Psyllid ID: psy899

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
MKRDMSSLDVQKQPPCPNGYHTRLAQWRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSSTVSLKDISSEEIASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLGLRKLEEENVQVDLNGTPN
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEccHHHHcccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHccEEcEEEccccEEEEccccEEEEEccccccccccEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccEEEccccccc
ccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEcHHHHcccccccccccccccccccEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEccccEEEEEccccEEEEEEcccccccccEEEEccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccc
mkrdmssldvqkqppcpngyhtrlaqwrhrvrypvvskffgtwgsgcfqpcennrverpvmelplkvsstvslkdisseEIASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELnvkslnettmiprkdyntnrlksgllqlssstyLILDeihlqpgqlnntgclnvKALSSVVnnqrmsydfqfydgtfptdipvlslsdtksmlpsdchiklkpdpscssVIRETFSAAHQYLKPELLNKIRTYISWIQnrgfdipenLTEIVQKDFVEMRKEnkktdandLHTLIVLARLEHlrlrpathYQVDLIRLMslshghselTEDMWKVALAMEKErksrprlglrkleeenvqvdlngtpn
mkrdmssldvqkqppcpngyHTRLAQWRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVsstvslkdisseeiaSTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFElnvkslnettmiprkdyNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKenkktdandlhTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKErksrprlglrkleeenvqvdlngtpn
MKRDMSSLDVQKQPPCPNGYHTRLAQWRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSSTVSLKDISSEEIASTRKDlkllltqllMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLGLRKLEEENVQVDLNGTPN
******************GYHTRLAQWRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKV***************STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMR*****TDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVAL*******************************
*****************NGYHTRLAQWRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPL*****************STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIF*************MLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKP*************AAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFV****************LIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKER******************DL*****
************QPPCPNGYHTRLAQWRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSSTVSLKDISSEEIASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLGLRKLEEENVQVDLNGTPN
***********KQPPCPNGYHTRLAQWRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSSTVSLKDISSEEIASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLGLRKLEEENVQVDLN****
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MKRDMSSLDVQKQPPCPNGYHTRLAQWRHRVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSSTVSLKDISSEEIASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPRLGLRKLEEENVQVDLNGTPN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query411 2.2.26 [Sep-21-2011]
Q9VM60605 Mini-chromosome maintenan yes N/A 0.695 0.472 0.394 7e-61
Q28DV7627 Mini-chromosome maintenan yes N/A 0.695 0.456 0.389 2e-52
Q803A6631 Mini-chromosome maintenan yes N/A 0.698 0.454 0.382 2e-52
Q5ZJV4633 Mini-chromosome maintenan yes N/A 0.683 0.443 0.362 2e-50
B1H268642 Mini-chromosome maintenan yes N/A 0.683 0.437 0.365 6e-50
Q8R3C0642 Mini-chromosome maintenan yes N/A 0.683 0.437 0.365 1e-49
B5DG51626 Mini-chromosome maintenan N/A N/A 0.690 0.453 0.361 3e-49
A5PJM5642 Mini-chromosome maintenan yes N/A 0.683 0.437 0.362 7e-49
Q9BTE3642 Mini-chromosome maintenan yes N/A 0.734 0.470 0.355 9e-49
Q7ZYP6626 Mini-chromosome maintenan N/A N/A 0.695 0.456 0.386 1e-47
>sp|Q9VM60|MCMBP_DROME Mini-chromosome maintenance complex-binding protein OS=Drosophila melanogaster GN=CG3430 PE=1 SV=1 Back     alignment and function desciption
 Score =  234 bits (598), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 121/307 (39%), Positives = 189/307 (61%), Gaps = 21/307 (6%)

Query: 83  STRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSD 142
           +  KDL++LL   L  DD+AA+YL+ +L+S VY R E+  ++GKF+LN+   +L  +C  
Sbjct: 307 AVHKDLRMLLKLCLFDDDLAAEYLLSHLISTVYSRSEMQ-SIGKFALNLC--NLPKNCEA 363

Query: 143 YAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEI 202
           YA  LY IL+LL+  SHY  + + +LN     P+KDY TN+L SG+LQL+  T+L+LDE 
Sbjct: 364 YATKLYQILELLLPASHYMPMTLVTLNTAAFAPKKDYETNKLVSGVLQLAPHTHLVLDET 423

Query: 203 HLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHI 262
            +Q G+L   G   V+ L+ ++NNQ +  DFQ+Y   +  +IPVL LS+ +SMLPSD  +
Sbjct: 424 CMQQGKLEANGVHAVQHLAHLINNQELKCDFQYYQIDYQANIPVLVLSEGRSMLPSDFVL 483

Query: 263 KLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEM 322
            +  D     ++ E+  AAH YL+P  L + R Y++  +  GF++ E  TE++Q+DFV+M
Sbjct: 484 PINADSKAVELVDESLKAAHHYLQPSRLQQFRKYLTTARTSGFNVSEEHTEMIQQDFVDM 543

Query: 323 RKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAM 382
           RK N K++A+DLH L+VL+                  RL+ ++ G   L ++ W++A   
Sbjct: 544 RKANVKSNADDLHGLLVLS------------------RLLGIARGKDTLDKETWQLATEF 585

