE
Confidence            4556678999999999995 69999999887655   788888877632    223346789999996   235899999


Q ss_pred             cCCHHHHHHHHHHHHHHhc
Q psy8929         125 AVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~~~~  143 (160)
                      |+|++|+++||.||+.++.
T Consensus        92 a~s~~e~~~Wi~al~~~~~  110 (125)
T 1unq_A           92 VETPEEREEWTTAIQTVAD  110 (125)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999987

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.80  E-value=4.5e-19  Score=135.31  Aligned_cols=81  Identities=21%  Similarity=0.449  Sum_probs=69.3

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCC------CccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPK------AEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~------~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      .++|++|||||+++.|+||+++.      +..+   .|.|+|.++.. ....+  .++++|+|.++++++|+|+|+|++|
T Consensus        36 ~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p---~g~I~L~~~~v-~~~~~~~kk~~~F~I~t~~~r~y~f~A~s~ee  111 (263)
T 3a8p_A           36 RRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAP---RCALFAEDSIV-QSVPEHPKKEHVFCLSNSCGDVYLFQATSQTD  111 (263)
T ss_dssp             TCCCEEEEEEEETTEEEEESSCCC------CCC---SEEEECTTCEE-EECTTCSSCSSEEEEECTTSCEEEEECSSHHH
T ss_pred             CCCceEEEEEEcCCEEEEEecCcccccccccCc---cceEEcCCcEE-EECCcCCCCCCEEEEEcCCCcEEEEEcCCHHH
Confidence            78999999999999999999853      3344   79999998874 33332  5789999999777999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8929         131 RNNWMSAIKRTAA  143 (160)
Q Consensus       131 ~~~Wi~al~~~~~  143 (160)
                      +++||.+|+.++.
T Consensus       112 ~~~Wi~aI~~a~~  124 (263)
T 3a8p_A          112 LENWVTAIHSACA  124 (263)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999886

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.79  E-value=8.8e-20  Score=123.90  Aligned_cols=86  Identities=14%  Similarity=0.270  Sum_probs=71.0

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccC--C---ccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEES--G---VLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~--~---~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      ..+.|++|||||+++.|+||+++.+..+  .   .+.+.|+|.++. +....+  .++|+|+|.++++++|+|+|+|++|
T Consensus        28 ~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~~kr~~~F~l~t~~~~~~lfqA~s~~e  106 (122)
T 1dro_A           28 SNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAA-IEIASDYTKKKHVLRVKLANGALFLLQAHDDTE  106 (122)
T ss_dssp             CCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCC-CEECCSSSSSTTEEEEECSSSCEEEEECSSSHH
T ss_pred             CCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCE-EEeCCCCCCCCeEEEEEEcCCCEEEEECCCHHH
Confidence            4689999999999999999999987542  1   113679998886 444333  5889999998778999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy8929         131 RNNWMSAIKRTAAM  144 (160)
Q Consensus       131 ~~~Wi~al~~~~~~  144 (160)
                      |++||.+|+.++..
T Consensus       107 ~~~Wi~ai~~~i~~  120 (122)
T 1dro_A          107 MSQWVTSLKAQSDS  120 (122)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999864

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.79  E-value=2e-19  Score=123.06  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             eeeeceEEEEEEeC-CEEEEEeCCCCccCCccceeEEcCCceeeee--------------------cCCCCCceEEEEeC
Q psy8929          58 QITTWTKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSLSE--------------------VPVARNFGFQITTW  116 (160)
Q Consensus        58 ~~~~WkkrwfvL~~-~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~--------------------~~~~~~~~F~i~t~  116 (160)
                      ..++|++|||||++ +.|+||++..+.......+.|+|..+....+                    ..+.++++|.|+++
T Consensus        18 ~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~F~I~t~   97 (128)
T 2rlo_A           18 LNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSS   97 (128)
T ss_dssp             TTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCCSSCCCCCCCEEEECT
T ss_pred             ccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccccccccccCCceEEEEcC
Confidence            56899999999996 7888887632210000023455544432111                    11246899999999


Q ss_pred             CCcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         117 DSKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       117 ~~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      ++++|+|+|+|++|+++||.||+.++.
T Consensus        98 ~~r~~~l~A~s~~e~~~Wi~ai~~~i~  124 (128)
T 2rlo_A           98 TGQTWHFEAASFEERDAWVQAIESQIL  124 (128)
T ss_dssp             TSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            779999999999999999999999885

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.77  E-value=2.7e-18  Score=135.70  Aligned_cols=88  Identities=24%  Similarity=0.506  Sum_probs=75.6

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC-CCCCceEEEEeCC--------------
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP-VARNFGFQITTWD--------------  117 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~-~~~~~~F~i~t~~--------------  117 (160)
                      .|.|+..+.|++|||||+++.|+||+++.+..+   .|.|+|.++. |...+ ..++++|+|.+++              
T Consensus       220 ~K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~p---~G~I~L~~~~-v~~~~~~~~~~~F~I~~~~~~~~~~~~~k~~~~  295 (347)
T 2r09_A          220 LKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENLS-IREVEDPRKPNCFELYNPSHKGQVIKACKTEAD  295 (347)
T ss_dssp             EEECSSSCCEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCE-EEEECCSSCSSEEEEECSSSTTCCCCCEEECTT
T ss_pred             EecCCCcccceeEEEEEcCCEEEEEcCCCccCC---cEEEEcCCeE-EEEccCCCCCCEEEEEeCCcccccccccccccc
Confidence            344556789999999999999999999988776   8999999998 44443 3688999999873              


Q ss_pred             -------CcEEEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         118 -------SKRTILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       118 -------~r~~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                             .|+|+|+|+|++|+++||.+|+.++..
T Consensus       296 g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~  329 (347)
T 2r09_A          296 GRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  329 (347)
T ss_dssp             SCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             ccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence                   389999999999999999999999863

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.76  E-value=2.6e-18  Score=131.15  Aligned_cols=82  Identities=18%  Similarity=0.331  Sum_probs=70.7

Q ss_pred             eeceEEEEEEeCC-------EEEEEeCCCC-----ccCCccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcC
Q psy8929          60 TTWTKHWFVLRGC-------SLLYYRDPKA-----EESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAV  126 (160)
Q Consensus        60 ~~WkkrwfvL~~~-------~L~yyk~~~~-----~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~  126 (160)
                      ++|++|||||+++       .|+||+++.+     ..+   .|.|+|.++..|....+ .++++|.|.|++ |+|+|+|+
T Consensus        20 K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p---~g~I~L~~~~~V~~~~~~~~~~~F~I~t~~-rty~l~A~   95 (264)
T 1qqg_A           20 KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAP---KRSIPLESCFNINKRADSKNKHLVALYTRD-EHFAIAAD   95 (264)
T ss_dssp             TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCC---SEEEEGGGEEEEEEECCSSCSSEEEEEESS-CEEEEECS
T ss_pred             CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCc---ceEEEeeceEEEEeccCCCCCcEEEEEECC-EEEEEEeC
Confidence            7999999999998       9999999886     344   89999999987766543 678999999985 99999999


Q ss_pred             CHHHHHHHHHHHHHHhccc
Q psy8929         127 TAGIRNNWMSAIKRTAAMS  145 (160)
Q Consensus       127 s~~e~~~Wi~al~~~~~~~  145 (160)
                      |++|+++||.+|+.++...
T Consensus        96 se~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           96 SEAEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             SHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            9999999999999988744

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.75  E-value=1.9e-17  Score=123.81  Aligned_cols=122  Identities=20%  Similarity=0.379  Sum_probs=88.7

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC---
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA---   82 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~---   82 (160)
                      ++||||||||+++.|.||+++.+..+   .|.|+|..+..+.... .++..|.+         .+++..+|+..++.   
T Consensus        77 k~WkkRwfvL~~~~L~Yyk~~~~~~~---~g~I~L~~~~~v~~~~-~k~~~F~I---------~t~~r~~~l~A~s~~e~  143 (228)
T 3tfm_A           77 RNWKKRWFVLRQSKLMYFENDSEEKL---KGTVEVRSAKEIIDNT-NKENGIDI---------IMADRTFHLIAESPEDA  143 (228)
T ss_dssp             GGCEEEEEEECSSEEEEESSTTCCSE---EEEEEGGGCSEEEEET-TTTSEEEE---------ECSSCEEEEECSSHHHH
T ss_pred             CCceEEEEEEeCCEEEEEeCCCCcce---eEEEEcCCCEEeccCC-CCCcEEEE---------EcCCcEEEEEcCCHHHH
Confidence            89999999999999999999977444   7999999987655332 23334433         33444444432221   


Q ss_pred             -------------------------ccCCccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHHHHHHHHH
Q psy8929          83 -------------------------EESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAGIRNNWMS  136 (160)
Q Consensus        83 -------------------------~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~  136 (160)
                                               ..+....|.+++..+..+..... .+++.|.|+|++ |+|+|+|++++|+.+||.
T Consensus       144 ~~Wv~aL~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~s~~~~~~~~~~~~f~iit~~-r~~~~~a~s~~e~~~Wi~  222 (228)
T 3tfm_A          144 SQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVGLIDSVCASDSPDRPNSFVIITAN-RVLHCNADTPEEMHHWIT  222 (228)
T ss_dssp             HHHHHHHHHHHTCCHHHHTTCCCCCCCTTTCSEEEEGGGEEEEEECCCSSCTTEEEEEETT-EEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhhhhhcccCcccccccCChhheeccccCCCCCCCCcEEEEeCC-ceEEEEcCCHHHHHHHHH
Confidence                                     11223468888888776655433 588999999986 999999999999999999


Q ss_pred             HHHHH
Q psy8929         137 AIKRT  141 (160)
Q Consensus       137 al~~~  141 (160)
                      +|+++
T Consensus       223 ~lq~~  227 (228)
T 3tfm_A          223 LLQRS  227 (228)
T ss_dssp             HHCSC
T ss_pred             HHhhc
Confidence            99874

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=7.4e-18  Score=115.23  Aligned_cols=87  Identities=16%  Similarity=0.355  Sum_probs=69.9

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeC---CCcEEEEEcCCHHHH
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTW---DSKRTILSAVTAGIR  131 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~---~~r~~~l~a~s~~e~  131 (160)
                      .+.+++||+|||+|++..|+||++..+.. +.+.|.|+|.+|.....+.. ..++.|.+..|   +.++|+|.|+|++++
T Consensus        22 k~tlK~~KrrWFvlk~~~L~YyK~kee~~-~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy  100 (137)
T 2ys3_A           22 KLTLKGYRQHWVVFKETTLSYYKSQDEAP-GDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQY  100 (137)
T ss_dssp             SCCSSSSCCCEEEECSSCEEEESSTTTTT-SCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEEEEEEEESSHHHH
T ss_pred             ccccccceeEEEEEeCCEEEEECCchhcc-CCCceEEECCCCEEeccccccCCceEEEEEccCCCCceEEEEECCCHHHH
Confidence            46778999999999999999999988862 22389999999994333211 56788777654   238999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8929         132 NNWMSAIKRTAA  143 (160)
Q Consensus       132 ~~Wi~al~~~~~  143 (160)
                      .+||+||+.|..
T Consensus       101 ~~WMaA~rlAsk  112 (137)
T 2ys3_A          101 ARWMAGCRLASK  112 (137)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcc
Confidence            999999998764

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.73  E-value=2.1e-17  Score=132.19  Aligned_cols=80  Identities=23%  Similarity=0.455  Sum_probs=68.4

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC-CCCCceEEEEeCCC-cEEEEEcCCHHHHHHHHHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP-VARNFGFQITTWDS-KRTILSAVTAGIRNNWMSA  137 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~-~~~~~~F~i~t~~~-r~~~l~a~s~~e~~~Wi~a  137 (160)
                      +.|++|||||+++.|+||++. +..+   .|.|+|..|.. ...+ ..+++||.|+|+++ ++|+|+|+|++|++.||.|
T Consensus       295 ~~WkkRwfvL~~~~L~y~k~~-~~~~---~~~i~l~~~~v-~~~~~~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~a  369 (385)
T 2q13_A          295 STWDRQFYFTQGGNLMSQARG-DVAG---GLAMDIDNCSV-MAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICT  369 (385)
T ss_dssp             -CCEEEEEEEETTEEEEECSS-CSSC---EEEEECTTCEE-EEECCTTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHH
T ss_pred             CCceeEEEEEECCEEEEecCC-CcCC---CceEEccceEE-EeccccCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHH
Confidence            479999999999999999994 3344   69999999984 4443 46889999999975 8999999999999999999


Q ss_pred             HHHHhcc
Q psy8929         138 IKRTAAM  144 (160)
Q Consensus       138 l~~~~~~  144 (160)
                      |+.++..
T Consensus       370 i~~~~~~  376 (385)
T 2q13_A          370 INNISKQ  376 (385)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998873

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.72  E-value=1.2e-17  Score=134.39  Aligned_cols=83  Identities=27%  Similarity=0.444  Sum_probs=71.1

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeCCC-cEEEEEcCCHHHHHH
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDS-KRTILSAVTAGIRNN  133 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~-r~~~l~a~s~~e~~~  133 (160)
                      |+..+.|++|||||+++.|+||+......    .+.|+|..|. |...+. .++|||+|+++++ ++|+|+|+|++|+..
T Consensus       314 g~~~~~W~rrwfvl~~~~l~y~~~~~~~~----~~~~~l~~~~-v~~~~~~~r~~cF~i~~~~~~~~~~l~A~s~~e~~~  388 (407)
T 4h8s_A          314 GLVTTTWERLYFFTQGGNLMCQPRGAVAG----GLIQDLDNCS-VMAVDCEDRRYCFQITTPNGKSGIILQAESRKENEE  388 (407)
T ss_dssp             SSSCEEEEEEEEEECSSCEECCCTTCSSC----CCCBCSSCCE-EEEECCTTCSSEEEEECTTSSCCEEEECSSSHHHHH
T ss_pred             CCCCCCceEEEEEEECCEEEEEeCCCCCC----CeEEECCceE-EEECCCCCCCceEEEEecCCCceEEEEcCCHHHHHH
Confidence            45568899999999999999999776654    4889999998 555443 6889999999864 689999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||.||+.++.
T Consensus       389 Wi~ai~~a~~  398 (407)
T 4h8s_A          389 WICAINNISR  398 (407)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHH
Confidence            9999999987

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.71  E-value=2e-17  Score=111.73  Aligned_cols=89  Identities=17%  Similarity=0.268  Sum_probs=70.4

Q ss_pred             eeeeee-eceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---------CCCceEEEEeC-----CCc
Q psy8929          55 FGFQIT-TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---------ARNFGFQITTW-----DSK  119 (160)
Q Consensus        55 ~g~~~~-~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---------~~~~~F~i~t~-----~~r  119 (160)
                      .|+..+ +|++|||||++..|+||+++.+.....+.+.|+|+.+..|+.+..         ..++.|+|.+.     ..+
T Consensus        12 ~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~   91 (117)
T 2rov_A           12 RNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGISSAK   91 (117)
T ss_dssp             CSSSSCCCCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCE
T ss_pred             CCCccCCCcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEEEcccccccccccccCCcEEEEEeCCCCCCCCc
Confidence            444556 899999999999999999876541112379999988877666533         24678999874     248


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         120 RTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       120 ~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      ++||.|+|++|+++||.+|+.+|.
T Consensus        92 ~l~l~A~s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           92 NLLLLANSTEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHCT
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999874

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.66  E-value=2.3e-16  Score=121.15  Aligned_cols=86  Identities=16%  Similarity=0.287  Sum_probs=66.4

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEc---CCceeeeecC------CCCCceEEEEeCC-----Cc
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVAL---NNVTSLSEVP------VARNFGFQITTWD-----SK  119 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L---~~~~~v~~~~------~~~~~~F~i~t~~-----~r  119 (160)
                      ++|...+.|++|||||+++.|+||+++.+..+   .|.|.|   ..+.......      ..++|+|.|.+++     .+
T Consensus       176 k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~---~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~  252 (291)
T 3tca_A          176 LKEDGKKSWKRRYFLLRASGIYYVPKGKTKTS---RDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQIQKESQY  252 (291)
T ss_dssp             EECTTSSCEEEEEEEECSSEEEECCTTCCSST---TTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTTCCSCCTT
T ss_pred             EeCCCCCCceEEEEEEeCCEEEEEecCccccc---cCceeeccceeEEEEecCccccccCCCCCeEEEEEcCCCCCCCce
Confidence            34556789999999999999999999988776   555555   4444222211      1468999999864     25


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHh
Q psy8929         120 RTILSAVTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       120 ~~~l~a~s~~e~~~Wi~al~~~~  142 (160)
                      +|+|+|+|++|+..||.||+.|.
T Consensus       253 ~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          253 IKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             SEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHh
Confidence            79999999999999999999875

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.66  E-value=1.3e-16  Score=127.68  Aligned_cols=86  Identities=17%  Similarity=0.324  Sum_probs=68.1

Q ss_pred             cceeeeeeeceEEEEEE--eCCEEEEEeCCCCccCCccceeEEcCCceeeeec-CCCCCceEEEE----eCCCcEEEEEc
Q psy8929          53 RNFGFQITTWTKHWFVL--RGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV-PVARNFGFQIT----TWDSKRTILSA  125 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL--~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~-~~~~~~~F~i~----t~~~r~~~l~a  125 (160)
                      .|+|...+.|++|||||  +++.|+||+++++..|   .|.|.|.++..+... ..+++++|+|.    ++ .|+|+|+|
T Consensus       153 ~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p---~g~I~L~~~~~~~~~~~~~~~~~f~I~~~~~~~-~R~y~l~A  228 (386)
T 3lju_X          153 WKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEP---KAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNS-TRNIFIYH  228 (386)
T ss_dssp             EEECSSSCCEEEEEEEEETTTTEEEEEC-----CC---SEEEEGGGEEEEECHHHHTSTTCEEEEEEETTE-EEEEEEEC
T ss_pred             eeeccccCCceEEEEEEEcCCCEEEEECCCCccCc---ccEEEeeccEEEEcccccCCCceEEEEEecCCC-ceEEEEEc
Confidence            34466678999999999  8999999999988887   899999998755421 12688999998    44 48999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q psy8929         126 VTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       126 ~s~~e~~~Wi~al~~~~  142 (160)
                      +|++|+.+||++|+.+.
T Consensus       229 ~s~~e~~~Wi~aIr~a~  245 (386)
T 3lju_X          229 EDGKEIVDWFNALRAAR  245 (386)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhhcc
Confidence            99999999999999873

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.62  E-value=3.4e-16  Score=119.75  Aligned_cols=86  Identities=20%  Similarity=0.407  Sum_probs=69.4

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccC---CccceeEEcCCceeeeecC-CCCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEES---GVLDGVVALNNVTSLSEVP-VARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~---~~~~g~I~L~~~~~v~~~~-~~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ..+.|+++||||+++.|+||+++.....   ..+.+.|+|.++......+ ..++++|.|.+++++.|+|+|++++||+.
T Consensus        35 ~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~~kKk~vF~L~t~~g~~yLFQA~s~eEm~~  114 (279)
T 3a8n_A           35 TRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELEN  114 (279)
T ss_dssp             CCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTTSSSSCSCCCEEETTTEEEECCCSCHHHHHH
T ss_pred             cCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEeccccCCCCcEEEEEcCCCCEEEEeCCCHHHHHH
Confidence            4689999999999999999999875311   1226889999999542222 36789999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||.+|+.++.
T Consensus       115 WI~aI~~a~~  124 (279)
T 3a8n_A          115 WITAIHSACA  124 (279)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999886

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.61  E-value=4.4e-15  Score=103.25  Aligned_cols=87  Identities=22%  Similarity=0.361  Sum_probs=67.8

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCC---------Ccc----C-------------C--------------------ccc
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPK---------AEE----S-------------G--------------------VLD   89 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~---------~~~----~-------------~--------------------~~~   89 (160)
                      +...+.|++|||||+++.|+|++...         +..    +             .                    -..
T Consensus        11 ~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~E~~~lG~l~k   90 (150)
T 2fjl_A           11 DPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLDENSPLGDLLR   90 (150)
T ss_dssp             ETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSCTTTTTTTCCC
T ss_pred             cCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhccccccccccccc
Confidence            44668999999999999999998211         100    0             0                    016


Q ss_pred             eeEEcCCceeeeecCC---CCCceEEEEeCC--CcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929          90 GVVALNNVTSLSEVPV---ARNFGFQITTWD--SKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus        90 g~I~L~~~~~v~~~~~---~~~~~F~i~t~~--~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      |.|+|.+|. |...+.   +++++|.|.+++  .++|.|.|+|.+||.+||.+|+.++.
T Consensus        91 G~IdL~gc~-V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~  148 (150)
T 2fjl_A           91 GVLDVPACQ-IAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ  148 (150)
T ss_dssp             EEECSTTCE-EEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             ceEecCccE-EEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence            999999999 454433   588999999874  25899999999999999999999875

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.59  E-value=4.8e-15  Score=103.85  Aligned_cols=87  Identities=13%  Similarity=0.302  Sum_probs=70.8

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeC---CCcEEEEEcCCHHHH
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTW---DSKRTILSAVTAGIR  131 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~---~~r~~~l~a~s~~e~  131 (160)
                      .+.+++||+||||+++..|+|||++.+.. +.+.+.|+|.+|.+...+.. ..++.+.+.-|   +...++|.|+|++++
T Consensus        60 ~~tLKgyKryWFv~kd~~LsyYKskEe~~-geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qy  138 (173)
T 4f7h_A           60 KLTLKGYKQYWCTFKDTSISCYKSKEESS-GTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQY  138 (173)
T ss_dssp             TTBCCCCEEEEEEEETTEEEEESCGGGCS-SCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHHH
T ss_pred             hcccccceeEEEEEeCCEEEEEcCHhHhc-CCCceEEecCceEEeccccccccceeEEEeccCCCCcceeeeecCCHHHH
Confidence            56789999999999999999999998844 34499999999996544444 45666666533   336899999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8929         132 NNWMSAIKRTAA  143 (160)
Q Consensus       132 ~~Wi~al~~~~~  143 (160)
                      .+||.|++-|..
T Consensus       139 a~WMAAcrLAsk  150 (173)
T 4f7h_A          139 AHWMAACRLASK  150 (173)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHhhhhcc
Confidence            999999998765

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.59  E-value=6.9e-15  Score=102.05  Aligned_cols=88  Identities=20%  Similarity=0.400  Sum_probs=68.4

Q ss_pred             eeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEe--CCC-cEEEEEcCCHHH
Q psy8929          55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITT--WDS-KRTILSAVTAGI  130 (160)
Q Consensus        55 ~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t--~~~-r~~~l~a~s~~e  130 (160)
                      +.+.+++||++|||+++..|+|||++++.. +.+.+.|+|.+|.+...+.. ..++.|.|.-  +++ ..++|.|+|+++
T Consensus        38 krltLKgfKryWfv~kDt~LsyYKSkEe~~-geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~e~~LrcdsE~Q  116 (165)
T 4bbk_A           38 KKLMLKACKQYWFVFKDTSIAYFKNKELEQ-GEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVYLRCDHEDQ  116 (165)
T ss_dssp             ------CCEEEEEEEETTEEEEESSGGGTT-SCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEEEEEEESSHHH
T ss_pred             cccccccceeEEEEEeCCEEEEEcCHHHhc-CCCceEEecCccEEecccccccceeeEEEecCCCCcceeeeeecCCHHH
Confidence            357889999999999999999999998855 34599999999996555544 5678787753  333 489999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8929         131 RNNWMSAIKRTAA  143 (160)
Q Consensus       131 ~~~Wi~al~~~~~  143 (160)
                      ..+||.|++-|..
T Consensus       117 Ya~WMAAcrLAsk  129 (165)
T 4bbk_A          117 YARWMAACILASK  129 (165)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhccc
Confidence            9999999999776

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.46  E-value=7.8e-14  Score=112.82  Aligned_cols=88  Identities=22%  Similarity=0.365  Sum_probs=66.8

Q ss_pred             cceeeeeeeceEEEEEEe-CCEEEEEeCCCCccCCccceeEEcCCceeee----ecCCCCCceEEEEeCCCcEE---EEE
Q psy8929          53 RNFGFQITTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNVTSLS----EVPVARNFGFQITTWDSKRT---ILS  124 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~-~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~----~~~~~~~~~F~i~t~~~r~~---~l~  124 (160)
                      .|+|...++||+|||||+ ++.|+||+++.+..+   .|.|+|..++.+.    ..+..++++|.|.+++.+++   .|+
T Consensus        13 ~K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~f~I~~~~~~~~~~r~~~   89 (446)
T 4ejn_A           13 HKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVD---QREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFH   89 (446)
T ss_dssp             EEEETTTTEEEEEEEEEETTSBEEEESSCC----------CCCGGGBCTTCEEEEECSSSTTEEEEEEEETTEEEEEEEE
T ss_pred             EeeccccccccceEEEEeeCCEEEEEecCCCCCc---cCcccccCccccceeecCCCCCCCceeEEEcCCCceeeeeEEe
Confidence            466778899999999997 899999999998776   7889998865321    22235689999998765555   799


Q ss_pred             cCCHHHHHHHHHHHHHHhc
Q psy8929         125 AVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~~~~  143 (160)
                      ++++++++.|+.||+.++.
T Consensus        90 ~~~~ee~e~W~~ai~~~i~  108 (446)
T 4ejn_A           90 VETPEEREEWTTAIQTVAD  108 (446)
T ss_dssp             CSSHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHHHHhhhh
Confidence            9999999999999999876

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-12  Score=88.02  Aligned_cols=81  Identities=22%  Similarity=0.305  Sum_probs=66.3

Q ss_pred             eceEEEEEEeC------CEEEEEeCCCCcc-CCccceeEEcCCceeeeecCC-----CCCceEEEEeCCCcEEEEEcCCH
Q psy8929          61 TWTKHWFVLRG------CSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVPV-----ARNFGFQITTWDSKRTILSAVTA  128 (160)
Q Consensus        61 ~WkkrwfvL~~------~~L~yyk~~~~~~-~~~~~g~I~L~~~~~v~~~~~-----~~~~~F~i~t~~~r~~~l~a~s~  128 (160)
                      .|++|||||.+      ..|-||.+++... ...+..+|.|++|..|.+...     ...+.|.|.|++ ++|+|.|+++
T Consensus        29 KWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~~aF~l~T~e-r~~~laAe~~  107 (127)
T 2d9w_A           29 KWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDTSAFFLETKE-RLYLLAAPAA  107 (127)
T ss_dssp             BCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSCEEEEEEESS-CEEEEEECHH
T ss_pred             hhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCCcceEEEEEeCC-cEEEEEeCcH
Confidence            49999999986      5799999876632 123479999999999988744     355899999986 9999999965


Q ss_pred             HHHHHHHHHHHHHhc
Q psy8929         129 GIRNNWMSAIKRTAA  143 (160)
Q Consensus       129 ~e~~~Wi~al~~~~~  143 (160)
                       |+.+||.+|...+-
T Consensus       108 -E~~~Wi~~ic~~aF  121 (127)
T 2d9w_A          108 -ERGDWVQAICLLAF  121 (127)
T ss_dssp             -HHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHhc
Confidence             99999999998653

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.43  E-value=8.7e-13  Score=99.85  Aligned_cols=88  Identities=18%  Similarity=0.283  Sum_probs=66.8

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC------CCCceEEEEeCCC-----cEEEEE
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV------ARNFGFQITTWDS-----KRTILS  124 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~------~~~~~F~i~t~~~-----r~~~l~  124 (160)
                      +...+.|++|||+|+++.|+||+.....++......++|.+.........      ..+++|.|..+..     ..++||
T Consensus       142 e~~~K~WkkRyfvLr~sgLy~~~k~~sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k~~~~~~~~~~lc  221 (256)
T 3hk0_A          142 ELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLC  221 (256)
T ss_dssp             CTTSSCEEEEEEEEETTEEEEESSTTCCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEETTCSSCCTTCEEEE
T ss_pred             cCCCCcceEEEEEEeCCEEEEEecCCCCccccceEEEEcCCCEEEEecccccccCCCCCCEEEEEcccccCCCceEEEEE
Confidence            34468999999999999999999887655522223368999884333322      3579999996532     369999


Q ss_pred             cCCHHHHHHHHHHHHHHhc
Q psy8929         125 AVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~~~~  143 (160)
                      |++++++..||.||+.+..
T Consensus       222 aede~~~~~W~~aIr~ak~  240 (256)
T 3hk0_A          222 AEDEQTRTSWMTAFRLLKY  240 (256)
T ss_dssp             ESSHHHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHh
Confidence            9999999999999998754

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.40  E-value=6.6e-13  Score=101.65  Aligned_cols=88  Identities=17%  Similarity=0.255  Sum_probs=62.6

Q ss_pred             eeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC-------CCCCceEEEEeCC-----CcEEE
Q psy8929          55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP-------VARNFGFQITTWD-----SKRTI  122 (160)
Q Consensus        55 ~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~-------~~~~~~F~i~t~~-----~r~~~  122 (160)
                      ++...+.|++|||+|+++.|+||+.....++..+.+.++|.++. |....       ..++++|.|..+.     ...++
T Consensus       167 k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~r~l~~l~~L~~~~-VY~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~  245 (281)
T 4gmv_A          167 KDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVN-VYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKY  245 (281)
T ss_dssp             ECTTSSCEEEEEEEECSSCEEEC---------CCEEEECGGGCE-EEEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEE
T ss_pred             ECCCCCCCeEEEEEEeCCEEEEEeCCCCCccccceEEEEcCCcE-EEEecccccccCCCCCcEEEEecCccCCCCCceEE
Confidence            33455899999999999999999987654443335667899977 44432       2468999999643     35899


Q ss_pred             EEcCCHHHHHHHHHHHHHHhc
Q psy8929         123 LSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       123 l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      |||++++++..||.||+-+..
T Consensus       246 ~caede~~~~~Wv~Air~ak~  266 (281)
T 4gmv_A          246 LCCDDVRTLHQWVNGIRIAKY  266 (281)
T ss_dssp             EECSSHHHHHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHHHHhh
Confidence            999999999999999998753

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=99.40  E-value=9.1e-13  Score=91.52  Aligned_cols=76  Identities=17%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR  140 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~  140 (160)
                      .|++|||+|+++...||-++.....   +|.|+|+....++..+   ...|.|.|++ |+|+|.+. ...+.+|++||+.
T Consensus        65 ~~kkR~liLT~~PrL~Yvdp~~~~~---KGeIpls~~l~ve~k~---~~~F~I~Tp~-RtY~~~d~-~~~AqeWv~aI~~  136 (151)
T 1w1g_A           65 FARRRQLLLTEGPHLYYVDPVNKVL---KGEIPWSQELRPEAKN---FKTFFVHTPN-RTYYLMDP-SGNAHKWCRKIQE  136 (151)
T ss_dssp             EEEEEEEEEETTTEEEEEETTTTEE---EEEECCCTTCEEEESS---SSEEEEEETT-EEEEEECT-TSCHHHHHHHHHH
T ss_pred             cceeEEEEEcCCceEEEEcCccccc---cceEecCCCeeEEEcC---CCEEEEECCC-ceEEEEcC-ccCHHHHHHHHHH
Confidence            4999999999998899998887665   8999999987666653   4599999997 99999887 8899999999999


Q ss_pred             Hhcc
Q psy8929         141 TAAM  144 (160)
Q Consensus       141 ~~~~  144 (160)
                      ++..
T Consensus       137 ~~~~  140 (151)
T 1w1g_A          137 VWRQ  140 (151)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.23  E-value=2e-11  Score=83.61  Aligned_cols=39  Identities=36%  Similarity=0.593  Sum_probs=34.6

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL   46 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~   46 (160)
                      .++||||||||+++.|+||+++.+..+   .|.|+|..+..+
T Consensus        20 ~k~WkrRWfVLk~~~L~yyk~~~~~~p---~G~I~L~~~~v~   58 (130)
T 1v88_A           20 LKSWTKLWCVLKPGVLLIYKTQKNGQW---VGTVLLNACEII   58 (130)
T ss_dssp             SSSCEEEEEEEETTEEEEESCSSSCCC---CEEEECSSCEEC
T ss_pred             CCCceEEEEEEECCEEEEECCCCCCCc---eEEEEcCCCEEE
Confidence            579999999999999999999987666   799999998753

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.20  E-value=1.1e-10  Score=78.33  Aligned_cols=83  Identities=13%  Similarity=0.252  Sum_probs=70.5

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-------CCCceEEEEeCCCcEEEEEcC----
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARNFGFQITTWDSKRTILSAV----  126 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-------~~~~~F~i~t~~~r~~~l~a~----  126 (160)
                      ....||++|++|+..+|.+|+++.+.++   ...|+|..+..|++...       ..++||+|.|.+ .+||+.++    
T Consensus        20 ~d~~rKRHYWrLD~K~Itlf~~e~~~~~---ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~~-~~yyVg~~~~~~   95 (125)
T 2coa_A           20 KDTLRKRHYWRLDCKCITLFQNNTTNRY---YKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN-ATYFVGEMPGGT   95 (125)
T ss_dssp             SSCCCEEEEEEECSSEEEEESSSSCSSC---SEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS-CCCCEECCSCCC
T ss_pred             CCccccceeeEecCCeEEEEecCCCCce---eeeeehhHeecccccccccccCCCCCCceEEEEeCC-eEEEEccCCCCC
Confidence            3468999999999999999999998887   78899999999888642       366999999974 89999764    


Q ss_pred             -------CHHHHHHHHHHHHHHhcc
Q psy8929         127 -------TAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       127 -------s~~e~~~Wi~al~~~~~~  144 (160)
                             ..+.+..|..||++|+.-
T Consensus        96 p~~~sg~g~~~a~~W~~aIrqALmP  120 (125)
T 2coa_A           96 PGGPSGQGAEAARGWETAIRQALMS  120 (125)
T ss_dssp             SSSCCCCCSHHHHHHHHHHHHHGGG
T ss_pred             CCCcCccccHHHHHHHHHHHhhccC
Confidence                   136799999999999863

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.19  E-value=8.9e-11  Score=75.35  Aligned_cols=70  Identities=21%  Similarity=0.417  Sum_probs=47.8