Query: 383 EKERKSR 389
           E +R+ R
Sbjct: 586 EAKRRQR 592
Associated component of the MCM complex that acts as a regulator of DNA replication. Binds to the MCM complex during late S phase and may act by promoting the disassembly of the MCM complex from chromatin.
Drosophila melanogaster (taxid: 7227)
>sp|Q28DV7|MCMBP_XENTR Mini-chromosome maintenance complex-binding protein OS=Xenopus tropicalis GN=mcmbp PE=2 SV=2 Back     alignment and function description
>sp|Q803A6|MCMBP_DANRE Mini-chromosome maintenance complex-binding protein OS=Danio rerio GN=mcmbp PE=2 SV=2 Back     alignment and function description
>sp|Q5ZJV4|MCMBP_CHICK Mini-chromosome maintenance complex-binding protein OS=Gallus gallus GN=MCMBP PE=2 SV=2 Back     alignment and function description
>sp|B1H268|MCMBP_RAT Mini-chromosome maintenance complex-binding protein OS=Rattus norvegicus GN=Mcmbp PE=2 SV=1 Back     alignment and function description
>sp|Q8R3C0|MCMBP_MOUSE Mini-chromosome maintenance complex-binding protein OS=Mus musculus GN=Mcmbp PE=2 SV=1 Back     alignment and function description
>sp|B5DG51|MCMBP_SALSA Mini-chromosome maintenance complex-binding protein OS=Salmo salar GN=mcmbp PE=2 SV=1 Back     alignment and function description
>sp|A5PJM5|MCMBP_BOVIN Mini-chromosome maintenance complex-binding protein OS=Bos taurus GN=MCMBP PE=2 SV=1 Back     alignment and function description
>sp|Q9BTE3|MCMBP_HUMAN Mini-chromosome maintenance complex-binding protein OS=Homo sapiens GN=MCMBP PE=1 SV=2 Back     alignment and function description
>sp|Q7ZYP6|MCMBP_XENLA Mini-chromosome maintenance complex-binding protein OS=Xenopus laevis GN=mcmbp PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
91078452 572 PREDICTED: similar to CG3430 CG3430-PA [ 0.725 0.520 0.416 2e-62
345484350 583 PREDICTED: mini-chromosome maintenance c 0.698 0.492 0.407 3e-61
307175977 530 UPF0557 protein C10orf119-like protein [ 0.703 0.545 0.430 1e-60
383864310 606 PREDICTED: mini-chromosome maintenance c 0.693 0.470 0.431 2e-59
195471617 606 GE14231 [Drosophila yakuba] gi|194174200 0.722 0.490 0.388 3e-59
195338805 605 GM16255 [Drosophila sechellia] gi|194129 0.695 0.472 0.390 4e-59
195577183 605 GD23441 [Drosophila simulans] gi|1941904 0.695 0.472 0.394 4e-59
18129620 605 CG3430 [Drosophila melanogaster] gi|7494 0.695 0.472 0.394 5e-59
357621620 596 hypothetical protein KGM_06389 [Danaus p 0.659 0.454 0.438 5e-59
195156469 607 GL26196 [Drosophila persimilis] gi|19411 0.739 0.500 0.375 2e-58
>gi|91078452|ref|XP_967242.1| PREDICTED: similar to CG3430 CG3430-PA [Tribolium castaneum] gi|270003864|gb|EFA00312.1| hypothetical protein TcasGA2_TC003148 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/319 (41%), Positives = 201/319 (63%), Gaps = 21/319 (6%)

Query: 71  VSLKDISSEEIASTRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLN 130
           V+ + +S++++   RK+L +LLTQL+ GD++AA+YLI + +S+VY R ++  ALGKFSLN
Sbjct: 267 VTHEKMSADKMQIIRKELLILLTQLMCGDELAAEYLIYHFISKVYLRKDL-MALGKFSLN 325

Query: 131 IFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQ 190
           I +  +  +  DY Q +Y  ++ L  KSHY  + ++++NE   +P+KDY+++RL S +LQ
Sbjct: 326 ISNVPMLENI-DYVQEIYKFVETLTTKSHYLPMLLENMNELNFVPKKDYSSDRLTSSVLQ 384

Query: 191 LSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLS 250
           LS +T+L+LDE  L PG+LN  G   V+ALS+ + NQ++ YDF +Y   +  DIP L  S
Sbjct: 385 LSDNTHLVLDETKLTPGKLNEGGVTGVRALSNTIKNQKIMYDFTYYQLEYDCDIPFLVFS 444

Query: 251 DTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPEN 310
           + KSMLPSD H+ LKP+        E   AA  +LKPELLN IR Y++  +   +D+ + 
Sbjct: 445 EGKSMLPSDVHVILKPEEMHLKTFSEILEAAKHFLKPELLNDIRLYLTNARLTQYDLSDG 504

Query: 311 LTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSE 370
           + E+VQ  FVEMR+    T  +DLH+L+VLA                  RL+ +S G + 
Sbjct: 505 VLEMVQNKFVEMRQAGNIT-GDDLHSLLVLA------------------RLVCISQGRNT 545

Query: 371 LTEDMWKVALAMEKERKSR 389
           L E+ WK A A+E+ RK R
Sbjct: 546 LDEECWKKACALEEARKER 564

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345484350|ref|XP_001600675.2| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307175977|gb|EFN65772.1| UPF0557 protein C10orf119-like protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383864310|ref|XP_003707622.1| PREDICTED: mini-chromosome maintenance complex-binding protein-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|195471617|ref|XP_002088099.1| GE14231 [Drosophila yakuba] gi|194174200|gb|EDW87811.1| GE14231 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195338805|ref|XP_002036014.1| GM16255 [Drosophila sechellia] gi|194129894|gb|EDW51937.1| GM16255 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195577183|ref|XP_002078452.1| GD23441 [Drosophila simulans] gi|194190461|gb|EDX04037.1| GD23441 [Drosophila simulans] Back     alignment and taxonomy information
>gi|18129620|ref|NP_542438.1| CG3430 [Drosophila melanogaster] gi|74948206|sp|Q9VM60.1|MCMBP_DROME RecName: Full=Mini-chromosome maintenance complex-binding protein; Short=MCM-BP; Short=MCM-binding protein gi|7297199|gb|AAF52465.1| CG3430 [Drosophila melanogaster] gi|17862506|gb|AAL39730.1| LD32660p [Drosophila melanogaster] gi|220946956|gb|ACL86021.1| CG3430-PA [synthetic construct] gi|220956512|gb|ACL90799.1| CG3430-PA [synthetic construct] Back     alignment and taxonomy information
>gi|357621620|gb|EHJ73395.1| hypothetical protein KGM_06389 [Danaus plexippus] Back     alignment and taxonomy information
>gi|195156469|ref|XP_002019122.1| GL26196 [Drosophila persimilis] gi|194115275|gb|EDW37318.1| GL26196 [Drosophila persimilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
FB|FBgn0031875605 CG3430 [Drosophila melanogaste 0.627 0.426 0.421 4.2e-57
UNIPROTKB|Q28DV7627 mcmbp "Mini-chromosome mainten 0.637 0.417 0.402 7.8e-54
UNIPROTKB|Q7ZYP6626 mcmbp "Mini-chromosome mainten 0.630 0.413 0.392 2e-53
ZFIN|ZDB-GENE-030131-9676631 mcmbp "minichromosome maintena 0.630 0.410 0.388 2e-51
UNIPROTKB|B5DG51626 mcmbp "Mini-chromosome mainten 0.649 0.426 0.364 5.3e-49
UNIPROTKB|F1NXK0634 MCMBP "Mini-chromosome mainten 0.661 0.429 0.360 8.7e-49
UNIPROTKB|Q5ZJV4633 MCMBP "Mini-chromosome mainten 0.661 0.429 0.360 8.7e-49
MGI|MGI:1920977642 Mcmbp "MCM (minichromosome mai 0.695 0.445 0.353 1.4e-48
UNIPROTKB|F1S413642 MCMBP "Uncharacterized protein 0.671 0.429 0.358 4.7e-48
UNIPROTKB|Q9BTE3642 MCMBP "Mini-chromosome mainten 0.671 0.429 0.365 9.8e-48
FB|FBgn0031875 CG3430 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 547 (197.6 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 110/261 (42%), Positives = 167/261 (63%)

Query:    83 STRKDXXXXXXXXXMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSD 142
             +  KD           DD+AA+YL+ +L+S VY R E+  ++GKF+LN+ +  L  +C  
Sbjct:   307 AVHKDLRMLLKLCLFDDDLAAEYLLSHLISTVYSRSEMQ-SIGKFALNLCN--LPKNCEA 363

Query:   143 YAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEI 202
             YA  LY IL+LL+  SHY  + + +LN     P+KDY TN+L SG+LQL+  T+L+LDE 
Sbjct:   364 YATKLYQILELLLPASHYMPMTLVTLNTAAFAPKKDYETNKLVSGVLQLAPHTHLVLDET 423

Query:   203 HLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDIPVLSLSDTKSMLPSDCHI 262
              +Q G+L   G   V+ L+ ++NNQ +  DFQ+Y   +  +IPVL LS+ +SMLPSD  +
Sbjct:   424 CMQQGKLEANGVHAVQHLAHLINNQELKCDFQYYQIDYQANIPVLVLSEGRSMLPSDFVL 483

Query:   263 KLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEM 322
              +  D     ++ E+  AAH YL+P  L + R Y++  +  GF++ E  TE++Q+DFV+M
Sbjct:   484 PINADSKAVELVDESLKAAHHYLQPSRLQQFRKYLTTARTSGFNVSEEHTEMIQQDFVDM 543

Query:   323 RKENKKTDANDLHTLIVLARL 343
             RK N K++A+DLH L+VL+RL
Sbjct:   544 RKANVKSNADDLHGLLVLSRL 564
GO:0008150 "biological_process" evidence=ND
GO:0003674 "molecular_function" evidence=ND
GO:0042555 "MCM complex" evidence=IDA
UNIPROTKB|Q28DV7 mcmbp "Mini-chromosome maintenance complex-binding protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZYP6 mcmbp "Mini-chromosome maintenance complex-binding protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9676 mcmbp "minichromosome maintenance complex binding protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B5DG51 mcmbp "Mini-chromosome maintenance complex-binding protein" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXK0 MCMBP "Mini-chromosome maintenance complex-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJV4 MCMBP "Mini-chromosome maintenance complex-binding protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1920977 Mcmbp "MCM (minichromosome maintenance deficient) binding protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S413 MCMBP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BTE3 MCMBP "Mini-chromosome maintenance complex-binding protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
pfam13615102 pfam13615, Racemase_4, Putative alanine racemase 2e-27
>gnl|CDD|222265 pfam13615, Racemase_4, Putative alanine racemase Back     alignment and domain information 
 Score =  104 bits (262), Expect = 2e-27
 Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 2/102 (1%)

Query: 91  LLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDI 150
            LT  L GD +AA+YL+ +LLSRVY R + G  LGKFSLN+       S S  A+ L  +
Sbjct: 3   YLTNALGGDALAAEYLLLHLLSRVYSRTD-GLPLGKFSLNLTGCP-KESASTLAERLSSV 60