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCCc
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAE   83 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~   83 (160)
                      ..++||||||||+++.|.||+++.+....+ .|.|+|..+.......  .+         ..|.+..++..+++..++..
T Consensus        13 ~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~~-~~~i~l~~~~~~~~~~--~~---------~~F~i~~~~r~~~l~A~s~~   80 (94)
T 2rsg_A           13 YIHGWQDRWVVLKNNALSYYKSEDETEYGC-RGSICLSKAVITPHDF--DE---------CRFDISVNDSVWYLRAQDPD   80 (94)
T ss_dssp             STTCEEEEEEEEETTEEEEESSTTGGGTCC-SEEEETTTCEEEECSS--CS---------SEEEEEETTEEEEEECCSSC
T ss_pred             CCCCceEEEEEEECCEEEEEEecccccccc-eeeEecceeeeecCcc--cc---------eeEEEEeCCeEEEEECCCHH
Confidence            357899999999999999999887655444 5999999876543322  11         13445556666666655554


Q ss_pred             cC
Q psy8929          84 ES   85 (160)
Q Consensus        84 ~~   85 (160)
                      +.
T Consensus        81 e~   82 (94)
T 2rsg_A           81 HR   82 (94)
T ss_dssp             CT
T ss_pred             HH
Confidence            43

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.9e-10  Score=75.83  Aligned_cols=82  Identities=13%  Similarity=0.227  Sum_probs=69.7

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-------CCCceEEEEeCCCcEEEEEcCC---
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARNFGFQITTWDSKRTILSAVT---  127 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-------~~~~~F~i~t~~~r~~~l~a~s---  127 (160)
                      .-..||++|++|+..+|.+|.++.....   -..|+|..+..|++...       ..++||+|.|.+ .+||+.++.   
T Consensus        20 ~d~~rKRHYWrLD~K~Itlf~~e~~~k~---ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T~~-~~y~Vge~~~~~   95 (129)
T 2d9z_A           20 RDNLRKRHYWRLDSKCLTLFQNESGSKY---YKEIPLSEILRISSPRDFTNISQGSNPHCFEIITDT-MVYFVGENNGDS   95 (129)
T ss_dssp             SCCCCEEEEEEEESSCEEEESCSSCCSC---CCEECTTTCCEECCTTCCCCSSSCSCCCSEEEECSS-CEEEECBCCSCC
T ss_pred             CCccccceeeEecCCeEEEEecCCCCce---eceeeHHHhcccccccCccccCCCCCCceEEEEECC-EEEEEccCCCCC
Confidence            3467999999999999999999988777   78899999998887643       245999999974 899987643   


Q ss_pred             ------------HHHHHHHHHHHHHHhc
Q psy8929         128 ------------AGIRNNWMSAIKRTAA  143 (160)
Q Consensus       128 ------------~~e~~~Wi~al~~~~~  143 (160)
                                  .+.+..|..||++|+.
T Consensus        96 ~~~~~~~~sg~g~~~a~~We~aIrqALm  123 (129)
T 2d9z_A           96 SHNPVLAATGVGLDVAQSWEKAIRQALM  123 (129)
T ss_dssp             SCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccchHHHHHHHHHHHHhcc
Confidence                        6999999999999986

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.12  E-value=3.8e-10  Score=74.23  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=36.6

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP   50 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~   50 (160)
                      .++||||||||+++.|+||+++.+..+   .|.|+|..+..+...+
T Consensus        21 ~~~Wk~RwfvL~~~~L~yyk~~~~~~~---~~~i~L~~~~~~~~~~   63 (109)
T 1wgq_A           21 KKPWKHLWFVIKNKVLYTYAASEDVAA---LESQPLLGFTVTLVKD   63 (109)
T ss_dssp             TSCCEEEEEEEETTEEEEESCTTCSSC---SEEEECSSEEEEECCC
T ss_pred             CCCceeEEEEEeCCEEEEECCCCcCcc---CceEECCCCEEEECCC
Confidence            478999999999999999999877666   7999999987665443

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.11  E-value=1.5e-10  Score=80.91  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=51.1

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCCc
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAE   83 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~   83 (160)
                      ..++||||||||+++.|+||+++.+..+   .|.|+|..+..+.......+.       ...|.+.++..-+++..++..
T Consensus        30 ~~k~WkrRWFvLk~~~L~Yyk~~~d~~~---~g~I~L~~~~~~~~~~~~~~~-------~~~F~I~t~~r~~~f~A~s~e   99 (149)
T 1x1f_A           30 GYREYEHYWTELRGTTLFFYTDKKSIIY---VDKLDIVDLTCLTEQNSTEKN-------CAKFTLVLPKEEVQLKTENTE   99 (149)
T ss_dssp             TCCSCEEEEEEEETTEEEEESCSSCSSC---SEECCCSSCCEEEECCCTTSC-------CCEEEEECSSCCEEEECSSHH
T ss_pred             CCCCceeEEEEEcCCEEEEEeCCCcccc---CcEEECCCceEEeeccCCCCc-------CcEEEEEcCCCEEEEEcCCHH
Confidence            3589999999999999999999988766   799999997665322111111       113334455444556655555


Q ss_pred             cCCccceeE
Q psy8929          84 ESGVLDGVV   92 (160)
Q Consensus        84 ~~~~~~g~I   92 (160)
                      +...|...|
T Consensus       100 e~~eWi~aI  108 (149)
T 1x1f_A          100 SGEEWRGFI  108 (149)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444444

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.10  E-value=7e-11  Score=78.85  Aligned_cols=77  Identities=12%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             CCCCceEEEEEEeCC---eEEEeeCCCcccCCcccceeecccceeecccccc---cceeeeeeeceEEEEEEeCCEEEEE
Q psy8929           4 KKHTWTKHWFVLRGC---SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA---RNFGFQITTWTKHWFVLRGCSLLYY   77 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~---~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~---kk~g~~~~~WkkrwfvL~~~~L~yy   77 (160)
                      +.++||||||||++.   .|+||+++.+..+   .|.|+|..|......+..   +++.|.         +..++..+|+
T Consensus        19 ~~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p---~g~I~L~g~~V~~~~~~~~~~~~~~Fk---------i~~~~~~y~f   86 (112)
T 2coc_A           19 SGETWSEVWAAIPMSDPQVLHLQGGSQDGRL---PRTIPLPSCKLSVPDPEERLDSGHVWK---------LQWAKQSWYL   86 (112)
T ss_dssp             SSSCEEEEEEECCTTCTTCEEEECCTTCSSS---CSEECGGGCEEECCCSSSCCSSSEEEE---------EEETTEEEEE
T ss_pred             CCCCceEEEEEEECCCccEEEEECCCCccCc---ceEEEcCCCEEEecCcccccCCCCEEE---------EecCCeEEEE
Confidence            368999999999984   7999999988766   799999998654211111   222332         2356677777


Q ss_pred             eCCCCccCCccceeE
Q psy8929          78 RDPKAEESGVLDGVV   92 (160)
Q Consensus        78 k~~~~~~~~~~~g~I   92 (160)
                      .-+..++...|.+.|
T Consensus        87 ~A~s~e~~~~Wl~al  101 (112)
T 2coc_A           87 SASSAELQQQWLETL  101 (112)
T ss_dssp             EESSHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHH
Confidence            776665544444433

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.05  E-value=3.2e-10  Score=76.25  Aligned_cols=37  Identities=24%  Similarity=0.523  Sum_probs=32.6

Q ss_pred             CCC-ceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           5 KHT-WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~-Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      .++ ||+|||||++.+|+||+++.+.++   .|.|+|.++.
T Consensus        26 ~k~~wk~rWFVLt~~~L~yyKd~~eke~---~G~IpL~~~~   63 (125)
T 1dyn_A           26 MKGGSKEYWFVLTAENLSWYKDDEEKEK---KYMLSVDNLK   63 (125)
T ss_dssp             GGTSSEEEEEEEESSEEEEESSTTCSCE---EEEEECTTEE
T ss_pred             ccCCceeeEEEEeccceeeecCCccccc---ceEEECCCce
Confidence            454 999999999999999999988777   7999998854

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.04  E-value=4.2e-10  Score=79.81  Aligned_cols=75  Identities=16%  Similarity=0.264  Sum_probs=45.7

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCCcc
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEE   84 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~   84 (160)
                      ++||||||||+++.|.||+++.+..  .+.|.|+|..+..+..........  ...-+..+.+.++...+|+.-+++.+
T Consensus        34 knWKkRwFVL~~~~L~Yyk~~~~~~--~~~G~I~L~~~~~v~~~~~~~~~~--~~~~~~~f~i~t~~rt~~l~A~s~~e  108 (164)
T 2lul_A           34 LNYKERLFVLTKSMLTYYEGRAEKK--YRKGFIDVSKIKCVEIVKNDDGVI--PCQNKYPFQVVHDANTLYIFAPSPQS  108 (164)
T ss_dssp             CCEEEEEEEEESSEEEEECCCSSSC--CCCCEEEGGGCCEEEECCCCSSSC--CSSSCSEEEEECSSCEEEEECSSHHH
T ss_pred             CCceeEEEEEECCEEEEEeccCccc--ccccEEEEeeeEEEEeccccccCc--ccccceeEEEecCCcEEEEECCCHHH
Confidence            5899999999999999999875432  236999999877655433321100  00111234455665555555444433

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=6.4e-10  Score=74.53  Aligned_cols=40  Identities=18%  Similarity=0.377  Sum_probs=34.7

Q ss_pred             CCCceEEEEEEeCC--eEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGC--SLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~--~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++||||||||+++  .|+||+++.+..+   .|.|+|..+..+.
T Consensus        23 ~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~---~g~I~L~~~~~~~   64 (119)
T 2dhk_A           23 IRGWKSRWFFYDERKCQLYYSRTAQDANP---LDSIDLSSAVFDC   64 (119)
T ss_dssp             SCCCEEEEEEEETTTTEEEEESSTTCCSC---SEEEEGGGCEEEE
T ss_pred             CCCceeEEEEEECCccEEEEECCCCCccc---ccEEECCCCEEEe
Confidence            47999999999998  9999999877655   7999999987654

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.04  E-value=2.4e-10  Score=77.36  Aligned_cols=36  Identities=28%  Similarity=0.503  Sum_probs=31.6

Q ss_pred             CCceEEEEEEeCCeEEEee----CCCcccCCcccceeecccce
Q psy8929           6 HTWTKHWFVLRGCSLLYYR----DPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~----~~~~~~~~~l~g~i~l~~~~   44 (160)
                      |+||||||||++..|+||+    +..+.++   .|.|+|..+.
T Consensus        23 K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p---~G~I~L~g~t   62 (126)
T 1wi1_A           23 KRWKKRFFVLVQVSQYTFAMCSYREKKAEP---QELLQLDGYT   62 (126)
T ss_dssp             CSCEEEEEEEEEEETTEEEEEECCSSSSCC---SEEEECSSCE
T ss_pred             cccceEEEEEeCCEEEEEEcccccccCCCC---ceEEECCCcE
Confidence            7999999999999999999    7766566   7999999864

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.03  E-value=4.9e-10  Score=74.40  Aligned_cols=41  Identities=27%  Similarity=0.612  Sum_probs=35.1

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      .++||||||||+++.|+||+++.+..+   .|.|+|..+..+..
T Consensus        22 ~~~WkkR~fvL~~~~L~yy~~~~~~~~---~g~i~l~~~~~v~~   62 (115)
T 2cod_A           22 KRMFQKRWVKFDGLSISYYNNEKEMYS---KGIIPLSAISTVRV   62 (115)
T ss_dssp             SSCCEEEEEEECSSEEEEEESSCCSSC---CCEEETTTEEEEEE
T ss_pred             CCCCceEEEEEECCEEEEEcCCCCccc---CCEEECCcceEEEe
Confidence            478999999999999999999877555   79999998775553

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.02  E-value=1.3e-09  Score=72.04  Aligned_cols=40  Identities=25%  Similarity=0.527  Sum_probs=34.8

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++||||||||+++.|+||+++.+..+   .|.|+|..+..+.
T Consensus        18 ~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~~~~   57 (113)
T 1pls_A           18 FNTWKPMWVVLLEDGIEFYKKKSDNSP---KGMIPLKGSTLTS   57 (113)
T ss_dssp             SSCCEEEEEEEETTEEEEESSTTCSSC---SEEEESSSCCEES
T ss_pred             CCCceEEEEEEECCEEEEEeCCCCCCc---ceEEEcCCCEEEE
Confidence            478999999999999999999876555   7999999987654

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.02  E-value=1.4e-09  Score=70.67  Aligned_cols=40  Identities=25%  Similarity=0.512  Sum_probs=31.3

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      .++||+|||||+++.|+||+++.+....+ .|.|+|..+..
T Consensus        12 ~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~~-~g~i~L~~~~v   51 (103)
T 3rcp_A           12 LTGWQPRWFVLDNGILSYYDSQDDVCKGS-KGSIKMAVCEI   51 (103)
T ss_dssp             TTCEEEEEEEEETTEEEEESSCC---CCC-SCEEEGGGCEE
T ss_pred             CCCeeceEEEEECCEEEEEecCCcccCCc-ccEEEeeeeEE
Confidence            57899999999999999999997643323 69999987654

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.01  E-value=9.3e-10  Score=73.96  Aligned_cols=39  Identities=28%  Similarity=0.776  Sum_probs=33.6

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      ..++||+|||||+++.|+||+++.+..+   .|.|+|..+..
T Consensus        17 ~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~v   55 (127)
T 1fgy_A           17 RVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENLSI   55 (127)
T ss_dssp             SSCCEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEE
T ss_pred             CCCCeEEEEEEEECCEEEEeCCCCCCCc---ceEEECCceEE
Confidence            3578999999999999999998876555   79999999753

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.00  E-value=7e-10  Score=75.42  Aligned_cols=77  Identities=12%  Similarity=0.258  Sum_probs=46.0

Q ss_pred             CCCCceEEEEEEe---CCeEEEeeCCCc-ccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeC
Q psy8929           4 KKHTWTKHWFVLR---GCSLLYYRDPKA-EESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRD   79 (160)
Q Consensus         4 ~~~~Wkkrwfvl~---~~~L~yy~~~~~-~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~   79 (160)
                      ..++||||||||+   +..|+||+++.+ +....+.|.|+|..+..|.......+     ..++-.|.+-++..-+|+..
T Consensus        28 ~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~-----~~~~~~F~i~t~~r~y~l~A  102 (126)
T 1v5p_A           28 NSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQK-----PKTPFCFVINALSQRYFLQA  102 (126)
T ss_dssp             CSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTS-----CSCSSEEEEECSSCEEEEEC
T ss_pred             CCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccC-----CCCCEEEEEECCCEEEEEEC
Confidence            3689999999999   566777788532 11123379999998776665431111     01223343445556666666


Q ss_pred             CCCccC
Q psy8929          80 PKAEES   85 (160)
Q Consensus        80 ~~~~~~   85 (160)
                      ++..+.
T Consensus       103 ~s~~e~  108 (126)
T 1v5p_A          103 NDQKDL  108 (126)
T ss_dssp             SSHHHH
T ss_pred             CCHHHH
Confidence            555443

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=98.99  E-value=2.6e-10  Score=77.66  Aligned_cols=41  Identities=32%  Similarity=0.576  Sum_probs=33.8

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      .++||||||||+++.|+||+++.++....+.|.|+|..|..
T Consensus        20 ~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~   60 (134)
T 2y7b_A           20 FGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTS   60 (134)
T ss_dssp             EEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCS
T ss_pred             CCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCcc
Confidence            47899999999999999999876644444579999999763

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.99  E-value=2.2e-09  Score=71.14  Aligned_cols=41  Identities=32%  Similarity=0.676  Sum_probs=35.2

Q ss_pred             CCCceEEEEEEe--CCeEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           5 KHTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         5 ~~~Wkkrwfvl~--~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      .++||||||||+  ++.|+||+++.+..+   .|.|+|..+..+..
T Consensus        21 ~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~---~g~i~L~~~~~v~~   63 (117)
T 1v5u_A           21 MKPWKARWFVLDKTKHQLRYYDHRMDTEC---KGVIDLAEVEAVAP   63 (117)
T ss_dssp             SSCCEEEEEEEETTTTEEEEESSSSCSSC---CCEEEGGGEEEEEC
T ss_pred             CCCceeeEEEEECCCCEEEEeecCCCCcc---ceEEEccCcEEEee
Confidence            578999999999  899999999877555   79999999876653

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=98.98  E-value=2.2e-09  Score=72.23  Aligned_cols=67  Identities=18%  Similarity=0.331  Sum_probs=46.4

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccc-cceeeeeeeceEEEEEEeCCEEEEEeCCCCc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWTKHWFVLRGCSLLYYRDPKAE   83 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~-kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~   83 (160)
                      .++||+|||||+++.|+||+++.+..+   .|.|+|..+..+...... +..         .|.+..++.-+++..+...
T Consensus        31 ~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~~v~~~~~~~~~~---------~F~i~~~~r~~~l~a~s~~   98 (126)
T 1fao_A           31 VKTWKTRWFTLHRNELKYFKDQMSPEP---IRILDLTECSAVQFDYSQERVN---------CFCLVFPFRTFYLCAKTGV   98 (126)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCSSC---SEEEEGGGCCEEEEECSSSSSS---------EEEEEETTEEEEEECSSHH
T ss_pred             CCCcccEEEEEECCEEEEeCCCCCCCc---eeEEEccceEEEEecccCCCCC---------EEEEEeCCcEEEEECCCHH
Confidence            578999999999999999998877555   799999998765433221 222         2334455555565555443

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=98.97  E-value=3.5e-10  Score=75.24  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=31.7

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      .++||+|||||+++.|+||+++.+..+   .|.|+|....
T Consensus        17 ~k~Wk~rwfvL~~~~L~~yk~~~~~~p---~~~i~l~~~~   53 (112)
T 3cxb_B           17 KEHWKTCFVVLSNGILYQYPDRTDVIP---LLSVNMGGEQ   53 (112)
T ss_dssp             CCCCEEEEEEEETTEEEEESSSSCCSC---SEEEETTC-C
T ss_pred             CCCceEEEEEEECCEEEEECCCCCCCc---cceEEecCCE
Confidence            589999999999999999999877666   7999998643

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=98.97  E-value=3.5e-10  Score=76.54  Aligned_cols=44  Identities=20%  Similarity=0.494  Sum_probs=33.8

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcc--cC----Ccccceeecccceeecc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAE--ES----GVLDGVVALNNVTSLSE   48 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~--~~----~~l~g~i~l~~~~~~~~   48 (160)
                      .++||+|||||+++.|+||+++...  ..    ..+.|.|+|..|.....
T Consensus        25 ~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~   74 (124)
T 2w2x_D           25 DQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKA   74 (124)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEEC
T ss_pred             CCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEc
Confidence            5789999999999999999986432  11    23479999999875443

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=98.95  E-value=1.9e-09  Score=73.41  Aligned_cols=41  Identities=29%  Similarity=0.643  Sum_probs=31.2

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCccc--------CCcccceeecccceee
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEE--------SGVLDGVVALNNVTSL   46 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~--------~~~l~g~i~l~~~~~~   46 (160)
                      ++|++|||||+++.|+||+++....        ...+.|.|+|..|...
T Consensus        32 k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~   80 (129)
T 2p0d_A           32 KNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALA   80 (129)
T ss_dssp             CCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEE
T ss_pred             CCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEE
Confidence            8999999999999999999985321        1234799999988653

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=2e-09  Score=71.11  Aligned_cols=43  Identities=26%  Similarity=0.684  Sum_probs=35.4

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP   50 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~   50 (160)
                      .++||+|||||+++.|+||+++.+..+   .|.|+|..+..+...+
T Consensus        21 ~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~~v~~~~   63 (115)
T 2dn6_A           21 RKNWTERWFVLKPNIISYYVSEDLKDK---KGDILLDENCCVESLP   63 (115)
T ss_dssp             SSCEEEEEEEECSSCEEEESSTTCSSE---EEEECCCTTCEEEEEC
T ss_pred             CCCcEEeEEEEECCEEEEeCCCCCccc---CcEEEecCcEEEEECC
Confidence            578999999999999999998876555   7999999866555443

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.94  E-value=1.7e-09  Score=75.14  Aligned_cols=41  Identities=22%  Similarity=0.506  Sum_probs=34.1

Q ss_pred             CCceEEEEEEeCC-----eEEEeeCCC-cccCCcccceeecccceeeccc
Q psy8929           6 HTWTKHWFVLRGC-----SLLYYRDPK-AEESGVLDGVVALNNVTSLSEV   49 (160)
Q Consensus         6 ~~Wkkrwfvl~~~-----~L~yy~~~~-~~~~~~l~g~i~l~~~~~~~~~   49 (160)
                      ++||||||||++.     .|.||+++. +..+   .|.|+|..|..+...
T Consensus        38 k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~---~g~I~L~~~~~~~~~   84 (150)
T 1wg7_A           38 RSFKRRFFHLIQLGDGSYNLNFYKDEKISKEP---KGSIFLDSCMGVVQN   84 (150)
T ss_dssp             SSCEEEEEEEEECSSSCEEEEEESSSCCSSCC---SEEECTTTCCEECCC
T ss_pred             cCeeEEEEEEecCCCCceEEEEECCCCCCCCc---CcEEecccCEEEecC
Confidence            6899999999987     999999886 4444   799999998776543

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=98.92  E-value=1.5e-09  Score=77.36  Aligned_cols=42  Identities=21%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCc-ccCCcccceeecccceeec
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKA-EESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~-~~~~~l~g~i~l~~~~~~~   47 (160)
                      ++||+|||||+++.|+||+++.+ +....+.|.|+|+.+..+.
T Consensus        22 k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve   64 (169)
T 1btk_A           22 LNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVE   64 (169)
T ss_dssp             CCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEE
T ss_pred             CCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEE
Confidence            68999999999999999998422 1122337999999876543

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.91  E-value=4.8e-09  Score=69.43  Aligned_cols=40  Identities=30%  Similarity=0.609  Sum_probs=34.2

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceee
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL   46 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~   46 (160)
                      ..++||+|||||+++.|+||+++.+..+   .|.|+|..+..+
T Consensus        20 ~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~v~   59 (118)
T 1v89_A           20 IVKNWQQRYFVLRAQQLYYYKDEEDTKP---QGCMYLPGCTIK   59 (118)
T ss_dssp             SSSCEEEEEEEEETTEEEEESSSSCCSC---SEEECSTTEEEE
T ss_pred             CCCCccEEEEEEECCEEEEEeCCCCCCc---eEEEECCCCEEE
Confidence            3578999999999999999999877555   799999987654

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=98.90  E-value=4.8e-09  Score=70.30  Aligned_cols=41  Identities=22%  Similarity=0.512  Sum_probs=35.3

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      .++||+|||||+++.|+||+++.+..+   .|.|+|..+..+..
T Consensus        27 ~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~l~~~~~v~~   67 (125)
T 1eaz_A           27 MKNWKRRYFQLDENTIGYFKSELEKEP---LRVIPLKEVHKVQE   67 (125)
T ss_dssp             TCCEEEEEEEECSSEEEEESSTTCSSC---SEEEEGGGCCEEEE
T ss_pred             CCCcceEEEEEeCCEEEEEcCCCCCcc---eeEEEcccceEEee
Confidence            478999999999999999999877555   79999999876554

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=98.90  E-value=3.8e-09  Score=73.25  Aligned_cols=38  Identities=24%  Similarity=0.559  Sum_probs=33.2

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceee
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL   46 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~   46 (160)
                      ++||||||||+++.|+||+++.+..+   .|.|+|..+..+
T Consensus        35 k~WkkR~fvL~~~~L~yyk~~~~~~~---~g~i~L~~~~v~   72 (148)
T 1u5f_A           35 FEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVR   72 (148)
T ss_dssp             CSEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEE
T ss_pred             CCceeEEEEEECCEEEEEcCCCCccc---ceEEEcCCcEEE
Confidence            69999999999999999999877555   799999998643

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.90  E-value=4.8e-09  Score=68.82  Aligned_cols=37  Identities=22%  Similarity=0.531  Sum_probs=28.5

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNV   43 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~   43 (160)
                      .++||||||||+++.|+||+++.+ .. ...+.|+|..|
T Consensus        19 ~k~Wk~RwfvL~~~~L~yyk~~~~-~~-~~~~~i~l~~~   55 (107)
T 2cof_A           19 NSQWKSRWCSVRDNHLHFYQDRNR-SK-VAQQPLSLVGC   55 (107)
T ss_dssp             TTEEEEEEEEECSSCEEEECSSTT-CS-EEEEEECTTTC
T ss_pred             CCCcceEEEEEECCEEEEEeCCcc-cC-CCeeEEeccce
Confidence            578999999999999999998865 22 11456677665

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=5.6e-09  Score=69.14  Aligned_cols=38  Identities=37%  Similarity=0.714  Sum_probs=33.5

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      ..++||+|||||+++.|+||+++.+..+   .|.|+|..+.
T Consensus        24 ~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~   61 (117)
T 2d9y_A           24 GVKQWNKRWFVLVDRCLFYYKDEKEESI---LGSIPLLSFR   61 (117)
T ss_dssp             SSSCEEEEEEEEETTEEEEESSTTCCSC---CEEEECSSCE
T ss_pred             CCCCceEEEEEECCCEEEEECCCCCCCc---CCEEEeCCeE
Confidence            3578999999999999999999877665   7999999876

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=98.89  E-value=3.1e-09  Score=69.25  Aligned_cols=38  Identities=21%  Similarity=0.566  Sum_probs=33.6

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceee
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL   46 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~   46 (160)
                      ++|++|||||+++.|+||+++.+..+   .|.|+|..+...
T Consensus        21 ~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~v~   58 (108)
T 1u5d_A           21 SEWQKRWCVVSRGLFYYYANEKSKQP---KGTFLIKGYSVR   58 (108)
T ss_dssp             EEEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEE
T ss_pred             cCceeeEEEEeCCEEEEecCCCCCCC---CEEEEecceEEE
Confidence            78999999999999999999877555   799999998743

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.89  E-value=7.2e-09  Score=69.88  Aligned_cols=83  Identities=17%  Similarity=0.357  Sum_probs=70.4

Q ss_pred             eeeeceEEEEEEeC------CEEEEEeCCCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCC
Q psy8929          58 QITTWTKHWFVLRG------CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVT  127 (160)
Q Consensus        58 ~~~~WkkrwfvL~~------~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s  127 (160)
                      ....|++++++|..      -.|.||..++...+   +..|++..+..|.....    .+.|.|.|.+.++..|+|.|.+
T Consensus        38 ~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKp---K~~i~cs~I~EVR~tt~LEmPD~~nTFVlK~~n~~eyi~ea~d  114 (136)
T 1v5m_A           38 GTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRP---KVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETID  114 (136)
T ss_dssp             CSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSC---SSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCBEEEECSS
T ss_pred             cccchhheeeEEEEccCCCceEEEEecCCcccCC---ccccchhhhhhhhhccccccCCccceEEEEecCCcEEEEEcCC
Confidence            34689999999964      35789999998887   88999999887776533    4789999999887799999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy8929         128 AGIRNNWMSAIKRTAA  143 (160)
Q Consensus       128 ~~e~~~Wi~al~~~~~  143 (160)
                      +.+++.|+..|+.++.
T Consensus       115 ~~q~~sWla~Ir~C~~  130 (136)
T 1v5m_A          115 SLQKHSWVADIQGCVD  130 (136)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            9999999999999886

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=98.88  E-value=7e-09  Score=67.83  Aligned_cols=38  Identities=29%  Similarity=0.528  Sum_probs=32.2

Q ss_pred             CCCceEEEEEEeCC--eEEEeeCCCcccCCcccceeeccccee
Q psy8929           5 KHTWTKHWFVLRGC--SLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~--~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      .++||+|||||+++  .|.||+++.+..+   .|.|+|..+..
T Consensus        20 ~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~---~g~i~L~~~~v   59 (109)
T 2i5f_A           20 RKNWKVRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVV   59 (109)
T ss_dssp             TCCEEEEEEEEETTTTEEEEECTTSCSSC---SEEEECTTCEE
T ss_pred             CCCceEEEEEEeCCCcEEEEECCCCCCCc---cEEEECCCCEE
Confidence            57899999999986  9999998866555   79999999653

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=98.87  E-value=4.4e-09  Score=70.86  Aligned_cols=43  Identities=19%  Similarity=0.216  Sum_probs=33.7

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++|++|||||++..|+||+++.......+.|.|+|.+|....
T Consensus        19 ~k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~   61 (120)
T 4a6h_A           19 LKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTE   61 (120)
T ss_dssp             TTEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEE
T ss_pred             CCCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCCCEEEE
Confidence            5789999999999999999987643222236999999876544

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=6.8e-09  Score=69.32  Aligned_cols=38  Identities=37%  Similarity=0.714  Sum_probs=33.4

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      ..++||+|||||+++.|+||+++.+..+   .|.|+|..+.
T Consensus        35 ~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~   72 (122)
T 2yry_A           35 GVKQWNKRWFVLVDRCLFYYKDEKEESI---LGSIPLLSFR   72 (122)
T ss_dssp             SSCCEEEEEEEEETTEEEEESSTTCCSC---CEEEESTTCC
T ss_pred             CCCCcEEEEEEEeCCEEEEECCCCCCCc---ccEEEcCCCE
Confidence            3578999999999999999999877665   7999999875

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=98.85  E-value=6.6e-09  Score=76.54  Aligned_cols=41  Identities=22%  Similarity=0.506  Sum_probs=35.5

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      .++||||||||+++.|+||+++.+..+   .|.|+|..+..+..
T Consensus       123 ~k~WkkRwfVL~~~~L~Yyk~~~~~~p---~g~I~L~~~~~v~~  163 (211)
T 1u5e_A          123 GFEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMN  163 (211)
T ss_dssp             TCCCEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEEC
T ss_pred             CCCcEeEEEEEECCEEEEEcCCCCccc---eEEEEeCCcEEEEc
Confidence            369999999999999999999987655   79999999877653

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=98.83  E-value=4e-09  Score=80.24  Aligned_cols=58  Identities=19%  Similarity=0.300  Sum_probs=40.3

Q ss_pred             CCCCCceEEEEEEeCC-------eEEEeeCCCcccC--Ccccceeecccceeecccccc-cceeeeee
Q psy8929           3 NKKHTWTKHWFVLRGC-------SLLYYRDPKAEES--GVLDGVVALNNVTSLSEVPVA-RNFGFQIT   60 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~-------~L~yy~~~~~~~~--~~l~g~i~l~~~~~~~~~~~~-kk~g~~~~   60 (160)
                      .|.|+||||||||++.       .|.||+++.+...  ....|.|+|..|..|...... ++..|.+.
T Consensus        17 ~K~K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~~~~~~~F~I~   84 (264)
T 1qqg_A           17 RKPKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALY   84 (264)
T ss_dssp             ECTTTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEE
T ss_pred             EECCCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccCCCCCcEEEEE
Confidence            3448999999999988       9999998876111  123799999998876544322 33444443

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=98.83  E-value=6.1e-09  Score=69.62  Aligned_cols=39  Identities=36%  Similarity=0.750  Sum_probs=33.6

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      ..++||+|||||+++.|+||+++.+..+   .|.|+|..+..
T Consensus        24 ~~~~WkkR~fvL~~~~L~yy~~~~~~~~---~g~i~l~~~~v   62 (123)
T 1upq_A           24 GLRLWKRRWFVLSGHCLFYYKDSREESV---LGSVLLPSYNI   62 (123)
T ss_dssp             SSCCEEEEEEEEETTEEEEESSTTCCSC---CEEEEGGGCEE
T ss_pred             CCCCceeEEEEEeCCEEEEECCCCCccc---ceEEECCCCEE
Confidence            3578999999999999999999877655   79999998754

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=4.4e-09  Score=70.41  Aligned_cols=39  Identities=21%  Similarity=0.436  Sum_probs=31.8

Q ss_pred             CCCceEEEEEEe--CCeEEEeeCCCcccCCcccceeecccce
Q psy8929           5 KHTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~--~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      .++||||||||+  ++.|.||+++.+.... +.|.|+|..+.
T Consensus        21 ~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~-~~g~I~L~~~~   61 (120)
T 2d9x_A           21 VTGWQYRFFVLNNEAGLLEYFVNEQSRNQK-PRGTLQLAGAV   61 (120)
T ss_dssp             TTEEEEEEEEECTTTCEEEEESSGGGSSSC-CSEEEECTTCC
T ss_pred             CCCceEEEEEEECCCCEEEEEecCcccCCC-ccceEEcceEE
Confidence            478999999999  5899999988764222 36999999975

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=98.82  E-value=7e-09  Score=70.05  Aligned_cols=40  Identities=28%  Similarity=0.513  Sum_probs=32.9

Q ss_pred             CCCCceEEEEEEeCC--eEEEeeCCCcccCCcccceeecccceee
Q psy8929           4 KKHTWTKHWFVLRGC--SLLYYRDPKAEESGVLDGVVALNNVTSL   46 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~--~L~yy~~~~~~~~~~l~g~i~l~~~~~~   46 (160)
                      ..++||+|||||+++  .|+||+++.+..+   .|.|+|..|...
T Consensus        30 ~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~---~g~i~L~~~~v~   71 (129)
T 1x05_A           30 RRKNWKVRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVVT   71 (129)
T ss_dssp             SCCCCEEEEEEEEETTTEEEEECSSCCSSC---SEEEECTTCEEE
T ss_pred             CCCCCeeEEEEEeCCCCEEEEECCCCCCcc---eeEEEccCCEEE
Confidence            357899999999975  8999998866555   799999986543

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=98.80  E-value=9.1e-09  Score=69.15  Aligned_cols=38  Identities=21%  Similarity=0.513  Sum_probs=30.9

Q ss_pred             CCCceEEEEEEe-CCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           5 KHTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl~-~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      .++||||||||+ ++.|+||+++.+..+   .|.|+|..+..
T Consensus        21 ~k~WkkRwfvL~~~~~L~yy~~~~~~~~---~g~i~L~~~~~   59 (125)
T 1unq_A           21 IKTWRPRYFLLKNDGTFIGYKERPQDVD---QREAPLNNFSV   59 (125)
T ss_dssp             SCCEEEEEEEEETTSEEEEESSCCCSHH---HHTSCSEEEEC
T ss_pred             ccCccCcEEEEecCCEEEEEeCCCCCCC---CceeEccceeE
Confidence            578999999999 579999998876544   68888887653

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=98.78  E-value=5.8e-09  Score=70.22  Aligned_cols=39  Identities=38%  Similarity=0.705  Sum_probs=33.2

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      ..++||||||||+++.|+||+++.+..+   .|.|+|..+..
T Consensus        34 ~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~v   72 (128)
T 2dkp_A           34 GMKLWKKRWFVLSDLCLFYYRDEKEEGI---LGSILLPSFQI   72 (128)
T ss_dssp             SSCCEEEEEEEEETTEEEEESSTTCCSE---EEEECGGGSEE
T ss_pred             CCCCceeEEEEEeCCEEEEECCCCCccc---ceEEEcCceEE
Confidence            3578999999999999999999877655   79999987653