Query: 151 LKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQLS 192
           L+ LV   HY  L +++LN   ++P+KDY TNRL SG+LQL 
Sbjct: 61  LQQLVPAVHYLPLTLENLNSLRLVPKKDYETNRLVSGVLQLP 102

This is a family of eukaryotic proteins which are putatively alanine racemase. Length = 102

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 411
KOG2545|consensus543 100.0
COG1241682 MCM2 Predicted ATPase involved in replication cont 100.0
KOG0480|consensus764 100.0
KOG0482|consensus721 100.0
KOG0481|consensus729 100.0
PTZ00111915 DNA replication licensing factor MCM4; Provisional 100.0
KOG0478|consensus804 100.0
KOG0479|consensus 818 100.0
smart00350509 MCM minichromosome maintenance proteins. 100.0
KOG0477|consensus854 100.0
PF00493331 MCM: MCM2/3/5 family This family extends the MCM d 100.0
PF13615102 Racemase_4: Putative alanine racemase 99.96
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 98.98
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 98.86
TIGR02030337 BchI-ChlI magnesium chelatase ATPase subunit I. Th 98.61
PRK13407334 bchI magnesium chelatase subunit I; Provisional 98.45
TIGR00368499 Mg chelatase-related protein. The N-terminal end m 98.42
PRK09862506 putative ATP-dependent protease; Provisional 98.35
CHL00081350 chlI Mg-protoporyphyrin IX chelatase 98.33
PRK13531 498 regulatory ATPase RavA; Provisional 98.23
TIGR00764 608 lon_rel lon-related putative ATP-dependent proteas 98.2
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 97.96
CHL00181287 cbbX CbbX; Provisional 97.81
COG1239423 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis 97.27
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 97.2
COG0714329 MoxR-like ATPases [General function prediction onl 97.05
PRK13765 637 ATP-dependent protease Lon; Provisional 97.03
PF01078206 Mg_chelatase: Magnesium chelatase, subunit ChlI; I 96.63
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 96.44
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 96.39
COG1067 647 LonB Predicted ATP-dependent protease [Posttransla 95.94
COG0606490 Predicted ATPase with chaperone activity [Posttran 95.93
TIGR02902 531 spore_lonB ATP-dependent protease LonB. Members of 95.71
PRK10787 784 DNA-binding ATP-dependent protease La; Provisional 95.38
TIGR02329526 propionate_PrpR propionate catabolism operon regul 95.17
PRK15424538 propionate catabolism operon regulatory protein Pr 94.83
PRK11608326 pspF phage shock protein operon transcriptional ac 94.7
TIGR02974329 phageshock_pspF psp operon transcriptional activat 94.43
PF00158168 Sigma54_activat: Sigma-54 interaction domain; Inte 93.98
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 93.63
COG2204464 AtoC Response regulator containing CheY-like recei 93.46
TIGR01613304 primase_Cterm phage/plasmid primase, P4 family, C- 93.32
PF13654509 AAA_32: AAA domain; PDB: 3K1J_B. 93.15
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 93.12
PRK05022509 anaerobic nitric oxide reductase transcription reg 92.69
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 92.38
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 92.17
PRK11388638 DNA-binding transcriptional regulator DhaR; Provis 92.16
PRK10865857 protein disaggregation chaperone; Provisional 91.85
PRK10923469 glnG nitrogen regulation protein NR(I); Provisiona 91.62
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 91.54
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 91.25
TIGR02903 615 spore_lon_C ATP-dependent protease, Lon family. Me 90.99
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 90.39
TIGR01817534 nifA Nif-specific regulatory protein. This model r 90.36
PF07726131 AAA_3: ATPase family associated with various cellu 90.29
PRK10365441 transcriptional regulatory protein ZraR; Provision 88.86
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 88.41
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 88.05
PRK05201443 hslU ATP-dependent protease ATP-binding subunit Hs 87.85
TIGR01818463 ntrC nitrogen regulation protein NR(I). This model 87.55
PRK15429686 formate hydrogenlyase transcriptional activator Fh 87.55
PRK15115444 response regulator GlrR; Provisional 87.4
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 86.87
PTZ00361438 26 proteosome regulatory subunit 4-like protein; P 86.57
PRK08084235 DNA replication initiation factor; Provisional 85.93
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 85.84
TIGR02653 675 Lon_rel_chp conserved hypothetical protein. This m 85.74
PRK03992389 proteasome-activating nucleotidase; Provisional 85.71
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 85.47
PRK14709469 hypothetical protein; Provisional 85.21
TIGR00763 775 lon ATP-dependent protease La. This protein is ind 85.08
CHL00095821 clpC Clp protease ATP binding subunit 84.42
PRK13342 413 recombination factor protein RarA; Reviewed 82.36
TIGR00382413 clpX endopeptidase Clp ATP-binding regulatory subu 82.15
CHL00176 638 ftsH cell division protein; Validated 81.13
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 80.54
>KOG2545|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-79  Score=614.67  Aligned_cols=346  Identities=34%  Similarity=0.537  Sum_probs=305.5