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.78  E-value=4.5e-08  Score=66.84  Aligned_cols=84  Identities=13%  Similarity=0.249  Sum_probs=65.8

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAI  138 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al  138 (160)
                      .-+.|+|+|=++.|.|.+.......=...|.|+|.+.. |...++  ..+++|+|..+...++.+.|.|.+|+++||.+|
T Consensus        43 ~~~eR~l~LF~~~Ll~~s~~~~~~~f~~kgklPL~g~~-V~~~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L  121 (132)
T 1v61_A           43 EKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMV-VNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQL  121 (132)
T ss_dssp             CCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCB-CSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHH
T ss_pred             cceEEEEEEcCCeEEEEEecCCCceEEEEEEEecceeE-EEeccccccCccEEEEecCCCceEEEEeCCHHHHHHHHHHH
Confidence            34689999999999888754321111236999999998 454433  478999999876689999999999999999999


Q ss_pred             HHHhccc
Q psy8929         139 KRTAAMS  145 (160)
Q Consensus       139 ~~~~~~~  145 (160)
                      +.++...
T Consensus       122 ~~~i~~~  128 (132)
T 1v61_A          122 NRLTKSG  128 (132)
T ss_dssp             HHHHTTS
T ss_pred             HHHHhhc
Confidence            9998744

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=98.78  E-value=8.6e-09  Score=67.89  Aligned_cols=37  Identities=27%  Similarity=0.562  Sum_probs=30.5

Q ss_pred             CCCCceEEEEEE-eCCeEEEeeCCCcccCCcccceeecccc
Q psy8929           4 KKHTWTKHWFVL-RGCSLLYYRDPKAEESGVLDGVVALNNV   43 (160)
Q Consensus         4 ~~~~Wkkrwfvl-~~~~L~yy~~~~~~~~~~l~g~i~l~~~   43 (160)
                      ..++|||||||| +++.|+||+++.+..+   .|.|++...
T Consensus        17 ~~k~WkkR~fvL~~~~~L~yyk~~~~~~~---~g~i~l~~~   54 (112)
T 3aj4_A           17 ILKRWKKNWFDLWSDGHLIYYDDQTRQNI---EDKVHMPMD   54 (112)
T ss_dssp             SSCCEEEEEEEECTTSEEEEESSTTCCSE---EEEEEHHHH
T ss_pred             CCCCeeceEEEEeeCCEEEEEcCCCCCCC---Ccccccccc
Confidence            357999999999 8999999999877555   688877753

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=98.78  E-value=1.1e-08  Score=71.66  Aligned_cols=46  Identities=11%  Similarity=0.289  Sum_probs=37.7

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeeccccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV   51 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~   51 (160)
                      -|.||+||||++|..|.||+++.+....+ .|.|+|..|+......+
T Consensus        63 LKgyKryWFv~kd~~LsyYKskEe~~geP-~~~I~LrGCEVtpDVnv  108 (173)
T 4f7h_A           63 LKGYKQYWCTFKDTSISCYKSKEESSGTP-AHQMNLRGCEVTPDVNI  108 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEESCGGGCSSCC-SEEEECTTCEEEEEEET
T ss_pred             cccceeEEEEEeCCEEEEEcCHhHhcCCC-ceEEecCceEEeccccc
Confidence            47899999999999999999997755433 69999999997665433

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=98.77  E-value=1.2e-08  Score=70.86  Aligned_cols=52  Identities=23%  Similarity=0.503  Sum_probs=39.4

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeeccccc-ccceee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGF   57 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~-~kk~g~   57 (160)
                      -|+||+||||++|..|.||+++.+... ...+.|+|..|+...+.-. ..|++.
T Consensus        42 LKgfKryWfv~kDt~LsyYKSkEe~~g-eP~~~inLrGCEVtPDVnva~~Kf~i   94 (165)
T 4bbk_A           42 LKACKQYWFVFKDTSIAYFKNKELEQG-EPIEKLNLRGCEIVPDVNVSGRKFGI   94 (165)
T ss_dssp             --CCEEEEEEEETTEEEEESSGGGTTS-CCSEEEECTTCEEEEEEETTTTEEEE
T ss_pred             cccceeEEEEEeCCEEEEEcCHHHhcC-CCceEEecCccEEecccccccceeeE
Confidence            478999999999999999999977654 4459999999997665443 344444

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.76  E-value=6.3e-09  Score=70.74  Aligned_cols=34  Identities=29%  Similarity=0.731  Sum_probs=28.5

Q ss_pred             CCCceEEEEEE-eCCeEEEeeCCCcccCCcccceeecc
Q psy8929           5 KHTWTKHWFVL-RGCSLLYYRDPKAEESGVLDGVVALN   41 (160)
Q Consensus         5 ~~~Wkkrwfvl-~~~~L~yy~~~~~~~~~~l~g~i~l~   41 (160)
                      .++|||||||| +++.|+||+++.+...   .|.|.+.
T Consensus        21 ~k~WkkRwFVL~~~~~L~Yyk~~~~~~~---~g~i~l~   55 (130)
T 2d9v_A           21 LRRWKRNWFALWLDGTLGYYHDETAQDE---EDRVVIH   55 (130)
T ss_dssp             SCCEEEEEEEEETTTEEEEESSSSTTSE---EEEEECT
T ss_pred             cCCceeeEEEEccCCEEEEEeCCCCCCc---CceEecc
Confidence            57999999999 8999999999876554   6777665

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.1e-08  Score=68.44  Aligned_cols=43  Identities=19%  Similarity=0.447  Sum_probs=34.9

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      -|+||+|||||+|..|+||++..+.. +.+.|.|+|..|....+
T Consensus        25 lK~~KrrWFvlk~~~L~YyK~kee~~-~ePig~I~L~gceV~pd   67 (137)
T 2ys3_A           25 LKGYRQHWVVFKETTLSYYKSQDEAP-GDPIQQLNLKGCEVVPD   67 (137)
T ss_dssp             SSSSCCCEEEECSSCEEEESSTTTTT-SCCSCCBCTTTCEEEEC
T ss_pred             cccceeEEEEEeCCEEEEECCchhcc-CCCceEEECCCCEEecc
Confidence            46899999999999999999887653 23369999999984444

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=98.73  E-value=2e-08  Score=70.98  Aligned_cols=37  Identities=24%  Similarity=0.521  Sum_probs=24.0

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN   42 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~   42 (160)
                      .++||+|||||+++.|+||+++.+... ...|.|+|..
T Consensus        26 ~k~WkkRwfvL~~~~L~yyk~~~~~~~-~~~g~i~l~~   62 (168)
T 2j59_M           26 IRPWKQMYVVLRGHSLYLYKDKREQTT-PSEEEQPISV   62 (168)
T ss_dssp             --CCEEEEEEEETTEEEEESCTTCC---------CEEC
T ss_pred             CCCceEEEEEEeCCEEEEEECCccccc-ccCCceEecc
Confidence            578999999999999999999865222 1258887776

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=98.71  E-value=2.7e-08  Score=78.39  Aligned_cols=38  Identities=29%  Similarity=0.812  Sum_probs=33.3

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      ..++||||||||+++.|+||+++.+..+   .|.|+|..+.
T Consensus       225 ~~k~WkkRwFVL~~~~L~Yyk~~~~~~p---~G~I~L~~~~  262 (347)
T 2r09_A          225 RVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENLS  262 (347)
T ss_dssp             SSCCEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCE
T ss_pred             CcccceeEEEEEcCCEEEEEcCCCccCC---cEEEEcCCeE
Confidence            3578999999999999999999876555   7999999876

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.71  E-value=2.8e-08  Score=66.96  Aligned_cols=37  Identities=27%  Similarity=0.493  Sum_probs=30.3

Q ss_pred             CCCceEEEEEEe--CCeEEEeeCC-CcccCCcccceeecccce
Q psy8929           5 KHTWTKHWFVLR--GCSLLYYRDP-KAEESGVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~--~~~L~yy~~~-~~~~~~~l~g~i~l~~~~   44 (160)
                      .++||||||||+  +..|+||+++ .+..+   .|.|+|..|.
T Consensus        31 ~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~---~g~i~L~~~~   70 (129)
T 1x1g_A           31 RKNWKVRRFVLRKDPAFLHYYDPSKEENRP---VGGFSLRGSL   70 (129)
T ss_dssp             SSSEEEEEEEEEESSCEEEEECSSSCCSSC---SCCEESTTCC
T ss_pred             CCCeeeEEEEEeCCCCeEEEeCCCCcCCcc---ceEEECcCCE
Confidence            689999999999  4799999987 44444   7999999754

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=5.5e-08  Score=64.42  Aligned_cols=64  Identities=5%  Similarity=0.098  Sum_probs=40.0

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCCcc
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKAEE   84 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~   84 (160)
                      ++||||||||+++.|+||+++.+..    .+.|++-.+.. ...+ .++.         .|-+.++...+|+..++..+
T Consensus        25 k~WkkR~fvL~~~~L~yyk~~~~~~----~~~i~l~~~~v-~~~~-~~~~---------~F~I~~~~r~~~l~a~s~~e   88 (114)
T 2da0_A           25 KVWQRRKCSVKNGILTISHATSNRQ----PAKLNLLTCQV-KPNA-EDKK---------SFDLISHNRTYHFQAEDEQD   88 (114)
T ss_dssp             CCEEEEEEEEETTEEEECCSSCCSC----CEEEETTTSEE-EECS-SSSS---------CEEEEETTEEEEEECSSHHH
T ss_pred             CCceeEEEEEeCCEEEEEcCCCCCC----CCEEEeeeeEE-EECC-CCCC---------EEEEEcCCcEEEEEcCCHHH
Confidence            7999999999999999999975532    36666665542 2111 1222         23344566666666555433

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=98.67  E-value=4.3e-08  Score=63.66  Aligned_cols=41  Identities=20%  Similarity=0.389  Sum_probs=30.4

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccC---Ccccceeecccce
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEES---GVLDGVVALNNVT   44 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~---~~l~g~i~l~~~~   44 (160)
                      ..++||+|||||+++.|+||+++.+...   ....+.|+|..+.
T Consensus        19 ~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~   62 (106)
T 1btn_A           19 SSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI   62 (106)
T ss_dssp             SCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCE
T ss_pred             CCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCE
Confidence            3688999999999999999998864321   1124678887754

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=98.67  E-value=5.9e-08  Score=73.74  Aligned_cols=41  Identities=20%  Similarity=0.591  Sum_probs=30.8

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcc---cCCcccceeeccccee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAE---ESGVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~---~~~~l~g~i~l~~~~~   45 (160)
                      .++||+|||||+++.|+||+++...   ....+.|.|+|..+..
T Consensus        36 ~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v   79 (263)
T 3a8p_A           36 RRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIV   79 (263)
T ss_dssp             TCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEE
T ss_pred             CCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEE
Confidence            5799999999999999999986321   1123369999987654

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.62  E-value=5.1e-08  Score=65.34  Aligned_cols=40  Identities=33%  Similarity=0.536  Sum_probs=29.9

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCC-c--ccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESG-V--LDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~-~--l~g~i~l~~~~   44 (160)
                      .++||+|||||+++.|+||+++.+...+ .  ....|+|..+.
T Consensus        29 ~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~   71 (123)
T 1wjm_A           29 NRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQ   71 (123)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCE
T ss_pred             CCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcE
Confidence            6899999999999999999998765432 1  12457776654

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=98.60  E-value=1.1e-07  Score=64.05  Aligned_cols=41  Identities=29%  Similarity=0.596  Sum_probs=31.9

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccC---------Ccccceeeccccee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEES---------GVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~---------~~l~g~i~l~~~~~   45 (160)
                      .++|++|||||+++.|+||+++.+...         ..+.+.|+|..|..
T Consensus        28 ~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v   77 (124)
T 3pp2_A           28 KKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATL   77 (124)
T ss_dssp             SCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEE
T ss_pred             CCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEE
Confidence            469999999999999999998876432         13468999988654

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=98.57  E-value=1.7e-07  Score=63.48  Aligned_cols=69  Identities=20%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCC-------cccCCcccceeecccceeecccccc-cceeeeeeeceEEEEEEe---CCE
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPK-------AEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWTKHWFVLR---GCS   73 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~-------~~~~~~l~g~i~l~~~~~~~~~~~~-kk~g~~~~~WkkrwfvL~---~~~   73 (160)
                      .++|+||||||++..|+||+...       +.++ .+.|.|+|.++... ..+.. ++.-          |.|.   .+.
T Consensus        21 ~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~-~P~~~i~L~g~~V~-~~e~~~~~~~----------F~L~~~~~G~   88 (126)
T 2dtc_A           21 LSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKS-TPGKKVSIVGWMVQ-LPDDPEHPDI----------FQLNNPDKGN   88 (126)
T ss_dssp             SCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCS-SCSEEEECTTCEEE-CCCCTTSTTE----------EEEECTTSCS
T ss_pred             ccCcccEEEEEeCCEEEEEccccccccccccccc-CCCceEEeCCCEEE-ecCCCCCCCE----------EEEeeCCCCC
Confidence            57899999999999999999663       1112 33689999987654 33322 2223          3333   356


Q ss_pred             EEEEeCCCCccC
Q psy8929          74 LLYYRDPKAEES   85 (160)
Q Consensus        74 L~yyk~~~~~~~   85 (160)
                      .|.+..+...+.
T Consensus        89 ~Y~fqA~s~~~~  100 (126)
T 2dtc_A           89 VYKFQTGSRFHA  100 (126)
T ss_dssp             EEEEECSSHHHH
T ss_pred             EEEEeCCCHHHH
Confidence            677776665443

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=98.55  E-value=3e-07  Score=67.36  Aligned_cols=85  Identities=18%  Similarity=0.322  Sum_probs=68.3

Q ss_pred             eeeceEEEEEEeC------C-EEEEEeCCCCccC-CccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCH
Q psy8929          59 ITTWTKHWFVLRG------C-SLLYYRDPKAEES-GVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTA  128 (160)
Q Consensus        59 ~~~WkkrwfvL~~------~-~L~yyk~~~~~~~-~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~  128 (160)
                      .+.||.||+||+.      . .|..|+|..+... +..+.+|.|..+..++..-.  +..+++.|++.+ .++.|.++++
T Consensus        20 ~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~ldk~s~TlAIIc~d-~~~vLAFds~   98 (224)
T 3ml4_A           20 GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIICLS-QAVMLGFDSH   98 (224)
T ss_dssp             --CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEETTEEEEEEEEESS-CEEEEECSSH
T ss_pred             CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccccCcccEEEEEecC-cEEEEEeCCH
Confidence            4689999999985      2 5788999888433 23378899999998876533  678999999986 6889999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q psy8929         129 GIRNNWMSAIKRTAAM  144 (160)
Q Consensus       129 ~e~~~Wi~al~~~~~~  144 (160)
                      +++..|-..|+.....
T Consensus        99 e~l~~W~~~l~~slGe  114 (224)
T 3ml4_A           99 EAMCAWDTRIRYALGE  114 (224)
T ss_dssp             HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhhccCC
Confidence            9999999999987653

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=98.53  E-value=2.5e-08  Score=66.92  Aligned_cols=40  Identities=20%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccC--C-c--ccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEES--G-V--LDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~--~-~--l~g~i~l~~~~   44 (160)
                      .++||+|||||+++.|+||+++.+...  . .  ..+.|+|..+.
T Consensus        29 ~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~   73 (122)
T 1dro_A           29 NRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAA   73 (122)
T ss_dssp             CCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCC
T ss_pred             CCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCE
Confidence            689999999999999999999976543  1 1  13678887753

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=98.49  E-value=1.4e-06  Score=59.39  Aligned_cols=81  Identities=10%  Similarity=0.180  Sum_probs=58.7

Q ss_pred             eEEEEEEeCCE-EEEEeCCCCccCCccceeEEcCCceeeeecCC-----------CCCceEEEEeCCC-cEEEEEcCCHH
Q psy8929          63 TKHWFVLRGCS-LLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----------ARNFGFQITTWDS-KRTILSAVTAG  129 (160)
Q Consensus        63 kkrwfvL~~~~-L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-----------~~~~~F~i~t~~~-r~~~l~a~s~~  129 (160)
                      +.|+|+|.+.. +.+|.+... ..+...+.|+|..+..|.....           ....+|.|+..+. ++++|.|+|++
T Consensus        29 k~r~f~l~~~~~~~w~~s~~~-~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~~k~LdlvA~s~~  107 (131)
T 1mai_A           29 RERFYKLQEDCKTIWQESRKV-MRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPA  107 (131)
T ss_dssp             EEEEEEECTTSSEEEECCCCT-TCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSHH
T ss_pred             eeEEEEECCCCCEEEeCCcCC-CCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCCCceEEEEeCCHH
Confidence            56889998754 445532111 0111268999999998877542           2457999998753 69999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy8929         130 IRNNWMSAIKRTAAM  144 (160)
Q Consensus       130 e~~~Wi~al~~~~~~  144 (160)
                      |++.|+..|+..+..
T Consensus       108 e~~~Wv~gL~~L~~~  122 (131)
T 1mai_A          108 DAQHWVQGLRKIIHH  122 (131)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998763

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=98.49  E-value=8.7e-08  Score=73.13  Aligned_cols=36  Identities=22%  Similarity=0.566  Sum_probs=29.1

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccc
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNN   42 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~   42 (160)
                      ..++||||||||+++.|+||+++.+..+   .|.|+|..
T Consensus       180 ~~k~WkkR~fvL~~~~L~yyk~~~~~~~---~~~i~l~~  215 (291)
T 3tca_A          180 GKKSWKRRYFLLRASGIYYVPKGKTKTS---RDLACFIQ  215 (291)
T ss_dssp             TSSCEEEEEEEECSSEEEECCTTCCSST---TTCEEEEE
T ss_pred             CCCCceEEEEEEeCCEEEEEecCccccc---cCceeecc
Confidence            3578999999999999999999887766   45555543

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=98.49  E-value=8.5e-08  Score=64.81  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=18.2

Q ss_pred             CCCceEEEEEEeC-CeEEEeeCC
Q psy8929           5 KHTWTKHWFVLRG-CSLLYYRDP   26 (160)
Q Consensus         5 ~~~Wkkrwfvl~~-~~L~yy~~~   26 (160)
                      .++||+|||||++ +.|+||++.
T Consensus        19 ~k~WkkRwFvL~~~~~l~Y~~~~   41 (128)
T 2rlo_A           19 NKEWKKKYVTLSSNGFLLYHPSI   41 (128)
T ss_dssp             TCCEEEEEEEEETTTEEEEESSH
T ss_pred             cCCccEEEEEEeCCCEEEEecch
Confidence            4789999999995 778888763

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=98.45  E-value=1.2e-07  Score=63.49  Aligned_cols=43  Identities=16%  Similarity=0.421  Sum_probs=33.1

Q ss_pred             CC-CceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KH-TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~-~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .+ +|+||||||++..|+||+++.+.....+.|.|||+.+..+.
T Consensus        16 ~k~~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~   59 (117)
T 2rov_A           16 KKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVR   59 (117)
T ss_dssp             SCCCCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEE
T ss_pred             cCCCcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEE
Confidence            45 89999999999999999986544233347999998766543

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=98.45  E-value=2.8e-07  Score=73.35  Aligned_cols=37  Identities=14%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             CCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceee
Q psy8929           6 HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSL   46 (160)
Q Consensus         6 ~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~   46 (160)
                      ++|+||||||+++.|+||+++ +..+   .|.|+|..|...
T Consensus       295 ~~WkkRwfvL~~~~L~y~k~~-~~~~---~~~i~l~~~~v~  331 (385)
T 2q13_A          295 STWDRQFYFTQGGNLMSQARG-DVAG---GLAMDIDNCSVM  331 (385)
T ss_dssp             -CCEEEEEEEETTEEEEECSS-CSSC---EEEEECTTCEEE
T ss_pred             CCceeEEEEEECCEEEEecCC-CcCC---CceEEccceEEE
Confidence            479999999999999999994 3333   589999987643

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.31  E-value=9.6e-06  Score=53.80  Aligned_cols=78  Identities=15%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             EEEEEEeCCEEEEEeCCCCc-cCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy8929          64 KHWFVLRGCSLLYYRDPKAE-ESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR  140 (160)
Q Consensus        64 krwfvL~~~~L~yyk~~~~~-~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~  140 (160)
                      +++|.|=...|.|..-.... .+-.....++|.+.. |..+++  .-+++|.|.+.. +.+.|+|+|.+|..+||.+|++
T Consensus        27 ~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~-v~d~~d~~~~~n~f~i~~~~-~s~~~~aes~~eK~~Wl~~~~~  104 (113)
T 1zc3_B           27 RVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLA-VVNVKDNPPMKDMFKLLMFP-ESRIFQAENAKIKREWLEVLEE  104 (113)
T ss_dssp             EEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCE-EEEECCBTTBSSEEEEEETT-EEEEEECSSHHHHHHHHHHHHH
T ss_pred             cEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCE-EEECCCCcccceEEEEEeCC-ceEEEEcCCHHHHHHHHHHHHH
Confidence            45666666566665542221 101224568899977 444433  468999999875 7999999999999999999999


Q ss_pred             Hhc
Q psy8929         141 TAA  143 (160)
Q Consensus       141 ~~~  143 (160)
                      ++.
T Consensus       105 a~~  107 (113)
T 1zc3_B          105 TKR  107 (113)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.28  E-value=1.6e-05  Score=54.54  Aligned_cols=83  Identities=12%  Similarity=0.013  Sum_probs=59.5

Q ss_pred             eceEEEEEEeCCEEEEEeC---CCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCC-C----cEEEEEcCCHHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRD---PKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWD-S----KRTILSAVTAGIRN  132 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~---~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~-~----r~~~l~a~s~~e~~  132 (160)
                      +-+.|+|.|=.+.|.|-|-   .+....=...+.++|.+..........-+|+|.|.... |    +++.|+|+|.+|+.
T Consensus        32 g~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~  111 (140)
T 3qwm_A           32 GLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRK  111 (140)
T ss_dssp             TTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECCSSCTTEEEEEECCTTSCCEEEEEEECSSHHHHH
T ss_pred             cccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccCCCCceEEEEEecCCCCcceEEEEEECCCHHHHH
Confidence            3467888887777777751   11111112368899999884333333578999999753 2    68999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8929         133 NWMSAIKRTAA  143 (160)
Q Consensus       133 ~Wi~al~~~~~  143 (160)
                      .||.+|+.+|.
T Consensus       112 rwi~dL~esI~  122 (140)
T 3qwm_A          112 KFTDDLRESIA  122 (140)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999986

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=98.25  E-value=1.1e-06  Score=70.67  Aligned_cols=38  Identities=21%  Similarity=0.503  Sum_probs=26.6

Q ss_pred             CCCCceEEEEEEe-CCeEEEeeCCCcccCCcccceeecccce
Q psy8929           4 KKHTWTKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         4 ~~~~Wkkrwfvl~-~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      .-++||||||||+ ++.|+||++..+...   .|.|+|..+.
T Consensus        18 ~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~---~~~i~l~~~~   56 (446)
T 4ejn_A           18 YIKTWRPRYFLLKNDGTFIGYKERPQDVD---QREAPLNNFS   56 (446)
T ss_dssp             TTTEEEEEEEEEETTSBEEEESSCC----------CCCGGGB
T ss_pred             ccccccceEEEEeeCCEEEEEecCCCCCc---cCcccccCcc
Confidence            3578999999998 899999999877655   6888887743

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=98.24  E-value=9.3e-07  Score=70.85  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      .++|+||||||+++.|+||+.+... .   .+.|+|..|..
T Consensus       317 ~~~W~rrwfvl~~~~l~y~~~~~~~-~---~~~~~l~~~~v  353 (407)
T 4h8s_A          317 TTTWERLYFFTQGGNLMCQPRGAVA-G---GLIQDLDNCSV  353 (407)
T ss_dssp             CEEEEEEEEEECSSCEECCCTTCSS-C---CCCBCSSCCEE
T ss_pred             CCCceEEEEEEECCEEEEEeCCCCC-C---CeEEECCceEE
Confidence            4679999999999999999876443 2   47888988754

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=98.16  E-value=1e-05  Score=65.07  Aligned_cols=82  Identities=21%  Similarity=0.272  Sum_probs=58.5

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR  140 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~  140 (160)
                      .++.|||.|=.+.|.|.+....... ...+.|+|.++..........++.|.|.+++ +.|.|.|.|++|+..|+++|++
T Consensus       257 ~~~~r~~fLF~d~Ll~~k~~~~~~y-~~k~~i~L~~l~v~~~~~~~~~~~f~i~~~~-~~~~l~a~s~~ek~~W~~~i~~  334 (434)
T 3mpx_A          257 NRRPRHLFLMNDVLLYTYPQKDGKY-RLKNTLAVANMKVSRPVMEKVPYALKIETSE-SCLMLSASSCAERDEWYGCLSR  334 (434)
T ss_dssp             EEEEEEEEEESSEEEEEEECTTSCE-EEEEEEEC-----CCCCCTTSCSEEEEECSS-CEEEEECSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEEECCEEEEEEecCCCeE-EEEEEEEcCCcEEEecCCCCCCeeEEEecCC-eEEEEecCCHHHHHHHHHHHHH
Confidence            4678999999999999885443221 2368899999884333333568999999875 7999999999999999999999


Q ss_pred             Hhcc
Q psy8929         141 TAAM  144 (160)
Q Consensus       141 ~~~~  144 (160)
                      ++..
T Consensus       335 ai~e  338 (434)
T 3mpx_A          335 ALPE  338 (434)
T ss_dssp             C---
T ss_pred             HHHH
Confidence            9863

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=98.15  E-value=5.7e-06  Score=57.33  Aligned_cols=62  Identities=21%  Similarity=0.265  Sum_probs=48.0

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCC
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPK   81 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~   81 (160)
                      +..||+|||+|++.-..||-++.....   .|.|+++....+...           + .+.|+|.+++.-||+.+..
T Consensus        63 Gl~~kkR~liLT~~PrL~Yvdp~~~~~---KGeIpls~~l~ve~k-----------~-~~~F~I~Tp~RtY~~~d~~  124 (151)
T 1w1g_A           63 GLFARRRQLLLTEGPHLYYVDPVNKVL---KGEIPWSQELRPEAK-----------N-FKTFFVHTPNRTYYLMDPS  124 (151)
T ss_dssp             TTEEEEEEEEEETTTEEEEEETTTTEE---EEEECCCTTCEEEES-----------S-SSEEEEEETTEEEEEECTT
T ss_pred             cCcceeEEEEEcCCceEEEEcCccccc---cceEecCCCeeEEEc-----------C-CCEEEEECCCceEEEEcCc
Confidence            566999999999999999999986655   899999975442211           1 1278888999888888873

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=98.11  E-value=7.3e-06  Score=61.85  Aligned_cols=42  Identities=19%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      ..+.||||||||+++.|+||+......+..+...++|+.+..
T Consensus       144 ~~K~WkkRyfvLr~sgLy~~~k~~sk~~r~l~~~~~L~~~~v  185 (256)
T 3hk0_A          144 GKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNI  185 (256)
T ss_dssp             TSSCEEEEEEEEETTEEEEESSTTCCCGGGEEEEECCTTEEE
T ss_pred             CCCcceEEEEEEeCCEEEEEecCCCCccccceEEEEcCCCEE
Confidence            368999999999999999998776444423323457887443

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=98.04  E-value=1.4e-06  Score=66.47  Aligned_cols=81  Identities=16%  Similarity=0.317  Sum_probs=50.5

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccC---Ccccceeecccceeecccccc-cceeeeeeeceEEEEEEeCCEEEEEeCC
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEES---GVLDGVVALNNVTSLSEVPVA-RNFGFQITTWTKHWFVLRGCSLLYYRDP   80 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~---~~l~g~i~l~~~~~~~~~~~~-kk~g~~~~~WkkrwfvL~~~~L~yyk~~   80 (160)
                      .++|+++||||++..|+||++......   ..+.+.|+|..+......... ++.-|.+        ...++.-++|..+
T Consensus        36 ~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~~kKk~vF~L--------~t~~g~~yLFQA~  107 (279)
T 3a8n_A           36 RRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCL--------SNSLGDAFLFQTT  107 (279)
T ss_dssp             CCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTTSSSSCSCCCE--------EETTTEEEECCCS
T ss_pred             CCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEeccccCCCCcEEEE--------EcCCCCEEEEeCC
Confidence            478999999999999999998864321   123578999887765333222 3333332        2236777777777


Q ss_pred             CCccCCccceeEE
Q psy8929          81 KAEESGVLDGVVA   93 (160)
Q Consensus        81 ~~~~~~~~~g~I~   93 (160)
                      ...+...|...|.
T Consensus       108 s~eEm~~WI~aI~  120 (279)
T 3a8n_A          108 SQTELENWITAIH  120 (279)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            7666555555443

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=97.95  E-value=7.1e-05  Score=58.59  Aligned_cols=84  Identities=19%  Similarity=0.236  Sum_probs=63.7

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCc--------cCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAE--------ESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGI  130 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~--------~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e  130 (160)
                      ..+.|+|.|=++.|.+.+.....        ..=...+.|+|..+. |...++  .-+++|.|...++..|.|+|.|++|
T Consensus       258 ~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~-v~~~~d~~~~~~~F~i~~~~~~~~~l~a~s~~e  336 (354)
T 1dbh_A          258 AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQ-INDKDDTNEYKHAFEIILKDENSVIFSAKSAEE  336 (354)
T ss_dssp             CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCE-EEECCCSSSCCSEEEECCTTSCCEEEECSSHHH
T ss_pred             cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceE-EEeCCcccccCccEEEecCCCCEEEEEeCCHHH
Confidence            56789999989899888864310        000235889999988 444433  3478999998755799999999999


Q ss_pred             HHHHHHHHHHHhccc
Q psy8929         131 RNNWMSAIKRTAAMS  145 (160)
Q Consensus       131 ~~~Wi~al~~~~~~~  145 (160)
                      +..|+++|+.+...+
T Consensus       337 k~~W~~~i~~~~~~~  351 (354)
T 1dbh_A          337 KNNWMAALISLQYRS  351 (354)
T ss_dssp             HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999987543

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=97.91  E-value=6.8e-06  Score=62.80  Aligned_cols=40  Identities=33%  Similarity=0.574  Sum_probs=25.9

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      .+.|+||||||+++.|+||.......+..+.+.++|+++.
T Consensus       171 ~k~WkkRyfvLr~sgLyy~~K~~sk~~r~l~~l~~L~~~~  210 (281)
T 4gmv_A          171 KKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVN  210 (281)
T ss_dssp             SSCEEEEEEEECSSCEEEC---------CCEEEECGGGCE
T ss_pred             CCCCeEEEEEEeCCEEEEEeCCCCCccccceEEEEcCCcE
Confidence            5799999999999999999876554444445677888743

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.75  E-value=5e-05  Score=50.92  Aligned_cols=70  Identities=17%  Similarity=0.221  Sum_probs=45.2

Q ss_pred             CceEEEEEEeC------CeEEEeeCCCcccC-CcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeC
Q psy8929           7 TWTKHWFVLRG------CSLLYYRDPKAEES-GVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRD   79 (160)
Q Consensus         7 ~Wkkrwfvl~~------~~L~yy~~~~~~~~-~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~   79 (160)
                      .||||||||..      ..|.||.++..... .....+|.|+.|..|.+......  ..  .-.-.|++-+...++++--
T Consensus        29 KWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~--~p--k~~~aF~l~T~er~~~laA  104 (127)
T 2d9w_A           29 KWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEAS--SP--RDTSAFFLETKERLYLLAA  104 (127)
T ss_dssp             BCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSS--SC--SSCEEEEEEESSCEEEEEE
T ss_pred             hhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccC--CC--CcceEEEEEeCCcEEEEEe
Confidence            59999999975      67999998765432 12358999999999887655410  00  0113455666655555444


Q ss_pred             C
Q psy8929          80 P   80 (160)
Q Consensus        80 ~   80 (160)
                      +
T Consensus       105 e  105 (127)
T 2d9w_A          105 P  105 (127)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=97.73  E-value=0.00025  Score=54.52  Aligned_cols=81  Identities=12%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             ceEEEEEEeCCEEEEEeCCCCcc---CCccceeEEcCCceeeeecCCCCCceEEEEeC----CCcEEEEEcCCHHHHHHH
Q psy8929          62 WTKHWFVLRGCSLLYYRDPKAEE---SGVLDGVVALNNVTSLSEVPVARNFGFQITTW----DSKRTILSAVTAGIRNNW  134 (160)
Q Consensus        62 WkkrwfvL~~~~L~yyk~~~~~~---~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~----~~r~~~l~a~s~~e~~~W  134 (160)
                      .+.|++.|=.+.|.+.+......   .=...+.|+|.++. |.....+.++.|.|...    ....|.|+|.|++|++.|
T Consensus       221 ~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~-v~e~~~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W  299 (311)
T 1nty_A          221 GRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELG-VTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDW  299 (311)
T ss_dssp             EEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEE-EECCCTTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHH
T ss_pred             cceeEEEeccCeEEEEEeeccCCCCceeEEeeeeecccee-eEEccCCCCceEEEEeCCCCCCCceEEEECCCHHHHHHH
Confidence            46889999888888876533211   00225788898887 44444456789999872    236899999999999999


Q ss_pred             HHHHHHHhc
Q psy8929         135 MSAIKRTAA  143 (160)
Q Consensus       135 i~al~~~~~  143 (160)
                      +.+|+.++.
T Consensus       300 ~~~i~~~i~  308 (311)
T 1nty_A          300 IKHIREVIQ  308 (311)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999986

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=97.65  E-value=0.00033  Score=55.83  Aligned_cols=81  Identities=15%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC------CCCceEEEEeC-CCcEEEEEcCCHHHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV------ARNFGFQITTW-DSKRTILSAVTAGIRNN  133 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~------~~~~~F~i~t~-~~r~~~l~a~s~~e~~~  133 (160)
                      ..+.|++.|=++.|.+.+.....-  ...+.|+|..+. |...+.      .-++.|.|... +.+.|.|.|.|++|++.
T Consensus       249 ~~~~~~~fLF~d~Ll~~k~k~~~y--~~k~~i~l~~~~-v~~~~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~  325 (406)
T 2vrw_B          249 SKTDRYAFLLDKALLICKRRGDSY--DLKASVNLHSFQ-VRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKK  325 (406)
T ss_dssp             SCEEEEEEEESSEEEEEEEETTEE--EEEEEEETTTEE-EEC--------CTTCEEEEEEETTCSCEEEEEESSHHHHHH
T ss_pred             ccceEEEEecCCEEEEEEecCCce--EEEEEeccccee-eeecCCCCccCCccceeeEEEecCCCceEEEeCCCHHHHHH
Confidence            467899999898888877643221  235789999887 443322      13589999974 34799999999999999