Q ss_pred             CCCCCCCCccccee-----eecccCCCCEEEEEeEecCCccc-cccCCcccc-cccccccccccccccCCCChHHH-HHH
Q psy899           13 QPPCPNGYHTRLAQ-----WRHRVRYPVVSKFFGTWGSGCFQ-PCENNRVER-PVMELPLKVSSTVSLKDISSEEI-AST   84 (411)
Q Consensus        13 ~p~~~~g~~~~~i~-----~~~~~rpgd~v~~~G~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~is~~~~-~~i   84 (411)
                      -||+|+-.-++|++     +.-.+..+|.|+|+||+..++-- ..+..+-.. ..|+-+ +++...--.++.++-. .++
T Consensus       190 ePPlps~ds~aClVKvYe~~et~~qvnd~vdf~Gilsvdp~la~ld~ld~~~~ae~qa~-hvq~lqh~nPllp~ilr~el  268 (543)
T KOG2545|consen  190 EPPLPSNDSGACLVKVYEGMETKVQVNDAVDFIGILSVDPELASLDGLDCLHMAEFQAY-HVQALQHPNPLLPEILRKEL  268 (543)
T ss_pred             CCCCCCCCCCceEEEEecCcccceehhhhhhhheeeecChhhhcCCCcccccHHHHHHH-HHhccCCCCccchHHHHHHh
Confidence            36799999999976     55569999999999999866211 112111110 000000 1111111124555555 678


Q ss_pred             HHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeecc
Q psy899           85 RKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELN  164 (411)
Q Consensus        85 R~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt  164 (411)
                      |++|+.||+.+|+||.+|||||+|||+|.||+|+|+ .++|+|+|||+|  ||.+ +.|.++|+.+|+.|+|+++++|||
T Consensus       269 ~~~Llkylt~~Lg~d~iAAeyLllhLlStV~~R~d~-l~iGkftlNL~n--cpke-s~f~tqLy~iL~~Llpas~~~pmt  344 (543)
T KOG2545|consen  269 RPKLLKYLTKVLGNDNIAAEYLLLHLLSTVYHRTDG-LVIGKFTLNLTN--CPKE-SIFVTQLYSILRPLLPASVIQPMT  344 (543)
T ss_pred             hHHHHHHHHHhhcCchHHHHHHHHHHHHHhhccccc-eEeeeeEEeecC--CCch-hHHHHHHHHHHHHhchhhheeeee
Confidence            899999999999999999999999999999999999 999999999999  9998 599999999999999999999999


Q ss_pred             ccccccCCcceeecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHHHHHHHHHHcCccceeecCCccccccCC
Q psy899          165 VKSLNETTMIPRKDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNVKALSSVVNNQRMSYDFQFYDGTFPTDI  244 (411)
Q Consensus       165 ~~~LN~~~l~P~kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~~AL~~li~~Q~v~YdF~y~~ie~~~Dl  244 (411)
                      +++||++.|.|+|||++|+|.+|+||||+|||+|||||.|++|+||..||+|+++|+++|++|+|.|||+||+|++++|+
T Consensus       345 ie~lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv  424 (543)
T KOG2545|consen  345 IEELNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNV  424 (543)
T ss_pred             HHhhcccCccccccccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEeccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeEeecCCCCCCcceEEEecCCCCCchhHHHHHHHhhhcCChhhHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHHhh
Q psy899          245 PVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETFSAAHQYLKPELLNKIRTYISWIQNRGFDIPENLTEIVQKDFVEMRK  324 (411)
Q Consensus       245 ~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i~~~~~~~~~~~l~~lR~YLa~aR~~~~~i~ee~~~~IqddFV~~R~  324 (411)
                      +++|+|+|+||+|.|+.++++|+..+.          +++..|+.+++||.|++.+|+..++|++|++++||+|||+|||
T Consensus       425 ~vlIlSeGrsilPADl~i~lqp~~v~~----------le~~tps~l~q~rcyltt~r~l~~nIsee~t~~iq~dfV~mRq  494 (543)
T KOG2545|consen  425 RVLILSEGRSILPADLGIRLQPDSVDT----------LEFPTPSDLLQFRCYLTTMRNLRANISEEMTDYIQSDFVSMRQ  494 (543)
T ss_pred             eEEEeeCCcccCcccccccCCCCCCCc----------cccCChhHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887432          3456899999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHhhhccccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccc
Q psy899          325 ENKKTDANDLHTLIVLARLEHLRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKSRPR  391 (411)
Q Consensus       325 ~~~~it~~dLh~ll~LAR~~~~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~R~~  391 (411)
                      .++.++++|||.+|++||                  ++++|+|+++||+|+|+.|++||+.|+.|++
T Consensus       495 ~n~~snaddLs~lLv~sR------------------lls~S~G~ttlsre~wq~a~ele~lrr~rlq  543 (543)
T KOG2545|consen  495 YNKESNADDLSLLLVCSR------------------LLSKSFGRTTLSREDWQAARELENLRRVRLQ  543 (543)
T ss_pred             hCcccchhHHHHHHHHHH------------------HHHHhhccchhhHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999                  9999999999999999999999999999974

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0480|consensus Back     alignment and domain information
>KOG0482|consensus Back     alignment and domain information
>KOG0481|consensus Back     alignment and domain information
>PTZ00111 DNA replication licensing factor MCM4; Provisional Back     alignment and domain information
>KOG0478|consensus Back     alignment and domain information
>KOG0479|consensus Back     alignment and domain information
>smart00350 MCM minichromosome maintenance proteins Back     alignment and domain information
>KOG0477|consensus Back     alignment and domain information
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite Back     alignment and domain information
>PF13615 Racemase_4: Putative alanine racemase Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>TIGR00368 Mg chelatase-related protein Back     alignment and domain information
>PRK09862 putative ATP-dependent protease; Provisional Back     alignment and domain information
>CHL00081 chlI Mg-protoporyphyrin IX chelatase Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>TIGR00764 lon_rel lon-related putative ATP-dependent protease Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>PRK13765 ATP-dependent protease Lon; Provisional Back     alignment and domain information
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02902 spore_lonB ATP-dependent protease LonB Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR Back     alignment and domain information
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain Back     alignment and domain information
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model Back     alignment and domain information
>PRK10365 transcriptional regulatory protein ZraR; Provisional Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional Back     alignment and domain information
>TIGR01818 ntrC nitrogen regulation protein NR(I) Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>TIGR02653 Lon_rel_chp conserved hypothetical protein Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK14709 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 53/343 (15%), Positives = 96/343 (27%), Gaps = 101/343 (29%)

Query: 84  TRKDLKLLLTQLLMGDDVAADYLICY---------LLSRVYCRDEVGFALGKFSLNIFHR 134
           +R    L L Q L+    A   ++           +   V C         K    IF  
Sbjct: 132 SRLQPYLKLRQALLELRPA-KNVLIDGVLGSGKTWVALDV-CLSYK--VQCKMDFKIFWL 187

Query: 135 DLATSCSDYAQMLYDILKLLVCKSHYFELNVKSLNETTMIPRKDYNTNRLKSGLLQL-SS 193
           +L    S        +L++L    +  + N  S ++ +   +     + +++ L +L  S
Sbjct: 188 NLKNCNSPE-----TVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRLLKS 240

Query: 194 STY----LILDEIHLQPGQLN--NTGCLNVKAL-----SSVVNNQRMSYDFQFYDGTFPT 242
             Y    L+L  +       N  N  C   K L       V +         F      T
Sbjct: 241 KPYENCLLVLLNVQ-NAKAWNAFNLSC---KILLTTRFKQVTD---------FLSAATTT 287

Query: 243 DIPV------LSLSDTKSMLPSDCHIKLKPDPS--CS------SVIRETFS--AAH-QYL 285
            I +      L+  + KS+L      + +  P    +      S+I E+     A     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 286 KPELLNKIRTYIS-----------------------------------WIQNRGFDIPEN 310
           K    +K+ T I                                    W      D+   
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 311 LTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATH 353
           + ++ +   VE + +        ++    L     L    A H
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIY----LELKVKLENEYALH 446
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
3f8t_A506 Predicted ATPase involved in replication control, 100.0
3f9v_A595 Minichromosome maintenance protein MCM; replicativ 99.97
2r44_A331 Uncharacterized protein; putative ATPase, structur 98.63
1ltl_A279 DNA replication initiator (CDC21/CDC54); HET: DNA; 98.59
3nbx_X 500 ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu 98.57
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 98.55
2vl6_A268 SSO MCM N-TER, minichromosome maintenance protein 98.3
3k1j_A 604 LON protease, ATP-dependent protease LON; ATP-bind 98.17
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 97.27
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 97.05
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 96.63
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 96.31
3pxi_A758 Negative regulator of genetic competence CLPC/MEC; 96.07
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 95.51
1ojl_A304 Transcriptional regulatory protein ZRAR; response 94.98
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 94.83
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 94.75
3hws_A363 ATP-dependent CLP protease ATP-binding subunit CL; 94.52
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 94.15
1um8_A376 ATP-dependent CLP protease ATP-binding subunit CL; 93.98
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 93.89
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 93.76
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 92.99
3co5_A143 Putative two-component system transcriptional RES 92.72
3pvs_A 447 Replication-associated recombination protein A; ma 92.33
3bos_A242 Putative DNA replication factor; P-loop containing 91.93
1g41_A 444 Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep 91.55
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 91.25
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 90.63
3dzd_A368 Transcriptional regulator (NTRC family); sigma43 a 90.4
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 90.36
1qvr_A854 CLPB protein; coiled coil, AAA ATPase, chaperone; 89.88
1ny5_A387 Transcriptional regulator (NTRC family); AAA+ ATPa 88.57
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 87.7
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 86.38
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 85.94
2v1u_A387 Cell division control protein 6 homolog; DNA repli 85.91
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 84.31
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 84.29
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 83.86
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 83.29
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 83.18
3m6a_A 543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 82.25
2ce7_A 476 Cell division protein FTSH; metalloprotease; HET: 82.2
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 80.33
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Back     alignment and structure
Probab=100.00  E-value=5.3e-34  Score=295.78  Aligned_cols=316  Identities=13%  Similarity=0.098  Sum_probs=251.0

Q ss_pred             cCccceeecCCC-CCCCCccccee------eec------ccCCCCEEEEEeEecCCccccccCCcccccccccccccccc
Q psy899            4 DMSSLDVQKQPP-CPNGYHTRLAQ------WRH------RVRYPVVSKFFGTWGSGCFQPCENNRVERPVMELPLKVSST   70 (411)
Q Consensus         4 ~~~~~~~q~~p~-~~~g~~~~~i~------~~~------~~rpgd~v~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (411)
                      |-..|.|||.|+ +|+|..|++++      ++|      .++|||+|+|+||++..   ..++|.++.         .+.
T Consensus       115 d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~---~l~a~~i~~---------~~~  182 (506)
T 3f8t_A          115 DGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA---TLDALEVHK---------KDP  182 (506)
T ss_dssp             TTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT---EEEEEEEEE---------ECS
T ss_pred             ccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe---EEEEEEEEE---------cCc
Confidence            557889999997 99999999997      999      99999999999999755   345555441         233