Q ss_pred             HHHHHHHHhcc
Q psy8929         134 WMSAIKRTAAM  144 (160)
Q Consensus       134 Wi~al~~~~~~  144 (160)
                      |+++|+.++..
T Consensus       326 W~~~i~~ai~~  336 (406)
T 2vrw_B          326 WMEQFEMAISN  336 (406)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999874

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=97.61  E-value=0.00047  Score=55.94  Aligned_cols=83  Identities=12%  Similarity=0.259  Sum_probs=61.2

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCc-cCCccceeEEcCCceeeeecCC--------CCCceEEEEeCC-CcEEEEEcCCHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAE-ESGVLDGVVALNNVTSLSEVPV--------ARNFGFQITTWD-SKRTILSAVTAGI  130 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~-~~~~~~g~I~L~~~~~v~~~~~--------~~~~~F~i~t~~-~r~~~l~a~s~~e  130 (160)
                      ..+.|+|.|=.+.|.+.+..... ..-...+.|+|.++. |....+        .-+++|.|.... ...|.|+|.|++|
T Consensus       349 ~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~-v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~e  427 (466)
T 2pz1_A          349 KSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLE-VVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQ  427 (466)
T ss_dssp             CEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCE-EEECCSBSCCSSCCCBCEEEEEECSSSCCEEEEEESSHHH
T ss_pred             CeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceE-EEeCCCCcccccccccceeEEEEeCCCCeEEEEEeCCHHH
Confidence            35679999999999988854321 111235889999987 443332        135899999753 3699999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy8929         131 RNNWMSAIKRTAAM  144 (160)
Q Consensus       131 ~~~Wi~al~~~~~~  144 (160)
                      +..|+++|+.++..
T Consensus       428 K~~W~~~i~~a~~~  441 (466)
T 2pz1_A          428 KQRWLKAFAREREQ  441 (466)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998874

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=97.61  E-value=0.00012  Score=50.70  Aligned_cols=20  Identities=35%  Similarity=0.873  Sum_probs=19.0

Q ss_pred             CCCceEEEEEEeCCeEEEee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYR   24 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~   24 (160)
                      .+.|++|||||++..|+|++
T Consensus        14 ~~~w~~~~fvL~~~~L~y~~   33 (150)
T 2fjl_A           14 NHEWYPHYFVLTSSKIYYSE   33 (150)
T ss_dssp             TTEEEEEEEEEETTEEEECC
T ss_pred             CCCceEeEEEEECCEEEEEe
Confidence            68899999999999999998

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=97.58  E-value=0.00057  Score=54.51  Aligned_cols=82  Identities=9%  Similarity=0.182  Sum_probs=60.4

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCc-cCCccceeEEcCCceeeeecCCC--------CCceEEEEeCC-CcEEEEEcCCHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAE-ESGVLDGVVALNNVTSLSEVPVA--------RNFGFQITTWD-SKRTILSAVTAGI  130 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~-~~~~~~g~I~L~~~~~v~~~~~~--------~~~~F~i~t~~-~r~~~l~a~s~~e  130 (160)
                      ..+.|+|.|=++.|.+.+..... ..=...+.|+|.++. |...+++        -+++|.|...+ ...|.|+|.|++|
T Consensus       272 k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~-v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~e  350 (402)
T 2dfk_A          272 RNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYE-VIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEE  350 (402)
T ss_dssp             CCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEE-EEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHH
T ss_pred             ceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceE-EEecCCCCccccccccceeEEEEECCCCeEEEEEeCCHHH
Confidence            45679999999999888854321 111235789999887 4443321        25799999753 3699999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8929         131 RNNWMSAIKRTAA  143 (160)
Q Consensus       131 ~~~Wi~al~~~~~  143 (160)
                      +..|+++|+.++.
T Consensus       351 K~~Wi~~i~~a~~  363 (402)
T 2dfk_A          351 KIRWLRAFREERK  363 (402)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999776

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=97.57  E-value=0.00071  Score=54.03  Aligned_cols=85  Identities=18%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCcc---------------CCccceeEEcCCceeeeecCCCCCceEEEEeCC----CcEE
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEE---------------SGVLDGVVALNNVTSLSEVPVARNFGFQITTWD----SKRT  121 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~---------------~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~----~r~~  121 (160)
                      .++.|++.|=.+.|.+.+...+..               .-...+.|.|.++. |..+. ..+..|.|....    .+.|
T Consensus       309 ~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~-v~~~~-~~~~~f~l~~~~~~~~~~~~  386 (418)
T 3t06_A          309 KTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVL-IRSVA-TDKRAFFIICTSKLGPPQIY  386 (418)
T ss_dssp             BCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEE-EEECS-SCSSEEEEEECCSSSTTCEE
T ss_pred             CeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhce-ecccc-ccCceEEEEecCCCCCceEE
Confidence            467899999999998887543210               00113678888877 45443 356788888632    2699


Q ss_pred             EEEcCCHHHHHHHHHHHHHHhcccCC
Q psy8929         122 ILSAVTAGIRNNWMSAIKRTAAMSLL  147 (160)
Q Consensus       122 ~l~a~s~~e~~~Wi~al~~~~~~~~~  147 (160)
                      .|.|.|.+|++.||++|++++.....
T Consensus       387 ~l~A~s~~ek~~W~~~I~~a~~~~~~  412 (418)
T 3t06_A          387 ELVALTSSDKNTWMELLEEAVRNAHH  412 (418)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHTC--
T ss_pred             EEEcCCHHHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999999985443

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=97.57  E-value=0.00081  Score=52.75  Aligned_cols=81  Identities=19%  Similarity=0.239  Sum_probs=58.7

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCc--------------c-CCccceeEEcCCceeeeecCCCCCceEEEEeCC----CcEE
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAE--------------E-SGVLDGVVALNNVTSLSEVPVARNFGFQITTWD----SKRT  121 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~--------------~-~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~----~r~~  121 (160)
                      .++.|++.|=.+.|.+.+...+.              . .-...+.|+|.++. |.... +.+++|.|++..    ...|
T Consensus       267 ~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-v~~~~-~~~~~f~i~~~~~~g~~~~~  344 (368)
T 1xcg_A          267 KTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVL-IRSVA-TDKRAFFIICTSKLGPPQIY  344 (368)
T ss_dssp             CCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEE-EEECS-SCSSEEEEEECCSSSTTCEE
T ss_pred             CeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEcccee-eeccc-CCCceEEEEEecCCCCceEE
Confidence            46789999999888887754321              0 00114678888876 45432 346788888642    2699


Q ss_pred             EEEcCCHHHHHHHHHHHHHHhc
Q psy8929         122 ILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       122 ~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      .|+|.|++|++.|+++|++++.
T Consensus       345 ~l~a~s~~ek~~W~~~i~~ai~  366 (368)
T 1xcg_A          345 ELVALTSSDKNTWMELLEEAVR  366 (368)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999885

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=97.56  E-value=0.00056  Score=53.62  Aligned_cols=81  Identities=17%  Similarity=0.246  Sum_probs=59.9

Q ss_pred             ceEEEEEEeCCEEEEEeCCCCcc-------CCccceeEEcCCceeeeecCCCCCceEEEEeCC-CcEEEEEcCCHHHHHH
Q psy8929          62 WTKHWFVLRGCSLLYYRDPKAEE-------SGVLDGVVALNNVTSLSEVPVARNFGFQITTWD-SKRTILSAVTAGIRNN  133 (160)
Q Consensus        62 WkkrwfvL~~~~L~yyk~~~~~~-------~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~-~r~~~l~a~s~~e~~~  133 (160)
                      .+.|++.|=.+.|.+.+......       .=...+.|+|..+. |.....+.++.|.|...+ ...|.|+|.|+++++.
T Consensus       237 ~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~-v~e~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~  315 (353)
T 1kz7_A          237 PMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVG-ITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAA  315 (353)
T ss_dssp             CEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEE-EECCBTTBTTEEEEEETTTTEEEEEECSSHHHHHH
T ss_pred             cceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccce-eeEcCCCCCceEEEEECCCCcEEEEECCCHHHHHH
Confidence            57899999998888887543211       00225778888876 443333467899998743 3689999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      |+++|++++.
T Consensus       316 W~~~i~~ai~  325 (353)
T 1kz7_A          316 WVNAIRKVLT  325 (353)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=97.53  E-value=0.00045  Score=54.16  Aligned_cols=82  Identities=12%  Similarity=0.178  Sum_probs=59.6

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCc------cCCccceeEEcCCceeeeecCCCCCceEEEEeCC----CcEEEEEcCCHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAE------ESGVLDGVVALNNVTSLSEVPVARNFGFQITTWD----SKRTILSAVTAGI  130 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~------~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~----~r~~~l~a~s~~e  130 (160)
                      ..+.|++.|=.+.|.+.+.....      ..=...+.|+|..+. |.....+.++.|.|...+    ...|.|+|.|++|
T Consensus       227 ~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~-v~~~~~~~~~~F~i~~~~~~~~~~~~~l~a~s~~e  305 (354)
T 2rgn_B          227 RGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLG-LEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPAI  305 (354)
T ss_dssp             CCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEE-EEESGGGCTTEEEEEEECSSSCEEEEEEEESSHHH
T ss_pred             CCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeecccee-eeeccCCCCceEEEEecCCCCCceEEEEECCCHHH
Confidence            46789999999888887754321      001225778888877 444333467899998631    2699999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy8929         131 RNNWMSAIKRTAA  143 (160)
Q Consensus       131 ~~~Wi~al~~~~~  143 (160)
                      ++.|+++|++++.
T Consensus       306 k~~W~~~i~~ai~  318 (354)
T 2rgn_B          306 SQAWIKHVAQILE  318 (354)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999876

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=97.53  E-value=0.00031  Score=50.41  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=54.6

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCcc----CCccceeEEcCCceeeeecCCCCCceEEEEeC---CCcEEEEEcCCHHHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEE----SGVLDGVVALNNVTSLSEVPVARNFGFQITTW---DSKRTILSAVTAGIRNN  133 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~----~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~---~~r~~~l~a~s~~e~~~  133 (160)
                      .++.+|++|=...|.|..-..+.-    .......|.|..+. |..... .+.+|-++..   +.+.|.|.|.|.+|++.
T Consensus        85 ~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~-vre~a~-d~~~~fli~~~~~g~~~yel~a~s~~er~~  162 (185)
T 2lg1_A           85 RLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLI-VREVAH-EEKGLFLISMGMTDPEMVEVHASSKEERNS  162 (185)
T ss_dssp             CEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCE-EECCSS-CSSEEEEECCSSSCCCCEEEECSSHHHHHH
T ss_pred             CeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceE-EeccCC-CCCeEEEEEecCCCCeEEEEEcCCHHHHHH
Confidence            567899988877776554222110    00012568888887 444433 3346666642   23699999999999999


Q ss_pred             HHHHHHHHhcc
Q psy8929         134 WMSAIKRTAAM  144 (160)
Q Consensus       134 Wi~al~~~~~~  144 (160)
                      ||.+|+.|+..
T Consensus       163 W~~~I~~Ai~~  173 (185)
T 2lg1_A          163 WIQIIQDTINT  173 (185)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999883

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=97.48  E-value=0.00059  Score=53.17  Aligned_cols=79  Identities=16%  Similarity=0.207  Sum_probs=57.0

Q ss_pred             eEEEEEEeCCEEEEEeCCCCcc---CCccceeEEcCCceeeeecCCC-----------------CCceEEEEeC---CCc
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEE---SGVLDGVVALNNVTSLSEVPVA-----------------RNFGFQITTW---DSK  119 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~---~~~~~g~I~L~~~~~v~~~~~~-----------------~~~~F~i~t~---~~r  119 (160)
                      +.|++.|=.+.|.+.+......   .....+.|+|..+. |...+++                 .+++|.|...   .+.
T Consensus       244 ~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~-v~~~~d~~~~~~~s~~g~~~~~~~~~~~F~i~~~~~~~~~  322 (346)
T 2z0q_A          244 VKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLT-LEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNGSQSQ  322 (346)
T ss_dssp             CEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCE-EEECCTTTSCCCSCC--CCSHHHHTSSEEEEEECCGGGCE
T ss_pred             cEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhce-eeecCCCccccCccccccccCCcccccceEEEEecCCCCc
Confidence            6788989888888877432110   00124678898887 4544321                 3689999863   236


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHh
Q psy8929         120 RTILSAVTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       120 ~~~l~a~s~~e~~~Wi~al~~~~  142 (160)
                      .|.|+|.|++|+..|+++|++|+
T Consensus       323 ~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          323 THSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHhh
Confidence            99999999999999999999986

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.45  E-value=0.00026  Score=47.34  Aligned_cols=72  Identities=11%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             CCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCC
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDP   80 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~   80 (160)
                      ++.+.|||||++|...++.||.++.+.+.   ...|+|+++..+.......--.   ..-....|.+.-..+.||-.+
T Consensus        19 ~~d~~rKRHYWrLD~K~Itlf~~e~~~~~---ykeIpL~eIl~v~~~~~~~~l~---~~~~~hcFEi~T~~~~yyVg~   90 (125)
T 2coa_A           19 NKDTLRKRHYWRLDCKCITLFQNNTTNRY---YKEIPLSEILTVESAQNFSLVP---PGTNPHCFEIVTANATYFVGE   90 (125)
T ss_dssp             SSSCCCEEEEEEECSSEEEEESSSSCSSC---SEEEETTTCCEEEESCCCSSSC---TTSCCEEEEEECSSCCCCEEC
T ss_pred             cCCccccceeeEecCCeEEEEecCCCCce---eeeeehhHeecccccccccccC---CCCCCceEEEEeCCeEEEEcc
Confidence            56789999999999999999999877666   6889999988877664332100   001123465555666666543

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=97.41  E-value=0.0022  Score=54.63  Aligned_cols=83  Identities=13%  Similarity=0.271  Sum_probs=62.4

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHH
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWM  135 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi  135 (160)
                      |.....|++|++.|.++.|.......  .+   ...+.+..+..|........++|.+.+.++++|++.+++..++.+|+
T Consensus       570 g~f~~~~~rR~~~l~p~r~e~~~e~~--~~---~~l~~~~~v~~v~k~~i~~~~~l~~~~k~~k~f~~~t~~~~~~~~W~  644 (689)
T 3v5w_A          570 NPFLTQWQRRYFYLFPNRLEWRGEGE--AP---QSLLTMEEIQSVEETQIKERKCLLLKIRGGKQFILQCDSDPELVQWK  644 (689)
T ss_dssp             ------CEEEEEEEETTEEEEECTTS--CC---CEEEEGGGEEEEEEEESSSCEEEEEEETTTEEEEEECSSHHHHHHHH
T ss_pred             CcccchhhhhccccCCCcccccccCC--CC---cceeeeccccccccCcCCCCcceeeeecCCcEEEEECCChHHHHHHH
Confidence            44457899999999999998775432  22   35677888776666555677899999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy8929         136 SAIKRTAA  143 (160)
Q Consensus       136 ~al~~~~~  143 (160)
                      .+|+.+-.
T Consensus       645 ~~i~~~~~  652 (689)
T 3v5w_A          645 KELRDAYR  652 (689)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987553

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=97.41  E-value=0.00068  Score=56.67  Aligned_cols=83  Identities=13%  Similarity=0.134  Sum_probs=61.4

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC------CCCceEEEEeCCC-cEEEEEcCCHHHHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV------ARNFGFQITTWDS-KRTILSAVTAGIRN  132 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~------~~~~~F~i~t~~~-r~~~l~a~s~~e~~  132 (160)
                      +..+.|++.|=.+.|.+.+.....-  ...+.|+|..+. |.....      .-+++|.|....+ +.|.|.|.|++|++
T Consensus       420 ~~~~~r~~fLF~d~Ll~~k~~~~~y--~~k~~i~L~~~~-v~~~~~~~~~~~~~~~~f~i~~~~~~~~~~L~A~S~eeK~  496 (587)
T 3ky9_A          420 RSKMDRYAFLLDKALLICKRRGDSY--DLKDFVNLHSFQ-VRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKK  496 (587)
T ss_dssp             CSCEEEEEEEETTEEEEEEEETTEE--EEEEEEEGGGEE-EEEC-----CCCTTCEEEEEEETTC---CEEEESSHHHHH
T ss_pred             CCcceEEEEEECCEEEEEEecCCEE--Eeeeeechhhce-eeecCCCCcccccccceeEEEEcCCCceEEEEeCCHHHHH
Confidence            4567899999999998887653321  236889999988 444322      2458999998643 69999999999999


Q ss_pred             HHHHHHHHHhccc
Q psy8929         133 NWMSAIKRTAAMS  145 (160)
Q Consensus       133 ~Wi~al~~~~~~~  145 (160)
                      .|+++|+.++...
T Consensus       497 ~Wi~~I~~ai~~~  509 (587)
T 3ky9_A          497 KWMEQFEMAISNI  509 (587)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999999743

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=97.36  E-value=0.0012  Score=52.20  Aligned_cols=83  Identities=19%  Similarity=0.175  Sum_probs=57.0

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCcc---------------CCccceeEEcCCceeeeecCCCCCceEEEEeC--CCcEEEE
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEE---------------SGVLDGVVALNNVTSLSEVPVARNFGFQITTW--DSKRTIL  123 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~---------------~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~--~~r~~~l  123 (160)
                      ..+.|++.|=.+.|.+.+...+..               .....+.|.|.++. |.......+..|.|...  +.+.|.|
T Consensus       271 ~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-v~~~~~d~~~~f~i~~~~~~~~~~~l  349 (385)
T 1txd_A          271 KTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVL-VRQVATDNKALFVISMSDNGAQIYEL  349 (385)
T ss_dssp             CBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEE-EEECCC-CCEEEEEEECSSCEEEEEE
T ss_pred             CeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceeccccc-ccccccCCceEEEEEEcCCCceEEEE
Confidence            467789988888888776432210               00124778888876 45443333455666542  2369999


Q ss_pred             EcCCHHHHHHHHHHHHHHhcc
Q psy8929         124 SAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       124 ~a~s~~e~~~Wi~al~~~~~~  144 (160)
                      +|.|++|++.|+++|++++..
T Consensus       350 ~a~s~~ek~~W~~~i~~~i~~  370 (385)
T 1txd_A          350 VAQTVSEKTVWQDLICRMAAS  370 (385)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999873

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=97.34  E-value=0.0021  Score=50.48  Aligned_cols=83  Identities=23%  Similarity=0.280  Sum_probs=56.3

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCc----cC-----------CccceeEEcCCceeeeecCCCCCceEEEEeC--CCcEEEE
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAE----ES-----------GVLDGVVALNNVTSLSEVPVARNFGFQITTW--DSKRTIL  123 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~----~~-----------~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~--~~r~~~l  123 (160)
                      .++.|+|.|=.+.|.+.+.....    ..           ......|.|.... +.++.......|.|.+.  ....|.|
T Consensus       273 ~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~-v~e~~~~~~~~~~i~~~~~~~~~~~l  351 (377)
T 3p6a_A          273 KAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAM-TREVATDHKAFYVLFTWDQEAQIYEL  351 (377)
T ss_dssp             CEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEE-EEECTTCTTEEEEEETTCTTCCEEEE
T ss_pred             CeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhh-ccccccccceeEEEecCCCCCeeEEE
Confidence            56789999999888887744321    00           0012368888876 55544433334444431  3468999


Q ss_pred             EcCCHHHHHHHHHHHHHHhcc
Q psy8929         124 SAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       124 ~a~s~~e~~~Wi~al~~~~~~  144 (160)
                      .|.|.+|++.||++|++++..
T Consensus       352 ~A~s~~ek~~W~~~I~~ai~~  372 (377)
T 3p6a_A          352 VAQTVSERKNWCALITETAGS  372 (377)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHT
T ss_pred             ecCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999873

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.33  E-value=0.0016  Score=56.06  Aligned_cols=83  Identities=19%  Similarity=0.369  Sum_probs=60.3

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCC-------cEEEEEcCCH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDS-------KRTILSAVTA  128 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~-------r~~~l~a~s~  128 (160)
                      .++-+..||||+..+|.+|+++.+.+.   .-.++|.+.. +.....   ++++.|.|..+++       +.+-|+|+|.
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  630 (772)
T 3zvr_A          555 KGGSKEYWFVLTAENLSWYKDDEEKEK---KYMLSVDNLK-LRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQ  630 (772)
T ss_dssp             ---CCEEEEEEESSEEEEESSTTCCCE---EEEEECTTEE-EEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSH
T ss_pred             cCCCccceeeccccccccccchhhhcc---cccccccccc-cchhhhccccccccccccCCccccccchhhhhhhhcccc
Confidence            356678999999999999999877665   5678887666 443332   5789999986654       4778999999


Q ss_pred             HHHHHHHHHHHHHhccc
Q psy8929         129 GIRNNWMSAIKRTAAMS  145 (160)
Q Consensus       129 ~e~~~Wi~al~~~~~~~  145 (160)
                      ++.+.|...+-.|=-.|
T Consensus       631 ~~~~~~~~~~~~~~~~~  647 (772)
T 3zvr_A          631 EEVDSWKASFLRAGVYP  647 (772)
T ss_dssp             HHHHHHHHHHHHTTCCB
T ss_pred             ccchhhHHhhhhcccCC
Confidence            99999999985543343

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=97.26  E-value=0.002  Score=53.40  Aligned_cols=84  Identities=21%  Similarity=0.190  Sum_probs=57.5

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCcc---------------CCccceeEEcCCceeeeecCCCCCceEEEEeC---CCcEEE
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEE---------------SGVLDGVVALNNVTSLSEVPVARNFGFQITTW---DSKRTI  122 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~---------------~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~---~~r~~~  122 (160)
                      .++.|+|.|=.+.|.+.+...+.-               .......|.|..+. |..+.. ....|.++..   ....|.
T Consensus       426 k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~-v~e~~~-d~~~ffli~~~~~~~~~~~  503 (536)
T 3odw_A          426 KAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAM-TREVAT-DHKAFYVLFTWDQEAQIYE  503 (536)
T ss_dssp             --CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEE-EEECTT-CTTEEEEEEC---CCCEEE
T ss_pred             CeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccce-eecccc-cCCceEEEecCCCCceEEE
Confidence            567899999998888877433210               00012468888886 555543 3456666543   347999


Q ss_pred             EEcCCHHHHHHHHHHHHHHhcccC
Q psy8929         123 LSAVTAGIRNNWMSAIKRTAAMSL  146 (160)
Q Consensus       123 l~a~s~~e~~~Wi~al~~~~~~~~  146 (160)
                      |+|.|.+|++.||++|+++|....
T Consensus       504 L~A~S~eEK~~W~~~I~~aI~~~~  527 (536)
T 3odw_A          504 LVAQTVSERKNWCALITETAGSLK  527 (536)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHTSC
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999998443

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=97.24  E-value=0.0015  Score=49.41  Aligned_cols=54  Identities=17%  Similarity=0.156  Sum_probs=43.1

Q ss_pred             eeEEcCCceeeeec--CCCCCceEEEEeCCCc-EEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929          90 GVVALNNVTSLSEV--PVARNFGFQITTWDSK-RTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus        90 g~I~L~~~~~v~~~--~~~~~~~F~i~t~~~r-~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      +.|+|..+......  ++.++++|+|..++++ +..|+|++.+++.+|+.+|..+|.
T Consensus       206 ~~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          206 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             EEEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence            56777777742222  2258899999999875 689999999999999999999874

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=97.19  E-value=5.4e-05  Score=61.90  Aligned_cols=83  Identities=20%  Similarity=0.144  Sum_probs=0.0

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCc--cCC--------------ccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEE
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAE--ESG--------------VLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRT  121 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~--~~~--------------~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~  121 (160)
                      +..+.|+|.|=.+.|.+.+.....  ..+              ..++.|+|.++. |....+  ..+++|.|..++ ++|
T Consensus       263 ~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~-v~~~~d~~~~~~~F~i~~~~-~~~  340 (510)
T 3jzy_A          263 KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVL-VKLPTDPSSDEPVFHISHID-RVY  340 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheE-EeccCCCCccccceeeeccc-eeE
Confidence            456789999988888887733321  000              013567777776 444422  467899999875 799


Q ss_pred             EEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         122 ILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       122 ~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                      .|+|.|++|+..|+++|+.++..
T Consensus       341 ~l~a~s~~ek~~W~~~i~~ai~~  363 (510)
T 3jzy_A          341 TLRTDNINERTAWVQKIKAASEQ  363 (510)
T ss_dssp             -----------------------
T ss_pred             EeccCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998874

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.10  E-value=0.0023  Score=45.42  Aligned_cols=54  Identities=17%  Similarity=0.156  Sum_probs=45.0

Q ss_pred             eeEEcCCceeeeec--CCCCCceEEEEeCCCc-EEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929          90 GVVALNNVTSLSEV--PVARNFGFQITTWDSK-RTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus        90 g~I~L~~~~~v~~~--~~~~~~~F~i~t~~~r-~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      ..|+|.-|......  ++.+++.|+|..++++ +..|.|.+..+...|+.+|...|.
T Consensus       121 ~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~  177 (178)
T 2adz_A          121 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  177 (178)
T ss_dssp             EEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             eeecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence            67999998854433  2357899999999885 889999999999999999998874

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.06  E-value=0.0012  Score=44.33  Aligned_cols=70  Identities=14%  Similarity=0.284  Sum_probs=49.6

Q ss_pred             CCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccc--eeeeeeeceEEEEEEeCCEEEEEeCC
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARN--FGFQITTWTKHWFVLRGCSLLYYRDP   80 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk--~g~~~~~WkkrwfvL~~~~L~yyk~~   80 (160)
                      ++...|||||++|...+|.+|.++.+.+.   ...|+|+++..+.......-  .+..     ...|.+.-..+.||-.+
T Consensus        19 ~~d~~rKRHYWrLD~K~Itlf~~e~~~k~---ykeIpLseIL~v~~~~~~~~~~~~~~-----phcFEi~T~~~~y~Vge   90 (129)
T 2d9z_A           19 SRDNLRKRHYWRLDSKCLTLFQNESGSKY---YKEIPLSEILRISSPRDFTNISQGSN-----PHCFEIITDTMVYFVGE   90 (129)
T ss_dssp             SSCCCCEEEEEEEESSCEEEESCSSCCSC---CCEECTTTCCEECCTTCCCCSSSCSC-----CCSEEEECSSCEEEECB
T ss_pred             cCCccccceeeEecCCeEEEEecCCCCce---eceeeHHHhcccccccCccccCCCCC-----CceEEEEECCEEEEEcc
Confidence            56778999999999999999999877666   67899999888776543321  1111     12365655666677654

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=96.90  E-value=0.0041  Score=55.43  Aligned_cols=80  Identities=19%  Similarity=0.255  Sum_probs=61.4

Q ss_pred             eEEEEEEeCCEEEEEeCCCCcc--------CCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEE--------SGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~--------~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      +.|++.|=.+.|.+.+......        .=...+.|+|.++. |...++  .-+++|.|...++..|.|.|.|++|+.
T Consensus       457 ~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~-V~~~~d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~  535 (1049)
T 3ksy_A          457 HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQ-INDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKN  535 (1049)
T ss_dssp             SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCC-CCCCCCSSSCCSEEEECCTTSCCEEEECSSHHHHH
T ss_pred             ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceE-EEECCCCccccceEEEEcCCCCEEEEeCCCHHHHH
Confidence            6799999999999988653210        01236789999888 444433  357899999876679999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8929         133 NWMSAIKRTAA  143 (160)
Q Consensus       133 ~Wi~al~~~~~  143 (160)
                      .||++|+.+..
T Consensus       536 ~Wi~~I~~~q~  546 (1049)
T 3ksy_A          536 NWMAALISLQY  546 (1049)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=96.80  E-value=0.02  Score=44.95  Aligned_cols=80  Identities=10%  Similarity=0.167  Sum_probs=52.6

Q ss_pred             eEEEEEEeCCEEEE-EeCCCCc----------------cCCccceeEEcCCceeeeecCC--C-CCceEEEEeC------
Q psy8929          63 TKHWFVLRGCSLLY-YRDPKAE----------------ESGVLDGVVALNNVTSLSEVPV--A-RNFGFQITTW------  116 (160)
Q Consensus        63 kkrwfvL~~~~L~y-yk~~~~~----------------~~~~~~g~I~L~~~~~v~~~~~--~-~~~~F~i~t~------  116 (160)
                      +.|++.|=.+.|.+ .+.....                ..-...+.|+|.++. |...++  . ....|.|..-      
T Consensus       260 ~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~-v~~~~~~~~~~~~~f~i~~~~~~~~~  338 (377)
T 1foe_A          260 PELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQ-VRALPSADAEANAVCEIVHVKSESEG  338 (377)
T ss_dssp             CEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEE-EECCCCTTTTSCCEEEEEECCBTGGG
T ss_pred             ceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceE-EEecCCCccchhhHHHHHhccccccC
Confidence            56777777776554 5532110                011235789998887 444433  1 2345888621      


Q ss_pred             -CCcEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         117 -DSKRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       117 -~~r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                       ..+.|.|+|.|++|++.|+.+|.+++.
T Consensus       339 ~~~~~~~l~A~s~~eK~~W~~~i~~~i~  366 (377)
T 1foe_A          339 RPERVFHLCCSSPESRKDFLKSVHSILR  366 (377)
T ss_dssp             BCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEeCCHHHHHHHHHHHHHHhh
Confidence             136899999999999999999999886

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=95.55  E-value=0.035  Score=36.78  Aligned_cols=81  Identities=11%  Similarity=0.096  Sum_probs=56.5

Q ss_pred             ceEEEEEEeCCEEEEEeCCCCc--cCCccceeEEcCCceeeeecCCCCCceEEEEeCC-CcEEEE--EcCCHH-HHHHHH
Q psy8929          62 WTKHWFVLRGCSLLYYRDPKAE--ESGVLDGVVALNNVTSLSEVPVARNFGFQITTWD-SKRTIL--SAVTAG-IRNNWM  135 (160)
Q Consensus        62 WkkrwfvL~~~~L~yyk~~~~~--~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~-~r~~~l--~a~s~~-e~~~Wi  135 (160)
                      =+.|++-|=...|.+.|.....  ..=..+..|.|+.+..-+.+.++.+..|+|..++ ...|.+  .|.|.+ ..+.|+
T Consensus        25 ~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~~d~~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv  104 (119)
T 1fho_A           25 PKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWL  104 (119)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTTCCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHH
T ss_pred             cceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEecCCCCCCcEEEEccCCCCceEEEeeecCCcHHHHHHHH
Confidence            3568888999999888855210  0002257899998884333332567789997654 246667  899999 999999


Q ss_pred             HHHHHHh
Q psy8929         136 SAIKRTA  142 (160)
Q Consensus       136 ~al~~~~  142 (160)
                      +.|++.+
T Consensus       105 ~~I~~~~  111 (119)
T 1fho_A          105 RDIAEEQ  111 (119)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHH
Confidence            9999844

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=95.22  E-value=0.026  Score=41.31  Aligned_cols=45  Identities=27%  Similarity=0.645  Sum_probs=29.4

Q ss_pred             CCCCceEEEEEEeC------C-eEEEeeCCCcccCC-cccceeecccceeecc
Q psy8929           4 KKHTWTKHWFVLRG------C-SLLYYRDPKAEESG-VLDGVVALNNVTSLSE   48 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~------~-~L~yy~~~~~~~~~-~l~g~i~l~~~~~~~~   48 (160)
                      ..|.||+||+||+-      . .|.-|+|..+...+ .....|.|..+..+..
T Consensus        19 ~~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~   71 (224)
T 3ml4_A           19 DGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEP   71 (224)
T ss_dssp             ---CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEE
T ss_pred             cCCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccc
Confidence            46799999999984      2 67889888775442 2245677777665553

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=94.20  E-value=0.073  Score=35.82  Aligned_cols=43  Identities=21%  Similarity=0.424  Sum_probs=34.1

Q ss_pred             CCCCceEEEEEEeC------CeEEEeeCCCcccCCcccceeecccceeeccc
Q psy8929           4 KKHTWTKHWFVLRG------CSLLYYRDPKAEESGVLDGVVALNNVTSLSEV   49 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~------~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~   49 (160)
                      ....|+|+|+||+.      ..|.||..|+..++   ...|+++.|..+...
T Consensus        38 ~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKp---K~~i~cs~I~EVR~t   86 (136)
T 1v5m_A           38 GTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRP---KVSIPLSAIIEVRTT   86 (136)
T ss_dssp             CSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSC---SSCEETTTCCBCCCC
T ss_pred             cccchhheeeEEEEccCCCceEEEEecCCcccCC---ccccchhhhhhhhhc
Confidence            46789999999973      46899999988887   778888887665543

>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A

Probab=93.22  E-value=1.7  Score=31.34  Aligned_cols=78  Identities=12%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             EEEEEeC--CEEEEEeCCCCcc---C--CccceeEEcCCceeeeecCC-------C--------CCceEEEEeCCCcEEE
Q psy8929          65 HWFVLRG--CSLLYYRDPKAEE---S--GVLDGVVALNNVTSLSEVPV-------A--------RNFGFQITTWDSKRTI  122 (160)
Q Consensus        65 rwfvL~~--~~L~yyk~~~~~~---~--~~~~g~I~L~~~~~v~~~~~-------~--------~~~~F~i~t~~~r~~~  122 (160)
                      +||.|..  ..|.| .+-.+..   +  ......|+|..+..|.....       +        ....|.|+...+..+-
T Consensus        51 ~f~rLs~n~k~L~y-~d~~~~~~~~p~ld~l~~kI~ls~Is~V~sg~~~p~~~~~~~~k~~~~~~~laFSii~~~~~~L~  129 (203)
T 3a98_B           51 WYCRLSPNHKVLHY-GDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSNCQLN  129 (203)
T ss_dssp             EEEEECTTSSEEEE-EECCBCSSCBCCBCCSCCEEEGGGEEEEEEGGGSTTC--------CCTTGGGEEEEEETTTEEEE
T ss_pred             EEEEECCCCceEEE-ccccccccCCCChhhcccceeHhhhhHhhcCCCCccccccccccccCcccceEEEEecCCCceEE
Confidence            4777877  34544 4333311   0  11136799998887654211       0        1258999987667999


Q ss_pred             EEcCCHHHHHHHHHHHHHHhc
Q psy8929         123 LSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       123 l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      |.|.|+++...|++-|+-.++
T Consensus       130 fvA~s~~~~~~W~DGL~~Llg  150 (203)
T 3a98_B          130 FIAPDKHEYCIWTDGLNALLG  150 (203)
T ss_dssp             EECSSHHHHHHHHHHHHHHTT
T ss_pred             EecCCHHHHHHHHHHHHHHhc
Confidence            999999999999999988765

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=92.92  E-value=0.43  Score=41.38  Aligned_cols=76  Identities=4%  Similarity=-0.001  Sum_probs=53.4

Q ss_pred             eEEEEEEeC--CEEEEEeCCCCccCCccceeEEcCCceeeeecCC---------------------CCCceEEEEeCCCc
Q psy8929          63 TKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---------------------ARNFGFQITTWDSK  119 (160)
Q Consensus        63 kkrwfvL~~--~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---------------------~~~~~F~i~t~~~r  119 (160)
                      +.|+|.|..  ..|+|....  .+    .+.|+|..+..|.....                     ....+|.|+.....
T Consensus        34 k~~~frLd~d~~~l~W~~~~--k~----~~~l~I~~IkeIR~G~~s~~pk~~~~~e~~~~~~~~~~~e~~~fTIvyg~~~  107 (799)
T 2zkm_X           34 SPVILRVDPKGYYLYWTYQS--KE----MEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNSFLLKTLTVVSGPDM  107 (799)
T ss_dssp             EEEEEEECTTSCEEEEEETT--SC----EEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTCCGGGTEEEEEECSSS
T ss_pred             eEEEEEEcCCCCEEEEccCC--Cc----CceEeeeeeHHhhcCCCCCCCchHHHHHHhcccCcccccccceEEEEECCCc
Confidence            467888875  345555422  12    37899999887774311                     12358999975432


Q ss_pred             ----EEEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         120 ----RTILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       120 ----~~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                          .+.|.|+++++++.|+..|+..+..
T Consensus       108 ~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~  136 (799)
T 2zkm_X          108 VDLTFHNFVSYKENVGKAWAEDVLALVKH  136 (799)
T ss_dssp             SSCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred             cceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence                5899999999999999999987764

>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}

Probab=92.40  E-value=0.59  Score=31.41  Aligned_cols=65  Identities=14%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             eeEEcCCceeeeecCC--------CCCceEEEEeCCCc------EEEEEcCC----HHHHHHHHHHHHHHhcc-cCCCCC
Q psy8929          90 GVVALNNVTSLSEVPV--------ARNFGFQITTWDSK------RTILSAVT----AGIRNNWMSAIKRTAAM-SLLDDK  150 (160)
Q Consensus        90 g~I~L~~~~~v~~~~~--------~~~~~F~i~t~~~r------~~~l~a~s----~~e~~~Wi~al~~~~~~-~~~~~~  150 (160)
                      -.|.|..+..|....+        .+..+|.|......      .-...+++    ....-.||.|+++++.+ -..+++
T Consensus        56 ~eIels~I~~vqiL~eg~~~ggg~~rasGm~l~Yk~~g~~~~~ql~lt~~~d~~~~kk~s~aWlaAm~KA~KllyEsr~~  135 (141)
T 2rrf_A           56 YEIEIVHISTVQILTEGFPPGGGNARATGMFLQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMHKAAKLLYESRDQ  135 (141)
T ss_dssp             EEEETTTCCCEECCCCSSCSSSSSCCCSCCEEEECCTTSSSCEEEEEECCCSSSCCHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             CcEEeeeeeEEEEeccCCCCCCCcceeeEEEEEeeCCCccceeEEEEeeccccCcchhhhHHHHHHHHHHHHHHHHhccc
Confidence            4588888877665432        36778888754321      22344444    56788899999999983 333444


Q ss_pred             CCCC
Q psy8929         151 ASPS  154 (160)
Q Consensus       151 ~~~s  154 (160)
                      ..||
T Consensus       136 ~~~~  139 (141)
T 2rrf_A          136 SGPS  139 (141)
T ss_dssp             SSSS
T ss_pred             CCCC
Confidence            4343

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=91.28  E-value=1.1  Score=38.96  Aligned_cols=77  Identities=16%  Similarity=0.171  Sum_probs=52.3

Q ss_pred             eEEEEEEeCCE-EEEEeCCCCccCCccceeEEcCCceeeeecCCC----------------------CCceEEEEeCCC-
Q psy8929          63 TKHWFVLRGCS-LLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----------------------RNFGFQITTWDS-  118 (160)
Q Consensus        63 kkrwfvL~~~~-L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~----------------------~~~~F~i~t~~~-  118 (160)
                      +.|.|.|.... ..|++.+.. +.   ...|+|..+..|......                      ...+|.|+.... 
T Consensus        39 ~~~~f~lD~d~~~L~W~~~~k-~~---~~~l~I~~I~eVR~G~~t~~pk~~klr~~~~~~g~~~~~~e~r~fTIvyg~~~  114 (816)
T 3qr0_A           39 IEILLRVDPKGYFLYWKIEGK-ED---TQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSSNIPLQDKCVTICHGYNY  114 (816)
T ss_dssp             EEEEEEECTTSCEEEECCTTC-SS---CEEEEGGGEEEEEEGGGSCCCCSHHHHHHHHHSSCTTSCHHHHEEEEEECSSS
T ss_pred             eeEEEEEcCCCCEEEEeCCCC-Cc---CcEEEeeeeeeeecCCcCCCCccHHHHHHHHhcCCCcccccccEEEEEECCCc
Confidence            56889998733 333443222 11   157999988877654321                      235899997543 


Q ss_pred             ---cEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         119 ---KRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       119 ---r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                         +.+.|.|+++++++.|+..|+..+.
T Consensus       115 ~nL~~l~LvA~s~e~A~~W~~gL~~L~~  142 (816)
T 3qr0_A          115 IDLEWTHLVAENSSVAKKWSEEVFSYAY  142 (816)
T ss_dssp             SSCEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             ccceEEEEeeCCHHHHHHHHHHHHHHHH
Confidence               2458999999999999999998765

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=89.38  E-value=1.2  Score=39.12  Aligned_cols=76  Identities=11%  Similarity=0.091  Sum_probs=51.8

Q ss_pred             eEEEEEEeC-CEEEEEeCCCCccCCccceeEEcCCceeeeecCC---------------------CCCceEEEEeCCC--
Q psy8929          63 TKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---------------------ARNFGFQITTWDS--  118 (160)
Q Consensus        63 kkrwfvL~~-~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---------------------~~~~~F~i~t~~~--  118 (160)
                      +.+.|.|.. +...||.+++ .+    ...|+|..+..|.....                     ....+|.|+....  
T Consensus        38 k~~~frLD~d~~~L~W~~~~-ke----~~~l~Is~IkeIR~G~~a~~pKd~klr~~~~~~~~~~~~e~r~fTIvyg~d~~  112 (885)
T 3ohm_B           38 NLVTLRVDPNGFFLYWTGPN-ME----VDTLDISSIRDTRTGRYARLPKDPKIREVLGFGGPDARLEEKLMTVVSGPDPV  112 (885)
T ss_dssp             CEEEEEECTTSCEEEEECGG-GC----EEEEEGGGEEEEEETTTSCCCCSHHHHHCC---------CTTEEEEEECSSGG
T ss_pred             EEEEEEECCCCCEEEEeCCC-CC----CceEeeehhhhhhcCcCCCCCccHHHHHHhccCcccCcccccEEEEEECCCCc
Confidence            456778876 3333455432 12    25688888777654331                     1246899998643  


Q ss_pred             --cEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         119 --KRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       119 --r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                        ..+.|.|.++++++.|+..|+..+.
T Consensus       113 n~~~LdLVA~s~e~a~~W~~gL~~L~~  139 (885)
T 3ohm_B          113 NTVFLNFMAVQDDTAKVWSEELFKLAM  139 (885)
T ss_dssp             GCEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred             cceEEEEEeCChHHHHHHHHHHHHHHh
Confidence              2589999999999999999998766

>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A

Probab=86.03  E-value=5.5  Score=26.16  Aligned_cols=84  Identities=11%  Similarity=0.066  Sum_probs=57.8

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCcc--CCccceeEEcCCceeeeecCCCCCceEEEEeCC-----CcEEEEEcCCHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEE--SGVLDGVVALNNVTSLSEVPVARNFGFQITTWD-----SKRTILSAVTAGIR  131 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~--~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~-----~r~~~l~a~s~~e~  131 (160)
                      +.+-..|=++++|..+.+.-.+....  ...-.-++.++++..+... ...|..|.|+-..     .+.|.|-|.|++|+
T Consensus        24 ~~~~~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K~s-~k~P~~FKivV~k~~~~e~KrYdfEA~s~~ea  102 (121)
T 3ulb_A           24 FINKHERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVKKS-KRVPEHFKIFVRREGQDDIKRYYFEAVSGQEC  102 (121)
T ss_dssp             EEEEEEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEEEC-SSCTTEEEEEECCTTCSSCEEEEEEESSHHHH
T ss_pred             ccccccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEEec-ccCCCcEEEEEEccCCCCcceeEEEeCCHHHH
Confidence            45566788888998888776543310  0001466778777654443 3467789887422     37999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8929         132 NNWMSAIKRTAA  143 (160)
Q Consensus       132 ~~Wi~al~~~~~  143 (160)
                      .+=|..|+..+.
T Consensus       103 ~EIV~~ik~~~~  114 (121)
T 3ulb_A          103 TEIVTRLQNLLS  114 (121)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	1e-11
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	8e-06
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	4e-10
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	5e-05
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	4e-09
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	7e-09
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	2e-08
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	2e-04
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	5e-08
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	5e-04
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	7e-08
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	8e-08
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	3e-07
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	3e-07
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	3e-07
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	4e-04
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	4e-07
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	8e-04
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	4e-07
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	0.002
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	5e-07
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	0.002
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	1e-06
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	0.002
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	1e-06
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	3e-06
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	4e-06
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	5e-06
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	7e-06
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	9e-06
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	1e-05
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	2e-05
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	2e-05
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	4e-05
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	4e-05
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	8e-05
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	9e-05
d1w1ha_	147	b.55.1.1 (A:) 3-phosphoinositide dependent protein	1e-04
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	1e-04
d1xcga2	140	b.55.1.1 (A:942-1081) Rho guanine nucleotide excha	0.002
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	0.002
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	0.003

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.0 bits (139), Expect = 1e-11
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 53  RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEES-GVLDGVVALNNVTSLSEVPVARNFGF 111
           ++  F    W K W  L      YY   K ++  G          + +       ++  F
Sbjct: 115 KDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCF 174

Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKR 140
           +I   D +    +A +      W+  +K 
Sbjct: 175 EICAPDKRIYQFTAASPKDAEEWVQQLKF 203

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 5   KHTWTKHWFVLRGCSLLYYRDPKAEES-GVLDGVVALNNVTSLSEVPVARNFGFQITTWT 63
              W K W  L      YY   K ++  G          + +       ++  F+I    
Sbjct: 121 GFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPD 180

Query: 64  KHWFVLR 70
           K  +   
Sbjct: 181 KRIYQFT 187

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 4e-10
 Identities = 22/82 (26%), Positives = 33/82 (40%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKR 120
            W + WFVL G  L YY+D + E       + + N        P  R F F       + 
Sbjct: 25  LWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRT 84

Query: 121 TILSAVTAGIRNNWMSAIKRTA 142
            +L+A T      W+ A+ R +
Sbjct: 85  YVLAADTLEDLRGWLRALGRAS 106

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 5e-05
 Identities = 18/71 (25%), Positives = 26/71 (36%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
          +    W + WFVL G  L YY+D + E       + + N        P  R F F     
Sbjct: 21 SGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHP 80

Query: 63 TKHWFVLRGCS 73
              +VL   +
Sbjct: 81 GMRTYVLAADT 91

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.9 bits (118), Expect = 4e-09
 Identities = 11/88 (12%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVL------DGVVALNNVTSLSEVPVARNFGFQIT 114
           +W K +   +   + +Y+D K  +S               N    ++     +    ++ 
Sbjct: 31  SWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVK 90

Query: 115 TWDSKRTILSAVTAGIRNNWMSAIKRTA 142
             +    +L A      + W++++K  +
Sbjct: 91  LANGALFLLQAHDDTEMSQWVTSLKAQS 118

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (116), Expect = 7e-09
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 24/106 (22%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
           G ++ TW + WF+L    L Y+     +E     G++ L N++    +   +   F++  
Sbjct: 15  GGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENLSIREVLDPRKPNCFELYN 71

Query: 116 WDSKRT---------------------ILSAVTAGIRNNWMSAIKR 140
              K                        +SA +   +  WM +IK 
Sbjct: 72  PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 117

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-08
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFG----F 111
           G  +  W + +F L   ++ Y++    +E      V+ L  V  + E   +        F
Sbjct: 13  GAVMKNWKRRYFQLDENTIGYFKSELEKE---PLRVIPLKEVHKVQECKQSDIMMRDNLF 69

Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKRTAAM 144
           +I T  S+   + A +    ++W+ A+      
Sbjct: 70  EIVT-TSRTFYVQADSPEEMHSWIKAVSGAIVA 101

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFG----FQ 58
               W + +F L   ++ Y++    +E      V+ L  V  + E   +        F+
Sbjct: 14 AVMKNWKRRYFQLDENTIGYFKSELEKE---PLRVIPLKEVHKVQECKQSDIMMRDNLFE 70

Query: 59 ITTWTKHWFV 68
          I T ++ ++V
Sbjct: 71 IVTTSRTFYV 80

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 5e-08
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--RNFGFQI 113
           G    TW   W VL    + +Y+           G++ L   T  S       R F F+I
Sbjct: 15  GSVFNTWKPMWVVLLEDGIEFYKKKSDNS---PKGMIPLKGSTLTSPCQDFGKRMFVFKI 71

Query: 114 TTWDSKRTILSAVTAGIRNNWMSAIKR 140
           TT   +     A     R+ W+  I +
Sbjct: 72  TTTKQQDHFFQAAFLEERDAWVRDINK 98

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 5e-04
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA--RNFGFQIT 60
          +  +TW   W VL    + +Y+           G++ L   T  S       R F F+IT
Sbjct: 16 SVFNTWKPMWVVLLEDGIEFYKKKSDNS---PKGMIPLKGSTLTSPCQDFGKRMFVFKIT 72

Query: 61 TWTKHWFVLRGCS 73
          T  +     +   
Sbjct: 73 TTKQQDHFFQAAF 85

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 7e-08
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 53  RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEES-GVLDGVVALNNVTSLSEVPVARNFGF 111
           ++  F  + W K W V+      YY + K+++  G          +         +   F
Sbjct: 12  KDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCF 71

Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKRT 141
           ++T+ D +    +A +     +W+  I   
Sbjct: 72  ELTSQDRRTYEFTATSPAEARDWVDQISFL 101

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 8e-08
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
           G  + TW   WF L    L Y++D  + E      ++ L   +++               
Sbjct: 14  GGLVKTWKTRWFTLHRNELKYFKDQMSPE---PIRILDLTECSAVQFDYSQERVNCFCLV 70

Query: 116 WDSKRTILSAVTAGIRNNWMSAIKR 140
           +  +   L A T    + W+  ++ 
Sbjct: 71  FPFRTFYLCAKTGVEADEWIKILRW 95

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-07
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 3/85 (3%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
           G   +TW + ++  +G +L+            +D     N      +    R      + 
Sbjct: 18  GLVSSTWDRQFYFTQGGNLMSQARGDVAGGLAMD---IDNCSVMAVDCEDRRYCFQITSF 74

Query: 116 WDSKRTILSAVTAGIRNNWMSAIKR 140
              K +IL A +      W+  I  
Sbjct: 75  DGKKSSILQAESKKDHEEWICTINN 99

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 3e-07
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA------RNF 109
           G +   W    F+LR      +       +    G + L      S    +         
Sbjct: 12  GHRRKNWKVRKFILREDPAYLHYY-DPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEEN 70

Query: 110 GFQITTWDSKRTILSAVTAGIRNNWMSAIKR 140
            F+I T D     L A T   R  W+ AI+ 
Sbjct: 71  LFEIITADEVHYFLQAATPKERTEWIKAIQM 101

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-07
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 18/114 (15%)

Query: 45  SLSEVPVARNF---------GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALN 95
           SLS V ++            G +   W    FVLR      +    ++E     G  +L 
Sbjct: 1   SLSTVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLR 60

Query: 96  N--VTSLSEVPVA-------RNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR 140
              V++L +  V        +   F++ T D     + A +   R  W+ AIK+
Sbjct: 61  GSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKK 114

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 4e-04
 Identities = 13/75 (17%), Positives = 23/75 (30%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
          +K+  W    FVLR      +    ++E     G  +L      +        G +    
Sbjct: 22 HKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQ 81

Query: 63 TKHWFVLRGCSLLYY 77
             + V+      YY
Sbjct: 82 GNLFKVITKDDTHYY 96

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 4e-07
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RNFGFQITTW 116
           +W   + V+    + +Y+D K+  SG+        ++             +   F++   
Sbjct: 22  SWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLS 81

Query: 117 DSKRTILSAVTAGIRNNWMSAIKR 140
           D    +  A      N W+ AI  
Sbjct: 82  DGNEYLFQAKDDEEMNTWIQAISS 105

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 8e-04
 Identities = 8/74 (10%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 4  KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RNFGFQI 59
             +W   + V+    + +Y+D K+  SG+        ++             +   F++
Sbjct: 19 SSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKL 78

Query: 60 TTWTKHWFVLRGCS 73
               + ++ +   
Sbjct: 79 RLSDGNEYLFQAKD 92

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-07
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 60  TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTW 116
            TW++ W  +              + G L   + L +       P         +++   
Sbjct: 14  ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWA 73

Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTA 142
                 LSA +A ++  W+  +   A
Sbjct: 74  KQSW-YLSASSAELQQQWLETLSTAA 98

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 8/70 (11%), Positives = 20/70 (28%), Gaps = 3/70 (4%)

Query: 2  LNKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQ 58
               TW++ W  +              + G L   + L +       P         ++
Sbjct: 10 SESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWK 69

Query: 59 ITTWTKHWFV 68
          +    + W++
Sbjct: 70 LQWAKQSWYL 79

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 5e-07
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 14/107 (13%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
              +  W + +FVLR   L YY+D +  +      +         +    A  F F+I  
Sbjct: 18  RSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIP 77

Query: 116 WDSKRT-------ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
               +        +L A +      W+  ++R A        + PSS
Sbjct: 78  ASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA-------GSGPSS 117

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 3  NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTW 62
          +    W + +FVLR   L YY+D +  +      +         +    A  F F+I   
Sbjct: 19 SIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEI--I 76

Query: 63 TKHWFVLRGCSLLYY 77
             W   R     Y 
Sbjct: 77 PASWDQNRMGQDSYV 91

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-06
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 62  WTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRT 121
           W   W  +R   L +Y+D    +       ++L     + +      + F+I     +  
Sbjct: 15  WKSRWCSVRDNHLHFYQDRNRSKVA--QQPLSLVGCEVVPDPSPDHLYSFRILHKGEELA 72

Query: 122 ILSAVTAGIRNNWMSAIKRTAA 143
            L A ++    +W+  +   + 
Sbjct: 73  KLEAKSSEEMGHWLGLLLSESG 94

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 2  LNKK--HTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQI 59
          LN      W   W  +R   L +Y+D    +       ++L     + +      + F+I
Sbjct: 7  LNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVA--QQPLSLVGCEVVPDPSPDHLYSFRI 64

Query: 60 TTWTKHWFVLRGCS 73
              +    L   S
Sbjct: 65 LHKGEELAKLEAKS 78

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 33/120 (27%)

Query: 59  ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
           + +WTK W VL+   LL Y+  K  +     G V LN    +        F F++     
Sbjct: 20  LKSWTKLWCVLKPGVLLIYKTQKNGQ---WVGTVLLNACEIIERPSKKDGFCFKLFHPLE 76

Query: 119 KRT-----------------------ILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
           +                         I+ A +      WM A++          K+ PSS
Sbjct: 77  QSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELAL-------KSGPSS 129

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-06
 Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 29/112 (25%)

Query: 57  FQITTWTKHWFVLRGCSLLYYRDPKAEE----------------------------SGVL 88
                + K  F+L    L YY                                      +
Sbjct: 19  TSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQI 78

Query: 89  DGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR 140
                 ++      +     + FQ+   D     + + T  +R  W+  +K 
Sbjct: 79  PRRGEESSEMEQISIIERFPYPFQVVY-DEGPLYVFSPTEELRKRWIHQLKN 129

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (96), Expect = 4e-06
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 53  RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEES-GVLDGVVALNNVTSLSEVPVARNFGF 111
           ++  F    W K W  L      YY   K ++  G          + +       ++  F
Sbjct: 20  KDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCF 79

Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKR 140
           +I   D +    +A +      W+  +K 
Sbjct: 80  EICAPDKRIYQFTAASPKDAEEWVQQLKF 108

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 5e-06
 Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 61  TWTKHWFVLRGCS-------LLYYRDPKAEESG--VLDGVVALNNVTSLSEVPVARNFGF 111
           +  K +FVLR  S       L YY + K            + L +  ++++   ++N   
Sbjct: 13  SMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHL 72

Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKR 140
                  +   ++A +   +++W  A+ +
Sbjct: 73  VALYTRDEHFAIAADSEAEQDSWYQALLQ 101

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (96), Expect = 7e-06
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 60  TTWTKHWFVLRGCSLL------YYRDPKAEESGVLDGVVALNNVTSLSEVP-VARNFGFQ 112
             W K   +LR           ++  PKA    V   + A+  V +   +    ++  F 
Sbjct: 40  AQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFV 99

Query: 113 ITTWDSKRTILSAVTAGIRNNWMSAIKR 140
           +   +    IL  + +  +++W++ I+ 
Sbjct: 100 LKVENGAEYILETIDSLQKHSWVADIQG 127

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 9e-06
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 10/109 (9%)

Query: 45  SLSEVPVARN-----FGFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNV 97
           S+S+V + +       G  I TW   +F+L+     + Y   P+  +             
Sbjct: 1   SMSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQ 60

Query: 98  TSLSEVPVARNFGFQITTWD---SKRTILSAVTAGIRNNWMSAIKRTAA 143
             L +    R   F I                T   R  W +AI+  A 
Sbjct: 61  CQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD 109

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA----RNFGFQITTW 116
           +W   + VLR  SL +Y+D KA  +GV        ++             R   F++   
Sbjct: 31  SWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQ 90

Query: 117 DSKRTILSAVTAGIRNNWMSAIKRTAA 143
           D K  +  A      ++W+  +    A
Sbjct: 91  DGKEYLFQAKDEAEMSSWLRVVNAAIA 117

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKR 120
            W  H+FVL    + Y  +  ++    +  V A                        ++ 
Sbjct: 16  EWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQW 75

Query: 121 T-ILSAVTAGIRNNWMSAIKRTAAMS 145
           +  ++A +     +W+  I+  A  +
Sbjct: 76  SLDVAADSQEELQDWVKKIREVAQTA 101

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 17/107 (15%), Positives = 26/107 (24%), Gaps = 15/107 (14%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARN------- 108
           G  +  W   WFVL                    GV+ L  V +++              
Sbjct: 18  GAFMKPWKARWFVLDKTKHQLRYYDH-RMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDE 76

Query: 109 FGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSS 155
             F       +     A        W+  I+           + PSS
Sbjct: 77  KAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCL-------SSGPSS 116

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-05
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 53  RNFGFQITTWTKHWFVLRGCSLLYYRD-PKAEESGVLDGVVALNNVTSLSEVPVARNFGF 111
           +  G  I  W + + VLRG SL  Y+D  +       +  +++N           +    
Sbjct: 18  KRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNV 77

Query: 112 QITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSLLDDKASPSSSTVQQ 160
              T      +  A        W+  I + ++    +D    +   + +
Sbjct: 78  FRLTTSDCECLFQAEDRDDMLAWIKTI-QESSNLNEEDTGVTNRDLISR 125

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-05
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 53  RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQ 112
            N G       ++WFVL   +L +Y+D + +E   +  V  L           +++    
Sbjct: 12  NNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFAL 71

Query: 113 ITTW------DSKRTILSAVTAGIRNNWMSAIKRTA 142
             T       D ++  L+  T    ++W ++  R  
Sbjct: 72  FNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG 107

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 8e-05
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKR 120
            + K W    G S+ YY + K            +  ++++S V V  +  F++ T     
Sbjct: 17  MFQKRWVKFDGLSISYYNNEKEMY------SKGIIPLSAISTVRVQGDNKFEVVTTQRTF 70

Query: 121 TILSAVTAGIRNNWMSAIKRTAAMSLLDDK 150
                     RN+W+S +        L  +
Sbjct: 71  V-FRVEKEEERNDWISILLNALKSQSLTSQ 99

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 9e-05
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 20/121 (16%)

Query: 53  RNFGFQITTWTKHWFVLRGCS-----LLYYRDPKAEESGVLDGVVALNNVTSLSEVPVAR 107
                 + ++ + +F L         L +Y+D K   S    G + L++   + +    R
Sbjct: 31  SAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEK--ISKEPKGSIFLDSCMGVVQNNKVR 88

Query: 108 NFGFQITTWDSKRTILSAVTAGIRNNWMSAIKRTA-------------AMSLLDDKASPS 154
            F F++   D    +L+A +      W++ + +                 S  DD++ PS
Sbjct: 89  RFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDSHEDDESGPS 148

Query: 155 S 155
           S
Sbjct: 149 S 149

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 10/81 (12%)

Query: 61  TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKR 120
              +   +L     LYY DP  +          L      S+        F+     +  
Sbjct: 61  FARRRQLLLTEGPHLYYVDPVNKV---------LKGEIPWSQELRPEAKNFKTFFVHTPN 111

Query: 121 TILS-AVTAGIRNNWMSAIKR 140
                   +G  + W   I+ 
Sbjct: 112 RTYYLMDPSGNAHKWCRKIQE 132

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 60  TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSK 119
           T W + +F L    L +  + +A        ++ +  + S+ E  +       +     K
Sbjct: 25  TQWQRRYFYLFPNRLEWRGEGEAP-----QSLLTMEEIQSVEETQIKERKCLLLKIRGGK 79

Query: 120 RTILSAVTAGIRNNWMSAIKRTAAMS 145
           + +L   +      W   ++     +
Sbjct: 80  QFVLQCDSDPELVQWKKELRDAYREA 105

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 59  ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS 118
           +        +L+  S        +++      V+ LN V  +  V   +   F I T   
Sbjct: 54  LLQKQDEKLLLKCHSKTAVGSSDSKQ--TFSPVLKLNAV-LIRSVATDKRAFFIICTSKL 110

Query: 119 KRT---ILSAVTAGIRNNWMSAIKRT 141
                  L A+T+  +N WM  ++  
Sbjct: 111 GPPQIYELVALTSSDKNTWMELLEEA 136

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 55  FGFQITTWTKHWFVLRGCSLLYYRDPKAEES-GVLDGVVALNNVTSLSEVPVA---RNFG 110
           +  + T   +H++ L    +  +++         +     L   ++ +   V        
Sbjct: 10  YSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHC 69

Query: 111 FQITTWD----------SKRTILSAVTAGIRNNWMSAIKRTAAM 144
           F+I T +                S   A     W +AI R A M
Sbjct: 70  FEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAI-RQALM 112

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 2/90 (2%)

Query: 56  GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT 115
                 +  +W  LRG +L +Y D K+        +V L  +T  +              
Sbjct: 21  RSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCA--KFTLV 78

Query: 116 WDSKRTILSAVTAGIRNNWMSAIKRTAAMS 145
              +   L          W   I     +S
Sbjct: 79  LPKEEVQLKTENTESGEEWRGFILTVTELS 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.89
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.86
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.85
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.83
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.83
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.83
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.82
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.82
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.82
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.82
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.82
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.81
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.8
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.8
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.79
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.79
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.78
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.78
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.78
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.78
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.78
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.77
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.77
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.76
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.75
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.75
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.73
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.69
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.67
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	99.32
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.26
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.1
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.08
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.08
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	99.07
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	98.97
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	98.96
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	98.96
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	98.91
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	98.86
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	98.85
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	98.84
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	98.82
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	98.82
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	98.78
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	98.74
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	98.74
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.72
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	98.69
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	98.69
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	98.68
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	98.68
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.68
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	98.67
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	98.66
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	98.64
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	98.63
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.63
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	98.6
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	98.57
d1wi1a_	126	Calcium-dependent activator protein for secretion,	98.54
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	98.53
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	98.52
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	98.51
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.51
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	98.5
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	98.39
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	98.38
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	98.08
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	98.04
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.99
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	97.94
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	97.82
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	97.64
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	97.39
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	96.58
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	95.29
d1foea2	162	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	94.34
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	94.19
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	87.46

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.9e-23  Score=133.82  Aligned_cols=87  Identities=20%  Similarity=0.318  Sum_probs=76.7

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      .|.|...++|++|||||.++.|+||+++.+..+   .|.|+|.++..+..... .++++|+|.+++ ++|+|+|+|++|+
T Consensus        11 ~K~~~~~k~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~-r~~~l~a~s~~~~   86 (100)
T d1faoa_          11 TKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEP---IRILDLTECSAVQFDYSQERVNCFCLVFPF-RTFYLCAKTGVEA   86 (100)
T ss_dssp             EEECSSSCCEEEEEEEEETTEEEEESSTTCSSC---SEEEEGGGCCEEEEECSSSSSSEEEEEETT-EEEEEECSSHHHH
T ss_pred             EEeCCCCCCceEEEEEEECCEEEEEeccCCccC---ceEEechheEEEEeccccccccccccccCC-eEEEEEeCCHHHH
Confidence            345566789999999999999999999988777   89999999987666544 678999999986 8999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy8929         132 NNWMSAIKRTAA  143 (160)
Q Consensus       132 ~~Wi~al~~~~~  143 (160)
                      ++||.||+++|.
T Consensus        87 ~~Wi~ai~~~i~   98 (100)
T d1faoa_          87 DEWIKILRWKLS   98 (100)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999885

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.6e-22  Score=131.06  Aligned_cols=85  Identities=13%  Similarity=0.256  Sum_probs=73.8

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-------CCCceEEEEeCCCcEEEEEc-
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-------ARNFGFQITTWDSKRTILSA-  125 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-------~~~~~F~i~t~~~r~~~l~a-  125 (160)
                      |.|...+.|++|||||++++|+||+++.+..+   .|.|+|.++..+....+       .++++|+|+|++ |+|||.+ 
T Consensus         9 k~~~~~~~wkkRwFvL~~~~L~YYk~~~~~~p---~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~-rtyy~~~~   84 (112)
T d2coaa1           9 HYSNKDTLRKRHYWRLDCKCITLFQNNTTNRY---YKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN-ATYFVGEM   84 (112)
T ss_dssp             ECCSSSCCCEEEEEEECSSEEEEESSSSCSSC---SEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS-CCCCEECC
T ss_pred             EECCCCCCeeEEEEEEEcceEEEEeccCCCcc---ceEEeeeccccccccccccccccCCCccEEEEEeCC-eEEEEecC
Confidence            44556789999999999999999999999887   89999999998776533       467999999986 9999966 


Q ss_pred             ----------CCHHHHHHHHHHHHHHh
Q psy8929         126 ----------VTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       126 ----------~s~~e~~~Wi~al~~~~  142 (160)
                                ++++++.+|++||++|+
T Consensus        85 ~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          85 PGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             SCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             CccccccccccChHHHHHHHHHHHHhh
Confidence                      77889999999999986

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.9e-21  Score=125.05  Aligned_cols=90  Identities=19%  Similarity=0.364  Sum_probs=76.0

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      |+.+...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+...   ++++|.|.+++ ++|+|+|+|++|++
T Consensus         9 K~~~~~~~~W~kr~fvL~~~~L~~~~~~~~~~~---~~~i~L~~~~~~~~~---~~~~f~i~~~~-~~~~l~a~s~~e~~   81 (102)
T d2coda1           9 KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYS---KGIIPLSAISTVRVQ---GDNKFEVVTTQ-RTFVFRVEKEEERN   81 (102)
T ss_dssp             ECCSSSSSCCEEEEEEECSSEEEEEESSCCSSC---CCEEETTTEEEEEEE---TTTEEEEEESS-CCEEEECSSHHHHH
T ss_pred             EECCCCCCCceEEEEEEECCEEEEEeccCccee---EEEEEchhceeeccc---cceeEEEEcCC-cEEEEEeCCHHHHH
Confidence            333344678999999999999999999998877   899999998865543   67999999985 89999999999999


Q ss_pred             HHHHHHHHHhcccCCCC
Q psy8929         133 NWMSAIKRTAAMSLLDD  149 (160)
Q Consensus       133 ~Wi~al~~~~~~~~~~~  149 (160)
                      +||.||+.++.......
T Consensus        82 ~Wi~ai~~~i~~~~~~~   98 (102)
T d2coda1          82 DWISILLNALKSQSLTS   98 (102)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhCcCCC
Confidence            99999999987544433

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.8e-21  Score=125.25  Aligned_cols=84  Identities=19%  Similarity=0.352  Sum_probs=71.3

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCC-------CcEEEEEcCC
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWD-------SKRTILSAVT  127 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~-------~r~~~l~a~s  127 (160)
                      ..+.|++|||||+++.|+||+++++..+   .|.|+|.++. |..++.   +++++|.|.++.       +++|+|+|+|
T Consensus        17 ~~~~WkkRwFvL~~~~L~yyk~~~~~~~---~~~i~l~~~~-v~~~~~~~~~~~~~F~l~~~~~~~~~~~~r~~~l~a~s   92 (111)
T d2dyna_          17 MKGGSKEYWFVLTAENLSWYKDDEEKEK---KYMLSVDNLK-LRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACET   92 (111)
T ss_dssp             TTTSSEEEEEEEESSEEEEESSTTCCCE---EEEEECTTEE-EEEECCCSTTCSEEEEEEESSCSCSBTTBSSEEEEESS
T ss_pred             CcCCceEEEEEEECCEEEEEcchhhccc---ccccccccce-eEeeccccccccccEEeeeccccccccCceeEEEECCC
Confidence            3567999999999999999999988776   8999999986 444332   688999998753       3789999999


Q ss_pred             HHHHHHHHHHHHHHhccc
Q psy8929         128 AGIRNNWMSAIKRTAAMS  145 (160)
Q Consensus       128 ~~e~~~Wi~al~~~~~~~  145 (160)
                      ++|+.+|++||.+|...|
T Consensus        93 ~ed~~~W~~al~~A~~~p  110 (111)
T d2dyna_          93 QEEVDSWKASFLRAGVYP  110 (111)
T ss_dssp             HHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHhccCC
Confidence            999999999999987654

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.6e-20  Score=121.78  Aligned_cols=87  Identities=18%  Similarity=0.255  Sum_probs=73.5

Q ss_pred             eeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCC--CcEEEEEcCCHHH
Q psy8929          55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWD--SKRTILSAVTAGI  130 (160)
Q Consensus        55 ~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~--~r~~~l~a~s~~e  130 (160)
                      .+...+.|++|||+|.++.|+||+++.+..+   .|.|+|.++..+.....  +++++|.|.++.  +++|+|+|+|++|
T Consensus        10 ~~~~~k~W~kR~fvL~~~~L~yy~~~~~~~~---~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~a~s~~e   86 (101)
T d2fjla1          10 EDPVNHEWYPHYFVLTSSKIYYSEETSSDLL---RGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEE   86 (101)
T ss_dssp             EETTTTEEEEEEEEEETTEEEECCCCSCTCC---CEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHH
T ss_pred             EcCCCCCCeEEEEEEECCEEEEEecccccee---cceEEcCCceeEeeeeecccccceeEEeccccccEEEEEEeCCHHH
Confidence            3445678999999999999999999888777   89999999985443332  578999999863  4789999999999


Q ss_pred             HHHHHHHHHHHhcc
Q psy8929         131 RNNWMSAIKRTAAM  144 (160)
Q Consensus       131 ~~~Wi~al~~~~~~  144 (160)
                      +.+||.||+++++.
T Consensus        87 ~~~Wi~ai~~~~~~  100 (101)
T d2fjla1          87 LQDWVKKIREVAQT  100 (101)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999863

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-20  Score=128.27  Aligned_cols=90  Identities=18%  Similarity=0.241  Sum_probs=77.1

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      +.|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+....+  ..+++|.|.+++ ++|+|+|+|++|+
T Consensus        19 k~~~~~k~WkkrwfvL~~~~L~yY~~~~d~~~---~~~i~L~~~~~~~~~~~~~~~~~~F~i~~~~-~~~~f~Aes~~e~   94 (136)
T d1x1fa1          19 IKRSGYREYEHYWTELRGTTLFFYTDKKSIIY---VDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK-EEVQLKTENTESG   94 (136)
T ss_dssp             EECTTCCSCEEEEEEEETTEEEEESCSSCSSC---SEECCCSSCCEEEECCCTTSCCCEEEEECSS-CCEEEECSSHHHH
T ss_pred             EECCCCCCeEEEEEEEcCCEeEEEeecccccc---cccccccceeeeeeecccccccceeeecCCC-ceEEEEeCCHHHH
Confidence            34556789999999999999999999988777   89999999986665433  467999999986 8999999999999


Q ss_pred             HHHHHHHHHHhcccCC
Q psy8929         132 NNWMSAIKRTAAMSLL  147 (160)
Q Consensus       132 ~~Wi~al~~~~~~~~~  147 (160)
                      ++|+.+|+.++....+
T Consensus        95 ~~Wi~~I~~v~~~~~p  110 (136)
T d1x1fa1          95 EEWRGFILTVTELSVP  110 (136)
T ss_dssp             HHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHhccCC
Confidence            9999999999875433

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-20  Score=120.73  Aligned_cols=82  Identities=15%  Similarity=0.356  Sum_probs=69.9

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIK  139 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~  139 (160)
                      ..|++|||||+++.|+||+++.+...  +.|.|+|.++..+......++++|.|+++++++|+|+|+|++|+++||.+|+
T Consensus        13 ~~WkkR~fvL~~~~L~yyk~~~~~~~--~~~~i~l~~~~v~~~~~~~~~~~f~~~~~~~~~~~l~A~s~~e~~~Wi~~L~   90 (95)
T d2cofa1          13 SQWKSRWCSVRDNHLHFYQDRNRSKV--AQQPLSLVGCEVVPDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLL   90 (95)
T ss_dssp             TEEEEEEEEECSSCEEEECSSTTCSE--EEEEECTTTCEEECCCBTTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHH
T ss_pred             CCceEEEEEEECCEEEEEeccccccc--ccccccccceEEEecccccceecceeccccceeEEeeCCCHHHHHHHHHHHH
Confidence            56999999999999999998765432  3899999999854444446789999998888999999999999999999999


Q ss_pred             HHhc
Q psy8929         140 RTAA  143 (160)
Q Consensus       140 ~~~~  143 (160)
                      .+.+
T Consensus        91 ~~tg   94 (95)
T d2cofa1          91 SESG   94 (95)
T ss_dssp             HHSS
T ss_pred             HHhC
Confidence            8764

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-20  Score=126.76  Aligned_cols=85  Identities=25%  Similarity=0.368  Sum_probs=70.9

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCC-----------------
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS-----------------  118 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~-----------------  118 (160)
                      +...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+......++++|+|.++.+                 
T Consensus        17 ~~~~k~WkkRwfvL~~~~L~yyk~~~~~~~---~g~i~L~~~~v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~   93 (130)
T d1v88a_          17 RGTLKSWTKLWCVLKPGVLLIYKTQKNGQW---VGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSI   93 (130)
T ss_dssp             CCSSSSCEEEEEEEETTEEEEESCSSSCCC---CEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCC
T ss_pred             CCCCCCceEEEEEEeCCEEEEEcCCCCCcc---eeEEECCCeEEEEccccCCCceEEEEcCCCcceecccCcccccceeE
Confidence            345789999999999999999999988777   899999999854444446788999975432                 


Q ss_pred             ------cEEEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         119 ------KRTILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       119 ------r~~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                            +.|+|+|+|++|+++||+||+.++.
T Consensus        94 ~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~  124 (130)
T d1v88a_          94 TQPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             CSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EecCCcEEEEEECCCHHHHHHHHHHHHHHhh
Confidence                  3368999999999999999999985

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=120.28  Aligned_cols=80  Identities=15%  Similarity=0.261  Sum_probs=68.8

Q ss_pred             eeceEEEEEEeCC---EEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          60 TTWTKHWFVLRGC---SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        60 ~~WkkrwfvL~~~---~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      +.|++|||||+++   .|+||+++++..+   .|.|+|.++..+.....   .++++|.|.+++ ++|+|+|+|++|+++
T Consensus        14 k~W~krwfvL~~~~~~~ly~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~-r~~~l~A~s~~e~~~   89 (99)
T d2coca1          14 ETWSEVWAAIPMSDPQVLHLQGGSQDGRL---PRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLSASSAELQQQ   89 (99)
T ss_dssp             SCEEEEEEECCTTCTTCEEEECCTTCSSS---CSEECGGGCEEECCCSSSCCSSSEEEEEEETT-EEEEEEESSHHHHHH
T ss_pred             CCccEEEEEEecCCccEEEEECcCccccc---cccccccceeeeecccccccCCceEEEEEcCC-cEEEEECCCHHHHHH
Confidence            6899999999976   5999999988777   89999999985443222   578999999985 899999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||+||++|++
T Consensus        90 Wi~aL~~Aa~   99 (99)
T d2coca1          90 WLETLSTAAH   99 (99)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhcC
Confidence            9999999863

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.7e-20  Score=121.20  Aligned_cols=83  Identities=18%  Similarity=0.348  Sum_probs=72.3

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ....|++|||||+++.|+||+++.+..+   .|.|+|.++..+.....    .++++|.|++++++.|+|+|+|++|+++
T Consensus        25 ~~~~W~~r~~vL~~~~L~~y~~~~~~~p---~g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~  101 (111)
T d1u5fa1          25 LGFEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEE  101 (111)
T ss_dssp             SSCSEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEECTTSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHH
T ss_pred             CcCCceEEEEEEECCEEEeeccccccCc---ceEEEecccEEEeeccccccccccceEEEEccCCcEEEEEcCCHHHHHH
Confidence            3568999999999999999999988777   89999999986544322    4679999999888999999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      |++||+.++.
T Consensus       102 W~~ai~~~i~  111 (111)
T d1u5fa1         102 WVQQLKFILQ  111 (111)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHhC
Confidence            9999999863

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.5e-20  Score=125.30  Aligned_cols=90  Identities=22%  Similarity=0.386  Sum_probs=65.8

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCcc-CCccceeEEcCCceeeeecC--CCCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVP--VARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~-~~~~~g~I~L~~~~~v~~~~--~~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      ++.++..+.|++|||||+++.|+||+++.+.. ...+.+.|+|.+|.. ...+  ..++++|.|.+++ ++|+|+|+|++
T Consensus        18 kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v-~~~~~~~~r~~~F~i~~~~-~~~~f~A~s~~   95 (133)
T d2j59m1          18 KRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLI-DISYSETKRKNVFRLTTSD-CECLFQAEDRD   95 (133)
T ss_dssp             --------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEE-EECSSSCSCSSEEEEECSS-CEEEEECSSHH
T ss_pred             cccCCCCCCceEEEEEEeCCEEEEEeccccccccccccccceecceEE-EEcccccccCceeEEecCC-CEEEEEeCCHH
Confidence            56677888999999999999999999876632 223478999999984 3333  2688999999986 89999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy8929         130 IRNNWMSAIKRTAAM  144 (160)
Q Consensus       130 e~~~Wi~al~~~~~~  144 (160)
                      |+++||.+|+.++..
T Consensus        96 e~~~Wi~ai~~a~~~  110 (133)
T d2j59m1          96 DMLAWIKTIQESSNL  110 (133)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998764

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.9e-20  Score=121.11  Aligned_cols=91  Identities=23%  Similarity=0.375  Sum_probs=78.7

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      |.|...++|++|||||.++.|+||+++.+..+   .+.|+|.++..+....+  .++++|.|++.+++.|+|+|+|++|+
T Consensus        13 k~~~~~k~WkkryfvL~~~~L~~y~~~~~~~p---~~~i~l~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~a~s~~e~   89 (113)
T d1plsa_          13 KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSP---KGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQAAFLEER   89 (113)
T ss_dssp             EESSSSSCCEEEEEEEETTEEEEESSTTCSSC---SEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEECSSHHHH
T ss_pred             EeCCCCCCceEEEEEEECCEEEEEecCCcccc---ceEEECccCeEEeeecccCCcceEEEEecCCCeEEEEECCCHHHH
Confidence            44556789999999999999999999988777   89999999986665543  57789999998889999999999999


Q ss_pred             HHHHHHHHHHhcccCC
Q psy8929         132 NNWMSAIKRTAAMSLL  147 (160)
Q Consensus       132 ~~Wi~al~~~~~~~~~  147 (160)
                      .+|+.+|+.++.....
T Consensus        90 ~~Wi~ai~~ai~~~~~  105 (113)
T d1plsa_          90 DAWVRDINKAIKCIEG  105 (113)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcC
Confidence            9999999999985543

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.1e-19  Score=119.12  Aligned_cols=86  Identities=16%  Similarity=0.183  Sum_probs=73.8

Q ss_pred             eeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          55 FGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        55 ~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ++...+.|++|||||.++.|+||+++.+..+   .+.|+|.++..+...+. .++++|.|.+++++.|+|+|++++|+++
T Consensus        17 ~~~~~~~W~kr~~vL~~~~L~~~k~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~f~a~s~~~~~~   93 (109)
T d1wgqa_          17 SKGSKKPWKHLWFVIKNKVLYTYAASEDVAA---LESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQR   93 (109)
T ss_dssp             ESSTTSCCEEEEEEEETTEEEEESCTTCSSC---SEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEECSSHHHHHH
T ss_pred             ECCCCCCceEEEEEEeCCEEEEecccccccc---ccccccceeeeeecccccccceeeeeecccceEEEEECCCHHHHHH
Confidence            3445578999999999999999999988776   79999999885444333 6889999999877899999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||.||+.++.
T Consensus        94 Wi~ai~~a~~  103 (109)
T d1wgqa_          94 WIDAFQEGTV  103 (109)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhc
Confidence            9999999985

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.3e-20  Score=118.90  Aligned_cols=85  Identities=28%  Similarity=0.521  Sum_probs=73.0

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      +...+.|++|||||.++.|+||+++.+..+   .+.|+|.++..+.....   +.+++|.|.++++++|+|+|+|++|++
T Consensus        20 ~~~~k~W~kr~~vL~~~~L~~y~~~~~~~~---~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~s~~e~~   96 (107)
T d1upqa_          20 SSGLRLWKRRWFVLSGHCLFYYKDSREESV---LGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLR   96 (107)
T ss_dssp             SSSSCCEEEEEEEEETTEEEEESSTTCCSC---CEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEECSSHHHHH
T ss_pred             CCCCCCeeEEEEEEECCEEEEecCcccccc---cceecccceEEEEeccCcccCcceEEEEEcCCCeEEEEEcCCHHHHH
Confidence            345678999999999999999999988777   79999999985443322   567899999988899999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8929         133 NWMSAIKRTAA  143 (160)
Q Consensus       133 ~Wi~al~~~~~  143 (160)
                      +||.||+.|++
T Consensus        97 ~Wi~al~~A~~  107 (107)
T d1upqa_          97 GWLRALGRASR  107 (107)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999999863

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.7e-20  Score=119.43  Aligned_cols=83  Identities=17%  Similarity=0.370  Sum_probs=72.2

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ..+.|++|||||+++.|+||+++.+..+   .|.|+|.++........    .++++|.|.+.++++|+|+|+|++|+++
T Consensus        17 ~~~~Wkkr~~vL~~~~L~y~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~   93 (106)
T d1u5da1          17 FGSEWQKRWCVVSRGLFYYYANEKSKQP---KGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARD   93 (106)
T ss_dssp             SCEEEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHH
T ss_pred             CcCCcEEEEEEEECCEEEEEeccccccc---ccccccCCceEeeccccccccCCceeEEEEcCCCcEEEEEeCCHHHHHH
Confidence            3578999999999999999999988877   89999999885433221    4679999999877899999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||+||+.++.
T Consensus        94 W~~ai~~~i~  103 (106)
T d1u5da1          94 WVDQISFLLK  103 (106)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999885

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.4e-20  Score=117.96  Aligned_cols=86  Identities=20%  Similarity=0.378  Sum_probs=75.2

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      |+|...++|++|||+|.++.|+||+++.+..+   .|.|+|..+..+.....    ...++|.|.+++ ++|+|+|+|++
T Consensus        11 K~~~~~~~Wkkr~fvL~~~~l~yy~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~-~~~~~~a~s~~   86 (103)
T d1eaza_          11 KQGAVMKNWKRRYFQLDENTIGYFKSELEKEP---LRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RTFYVQADSPE   86 (103)
T ss_dssp             EECTTTCCEEEEEEEECSSEEEEESSTTCSSC---SEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS-CEEEEECSSHH
T ss_pred             EECCCCCCeeEEEEEEECCEEEEEecccCccc---ceEEEccceEEeeccccccccccceEEEEEeCC-EEEEEEeCCHH
Confidence            44556678999999999999999999988776   89999999987666543    578999999985 89999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy8929         130 IRNNWMSAIKRTAA  143 (160)
Q Consensus       130 e~~~Wi~al~~~~~  143 (160)
                      |+++|+.+|+.++.
T Consensus        87 e~~~W~~aI~~ai~  100 (103)
T d1eaza_          87 EMHSWIKAVSGAIV  100 (103)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999985

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.6e-19  Score=123.79  Aligned_cols=82  Identities=20%  Similarity=0.439  Sum_probs=70.3

Q ss_pred             eeeceEEEEEEeCC-----EEEEEeCCCC-ccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          59 ITTWTKHWFVLRGC-----SLLYYRDPKA-EESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        59 ~~~WkkrwfvL~~~-----~L~yyk~~~~-~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      .+.|++|||||+++     .|.||+++.. ..+   .|.|+|..+..+......++++|.|+++++++|+|+|+|++|++
T Consensus        37 ~k~WkkR~fvL~~~~~~~~~L~yy~~~~~~~~~---~g~i~l~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~A~s~~e~~  113 (150)
T d1wg7a_          37 MRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEP---KGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEME  113 (150)
T ss_dssp             HSSCEEEEEEEEECSSSCEEEEEESSSCCSSCC---SEEECTTTCCEECCCCSSCTTEEEEECSSSCEEEEECSSHHHHH
T ss_pred             cccceEEEEEEEcCcCCceeEEEEecccccccc---ccccccccccccccCccccceEEEEEcCCCeEEEEEeCCHHHHH
Confidence            36799999999864     5888887764 344   89999999997766666788999999987789999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8929         133 NWMSAIKRTAA  143 (160)
Q Consensus       133 ~Wi~al~~~~~  143 (160)
                      +||.||+.++.
T Consensus       114 ~Wi~aL~~~i~  124 (150)
T d1wg7a_         114 EWITILNKILQ  124 (150)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999886

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=3.2e-19  Score=118.87  Aligned_cols=83  Identities=13%  Similarity=0.274  Sum_probs=68.9

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHH
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWM  135 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi  135 (160)
                      +.....|++|||||.++.|+||+++.+.     .+.|.|..+..|.......+++|.|+++++++|+|+|+|++|+.+||
T Consensus        21 ~~~~~~WkkR~fvL~~~~L~yy~~~~~~-----~~~i~l~~~~~v~~~~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~   95 (119)
T d1omwa2          21 NPFLTQWQRRYFYLFPNRLEWRGEGEAP-----QSLLTMEEIQSVEETQIKERKCLLLKIRGGKQFVLQCDSDPELVQWK   95 (119)
T ss_dssp             ------CEEEEEEEETTEEEEECTTSCC-----CEEEEGGGEEEEEEEESSSCEEEEEEETTSCEEEEECSSHHHHHHHH
T ss_pred             CCCCCCeEEEEEEEEcCeEEEEeccccc-----CccceeccccccccccccccceEEEEcCCCcEEEEECCCHHHHHHHH
Confidence            3345679999999999999999877653     47899998888877766778999999887799999999999999999


Q ss_pred             HHHHHHhc
Q psy8929         136 SAIKRTAA  143 (160)
Q Consensus       136 ~al~~~~~  143 (160)
                      .+|+.|+.
T Consensus        96 ~al~~a~~  103 (119)
T d1omwa2          96 KELRDAYR  103 (119)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999877

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=7.7e-19  Score=117.53  Aligned_cols=89  Identities=21%  Similarity=0.469  Sum_probs=73.4

Q ss_pred             ceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEe------------------
Q psy8929          54 NFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITT------------------  115 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t------------------  115 (160)
                      |.|...+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+...+..++++|.+..                  
T Consensus        13 K~~~~~k~WkrR~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (127)
T d1fgya_          13 KLGGRVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGR   89 (127)
T ss_dssp             EECSSSCCEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSC
T ss_pred             EECCCCCCcEEEEEEEECCEEEEEccCCCccc---cceEeCCCeEEEEccCCCCCceEEEecccccccccccccccccee
Confidence            44556789999999999999999999988877   899999999855544445677776642                  


Q ss_pred             ---CCCcEEEEEcCCHHHHHHHHHHHHHHhccc
Q psy8929         116 ---WDSKRTILSAVTAGIRNNWMSAIKRTAAMS  145 (160)
Q Consensus       116 ---~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~  145 (160)
                         .+.++|+|+|+|++|+.+||.||+.+|...
T Consensus        90 ~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~~  122 (127)
T d1fgya_          90 VVEGNHVVYRISAPSPEEKEEWMKSIKASISRD  122 (127)
T ss_dssp             EEECCCSEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             EeeCCCeEEEEECCCHHHHHHHHHHHHHHHccC
Confidence               234789999999999999999999998743

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.8e-19  Score=129.11  Aligned_cols=82  Identities=18%  Similarity=0.358  Sum_probs=72.4

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCCHHHHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVTAGIRNNW  134 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s~~e~~~W  134 (160)
                      .+.|++|||||+++.|+||+++.+..+   .|.|+|.++..+.....    .++++|.|+++++|+|+|+|+|++|+..|
T Consensus       121 ~~~Wkkr~fvL~~~~L~yy~~~~~~~~---~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~f~a~s~~e~~~W  197 (209)
T d1u5ea1         121 GFEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEW  197 (209)
T ss_dssp             TCCCEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHH
T ss_pred             cccceEEEEEEECCEEEEEecCCCCcc---ceEEEecceeeeeccccccccCCCcEEEEEcCCCCEEEEEcCCHHHHHHH
Confidence            468999999999999999999998887   89999999985443321    46799999998889999999999999999


Q ss_pred             HHHHHHHhc
Q psy8929         135 MSAIKRTAA  143 (160)
Q Consensus       135 i~al~~~~~  143 (160)
                      |.+|+.+|.
T Consensus       198 i~al~~~i~  206 (209)
T d1u5ea1         198 VQQLKFILQ  206 (209)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999885

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.8e-19  Score=122.99  Aligned_cols=85  Identities=16%  Similarity=0.327  Sum_probs=72.0

Q ss_pred             eeeeeeceEEEEEEeCC------EEEEEeCCCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEc
Q psy8929          56 GFQITTWTKHWFVLRGC------SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSA  125 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~------~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a  125 (160)
                      +...+.|++|||||+++      .|.||+++.+..+   .|.|.|..+..+.....    .++|+|.|.+++++.|+|+|
T Consensus        36 ~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~---~g~i~l~~~~~~~~~~~~~~~~~~~~F~l~t~~~~~y~f~A  112 (136)
T d1v5ma_          36 PGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRP---KVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILET  112 (136)
T ss_dssp             SCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSC---SSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCBEEEEC
T ss_pred             CCCCCCceEEEEEEeCCcccchhhhhhhCcccccCc---CcceecccceeeeeeccccCCCCCcEEEEEcCCCcEEEEEC
Confidence            34568899999999875      5899999999887   89999998765443321    57899999999877899999


Q ss_pred             CCHHHHHHHHHHHHHHhc
Q psy8929         126 VTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       126 ~s~~e~~~Wi~al~~~~~  143 (160)
                      +|++|+++||++|+.++.
T Consensus       113 ~s~~e~~~Wv~ai~~ai~  130 (136)
T d1v5ma_         113 IDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999999986

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.5e-19  Score=124.74  Aligned_cols=88  Identities=18%  Similarity=0.286  Sum_probs=72.1

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCcc-CCccceeEEcCCceeeeecCC---------------------------CCCc
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVPV---------------------------ARNF  109 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~-~~~~~g~I~L~~~~~v~~~~~---------------------------~~~~  109 (160)
                      ...+|++|||||+++.|+||+++.+.. ...+.|.|+|.++..|...+.                           ...+
T Consensus        20 ~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d1btka_          20 SPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPY   99 (169)
T ss_dssp             CCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCE
T ss_pred             CcCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCccccccccccccccccccccccccCc
Confidence            345799999999999999999876632 123489999999987655321                           3468


Q ss_pred             eEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhcccC
Q psy8929         110 GFQITTWDSKRTILSAVTAGIRNNWMSAIKRTAAMSL  146 (160)
Q Consensus       110 ~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~  146 (160)
                      +|+|++++ |+|+|+|+|++|+++||++|+++|....
T Consensus       100 ~F~I~t~~-rt~~l~A~s~eE~~~WI~aL~~~i~~~~  135 (169)
T d1btka_         100 PFQVVYDE-GPLYVFSPTEELRKRWIHQLKNVIRYNS  135 (169)
T ss_dssp             EEEEEETT-CCEEEEESCHHHHHHHHHHHHHHHTTCS
T ss_pred             ceEEEeCC-cEEEEECCCHHHHHHHHHHHHHHHHhCc
Confidence            99999986 8999999999999999999999998443

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.9e-20  Score=118.66  Aligned_cols=81  Identities=23%  Similarity=0.490  Sum_probs=61.6

Q ss_pred             eeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC-CCCCceEEEEeCCC-cEEEEEcCCHHHHHH
Q psy8929          56 GFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP-VARNFGFQITTWDS-KRTILSAVTAGIRNN  133 (160)
Q Consensus        56 g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~-~~~~~~F~i~t~~~-r~~~l~a~s~~e~~~  133 (160)
                      |...+.|++|||||+++.|+||++.+...    .+.|+|.+|. |...+ ..++++|+|+++++ ++|+|+|+|++|+.+
T Consensus        18 g~~~k~W~kRwfvL~~~~L~y~~~~~~~~----~~~i~l~~~~-v~~~~~~~~~~~f~i~~~~~~~~~~l~A~s~~e~~~   92 (101)
T d2elba2          18 GLVSSTWDRQFYFTQGGNLMSQARGDVAG----GLAMDIDNCS-VMAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEE   92 (101)
T ss_dssp             C----CCCEEEEEEETTEEEEECTTCCCE--------EEEECC-CCCCCCCCSSSSSEECCCSSSCCCCEECSSHHHHHH
T ss_pred             CCCccccEEEEEEEeCCEEEEEccCCccc----ceEEEecccc-cccccccCCcceEEEEeecccceEEEECCCHHHHHH
Confidence            55678899999999999999998776543    5889998887 44443 36789999998654 699999999999999


Q ss_pred             HHHHHHHH
Q psy8929         134 WMSAIKRT  141 (160)
Q Consensus       134 Wi~al~~~  141 (160)
                      ||.||+.+
T Consensus        93 Wi~al~~v  100 (101)
T d2elba2          93 WICTINNI  100 (101)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999975

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.7e-19  Score=117.09  Aligned_cols=86  Identities=22%  Similarity=0.392  Sum_probs=72.3

Q ss_pred             ceeeeeeeceEEEEEEeC--CEEEEEeCCCCccCCccceeEEcCCceeeeecCC--------CCCceEEEEeCCCcEEEE
Q psy8929          54 NFGFQITTWTKHWFVLRG--CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--------ARNFGFQITTWDSKRTIL  123 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~--~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--------~~~~~F~i~t~~~r~~~l  123 (160)
                      |+|...+.|++|||||+.  +.|+||+++.+..+   .|.|+|.++..+.....        ...+.|.+.+++ ++|+|
T Consensus        16 k~~~~~k~WkkR~fvL~~~~~~L~~~~~~~~~~p---~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   91 (117)
T d1v5ua_          16 KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTEC---KGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR-RVYNF   91 (117)
T ss_dssp             ECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSC---CCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESS-CEEEE
T ss_pred             EECCCCCCceEEEEEEeCCCCEEEecccccccCc---ceEEEecceEEEeecccccccccccccceEEEeeCCC-cEEEE
Confidence            445567899999999964  68999999998887   89999999987665322        245788888875 89999


Q ss_pred             EcCCHHHHHHHHHHHHHHhc
Q psy8929         124 SAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       124 ~a~s~~e~~~Wi~al~~~~~  143 (160)
                      +|+|++|+++||.+|+.++.
T Consensus        92 ~a~s~~e~~~Wv~~l~~ai~  111 (117)
T d1v5ua_          92 CAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             ECSSHHHHHHHHHHHHTTCC
T ss_pred             EeCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999885

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-18  Score=115.61  Aligned_cols=88  Identities=24%  Similarity=0.443  Sum_probs=73.6

Q ss_pred             cceeeeeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC---CCCceEEEEeCC-------CcEEE
Q psy8929          53 RNFGFQITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---ARNFGFQITTWD-------SKRTI  122 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~~-------~r~~~  122 (160)
                      .|+|...+.|++|||+|+++.|+||+++.+..+   .+.|+|..+..+.....   ..+++|+|.++.       .++|+
T Consensus        15 ~K~~~~~k~WkkR~fvL~~~~l~y~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~   91 (118)
T d1v89a_          15 KKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKP---QGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYV   91 (118)
T ss_dssp             EEECSSSSCEEEEEEEEETTEEEEESSSSCCSC---SEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEE
T ss_pred             EEECCCCCCcEEEEEEEECCEEEEecccCcccc---cceeccCceEEEEeccccccCCCcEEEEecCCCcceecCCcEEE
Confidence            345566789999999999999999999988877   89999999885443222   567999998654       26799


Q ss_pred             EEcCCHHHHHHHHHHHHHHhc
Q psy8929         123 LSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       123 l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      |+|++++|+++||.||++|+.
T Consensus        92 ~~a~s~ee~~~Wi~aI~~a~~  112 (118)
T d1v89a_          92 LMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             EECSSHHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHHc
Confidence            999999999999999999976

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.4e-18  Score=111.17  Aligned_cols=87  Identities=28%  Similarity=0.383  Sum_probs=69.1

Q ss_pred             ceeeeeeeceEEEEEEeCC--EEEEEeCCCCccCCccceeEEcCCceeeeecCC------CCCceEEEEeCCCcEEEEEc
Q psy8929          54 NFGFQITTWTKHWFVLRGC--SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV------ARNFGFQITTWDSKRTILSA  125 (160)
Q Consensus        54 k~g~~~~~WkkrwfvL~~~--~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~------~~~~~F~i~t~~~r~~~l~a  125 (160)
                      +.+...++|++|||||.++  .|+||+++.+..+   .|.|++.++..+.....      ...++|.|.+++++.|+|+|
T Consensus        10 k~~~~~k~WkkR~fvL~~~~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   86 (104)
T d2i5fa1          10 KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQA   86 (104)
T ss_dssp             EECTTTCCEEEEEEEEETTTTEEEEECTTSCSSC---SEEEECTTCEEEEECC--------CCSEEEEECTTCCEEEEEC
T ss_pred             EECCCCCCcEEEEEEEECCeeEEEEEcCccccCc---cceEeecceEEEEeccCcccccccCccEEEEECCCCeEEEEEc
Confidence            3344567899999999985  4556666666665   89999999986554322      46789999998889999999


Q ss_pred             CCHHHHHHHHHHHHHHhc
Q psy8929         126 VTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       126 ~s~~e~~~Wi~al~~~~~  143 (160)
                      +|++|+.+||+||+.|+.
T Consensus        87 ~s~~e~~~W~~ai~~a~r  104 (104)
T d2i5fa1          87 ATPKERTEWIKAIQMASR  104 (104)
T ss_dssp             SSHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            999999999999999874

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-18  Score=116.27  Aligned_cols=88  Identities=18%  Similarity=0.201  Sum_probs=64.6

Q ss_pred             eeeeceEEEEEEeCCE--EEEEeCCCCccCCccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          58 QITTWTKHWFVLRGCS--LLYYRDPKAEESGVLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~--L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      ..+.|++|||||.++.  ++||.++.+... .+.|.|+|..+..+.....    .+.+.|.|.++ +++|+|+|+|++|+
T Consensus        21 ~~k~WkkRwfvL~~~~~~~yy~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~~~f~A~s~~e~   98 (126)
T d1wi1a_          21 VWKRWKKRFFVLVQVSQYTFAMCSYREKKA-EPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE-GDTVIFASDDEQDR   98 (126)
T ss_dssp             SCCSCEEEEEEEEEEETTEEEEEECCSSSS-CCSEEEECSSCEEEECCCCSSCCSCSSEEEEECS-SCEEEEECSSHHHH
T ss_pred             CCCCceEEEEEEeCCceEEEEEcccccccc-cceeeeeeceeeeeeccccccccccceeEEeccC-CeEEEEEECCHHHH
Confidence            4578999999998653  455554444322 2389999999885443222    34566777776 59999999999999


Q ss_pred             HHHHHHHHHHhcccCC
Q psy8929         132 NNWMSAIKRTAAMSLL  147 (160)
Q Consensus       132 ~~Wi~al~~~~~~~~~  147 (160)
                      ++||++|++|+.....
T Consensus        99 ~~Wv~al~~a~~~~~~  114 (126)
T d1wi1a_          99 ILWVQAMYRATGQSHK  114 (126)
T ss_dssp             HHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHhhcC
Confidence            9999999999874443

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.5e-19  Score=121.80  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCCCCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIKR  140 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~~  140 (160)
                      .|++|||||+++.|.||+++....+   .|.|+|+.+..++..   .+++|.|++++ |+|+|+|++ .|+.+||.||+.
T Consensus        61 ~wkkR~FvL~~~~L~YYkd~~~~~~---kG~I~L~~~~~v~~~---~~~~F~I~t~~-Rty~l~a~~-~d~~~Wv~aI~~  132 (147)
T d1w1ha_          61 FARRRQLLLTEGPHLYYVDPVNKVL---KGEIPWSQELRPEAK---NFKTFFVHTPN-RTYYLMDPS-GNAHKWCRKIQE  132 (147)
T ss_dssp             SCEEEEEEEETTTEEEEEETTTTEE---EEEECCCTTCEEEEE---ETTEEEEECSS-CEEEEECTT-SCHHHHHHHHHH
T ss_pred             cceEEEEEEcCCeeEEEeCCCcccc---cceEEeccccccccc---cCceEEEecCc-eEEEEEcCh-HHHHHHHHHHHH
Confidence            7999999999999999999988766   899999998866543   56899999986 999999865 689999999999


Q ss_pred             Hhcc
Q psy8929         141 TAAM  144 (160)
Q Consensus       141 ~~~~  144 (160)
                      +++.
T Consensus       133 v~~~  136 (147)
T d1w1ha_         133 VWRQ  136 (147)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8873

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.9e-18  Score=111.08  Aligned_cols=81  Identities=20%  Similarity=0.329  Sum_probs=66.5

Q ss_pred             eeceEEEEEEeCC-------EEEEEeCCCCc--cCCccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHH
Q psy8929          60 TTWTKHWFVLRGC-------SLLYYRDPKAE--ESGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAG  129 (160)
Q Consensus        60 ~~WkkrwfvL~~~-------~L~yyk~~~~~--~~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~  129 (160)
                      ++|++|||||.+.       .|+||+++.+.  ....+.|.|+|..|..+..... ..+++|+|.+++ ++|+|+|+|++
T Consensus        12 k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~t~~-r~~~l~A~s~~   90 (103)
T d1qqga1          12 KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALYTRD-EHFAIAADSEA   90 (103)
T ss_dssp             TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEEESS-CEEEEECSSHH
T ss_pred             CCCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeecccCCCceEEEEEeCC-eEEEEEcCCHH
Confidence            6899999999874       59999986542  1123479999999987666544 568999999986 89999999999


Q ss_pred             HHHHHHHHHHHH
Q psy8929         130 IRNNWMSAIKRT  141 (160)
Q Consensus       130 e~~~Wi~al~~~  141 (160)
                      |+++||+||++.
T Consensus        91 e~~~Wi~al~~l  102 (103)
T d1qqga1          91 EQDSWYQALLQL  102 (103)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999999873

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.4e-18  Score=114.62  Aligned_cols=86  Identities=20%  Similarity=0.330  Sum_probs=67.4

Q ss_pred             eeeeeceEEEEEEe--CCEEEEEeCCCCccCC--ccceeEEcCCceeeeecCC----CCCceEEEEeCCCcEEEEEcCCH
Q psy8929          57 FQITTWTKHWFVLR--GCSLLYYRDPKAEESG--VLDGVVALNNVTSLSEVPV----ARNFGFQITTWDSKRTILSAVTA  128 (160)
Q Consensus        57 ~~~~~WkkrwfvL~--~~~L~yyk~~~~~~~~--~~~g~I~L~~~~~v~~~~~----~~~~~F~i~t~~~r~~~l~a~s~  128 (160)
                      ...+.|++|||||.  ++.|+||+++.+..+.  .+++.|+|..+..+.....    ...++|.|.+++ +.|+|+|+|+
T Consensus        27 ~~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~l~Aes~  105 (126)
T d1v5pa_          27 ENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALS-QRYFLQANDQ  105 (126)
T ss_dssp             TCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEECSS-CEEEEECSSH
T ss_pred             CCCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccceEEEcCCC-eeEEEECCCH
Confidence            35678999999995  6899999998775541  2256677777665544332    456899999975 9999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy8929         129 GIRNNWMSAIKRTAA  143 (160)
Q Consensus       129 ~e~~~Wi~al~~~~~  143 (160)
                      +|+++||+||++|+.
T Consensus       106 ~e~~~Wi~aL~~A~~  120 (126)
T d1v5pa_         106 KDLKDWVEALNQASK  120 (126)
T ss_dssp             HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999874

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.75  E-value=3e-18  Score=111.41  Aligned_cols=83  Identities=17%  Similarity=0.316  Sum_probs=68.0

Q ss_pred             eeeceEEEEEEeCCEEEEEeCCCCcc---CCccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHHHHHHH
Q psy8929          59 ITTWTKHWFVLRGCSLLYYRDPKAEE---SGVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAGIRNNW  134 (160)
Q Consensus        59 ~~~WkkrwfvL~~~~L~yyk~~~~~~---~~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~e~~~W  134 (160)
                      .+.|++|||||+++.|+||+++.+..   ...+.+.|+|.++........ .++++|.|.++++++|+|+|+|++|+++|
T Consensus        20 ~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W   99 (106)
T d1btna_          20 SRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTW   99 (106)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTSCEEEEECSSHHHHHHH
T ss_pred             CCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceeeeccccccCcceEeecccCCCEEEEECCCHHHHHHH
Confidence            46799999999999999999876522   122368899999875443332 57899999999889999999999999999


Q ss_pred             HHHHHHH
Q psy8929         135 MSAIKRT  141 (160)
Q Consensus       135 i~al~~~  141 (160)
                      |++|+.|
T Consensus       100 ~~ai~~A  106 (106)
T d1btna_         100 IQAISSA  106 (106)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9999875

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.73  E-value=1.2e-17  Score=111.19  Aligned_cols=87  Identities=22%  Similarity=0.319  Sum_probs=68.0

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccC---CccceeEEcCCceeeeecC-CCCCceEEEEeCCCcEEEEEcCCHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEES---GVLDGVVALNNVTSLSEVP-VARNFGFQITTWDSKRTILSAVTAGIRNN  133 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~---~~~~g~I~L~~~~~v~~~~-~~~~~~F~i~t~~~r~~~l~a~s~~e~~~  133 (160)
                      ..+.|++|||||+++.|+||+++.+..+   ..+.+.+++..+....... ..++++|.|.+.++++|+|+|+|++|+++
T Consensus        28 ~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~~e~~~  107 (123)
T d1wjma_          28 ANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSS  107 (123)
T ss_dssp             SCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEEEEECSSSCEEEEECSSHHHHHH
T ss_pred             CCCCCcEEEEEEECCEEEEEecchhccccccccccccccccceeEEecccccccCcEEEEEcCCCcEEEEECCCHHHHHH
Confidence            3468999999999999999997655332   1124566777766333222 25789999999888999999999999999


Q ss_pred             HHHHHHHHhcc
Q psy8929         134 WMSAIKRTAAM  144 (160)
Q Consensus       134 Wi~al~~~~~~  144 (160)
                      ||++|+.++..
T Consensus       108 Wi~aI~~a~~~  118 (123)
T d1wjma_         108 WLRVVNAAIAS  118 (123)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999873

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.7e-18  Score=110.76  Aligned_cols=86  Identities=23%  Similarity=0.348  Sum_probs=64.3

Q ss_pred             cceeeeeeeceEEEEEEeCCE--EEEEeCC-CCccCCccceeEEcCCceeeeecCC---------CCCceEEEEeCCCcE
Q psy8929          53 RNFGFQITTWTKHWFVLRGCS--LLYYRDP-KAEESGVLDGVVALNNVTSLSEVPV---------ARNFGFQITTWDSKR  120 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~~~--L~yyk~~-~~~~~~~~~g~I~L~~~~~v~~~~~---------~~~~~F~i~t~~~r~  120 (160)
                      .|+|...+.|++|||+|.+..  ++||..+ ....+   .|.|+|.++..+.....         ...++|.|++++++.
T Consensus        18 ~K~~~~~k~WkkR~fvL~~~~~~~~~~~~~~~~~~p---~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~   94 (116)
T d1x1ga1          18 AKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRP---VGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTH   94 (116)
T ss_dssp             EEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSC---SCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCC
T ss_pred             EEEcCCCCCCceEEEEEECCCcEEEEeccccccccc---eeEEEcCCCEEEEecccCcccccccccccceeEEEeCCCeE
Confidence            344566789999999998754  4444333 22333   89999999874322111         356899999988889


Q ss_pred             EEEEcCCHHHHHHHHHHHHHH
Q psy8929         121 TILSAVTAGIRNNWMSAIKRT  141 (160)
Q Consensus       121 ~~l~a~s~~e~~~Wi~al~~~  141 (160)
                      |+|+|+|++|+++||.||+++
T Consensus        95 ~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          95 YYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             EEECCSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHhh
Confidence            999999999999999999985

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=9.6e-18  Score=111.76  Aligned_cols=87  Identities=14%  Similarity=0.248  Sum_probs=66.7

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCC-----ccceeEEcCCceeeeecC-CCCCceEEEEeCCCcEEEEEcCCHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESG-----VLDGVVALNNVTSLSEVP-VARNFGFQITTWDSKRTILSAVTAGIR  131 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~-----~~~g~I~L~~~~~v~~~~-~~~~~~F~i~t~~~r~~~l~a~s~~e~  131 (160)
                      ..++|++|||||+++.|+||+++.+..+.     ...+.|.+..+......+ ..++++|.|.++++++|+|+|+|++|+
T Consensus        28 ~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~a~s~~d~  107 (122)
T d1droa_          28 SNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEM  107 (122)
T ss_dssp             CCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTTEEEEECSSSCEEEEECSSSHHH
T ss_pred             CCCCceEEEEEEeCCEEEEEcCcccccccCcccccccceEeccceEEEeccccccccceEEEECCCCcEEEEECCCHHHH
Confidence            34579999999999999999988764331     113455555555322222 257899999999888999999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy8929         132 NNWMSAIKRTAAM  144 (160)
Q Consensus       132 ~~Wi~al~~~~~~  144 (160)
                      +.||.||+.++..
T Consensus       108 ~~Wv~al~~~~~~  120 (122)
T d1droa_         108 SQWVTSLKAQSDS  120 (122)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998863

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-17  Score=109.35  Aligned_cols=88  Identities=22%  Similarity=0.360  Sum_probs=66.3

Q ss_pred             cceeeeeeeceEEEEEEeC-CEEEEEeCCCCccCCccceeEEcCCceeee----ecCCCCCceEEEEeCCC---cEEEEE
Q psy8929          53 RNFGFQITTWTKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSLS----EVPVARNFGFQITTWDS---KRTILS  124 (160)
Q Consensus        53 kk~g~~~~~WkkrwfvL~~-~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~----~~~~~~~~~F~i~t~~~---r~~~l~  124 (160)
                      .|.|...+.|++|||||.+ +.|+||+++.+..+   .|.|+|..+..+.    .....++++|.|.+.++   +.++|+
T Consensus        14 ~K~~~~~k~Wk~RwfvL~~~~~l~~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~f~   90 (118)
T d1unqa_          14 HKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVD---QREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFH   90 (118)
T ss_dssp             EEECSSSCCEEEEEEEEETTSEEEEESSCCCSHH---HHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCCCcEEEEEEEeccceeEEEeeccCccc---cccccccceEEeecccccccccCCceEEEEeccccceeEEEEE
Confidence            3456667899999999986 68888988777654   5666666554321    11235789999986432   468999


Q ss_pred             cCCHHHHHHHHHHHHHHhc
Q psy8929         125 AVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       125 a~s~~e~~~Wi~al~~~~~  143 (160)
                      |+|++|+++||.||+.++.
T Consensus        91 a~s~~e~~~Wi~ai~~~~~  109 (118)
T d1unqa_          91 VETPEEREEWTTAIQTVAD  109 (118)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999886

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=4.2e-12  Score=85.45  Aligned_cols=85  Identities=13%  Similarity=0.245  Sum_probs=68.6

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWM  135 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi  135 (160)
                      ..+.|+.|||+|-+..|.|++.......-...+.|+|.++. |...+.  ..+++|.|..+..+.|.|+|.|++|+++||
T Consensus        40 ~~~~~k~R~~fLF~~~Ll~~k~~~~~~~~~~k~~i~l~~~~-v~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~eek~~Wv  118 (132)
T d1v61a_          40 ACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMV-VNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWM  118 (132)
T ss_dssp             SSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCB-CSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHH
T ss_pred             cCCCcceEEEEEeCCEEEEEEEcCCCceeEEeeecchhhcc-ccccccccCccceEEEeCCCCCEEEEEcCCHHHHHHHH
Confidence            34689999999999999999965443322336889999998 444333  567899999876689999999999999999


Q ss_pred             HHHHHHhc
Q psy8929         136 SAIKRTAA  143 (160)
Q Consensus       136 ~al~~~~~  143 (160)
                      ++|++++.
T Consensus       119 ~~L~~~i~  126 (132)
T d1v61a_         119 EQLNRLTK  126 (132)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99999885

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.9e-12  Score=82.63  Aligned_cols=75  Identities=8%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             CCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      ++-++||||||||++..|.||+++.+.++   .|.|+|..+..+..........  ...-.-.|.|.++...+|...+..
T Consensus        12 ~~~~~wkkRwFvL~~~~L~YYk~~~~~~p---~g~I~L~~~~~v~~~~~~~~~~--~~~~~~~F~I~T~~rtyy~~~~~~   86 (112)
T d2coaa1          12 NKDTLRKRHYWRLDCKCITLFQNNTTNRY---YKEIPLSEILTVESAQNFSLVP--PGTNPHCFEIVTANATYFVGEMPG   86 (112)
T ss_dssp             SSSCCCEEEEEEECSSEEEEESSSSCSSC---SEEEETTTCCEEEESCCCSSSC--TTSCCEEEEEECSSCCCCEECCSC
T ss_pred             CCCCCeeEEEEEEEcceEEEEeccCCCcc---ceEEeeeccccccccccccccc--cCCCccEEEEEeCCeEEEEecCCc
Confidence            45678999999999999999999988766   7999999988766544321100  000011344556666666655443

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.1e-11  Score=82.21  Aligned_cols=80  Identities=16%  Similarity=0.266  Sum_probs=53.4

Q ss_pred             CCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      ...+.|+||||||+++.|.||+++.+..+   .|.|+|..+..+.......+..       ..|.+..+..-+++..++.
T Consensus        22 ~~~k~WkkrwfvL~~~~L~yY~~~~d~~~---~~~i~L~~~~~~~~~~~~~~~~-------~~F~i~~~~~~~~f~Aes~   91 (136)
T d1x1fa1          22 SGYREYEHYWTELRGTTLFFYTDKKSIIY---VDKLDIVDLTCLTEQNSTEKNC-------AKFTLVLPKEEVQLKTENT   91 (136)
T ss_dssp             TTCCSCEEEEEEEETTEEEEESCSSCSSC---SEECCCSSCCEEEECCCTTSCC-------CEEEEECSSCCEEEECSSH
T ss_pred             CCCCCeEEEEEEEcCCEeEEEeecccccc---cccccccceeeeeeeccccccc-------ceeeecCCCceEEEEeCCH
Confidence            34568999999999999999999877665   7999999887665443333221       2444555555455666655


Q ss_pred             ccCCccceeE
Q psy8929          83 EESGVLDGVV   92 (160)
Q Consensus        83 ~~~~~~~g~I   92 (160)
                      .+...|...|
T Consensus        92 ~e~~~Wi~~I  101 (136)
T d1x1fa1          92 ESGEEWRGFI  101 (136)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5544454443

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3e-10  Score=72.22  Aligned_cols=67  Identities=18%  Similarity=0.327  Sum_probs=46.6

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccc-cceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVA-RNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~-kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      ..++|++|||||+++.|.||+++.+..+   .|.|+|..|..+...... +...         |-+.+++.-+++..++.
T Consensus        16 ~~k~Wk~R~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~~v~~~~~~~~~~~---------F~i~~~~r~~~l~a~s~   83 (100)
T d1faoa_          16 LVKTWKTRWFTLHRNELKYFKDQMSPEP---IRILDLTECSAVQFDYSQERVNC---------FCLVFPFRTFYLCAKTG   83 (100)
T ss_dssp             SSCCEEEEEEEEETTEEEEESSTTCSSC---SEEEEGGGCCEEEEECSSSSSSE---------EEEEETTEEEEEECSSH
T ss_pred             CCCCceEEEEEEECCEEEEEeccCCccC---ceEEechheEEEEeccccccccc---------cccccCCeEEEEEeCCH
Confidence            4678999999999999999999887666   799999997765543332 2222         33445555555554444

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.5e-10  Score=76.76  Aligned_cols=40  Identities=35%  Similarity=0.580  Sum_probs=34.4

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++||||||||+++.|+||+++.+..+   .|.|+|..+....
T Consensus        20 ~k~WkkRwfvL~~~~L~yyk~~~~~~~---~g~i~L~~~~v~~   59 (130)
T d1v88a_          20 LKSWTKLWCVLKPGVLLIYKTQKNGQW---VGTVLLNACEIIE   59 (130)
T ss_dssp             SSSCEEEEEEEETTEEEEESCSSSCCC---CEEEECSSCEECC
T ss_pred             CCCceEEEEEEeCCEEEEEcCCCCCcc---eeEEECCCeEEEE
Confidence            478999999999999999999977666   7999999876433

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=7.5e-10  Score=72.68  Aligned_cols=82  Identities=12%  Similarity=0.308  Sum_probs=59.5

Q ss_pred             eec-eEEEEEEeC-CEEEEEeCCCCccCCccceeEEcCCceeeeecCC-----------CCCceEEEEeC-CCcEEEEEc
Q psy8929          60 TTW-TKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----------ARNFGFQITTW-DSKRTILSA  125 (160)
Q Consensus        60 ~~W-kkrwfvL~~-~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-----------~~~~~F~i~t~-~~r~~~l~a  125 (160)
                      ++| ++|||+|.. ..+.+|.+..+... ...+.|+|..+..|.....           ....+|.|+.. +.++++|.|
T Consensus        23 ~~~~k~R~f~L~~d~~~i~~~~~~~~~~-~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~~~~r~l~l~a  101 (119)
T d1maia_          23 SSWRRERFYKLQEDCKTIWQESRKVMRS-PESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIA  101 (119)
T ss_dssp             SSCEEEEEEEECTTSSEEEECCCCTTCC-TTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEEC
T ss_pred             CCCCEEEEEEEcCCCCEEEEeCCCCCCC-ccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEcCCCcEEEEEE
Confidence            345 569999976 45556665544221 1258999999988766432           23478999843 247999999


Q ss_pred             CCHHHHHHHHHHHHHHh
Q psy8929         126 VTAGIRNNWMSAIKRTA  142 (160)
Q Consensus       126 ~s~~e~~~Wi~al~~~~  142 (160)
                      +|++|++.||.+|+..+
T Consensus       102 ~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_         102 PSPADAQHWVQGLRKII  118 (119)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999999865

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.5e-09  Score=68.36  Aligned_cols=43  Identities=12%  Similarity=0.203  Sum_probs=34.7

Q ss_pred             CCCCCceEEEEEEeCC---eEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           3 NKKHTWTKHWFVLRGC---SLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~---~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      ++.+.|+||||||+++   .|+||+++.+..+   .|.|++..+..+..
T Consensus        11 ~~~k~W~krwfvL~~~~~~~ly~~~~~~~~~~---~~~i~l~~~~~~~~   56 (99)
T d2coca1          11 ESGETWSEVWAAIPMSDPQVLHLQGGSQDGRL---PRTIPLPSCKLSVP   56 (99)
T ss_dssp             SSSSCEEEEEEECCTTCTTCEEEECCTTCSSS---CSEECGGGCEEECC
T ss_pred             CCCCCccEEEEEEecCCccEEEEECcCccccc---cccccccceeeeec
Confidence            3467999999999976   4889998877666   89999998765443

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=8.9e-10  Score=72.36  Aligned_cols=44  Identities=25%  Similarity=0.667  Sum_probs=36.0

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccc
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP   50 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~   50 (160)
                      ..++||||||||+++.|+||+++.+..+   .|.|+|..+.......
T Consensus        17 ~~k~WkrR~fvL~~~~L~yy~~~~~~~~---~g~i~L~~~~v~~~~~   60 (127)
T d1fgya_          17 RVKTWKRRWFILTDNCLYYFEYTTDKEP---RGIIPLENLSIREVLD   60 (127)
T ss_dssp             SSCCEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEEECC
T ss_pred             CCCCcEEEEEEEECCEEEEEccCCCccc---cceEeCCCeEEEEccC
Confidence            3578999999999999999998877666   7999999876544333

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.9e-10  Score=75.73  Aligned_cols=62  Identities=21%  Similarity=0.271  Sum_probs=45.5

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCC
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPK   81 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~   81 (160)
                      .+.||||||||+++.|+||+++.+..+   .|.|+|+.+..+..   ..         ...|.+.+++..+++.+..
T Consensus        59 ~~~wkkR~FvL~~~~L~YYkd~~~~~~---kG~I~L~~~~~v~~---~~---------~~~F~I~t~~Rty~l~a~~  120 (147)
T d1w1ha_          59 GLFARRRQLLLTEGPHLYYVDPVNKVL---KGEIPWSQELRPEA---KN---------FKTFFVHTPNRTYYLMDPS  120 (147)
T ss_dssp             TTSCEEEEEEEETTTEEEEEETTTTEE---EEEECCCTTCEEEE---EE---------TTEEEEECSSCEEEEECTT
T ss_pred             CCcceEEEEEEcCCeeEEEeCCCcccc---cceEEecccccccc---cc---------CceEEEecCceEEEEEcCh
Confidence            457999999999999999999877655   89999998765421   11         1246677777777776543

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.2e-09  Score=67.31  Aligned_cols=41  Identities=20%  Similarity=0.497  Sum_probs=32.1

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .+.|+||||||+++.|+||+++.+..  ...|.|+|..+..+.
T Consensus        12 ~~~WkkR~fvL~~~~L~yyk~~~~~~--~~~~~i~l~~~~v~~   52 (95)
T d2cofa1          12 NSQWKSRWCSVRDNHLHFYQDRNRSK--VAQQPLSLVGCEVVP   52 (95)
T ss_dssp             TTEEEEEEEEECSSCEEEECSSTTCS--EEEEEECTTTCEEEC
T ss_pred             CCCceEEEEEEECCEEEEEecccccc--cccccccccceEEEe
Confidence            35699999999999999999875432  236899999876543

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.6e-09  Score=70.09  Aligned_cols=37  Identities=27%  Similarity=0.547  Sum_probs=31.8

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      .++||||||||+++.|+||+++.+..+   .|.|+|..+.
T Consensus        18 ~~~WkkRwFvL~~~~L~yyk~~~~~~~---~~~i~l~~~~   54 (111)
T d2dyna_          18 KGGSKEYWFVLTAENLSWYKDDEEKEK---KYMLSVDNLK   54 (111)
T ss_dssp             TTSSEEEEEEEESSEEEEESSTTCCCE---EEEEECTTEE
T ss_pred             cCCceEEEEEEECCEEEEEcchhhccc---ccccccccce
Confidence            356999999999999999999877665   7999998753

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.4e-09  Score=70.19  Aligned_cols=73  Identities=16%  Similarity=0.235  Sum_probs=48.4

Q ss_pred             CCCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEe-CCEEEEEeCCC
Q psy8929           3 NKKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLR-GCSLLYYRDPK   81 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~-~~~L~yyk~~~   81 (160)
                      +..++|++|||||+++.|+||+++.+..+   .+.|+|..+..+...+...+..       ..+++.. ++.-+++..++
T Consensus        16 ~~~k~WkkryfvL~~~~L~~y~~~~~~~p---~~~i~l~~~~~~~~~~~~~~~~-------~~f~l~~~~~~~~~~~a~s   85 (113)
T d1plsa_          16 SVFNTWKPMWVVLLEDGIEFYKKKSDNSP---KGMIPLKGSTLTSPCQDFGKRM-------FVFKITTTKQQDHFFQAAF   85 (113)
T ss_dssp             SSSSCCEEEEEEEETTEEEEESSTTCSSC---SEEEESSSCCEESSCCSSCCSS-------SEEEEEETTTEEEEEECSS
T ss_pred             CCCCCceEEEEEEECCEEEEEecCCcccc---ceEEECccCeEEeeecccCCcc-------eEEEEecCCCeEEEEECCC
Confidence            34678999999999999999998877666   7999999986655443322111       1223333 45555666655


Q ss_pred             CccC
Q psy8929          82 AEES   85 (160)
Q Consensus        82 ~~~~   85 (160)
                      +.+.
T Consensus        86 ~~e~   89 (113)
T d1plsa_          86 LEER   89 (113)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.7e-09  Score=66.69  Aligned_cols=40  Identities=28%  Similarity=0.643  Sum_probs=34.3

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++|+||||||+++.|.||+++.+..+   .|.|+|..+..+.
T Consensus        15 ~~~W~kr~fvL~~~~L~~~~~~~~~~~---~~~i~L~~~~~~~   54 (102)
T d2coda1          15 KRMFQKRWVKFDGLSISYYNNEKEMYS---KGIIPLSAISTVR   54 (102)
T ss_dssp             SSCCEEEEEEECSSEEEEEESSCCSSC---CCEEETTTEEEEE
T ss_pred             CCCceEEEEEEECCEEEEEeccCccee---EEEEEchhceeec
Confidence            467999999999999999999877665   7999999876543

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=9.5e-09  Score=65.76  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=33.9

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      ..+.|+||||||+++.|+||+++.+...   .+.|+|..+....
T Consensus        20 ~~~~W~kr~~vL~~~~L~~~k~~~~~~~---~~~i~l~~~~~~~   60 (109)
T d1wgqa_          20 SKKPWKHLWFVIKNKVLYTYAASEDVAA---LESQPLLGFTVTL   60 (109)
T ss_dssp             TTSCCEEEEEEEETTEEEEESCTTCSSC---SEEEECSSEEEEE
T ss_pred             CCCCceEEEEEEeCCEEEEecccccccc---ccccccceeeeee
Confidence            3568999999999999999999877665   6889998865444

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.5e-09  Score=71.51  Aligned_cols=76  Identities=12%  Similarity=0.202  Sum_probs=41.9

Q ss_pred             CCCCceEEEEEEe--CCeEEEeeCCCcccC--CcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeC
Q psy8929           4 KKHTWTKHWFVLR--GCSLLYYRDPKAEES--GVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRD   79 (160)
Q Consensus         4 ~~~~Wkkrwfvl~--~~~L~yy~~~~~~~~--~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~   79 (160)
                      ..+.|+||||||.  ++.|+||++..+..+  ....+.|++..+..+.........+     ....+.+.++...+|+..
T Consensus        28 ~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~r~~~l~A  102 (126)
T d1v5pa_          28 NSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPK-----TPFCFVINALSQRYFLQA  102 (126)
T ss_dssp             CSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCS-----CSSEEEEECSSCEEEEEC
T ss_pred             CCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeecccccccccccc-----ccceEEEcCCCeeEEEEC
Confidence            3578999999994  789999998866544  1223455555544333222111111     111233445566666665


Q ss_pred             CCCcc
Q psy8929          80 PKAEE   84 (160)
Q Consensus        80 ~~~~~   84 (160)
                      +...+
T Consensus       103 es~~e  107 (126)
T d1v5pa_         103 NDQKD  107 (126)
T ss_dssp             SSHHH
T ss_pred             CCHHH
Confidence            55443

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=3.2e-09  Score=67.28  Aligned_cols=40  Identities=23%  Similarity=0.511  Sum_probs=33.7

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++|++|||||+++.|+||+++.+..+   .|.|+|..+....
T Consensus        14 ~k~W~kR~fvL~~~~L~yy~~~~~~~~---~~~i~l~~~~v~~   53 (101)
T d2fjla1          14 NHEWYPHYFVLTSSKIYYSEETSSDLL---RGVLDVPACQIAI   53 (101)
T ss_dssp             TTEEEEEEEEEETTEEEECCCCSCTCC---CEEECSTTCEEEE
T ss_pred             CCCCeEEEEEEECCEEEEEecccccee---cceEEcCCceeEe
Confidence            578999999999999999998776555   7999999876543

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=5.7e-08  Score=62.36  Aligned_cols=79  Identities=15%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             eEEEEEEeCCEEEEEeCCCCcc-CCccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHHHHHHHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEE-SGVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRNNWMSAIK  139 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~-~~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~~Wi~al~  139 (160)
                      ++|++.|=...|.+.+...... .=.....|+|..+.. ..+++  ..+++|.|.++. +.|.|+|+|++|...||++|+
T Consensus        22 ~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v-~~~~d~~~~~n~f~i~~~~-~~~~~~a~s~~eK~~W~~~l~   99 (109)
T d1zc3b1          22 QRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAV-VNVKDNPPMKDMFKLLMFP-ESRIFQAENAKIKREWLEVLE   99 (109)
T ss_dssp             EEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEE-EEECCBTTBSSEEEEEETT-EEEEEECSSHHHHHHHHHHHH
T ss_pred             eeEEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEE-EEeecccccceEEEEccCC-CEEEEEECCHHHHHHHHHHHH
Confidence            4578888888888776332211 112357899999884 44433  467899999986 799999999999999999999


Q ss_pred             HHhc
Q psy8929         140 RTAA  143 (160)
Q Consensus       140 ~~~~  143 (160)
                      .|+.
T Consensus       100 ~a~~  103 (109)
T d1zc3b1         100 ETKR  103 (109)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9876

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.9e-09  Score=73.90  Aligned_cols=42  Identities=21%  Similarity=0.378  Sum_probs=33.5

Q ss_pred             CceEEEEEEeCCeEEEeeCCCccc-CCcccceeecccceeecc
Q psy8929           7 TWTKHWFVLRGCSLLYYRDPKAEE-SGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         7 ~Wkkrwfvl~~~~L~yy~~~~~~~-~~~l~g~i~l~~~~~~~~   48 (160)
                      +||||||||+++.|.||+++.+.. .+.+.|.|+|..+..+..
T Consensus        23 ~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~   65 (169)
T d1btka_          23 NFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVET   65 (169)
T ss_dssp             CEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEE
T ss_pred             CceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEe
Confidence            799999999999999999876532 334469999998776654

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.4e-09  Score=65.12  Aligned_cols=44  Identities=20%  Similarity=0.460  Sum_probs=36.4

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccc
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP   50 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~   50 (160)
                      ..++|++|||||+++.|.||+++....+   .|.|+|..+..+....
T Consensus        15 ~~~~Wkkr~fvL~~~~l~yy~~~~~~~~---~~~i~l~~~~~~~~~~   58 (103)
T d1eaza_          15 VMKNWKRRYFQLDENTIGYFKSELEKEP---LRVIPLKEVHKVQECK   58 (103)
T ss_dssp             TTCCEEEEEEEECSSEEEEESSTTCSSC---SEEEEGGGCCEEEECT
T ss_pred             CCCCeeEEEEEEECCEEEEEecccCccc---ceEEEccceEEeeccc
Confidence            4568999999999999999998877665   7999999887655444

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.9e-09  Score=65.25  Aligned_cols=74  Identities=19%  Similarity=0.246  Sum_probs=46.1

Q ss_pred             CCCCCCceEEEEEEeCC-------eEEEeeCCCcc--cCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCC
Q psy8929           2 LNKKHTWTKHWFVLRGC-------SLLYYRDPKAE--ESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGC   72 (160)
Q Consensus         2 ~~~~~~Wkkrwfvl~~~-------~L~yy~~~~~~--~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~   72 (160)
                      |.|.++||||||||++.       .|.||+++.+.  ....+.|.|+|..|..+......+. .       ..+.+.+++
T Consensus         8 L~K~k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~-~-------~~f~i~t~~   79 (103)
T d1qqga1           8 LRKPKSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKN-K-------HLVALYTRD   79 (103)
T ss_dssp             EECTTTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSC-S-------SEEEEEESS
T ss_pred             EEEcCCCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeecccCCC-c-------eEEEEEeCC
Confidence            35678999999999975       49999987542  2334468999998766544332221 1       123345555


Q ss_pred             EEEEEeCCCCc
Q psy8929          73 SLLYYRDPKAE   83 (160)
Q Consensus        73 ~L~yyk~~~~~   83 (160)
                      ..+++..+++.
T Consensus        80 r~~~l~A~s~~   90 (103)
T d1qqga1          80 EHFAIAADSEA   90 (103)
T ss_dssp             CEEEEECSSHH
T ss_pred             eEEEEEcCCHH
Confidence            55565555443

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.9e-08  Score=64.41  Aligned_cols=40  Identities=23%  Similarity=0.511  Sum_probs=33.7

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++|++|||||+++.|.||+++.+..+   .|.|+|..+..+.
T Consensus        26 ~~~W~~r~~vL~~~~L~~y~~~~~~~p---~g~i~L~~~~~~~   65 (111)
T d1u5fa1          26 GFEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRM   65 (111)
T ss_dssp             SCSEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEE
T ss_pred             cCCceEEEEEEECCEEEeeccccccCc---ceEEEecccEEEe
Confidence            358999999999999999998876555   7999999876544

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=3.2e-08  Score=63.71  Aligned_cols=43  Identities=30%  Similarity=0.594  Sum_probs=34.9

Q ss_pred             CCCCceEEEEEEe--CCeEEEeeCCCcccCCcccceeecccceeeccc
Q psy8929           4 KKHTWTKHWFVLR--GCSLLYYRDPKAEESGVLDGVVALNNVTSLSEV   49 (160)
Q Consensus         4 ~~~~Wkkrwfvl~--~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~   49 (160)
                      ..+.||||||||+  ++.|+||+++.+..+   .|.|+|..+..+...
T Consensus        20 ~~k~WkkR~fvL~~~~~~L~~~~~~~~~~p---~g~i~l~~~~~v~~~   64 (117)
T d1v5ua_          20 FMKPWKARWFVLDKTKHQLRYYDHRMDTEC---KGVIDLAEVEAVAPG   64 (117)
T ss_dssp             SSSCCEEEEEEEETTTTEEEEESSSSCSSC---CCEEEGGGEEEEECC
T ss_pred             CCCCceEEEEEEeCCCCEEEecccccccCc---ceEEEecceEEEeec
Confidence            3578999999996  468999999987776   799999987765543

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=9.3e-09  Score=65.35  Aligned_cols=41  Identities=20%  Similarity=0.505  Sum_probs=34.4

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      .++|++|||||+++.|+||+++.+..+   .|.|+|..+.....
T Consensus        18 ~~~Wkkr~~vL~~~~L~y~~~~~~~~~---~~~i~l~~~~~~~~   58 (106)
T d1u5da1          18 GSEWQKRWCVVSRGLFYYYANEKSKQP---KGTFLIKGYSVRMA   58 (106)
T ss_dssp             CEEEEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEEC
T ss_pred             cCCcEEEEEEEECCEEEEEeccccccc---ccccccCCceEeec
Confidence            467999999999999999999887666   79999998765443

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.5e-08  Score=68.59  Aligned_cols=69  Identities=17%  Similarity=0.262  Sum_probs=43.3

Q ss_pred             CCceEEEEEEeCC-----eEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEe-CCEEEEEeC
Q psy8929           6 HTWTKHWFVLRGC-----SLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLR-GCSLLYYRD   79 (160)
Q Consensus         6 ~~Wkkrwfvl~~~-----~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~-~~~L~yyk~   79 (160)
                      ++||||||||++.     .|.||++....  ..+.|.|+|..|..+......+++.         |.++. ++..+++..
T Consensus        38 k~WkkR~fvL~~~~~~~~~L~yy~~~~~~--~~~~g~i~l~~~~~~~~~~~~~~~~---------F~i~~~~~~~~~l~A  106 (150)
T d1wg7a_          38 RSFKRRFFHLIQLGDGSYNLNFYKDEKIS--KEPKGSIFLDSCMGVVQNNKVRRFA---------FELKMQDKSSYLLAA  106 (150)
T ss_dssp             SSCEEEEEEEEECSSSCEEEEEESSSCCS--SCCSEEECTTTCCEECCCCSSCTTE---------EEEECSSSCEEEEEC
T ss_pred             ccceEEEEEEEcCcCCceeEEEEeccccc--cccccccccccccccccCccccceE---------EEEEcCCCeEEEEEe
Confidence            5799999999854     48888876432  2237999999987766554333322         33333 345566665


Q ss_pred             CCCccC
Q psy8929          80 PKAEES   85 (160)
Q Consensus        80 ~~~~~~   85 (160)
                      +...+.
T Consensus       107 ~s~~e~  112 (150)
T d1wg7a_         107 DSEVEM  112 (150)
T ss_dssp             SSHHHH
T ss_pred             CCHHHH
Confidence            555443

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.4e-07  Score=62.61  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=61.4

Q ss_pred             eEEEEEEeCCEEEEEeCCCCccC--C------ccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcCCHHHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEES--G------VLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAVTAGIRN  132 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~~--~------~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~s~~e~~  132 (160)
                      +.|||.|=+..|.|.+-......  +      ...+.|+|..+. |....+  ..+++|.|.++..+.|.|.|+|++|+.
T Consensus        40 k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~-v~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~~eK~  118 (133)
T d1dbha2          40 HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQ-INDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKN  118 (133)
T ss_dssp             SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCE-EEECCCSSSCCSEEEECCTTSCCEEEECSSHHHHH
T ss_pred             CeEEEEEecCeEEEEEecccccccccCCCccEEEEeeeeccccc-ccccCCCcccccceeEEcCCCcEEEEEECCHHHHH
Confidence            57999999999999985433211  0      124789999998 444433  467899998876678999999999999


Q ss_pred             HHHHHHHHHhc
Q psy8929         133 NWMSAIKRTAA  143 (160)
Q Consensus       133 ~Wi~al~~~~~  143 (160)
                      .||++|.++..
T Consensus       119 ~W~~~l~~~~~  129 (133)
T d1dbha2         119 NWMAALISLQY  129 (133)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998654

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=2.4e-08  Score=71.09  Aligned_cols=41  Identities=22%  Similarity=0.506  Sum_probs=34.7

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSE   48 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~   48 (160)
                      .++|+||||||+++.|+||++..+..+   .|.|+|..+..+..
T Consensus       121 ~~~Wkkr~fvL~~~~L~yy~~~~~~~~---~~~i~L~~~~~~~~  161 (209)
T d1u5ea1         121 GFEWQKRWCALSKTVFYYYGSDKDKQQ---KGEFAIDGYDVRMN  161 (209)
T ss_dssp             TCCCEEEEEEEETTEEEEESSTTCSSC---SEEEECTTCEEEEC
T ss_pred             cccceEEEEEEECCEEEEEecCCCCcc---ceEEEecceeeeec
Confidence            368999999999999999999877665   79999999765443

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.8e-08  Score=65.15  Aligned_cols=41  Identities=29%  Similarity=0.596  Sum_probs=34.7

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      ..++||+|||||+++.|+||+++.+..+   .+.|+|..+..+.
T Consensus        20 ~~k~WkkR~fvL~~~~l~y~~~~~~~~~---~~~~~l~~~~~~~   60 (118)
T d1v89a_          20 IVKNWQQRYFVLRAQQLYYYKDEEDTKP---QGCMYLPGCTIKE   60 (118)
T ss_dssp             SSSCEEEEEEEEETTEEEEESSSSCCSC---SEEECSTTEEEEE
T ss_pred             CCCCcEEEEEEEECCEEEEecccCcccc---cceeccCceEEEE
Confidence            4578999999999999999999877766   7899999866543

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=1.2e-07  Score=65.05  Aligned_cols=83  Identities=8%  Similarity=0.156  Sum_probs=61.7

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccC-CccceeEEcCCceeeeecCC--------CCCceEEEEeC-CCcEEEEEcCCHH
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEES-GVLDGVVALNNVTSLSEVPV--------ARNFGFQITTW-DSKRTILSAVTAG  129 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~-~~~~g~I~L~~~~~v~~~~~--------~~~~~F~i~t~-~~r~~~l~a~s~~  129 (160)
                      +.|+.|||+|-+..|.|++....... =...+.|+|..+.. ...++        .-+++|.|..+ .++.|.|+|+|++
T Consensus        41 ~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v-~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~A~s~~  119 (162)
T d2dfka2          41 GRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEV-IDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLE  119 (162)
T ss_dssp             CCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEE-EECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHH
T ss_pred             CCceeEEEEEeCCeEEEEEecCCCCCceEEccccchhhcee-eecccccccccCccccceEEEEECCCCeEEEEEeCCHH
Confidence            46899999999999999975443211 12368899988884 43322        13578999854 3468999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy8929         130 IRNNWMSAIKRTAA  143 (160)
Q Consensus       130 e~~~Wi~al~~~~~  143 (160)
                      |+..||++|+.+..
T Consensus       120 eK~~W~~~l~~~~~  133 (162)
T d2dfka2         120 EKIRWLRAFREERK  133 (162)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.64  E-value=9.5e-09  Score=67.08  Aligned_cols=27  Identities=22%  Similarity=0.607  Sum_probs=23.2

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccC
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEES   31 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~   31 (160)
                      .++|+||||||+++.|+||+++.+..+
T Consensus        29 ~~~W~kr~~vL~~~~L~yy~~~~~~~~   55 (122)
T d1droa_          29 NRSWDKVYMAAKAGRISFYKDQKGYKS   55 (122)
T ss_dssp             CCCCEEEEEEESSSCCBEESSSSHHHH
T ss_pred             CCCceEEEEEEeCCEEEEEcCcccccc
Confidence            467999999999999999998876443

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.9e-08  Score=64.64  Aligned_cols=41  Identities=24%  Similarity=0.515  Sum_probs=28.3

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccC-Ccccceeeccccee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEES-GVLDGVVALNNVTS   45 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~-~~l~g~i~l~~~~~   45 (160)
                      .++|++|||||+++.|+||+++.+... ..+.+.|+|..|..
T Consensus        24 ~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v   65 (133)
T d2j59m1          24 IRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLI   65 (133)
T ss_dssp             --CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEE
T ss_pred             CCCceEEEEEEeCCEEEEEeccccccccccccccceecceEE
Confidence            357999999999999999998765432 23468899998764

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.3e-08  Score=64.49  Aligned_cols=36  Identities=14%  Similarity=0.410  Sum_probs=24.4

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~   44 (160)
                      .+.|+||||||+++.|+||+++... +   .+.|+|..|.
T Consensus        21 ~k~W~kRwfvL~~~~L~y~~~~~~~-~---~~~i~l~~~~   56 (101)
T d2elba2          21 SSTWDRQFYFTQGGNLMSQARGDVA-G---GLAMDIDNCS   56 (101)
T ss_dssp             --CCCEEEEEEETTEEEEECTTCCC-E-------EEEECC
T ss_pred             ccccEEEEEEEeCCEEEEEccCCcc-c---ceEEEecccc
Confidence            4579999999999999999876543 2   4788887654

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.9e-08  Score=62.24  Aligned_cols=40  Identities=35%  Similarity=0.726  Sum_probs=33.7

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++|+||||||+++.|+||.++.+..+   .+.|+|..+....
T Consensus        23 ~k~W~kr~~vL~~~~L~~y~~~~~~~~---~~~i~l~~~~v~~   62 (107)
T d1upqa_          23 LRLWKRRWFVLSGHCLFYYKDSREESV---LGSVLLPSYNIRP   62 (107)
T ss_dssp             SCCEEEEEEEEETTEEEEESSTTCCSC---CEEEEGGGCEEEE
T ss_pred             CCCeeEEEEEEECCEEEEecCcccccc---cceecccceEEEE
Confidence            467999999999999999998877666   7899998876543

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.57  E-value=7.5e-08  Score=62.55  Aligned_cols=66  Identities=15%  Similarity=0.300  Sum_probs=41.2

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEe-CCEEEEEeCCCCc
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLR-GCSLLYYRDPKAE   83 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~-~~~L~yyk~~~~~   83 (160)
                      .+.|++|||||+++.|.||+++.+  .   .+.|++..+..+.......+         ..++++. ++.-+++..++..
T Consensus        24 ~~~WkkR~fvL~~~~L~yy~~~~~--~---~~~i~l~~~~~v~~~~~~~~---------~~f~i~~~~~~~~~f~a~s~~   89 (119)
T d1omwa2          24 LTQWQRRYFYLFPNRLEWRGEGEA--P---QSLLTMEEIQSVEETQIKER---------KCLLLKIRGGKQFVLQCDSDP   89 (119)
T ss_dssp             ---CEEEEEEEETTEEEEECTTSC--C---CEEEEGGGEEEEEEEESSSC---------EEEEEEETTSCEEEEECSSHH
T ss_pred             CCCeEEEEEEEEcCeEEEEecccc--c---Cccceecccccccccccccc---------ceEEEEcCCCcEEEEECCCHH
Confidence            345999999999999999987754  2   46788887766544332222         2344554 3455666655554


Q ss_pred             c
Q psy8929          84 E   84 (160)
Q Consensus        84 ~   84 (160)
                      +
T Consensus        90 e   90 (119)
T d1omwa2          90 E   90 (119)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.8e-08  Score=63.47  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=41.8

Q ss_pred             CCCceEEEEEEeCCe--EEEeeCCCcccCCcccceeecccceeecccccccceeeeeeeceEEEEEEeCCEEEEEeCCCC
Q psy8929           5 KHTWTKHWFVLRGCS--LLYYRDPKAEESGVLDGVVALNNVTSLSEVPVARNFGFQITTWTKHWFVLRGCSLLYYRDPKA   82 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~--L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~~kk~g~~~~~WkkrwfvL~~~~L~yyk~~~~   82 (160)
                      .++||||||||+++.  ++||.++.+.+.. ..|.|++..+......+.....+.     .-.+.+..++.-+++.-+++
T Consensus        22 ~k~WkkRwfvL~~~~~~~yy~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~~~~~~-----~~~~~i~~~~r~~~f~A~s~   95 (126)
T d1wi1a_          22 WKRWKKRFFVLVQVSQYTFAMCSYREKKAE-PQELLQLDGYTVDYTDPQPGLEGG-----RAFFNAVKEGDTVIFASDDE   95 (126)
T ss_dssp             CCSCEEEEEEEEEEETTEEEEEECCSSSSC-CSEEEECSSCEEEECCCCSSCCSC-----SSEEEEECSSCEEEEECSSH
T ss_pred             CCCceEEEEEEeCCceEEEEEccccccccc-ceeeeeeceeeeeecccccccccc-----ceeEEeccCCeEEEEEECCH
Confidence            468999999998765  3344444443333 358999988765443332211110     01223555666666666655


Q ss_pred             ccC
Q psy8929          83 EES   85 (160)
Q Consensus        83 ~~~   85 (160)
                      .+.
T Consensus        96 ~e~   98 (126)
T d1wi1a_          96 QDR   98 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=4.6e-08  Score=65.28  Aligned_cols=40  Identities=23%  Similarity=0.476  Sum_probs=32.6

Q ss_pred             CCCceEEEEEEeCC------eEEEeeCCCcccCCcccceeecccceeec
Q psy8929           5 KHTWTKHWFVLRGC------SLLYYRDPKAEESGVLDGVVALNNVTSLS   47 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~------~L~yy~~~~~~~~~~l~g~i~l~~~~~~~   47 (160)
                      .++||||||||+++      .|.||+++.+..+   .|.|+|..+..+.
T Consensus        39 ~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~---~g~i~l~~~~~~~   84 (136)
T d1v5ma_          39 TAQWQKCRLLLRRAVAGERFRLEFFVPPKASRP---KVSIPLSAIIEVR   84 (136)
T ss_dssp             SCCCEEEEEEEEECSSSCCEEEEEESSTTSSSC---SSCEETTTCCBCC
T ss_pred             CCCceEEEEEEeCCcccchhhhhhhCcccccCc---Ccceecccceeee
Confidence            57799999999975      4889999988777   7889988765543

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=98.52  E-value=7.6e-08  Score=60.93  Aligned_cols=42  Identities=17%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCccc---CCcccceeecccceee
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEE---SGVLDGVVALNNVTSL   46 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~---~~~l~g~i~l~~~~~~   46 (160)
                      .++|++|||||+++.|+||+++.+..   ...+.+.|++..|...
T Consensus        20 ~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~   64 (106)
T d1btna_          20 SRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICE   64 (106)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEE
T ss_pred             CCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceee
Confidence            46799999999999999999886432   2334577888876543

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=98.51  E-value=8.7e-08  Score=62.28  Aligned_cols=40  Identities=30%  Similarity=0.446  Sum_probs=28.5

Q ss_pred             CCCceEEEEEEeCCeEEEeeCCCcccC---Ccccceeecccce
Q psy8929           5 KHTWTKHWFVLRGCSLLYYRDPKAEES---GVLDGVVALNNVT   44 (160)
Q Consensus         5 ~~~Wkkrwfvl~~~~L~yy~~~~~~~~---~~l~g~i~l~~~~   44 (160)
                      .++||+|||||+++.|+||+++.+...   ..+.+.+++..+.
T Consensus        29 ~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (123)
T d1wjma_          29 NRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQ   71 (123)
T ss_dssp             CCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCE
T ss_pred             CCCCcEEEEEEECCEEEEEecchhcccccccccccccccccee
Confidence            578999999999999999998765443   1223445555543

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.8e-08  Score=63.16  Aligned_cols=42  Identities=33%  Similarity=0.480  Sum_probs=27.3

Q ss_pred             CCCCCceEEEEEEeCCeE-EEeeCCCcccCCcccceeeccccee
Q psy8929           3 NKKHTWTKHWFVLRGCSL-LYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         3 ~~~~~Wkkrwfvl~~~~L-~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      ...+.||||||||++..+ +||..+..... .+.|.|+|..+..
T Consensus        22 ~~~k~WkkR~fvL~~~~~~~~~~~~~~~~~-~p~~~i~L~~~~i   64 (116)
T d1x1ga1          22 HKRKNWKVRRFVLRKDPAFLHYYDPSKEEN-RPVGGFSLRGSLV   64 (116)
T ss_dssp             SSSSSEEEEEEEEEESSCEEEEECSSSCCS-SCSCCEESTTCCC
T ss_pred             CCCCCCceEEEEEECCCcEEEEeccccccc-cceeEEEcCCCEE
Confidence            346789999999986554 33333333322 2369999998654

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.1e-07  Score=58.31  Aligned_cols=43  Identities=28%  Similarity=0.483  Sum_probs=30.4

Q ss_pred             CCCCceEEEEEEeCCe--EEEeeCCCcccCCcccceeecccceeeccc
Q psy8929           4 KKHTWTKHWFVLRGCS--LLYYRDPKAEESGVLDGVVALNNVTSLSEV   49 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~--L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~   49 (160)
                      ..++||+|||||+++.  |+||.++.+..+   .|.|++..+..+...
T Consensus        14 ~~k~WkkR~fvL~~~~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~   58 (104)
T d2i5fa1          14 RRKNWKVRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVVTSVE   58 (104)
T ss_dssp             TTCCEEEEEEEEETTTTEEEEECTTSCSSC---SEEEECTTCEEEEEC
T ss_pred             CCCCcEEEEEEEECCeeEEEEEcCccccCc---cceEeecceEEEEec
Confidence            3578999999999754  445555555454   699999987665433

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.9e-08  Score=62.12  Aligned_cols=37  Identities=22%  Similarity=0.506  Sum_probs=27.1

Q ss_pred             CCCCceEEEEEEeC-CeEEEeeCCCcccCCcccceeecccc
Q psy8929           4 KKHTWTKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNV   43 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~-~~L~yy~~~~~~~~~~l~g~i~l~~~   43 (160)
                      ..++||+|||||++ +.|+||.++.+..+   .|.|+|..+
T Consensus        19 ~~k~Wk~RwfvL~~~~~l~~~~~~~~~~~---~~~i~l~~~   56 (118)
T d1unqa_          19 YIKTWRPRYFLLKNDGTFIGYKERPQDVD---QREAPLNNF   56 (118)
T ss_dssp             SSCCEEEEEEEEETTSEEEEESSCCCSHH---HHTSCSEEE
T ss_pred             CCCCcEEEEEEEeccceeEEEeeccCccc---cccccccce
Confidence            35789999999985 67888877665444   577777654

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.6e-06  Score=55.28  Aligned_cols=82  Identities=12%  Similarity=0.213  Sum_probs=59.8

Q ss_pred             eceEEEEEEeCCEEEEEeCCCCc---cCCccceeEEcCCceeeeecCCCCCceEEEEeC----CCcEEEEEcCCHHHHHH
Q psy8929          61 TWTKHWFVLRGCSLLYYRDPKAE---ESGVLDGVVALNNVTSLSEVPVARNFGFQITTW----DSKRTILSAVTAGIRNN  133 (160)
Q Consensus        61 ~WkkrwfvL~~~~L~yyk~~~~~---~~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~----~~r~~~l~a~s~~e~~~  133 (160)
                      ..+.|++.|=+..|.|.+-....   ..-.....|.+..+. +.+..+..++.|.|...    ....|.|+|.|++|++.
T Consensus        30 k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~i~~~~~~~~~~~~~l~a~s~~eK~~  108 (121)
T d1ntya2          30 KGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELG-VTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQD  108 (121)
T ss_dssp             CEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEE-EECCCTTCTTEEEEEESSSCCTTTCEEEECSSHHHHHH
T ss_pred             CCcEEEEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceE-EEEcCCCCCceEEEEEecCCCCceEEEEECCCHHHHHH
Confidence            35689999999999998632221   111235667888876 55554557889999642    23579999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||++|++++.
T Consensus       109 W~~~I~~~i~  118 (121)
T d1ntya2         109 WIKHIREVIQ  118 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999885

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=98.08  E-value=2.2e-05  Score=50.37  Aligned_cols=80  Identities=21%  Similarity=0.220  Sum_probs=54.7

Q ss_pred             eEEEEEEeCCEEEEEeCCCCcc---------------CCccceeEEcCCceeeeecCCCCCceEEEEeCCC--cEEEEEc
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEE---------------SGVLDGVVALNNVTSLSEVPVARNFGFQITTWDS--KRTILSA  125 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~---------------~~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~--r~~~l~a  125 (160)
                      +.|++.|=+..|.+.+...+..               .-.....|.|+... +.+.....+..|.|.+.+.  ..|.|+|
T Consensus        17 ~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~-v~e~~~d~~~~fli~~~~~~~~~y~l~A   95 (114)
T d1txda2          17 IDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVL-VRQVATDNKALFVISMSDNGAQIYELVA   95 (114)
T ss_dssp             CCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEE-EEECCC-CCEEEEEEECSSCEEEEEEEC
T ss_pred             eEEEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEE-EEEcCCCCCCEEEEEecCCCceEEEEEc
Confidence            3578778787777776443210               00113467788777 5554445667888887542  4799999


Q ss_pred             CCHHHHHHHHHHHHHHhc
Q psy8929         126 VTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       126 ~s~~e~~~Wi~al~~~~~  143 (160)
                      .|++|.+.||++|++++.
T Consensus        96 ~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          96 QTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999999864

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=2.6e-05  Score=52.23  Aligned_cols=81  Identities=16%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             ceEEEEEEeCCEEEEEeCCCCccC-------CccceeEEcCCceeeeecCCCCCceEEEEeCC-CcEEEEEcCCHHHHHH
Q psy8929          62 WTKHWFVLRGCSLLYYRDPKAEES-------GVLDGVVALNNVTSLSEVPVARNFGFQITTWD-SKRTILSAVTAGIRNN  133 (160)
Q Consensus        62 WkkrwfvL~~~~L~yyk~~~~~~~-------~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~-~r~~~l~a~s~~e~~~  133 (160)
                      =+.|+|.|=+..|.|.+.......       =...+.|.+.... +.+...+..+.|.|.... ...|.|.|.|++|+..
T Consensus        40 ~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~~-v~~~~~~~~~~f~~~~~~~~~~~~l~a~s~eeK~~  118 (147)
T d1kz7a2          40 PMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVG-ITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAA  118 (147)
T ss_dssp             CEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEE-EECCBTTBTTEEEEEETTTTEEEEEECSSHHHHHH
T ss_pred             CceEEEEEecCcEEEEEecccCCcccccCceEEEeeEEecCCce-eEecCCCCcceEEEEeCCCCcEEEEEeCCHHHHHH
Confidence            367899999999999885332110       0124667777776 444444566778776422 3689999999999999


Q ss_pred             HHHHHHHHhc
Q psy8929         134 WMSAIKRTAA  143 (160)
Q Consensus       134 Wi~al~~~~~  143 (160)
                      ||.+|++++.
T Consensus       119 W~~~I~~~l~  128 (147)
T d1kz7a2         119 WVNAIRKVLT  128 (147)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999775

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=8.7e-06  Score=54.16  Aligned_cols=79  Identities=22%  Similarity=0.169  Sum_probs=54.4

Q ss_pred             eEEEEEEeCCEEEEEeCCCCccC--------------CccceeEEcCCceeeeecCC--CCCceEEEEeCCCcEEEEEcC
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEES--------------GVLDGVVALNNVTSLSEVPV--ARNFGFQITTWDSKRTILSAV  126 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~~--------------~~~~g~I~L~~~~~v~~~~~--~~~~~F~i~t~~~r~~~l~a~  126 (160)
                      +.|+|.|=.+.|.|-+.......              -.....|.|..+. +....+  .-.+.|.+..++ +.|.|+|+
T Consensus        38 k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~-v~~~~d~~~~~~~~~~~~~~-~~~~l~a~  115 (142)
T d1ki1b2          38 KELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVL-VKLPTDPSGDEPIFHISHID-RVYTLRAE  115 (142)
T ss_dssp             CCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEE-EECCSSSCCC---CEEEETT-EEEECBCS
T ss_pred             CEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhhe-eeccCCcccceeEEEecCCC-EEEEEEeC
Confidence            57899999999998764332100              0113457777776 333333  344677888875 89999999


Q ss_pred             CHHHHHHHHHHHHHHhc
Q psy8929         127 TAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       127 s~~e~~~Wi~al~~~~~  143 (160)
                      |++|+..||++|++|+.
T Consensus       116 s~~ek~~W~~~I~~Ai~  132 (142)
T d1ki1b2         116 SINERTAWVQKIKAASE  132 (142)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999999987

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=8.9e-05  Score=48.87  Aligned_cols=82  Identities=18%  Similarity=0.200  Sum_probs=54.6

Q ss_pred             eeceEEEEEEeCCEEEEEeCCCCccC---------------CccceeEEcCCceeeeecCCCCCceEEEEeC----CCcE
Q psy8929          60 TTWTKHWFVLRGCSLLYYRDPKAEES---------------GVLDGVVALNNVTSLSEVPVARNFGFQITTW----DSKR  120 (160)
Q Consensus        60 ~~WkkrwfvL~~~~L~yyk~~~~~~~---------------~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~----~~r~  120 (160)
                      +..+.|+|.|=...|.|.+.......               ....+.+.+.... +.... ..+++|.|+..    ....
T Consensus        38 ~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-~~~~~f~li~~~~~~~~~~  115 (140)
T d1xcga2          38 DKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVL-IRSVA-TDKRAFFIICTSKLGPPQI  115 (140)
T ss_dssp             SCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEE-EEECS-SCSSEEEEEECCSSSTTCE
T ss_pred             CCceEEEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecceEE-EecCC-CCCCeEEEEEcCCCCCceE
Confidence            45568999999999998875433100               0001234444433 33332 35688988752    1368


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         121 TILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       121 ~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      |.|+|+|++|...|+++|+++|.
T Consensus       116 ~~l~A~s~~eK~~Wi~~i~~aI~  138 (140)
T d1xcga2         116 YELVALTSSDKNTWMELLEEAVR  138 (140)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999985

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.00029  Score=43.52  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=63.1

Q ss_pred             eeeeceEEEEEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecC--CCCCceEEEEeCCCc-EEEEEcCCHHHHHHH
Q psy8929          58 QITTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVP--VARNFGFQITTWDSK-RTILSAVTAGIRNNW  134 (160)
Q Consensus        58 ~~~~WkkrwfvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~--~~~~~~F~i~t~~~r-~~~l~a~s~~e~~~W  134 (160)
                      ....|.+....|.+..|..--..   +    ...|+|.-|.......  +..+..|+|.+++++ +..|.|.+..+.+.|
T Consensus        23 ~~~rW~rVl~~L~ed~Lt~s~~~---d----~k~IPLKmcyvtR~~~~~D~EnR~lElhSpDG~~t~iLR~kD~a~A~~W   95 (105)
T d2adza1          23 GGERWQRVLLSLAEDALTVSPLS---E----AKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSW   95 (105)
T ss_dssp             SCCCCEEEEEEEETTEEEEESSC---S----CEEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHH
T ss_pred             cccceeeeeeecccceEEeeccc---c----cceeeeeeEEeeecccCCCCcccEEEEECCCCCceEEEEcCCHHHHHHH
Confidence            35679999999999999876321   2    4789999999544332  245679999999986 889999999999999


Q ss_pred             HHHHHHHhc
Q psy8929         135 MSAIKRTAA  143 (160)
Q Consensus       135 i~al~~~~~  143 (160)
                      .+||+..+.
T Consensus        96 F~Aihs~i~  104 (105)
T d2adza1          96 AGAIQAQIG  104 (105)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhc
Confidence            999998774

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=0.0001  Score=47.59  Aligned_cols=79  Identities=6%  Similarity=0.109  Sum_probs=55.9

Q ss_pred             eEEEEEEeCCEEEEEeCCCCccC--CccceeEEcCCceeeeecCCCCCceEEEEeCCC------cEEEEEcCCHHHHHHH
Q psy8929          63 TKHWFVLRGCSLLYYRDPKAEES--GVLDGVVALNNVTSLSEVPVARNFGFQITTWDS------KRTILSAVTAGIRNNW  134 (160)
Q Consensus        63 kkrwfvL~~~~L~yyk~~~~~~~--~~~~g~I~L~~~~~v~~~~~~~~~~F~i~t~~~------r~~~l~a~s~~e~~~W  134 (160)
                      +.|++.|=...|.|++.......  =...+.|.|+.+.. .+.. +....|.|...+.      ..+.++|.|+++++.|
T Consensus        26 k~R~vFLF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v-~e~~-gd~~~F~i~~~~~~~~~~~~~~~~~a~s~~~K~~W  103 (119)
T d1fhoa_          26 KLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNI-RQHT-TDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAW  103 (119)
T ss_dssp             EEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEE-EEEC-TTCCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHH
T ss_pred             eEEEEEEEcCeEEEEEeccCCCCceEEEecEEECCceEE-EEcC-CCCcEEEEEeCCCCCCcceEEEEEecCCHHHHHHH
Confidence            46888888888888875433211  12368899999984 4432 3457899875431      1566778999999999


Q ss_pred             HHHHHHHhc
Q psy8929         135 MSAIKRTAA  143 (160)
Q Consensus       135 i~al~~~~~  143 (160)
                      +.+|.+++.
T Consensus       104 v~~I~e~~~  112 (119)
T d1fhoa_         104 LRDIAEEQE  112 (119)
T ss_dssp             HHHHHTCCH
T ss_pred             HHHHHHHHH
Confidence            999988765

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.001  Score=43.37  Aligned_cols=77  Identities=5%  Similarity=0.011  Sum_probs=54.7

Q ss_pred             eEEEEEEeC-CEEEEEeCCCCccCCccceeEEcCCceeeeecCC---------------------CCCceEEEEeCC---
Q psy8929          63 TKHWFVLRG-CSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV---------------------ARNFGFQITTWD---  117 (160)
Q Consensus        63 kkrwfvL~~-~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~---------------------~~~~~F~i~t~~---  117 (160)
                      +.+.|.|.+ +...||+++.. +    ...|+|..+..|.....                     -...+|.|+...   
T Consensus        24 ~~~~frlD~~g~~L~W~~~~k-~----~~~l~i~~I~evR~G~~~~~~k~~kl~~~~~~~~~~~~~e~~~ftIvyg~~~v   98 (131)
T d2zkmx3          24 SPVILRVDPKGYYLYWTYQSK-E----MEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNSFLLKTLTVVSGPDMV   98 (131)
T ss_dssp             EEEEEEECTTSCEEEEEETTS-C----EEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTCCGGGTEEEEEECSSSS
T ss_pred             ceEEEEECCCCCEEEEECCCC-c----eeEEEecceeeEEeccccCCccHHHHhhhhhccCcCCCccccEEEEEECCCcc
Confidence            357777876 45555555432 2    36799999988776421                     012499999742   


Q ss_pred             -CcEEEEEcCCHHHHHHHHHHHHHHhcc
Q psy8929         118 -SKRTILSAVTAGIRNNWMSAIKRTAAM  144 (160)
Q Consensus       118 -~r~~~l~a~s~~e~~~Wi~al~~~~~~  144 (160)
                       -+.+.|.|.|+++++.|+..|+..+.+
T Consensus        99 ~l~~l~lVA~s~~~a~~W~~gL~~L~~n  126 (131)
T d2zkmx3          99 DLTFHNFVSYKENVGKAWAEDVLALVKH  126 (131)
T ss_dssp             SCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred             cceEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence             268889999999999999999997753

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.0022  Score=40.64  Aligned_cols=45  Identities=11%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             CCc-eEEEEEEe-CCeEEEeeCCCcccCCcccceeecccceeeccccc
Q psy8929           6 HTW-TKHWFVLR-GCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV   51 (160)
Q Consensus         6 ~~W-kkrwfvl~-~~~L~yy~~~~~~~~~~l~g~i~l~~~~~~~~~~~   51 (160)
                      ++| ++|||+|. +..+.||.++.+..... .+.|+++.+..|..+..
T Consensus        23 ~~~~k~R~f~L~~d~~~i~~~~~~~~~~~~-~~~i~i~~I~~V~~G~~   69 (119)
T d1maia_          23 SSWRRERFYKLQEDCKTIWQESRKVMRSPE-SQLFSIEDIQEVRMGHR   69 (119)
T ss_dssp             SSCEEEEEEEECTTSSEEEECCCCTTCCTT-TTEEEGGGEEEEEESSC
T ss_pred             CCCCEEEEEEEcCCCCEEEEeCCCCCCCcc-ceEEEHHHceEEEcCCC
Confidence            456 55999996 56677887665433322 58999999888765543

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.022  Score=36.46  Aligned_cols=42  Identities=10%  Similarity=0.173  Sum_probs=32.4

Q ss_pred             CCCCceEEEEEEeCCeEEEeeCCCcccCCcccceeeccccee
Q psy8929           4 KKHTWTKHWFVLRGCSLLYYRDPKAEESGVLDGVVALNNVTS   45 (160)
Q Consensus         4 ~~~~Wkkrwfvl~~~~L~yy~~~~~~~~~~l~g~i~l~~~~~   45 (160)
                      ..+.|+.|||+|-+..|.|++.......-...+.|++..+..
T Consensus        40 ~~~~~k~R~~fLF~~~Ll~~k~~~~~~~~~~k~~i~l~~~~v   81 (132)
T d1v61a_          40 ACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVV   81 (132)
T ss_dssp             SSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBC
T ss_pred             cCCCcceEEEEEeCCEEEEEEEcCCCceeEEeeecchhhccc
Confidence            467899999999999999998654443444468888888653

>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.34  E-value=0.36  Score=31.56  Aligned_cols=76  Identities=13%  Similarity=0.290  Sum_probs=53.6

Q ss_pred             EEEeCCEEEEEeCCCCccCC----------------ccceeEEcCCceeeeecCC---CCCceEEEEeC----C---CcE
Q psy8929          67 FVLRGCSLLYYRDPKAEESG----------------VLDGVVALNNVTSLSEVPV---ARNFGFQITTW----D---SKR  120 (160)
Q Consensus        67 fvL~~~~L~yyk~~~~~~~~----------------~~~g~I~L~~~~~v~~~~~---~~~~~F~i~t~----~---~r~  120 (160)
                      ||++...+..|++.......                ..+-.|+++... |.....   ...+.++|++.    +   .++
T Consensus        55 FVFK~AVV~vcke~sk~KkKl~~~~~~~~~~e~d~~rFr~mIP~~alQ-VR~~~~~~~es~~vwEiiH~kSe~egRpE~v  133 (162)
T d1foea2          55 FVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQ-VRALPSADAEANAVCEIVHVKSESEGRPERV  133 (162)
T ss_dssp             EEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEE-EECCCCTTTTSCCEEEEEECCBTGGGBCCEE
T ss_pred             EEecceEEEEEcccchhhhhccCccccccccccCceeEEEEeeeeeeE-eecccccCCCcceEEEEEeecccccCCcceE
Confidence            89999888889875442110                012356666665 444332   35688999862    1   269


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHhc
Q psy8929         121 TILSAVTAGIRNNWMSAIKRTAA  143 (160)
Q Consensus       121 ~~l~a~s~~e~~~Wi~al~~~~~  143 (160)
                      |.||+.+++..+.-|.+|++.+.
T Consensus       134 fqlc~St~E~K~~flK~Ir~ilr  156 (162)
T d1foea2         134 FHLCCSSPESRKDFLKSVHSILR  156 (162)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999775

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.25  Score=31.16  Aligned_cols=73  Identities=8%  Similarity=0.125  Sum_probs=54.1

Q ss_pred             EEEeCCEEEEEeCCCCccCCccceeEEcCCceeeeecCC-----CCCceEEEEeCCCcEEEEEcC-CHHHHHHHHHHHHH
Q psy8929          67 FVLRGCSLLYYRDPKAEESGVLDGVVALNNVTSLSEVPV-----ARNFGFQITTWDSKRTILSAV-TAGIRNNWMSAIKR  140 (160)
Q Consensus        67 fvL~~~~L~yyk~~~~~~~~~~~g~I~L~~~~~v~~~~~-----~~~~~F~i~t~~~r~~~l~a~-s~~e~~~Wi~al~~  140 (160)
                      ..|+.-.|.+-..+.+...   ...|+|+.+..++....     ...+.++|..++.|.+.|... +..+..+|..+|..
T Consensus        32 L~lTnyrliF~~~~~~~~~---~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKDfr~~~f~f~~e~~~~~~v~~~L~~  108 (125)
T d1zsqa1          32 LTVTNYRLYFKSMERDPPF---VLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMK  108 (125)
T ss_dssp             EEEESSEEEEEESSSSSCE---EEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTTEEEEEECCGGGCCHHHHHHHHHH
T ss_pred             EEEEeeEEEEEcCCCCccE---EEEeccceeeeeeecccccccCCccccEEEEeccCeEEEEEEcCCccHHHHHHHHHHH
Confidence            4677777877655554332   56788988888776533     245789999999999999874 44677899999998


Q ss_pred             Hh
Q psy8929         141 TA  142 (160)
Q Consensus       141 ~~  142 (160)
                      ..
T Consensus       109 ~a  110 (125)
T d1zsqa1         109 YA  110 (125)
T ss_dssp             HS
T ss_pred             hC
Confidence            75

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.46  E-value=2  Score=26.19  Aligned_cols=72  Identities=10%  Similarity=0.101  Sum_probs=51.9

Q ss_pred             EEEeCCEEEEEeCCCCccC-----------CccceeEEcCCceeeeecCC-CCCceEEEEeCCCcEEEEEcCCHHHHHHH
Q psy8929          67 FVLRGCSLLYYRDPKAEES-----------GVLDGVVALNNVTSLSEVPV-ARNFGFQITTWDSKRTILSAVTAGIRNNW  134 (160)
Q Consensus        67 fvL~~~~L~yyk~~~~~~~-----------~~~~g~I~L~~~~~v~~~~~-~~~~~F~i~t~~~r~~~l~a~s~~e~~~W  134 (160)
                      +.++...|++..++.+...           ......+.+..+..|..-.- -++.+++|.+.+++.|+|..++.+.+++=
T Consensus        22 l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif~~~~~s~~~~F~~~~~~~~v  101 (110)
T d1t77a2          22 LSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKV  101 (110)
T ss_dssp             EEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEEETTSCEEEEECSSHHHHHHH
T ss_pred             EEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEEEcCCcEEEEEeCCHHHHHHH
Confidence            6788889988877654210           11145678888776553211 46789999999999999999999999887


Q ss_pred             HHHH
Q psy8929         135 MSAI  138 (160)
Q Consensus       135 i~al  138 (160)
                      +++|
T Consensus       102 ~~~l  105 (110)
T d1t77a2         102 VNFL  105 (110)
T ss_dssp             HHHS
T ss_pred             HHhc
Confidence            7665