Q ss_pred             cccCCCChHHHHH--------HHHHHHHHHHhhhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccch
Q psy899           71 VSLKDISSEEIAS--------TRKDLKLLLTQLLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSD  142 (411)
Q Consensus        71 ~~~~~is~~~~~~--------iR~~Li~~La~~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~  142 (411)
                      +....+|+++.+.        +++.|..+|++ ++|.+.++.+|+|.|++++..      .+|++|+.|.|  .||   .
T Consensus       183 ~~~~~~t~ed~~~i~~l~~~~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k------~rgdihVLL~G--~PG---t  250 (506)
T 3f8t_A          183 IPEVHPDPAELEEFRELADKDPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK------NSERLHVLLAG--YPV---V  250 (506)
T ss_dssp             SCCCCCCHHHHHHHHHHHHSCHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS------GGGCCCEEEES--CHH---H
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc------cCCceeEEEEC--CCC---h
Confidence            4556788877664        45689999999 999999999999999999644      68999999999  886   5


Q ss_pred             hHHHHHHHH-HHhccceEEeecccc---ccccCCcceeec-CCCCcccccceeeeCCcEEEEecCCCCCCccccccchHH
Q psy899          143 YAQMLYDIL-KLLVCKSHYFELNVK---SLNETTMIPRKD-YNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNV  217 (411)
Q Consensus       143 ~~s~L~~~l-~~L~Prs~yl~lt~~---~LN~~~l~P~kD-~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~  217 (411)
                       |++|.+++ ..++|+..|++....   +|+..    .++ .+ +.+++|.+.||+||++++||.       +++..+..
T Consensus       251 -KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s----~r~~tG-~~~~~G~l~LAdgGvl~lDEI-------n~~~~~~q  317 (506)
T 3f8t_A          251 -CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV----LKEDRG-WALRAGAAVLADGGILAVDHL-------EGAPEPHR  317 (506)
T ss_dssp             -HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE----EEESSS-EEEEECHHHHTTTSEEEEECC-------TTCCHHHH
T ss_pred             -HHHHHHHHHHHhCCCeEEecCCCCCccCceEE----EEcCCC-cccCCCeeEEcCCCeeehHhh-------hhCCHHHH
Confidence             99999999 999999999986543   34443    233 34 899999999999999999999       57888999


Q ss_pred             HHHHHHHHcCcccee-------e-------------cCCccccccCCCeeEeecCCCCCCcceEEEecCCCCCchhHHHH
Q psy899          218 KALSSVVNNQRMSYD-------F-------------QFYDGTFPTDIPVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRET  277 (411)
Q Consensus       218 ~AL~~li~~Q~v~Yd-------F-------------~y~~ie~~~Dl~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~  277 (411)
                      .+|+++|++|+|+..       |             ++.++ .++++|-.+|||      ||+.+.+.+.++.+...++ 
T Consensus       318 saLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~-~~~~Lp~alLDR------FDLi~i~~d~pd~e~d~e~-  389 (506)
T 3f8t_A          318 WALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPI-ARIDLDQDFLSH------FDLIAFLGVDPRPGEPEEQ-  389 (506)
T ss_dssp             HHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGG-GGCCSCHHHHTT------CSEEEETTC-----------
T ss_pred             HHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCc-cccCCChHHhhh------eeeEEEecCCCChhHhhcc-
Confidence            999999999987643       1             11123 456788888888      9999999988865432111 


Q ss_pred             HHHhhhcCChhhHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHHhhc----------CCCCCHHHHHHHHHHHhhhc
Q psy899          278 FSAAHQYLKPELLNKIRTYISWIQ--NRGFDIPENLTEIVQKDFVEMRKE----------NKKTDANDLHTLIVLARLEH  345 (411)
Q Consensus       278 i~~~~~~~~~~~l~~lR~YLa~aR--~~~~~i~ee~~~~IqddFV~~R~~----------~~~it~~dLh~ll~LAR~~~  345 (411)
                         .   ......+.+|+|+++||  ...+.+++++.++|.+.|+++|+.          .-.+|++.+.+|+++|+   
T Consensus       390 ---~---~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~---  460 (506)
T 3f8t_A          390 ---D---TEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAK---  460 (506)
T ss_dssp             ----------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHH---
T ss_pred             ---c---CCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHH---
Confidence               1   01226789999999999  478999999999999999999973          12699999999999999   


Q ss_pred             cccCCcccchhhHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh
Q psy899          346 LRLRPATHYQVDLIRLMSLSHGHSELTEDMWKVALAMEKERKS  388 (411)
Q Consensus       346 ~~~~~~~~~~~~~~rLlalS~G~~~lt~e~W~~a~~LE~~R~~  388 (411)
                                     .+|...|++.++.|+-+.|..|=..=..
T Consensus       461 ---------------A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~  488 (506)
T 3f8t_A          461 ---------------AHARMRLSDDVEPEDVDIAAELVDWYLE  488 (506)
T ss_dssp             ---------------HHHHHTTCSEECHHHHHHHHHHHHHHHH
T ss_pred             ---------------HHHHHcCcCCCCHHHHHHHHHHHHHHHH
Confidence                           9999999999999999999988654433
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Back     alignment and structure
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus} Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 99.28
d1ltla_239 DNA replication initiator (cdc21/cdc54) N-terminal 97.91
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 95.12
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 94.87
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 93.92
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 92.47
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 92.24
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 90.93
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 90.04
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 88.18
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.28  E-value=4.6e-11  Score=114.79  Aligned_cols=237  Identities=15%  Similarity=0.084  Sum_probs=159.2

Q ss_pred             hhcCcHHHHHHHHHHHhcceeeecCCceeeeceEEEEeecCCCCccchhHHHHHHHHHHhccceEEeecccccc------
Q psy899           95 LLMGDDVAADYLICYLLSRVYCRDEVGFALGKFSLNIFHRDLATSCSDYAQMLYDILKLLVCKSHYFELNVKSL------  168 (411)
Q Consensus        95 ~l~GD~laAEyLLL~L~S~V~~r~d~~~~lG~~sLnL~g~~~P~~~~~~~s~L~~~l~~L~Prs~yl~lt~~~L------  168 (411)
                      .+.|.+.++++|++.+++.      +   .|  |+.|.|  .||++   |+.|.+.+..++|....+..+.-+-      
T Consensus         8 ~I~Gq~~~kral~laa~~~------~---~h--~vLl~G--~pG~G---KT~lar~~~~iLp~~~~~~~~~~~~~~~~~~   71 (333)
T d1g8pa_           8 AIVGQEDMKLALLLTAVDP------G---IG--GVLVFG--DRGTG---KSTAVRALAALLPEIEAVEGCPVSSPNVEMI   71 (333)
T ss_dssp             GSCSCHHHHHHHHHHHHCG------G---GC--CEEEEC--CGGGC---TTHHHHHHHHHSCCEEEETTCTTCCSSGGGS
T ss_pred             hccCcHHHHHHHHHHHhcc------C---CC--eEEEEC--CCCcc---HHHHHHHHHHhCCCchhhccCccccCccccc
Confidence            4678999999999988743      1   11  789999  99999   9999999999999876653211000      


Q ss_pred             ---ccC-C------ccee---------------------ecCCCCcccccceeeeCCcEEEEecCCCCCCccccccchHH
Q psy899          169 ---NET-T------MIPR---------------------KDYNTNRLKSGLLQLSSSTYLILDEIHLQPGQLNNTGCLNV  217 (411)
Q Consensus       169 ---N~~-~------l~P~---------------------kD~~~~~L~aG~LQLa~gT~lvIDEt~L~eG~L~~~Gv~N~  217 (411)
                         ... .      ..|.                     ...+.+..++|.+-+|+||++++||.       ++...+-.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi-------~~~~~~~~  144 (333)
T d1g8pa_          72 PDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDEC-------NLLEDHIV  144 (333)
T ss_dssp             CTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTG-------GGSCHHHH
T ss_pred             cchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccH-------HHHHHHHH
Confidence               000 0      0000                     01135678899999999999999999       46777899


Q ss_pred             HHHHHHHHcCccceeecCCccccccCC-------------CeeEeecCCCCCCcceEEEecCCCCCchhHHHHH-HHhhh
Q psy899          218 KALSSVVNNQRMSYDFQFYDGTFPTDI-------------PVLSLSDTKSMLPSDCHIKLKPDPSCSSVIRETF-SAAHQ  283 (411)
Q Consensus       218 ~AL~~li~~Q~v~YdF~y~~ie~~~Dl-------------~vliLS~gKS~lp~Dl~vpl~~~~~~~~~~~e~i-~~~~~  283 (411)
                      ++|.++|+++++...=..+++.+|++.             +..++++      ||+.|.+....+......... ...+.
T Consensus       145 ~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDR------f~~~i~v~~~~~~~~~~~~~~~~~~~~  218 (333)
T d1g8pa_         145 DLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDR------FGLSVEVLSPRDVETRVEVIRRRDTYD  218 (333)
T ss_dssp             HHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTT------CSEEEECCCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhh------hcceeeccCcchhhHHHHHHHhhhhcc
Confidence            999999999999864222344444443             3444444      899988865443222111110 00000


Q ss_pred             cCCh--------hhHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhhhccccCCccc
Q psy899          284 YLKP--------ELLNKIRTYISWIQ--NRGFDIPENLTEIVQKDFVEMRKENKKTDANDLHTLIVLARLEHLRLRPATH  353 (411)
Q Consensus       284 ~~~~--------~~l~~lR~YLa~aR--~~~~~i~ee~~~~IqddFV~~R~~~~~it~~dLh~ll~LAR~~~~~~~~~~~  353 (411)
                       ..+        ..-..++..+..++  ...+.+++++...+.+.+++.+.    .+.+..++++++||           
T Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~----~S~R~~~~llrvAr-----------  282 (333)
T d1g8pa_         219 -ADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS----DGLRGELTLLRSAR-----------  282 (333)
T ss_dssp             -HCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS----CSHHHHHHHHHHHH-----------
T ss_pred             -cChHHHHHHHHHHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHHHcCC----CChHHHHHHHHHHH-----------
Confidence             011        01122333443333  35678899999999888887654    47899999999999           


Q ss_pred             chhhHHHHHHhhcCCCCCCHHHHHHHHHHH
Q psy899          354 YQVDLIRLMSLSHGHSELTEDMWKVALAME  383 (411)
Q Consensus       354 ~~~~~~rLlalS~G~~~lt~e~W~~a~~LE  383 (411)
                             .+|...|++.++.++-+.|..|=
T Consensus       283 -------tiA~L~gr~~V~~~di~~a~~lv  305 (333)
T d1g8pa_         283 -------ALAALEGATAVGRDHLKRVATMA  305 (333)
T ss_dssp             -------HHHHHTTCSBCCHHHHHHHHHHH
T ss_pred             -------HHHHHcCCCCCCHHHHHHHHHHH
Confidence                   89999999999999999877653
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure